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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02936-1
Contig ID Contig-U02936-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U02936-1 (Contig-U02936-1Q) /CSM_Contig/Contig-U02936-1Q.Seq.d
ATTATTTTATATATATAAACACATATATAAATAATATGGGTAAGCGTAAA
TCAAGTAAGCCACCCCCAAAAAAGGTAGTTCAAAAACTCCCAAAGCATTT
TGATTGCTTATTTTGTGACCATTCTCAGTCTGTAGATTGTATATTAGATA
GAGAACTTGGTAAAGGAGTTGCCAAGTGCAGAGTTTGTAATGCCTCATAT
GAAACACCAATTCATGAGTTATCAGATGCCATAGACGTTTATAGTGATTG
GATTGATGCTTGTGAATCAATTAGATAATTTCAATACAATTTGATGATAT
CACCTAACTTTAACATTACAAAAATAAAAATAAAAAATAAAAAAAAAAAA
AACCTATTTGTACATAAATAAAAA
Gap no gap
Contig length 374
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 5385323
End point 5384949
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U02936
List of clone(s) 

est1=SSH632E,0,375
est2=AFK752F,1,375
est3=AFK752Z,1,358
Translated Amino Acid sequence 
YFIYINTYINNMGKRKSSKPPPKKVVQKLPKHFDCLFCDHSQSVDCILDRELGKGVAKCR
VCNASYETPIHELSDAIDVYSDWIDACESIR*fqynlmispnfnitkikiknkkkknlfv
hk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
iilyi*thi*iiwvsvnqvshpqkr*fknsqsiliayfvtilsl*ivy*ienlvkelpsa
efvmphmkhqfmsyqmp*tfiviglmlvnqldnfnti**yhltltlqk*k*kikkkktyl
yink


Frame B:
lfyiykhiyk*yg*a*ik*atpkkgssktpkaf*llil*pfsvcrlyir*rtw*rscqvq
sl*cli*ntns*virchrrl**ld*cl*in*iisiqfddit*l*hyknknkk*kkkkpic
t*ik


Frame C:
YFIYINTYINNMGKRKSSKPPPKKVVQKLPKHFDCLFCDHSQSVDCILDRELGKGVAKCR
VCNASYETPIHELSDAIDVYSDWIDACESIR*fqynlmispnfnitkikiknkkkknlfv
hk*k
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02936-1 (Contig-U02936-1Q)
/CSM_Contig/Contig-U02936-1Q.Seq.d
         (374 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02936-1 (Contig-U02936-1Q) /CSM_Contig/Conti...   559  e-160
Contig-U04418-1 (Contig-U04418-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U12182-1 (Contig-U12182-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U10715-1 (Contig-U10715-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U03801-1 (Contig-U03801-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U14249-1 (Contig-U14249-1Q) /CSM_Contig/Conti...    30  1.6
Contig-U13981-1 (Contig-U13981-1Q) /CSM_Contig/Conti...    30  1.6
Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Conti...    30  1.6
Contig-U12449-1 (Contig-U12449-1Q) /CSM_Contig/Conti...    30  1.6
Contig-U12139-1 (Contig-U12139-1Q) /CSM_Contig/Conti...    30  1.6

>Contig-U02936-1 (Contig-U02936-1Q) /CSM_Contig/Contig-U02936-1Q.Seq.d
          Length = 374

 Score =  559 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 38  gggtaagcgtaaatcaagtaagccacccccaaaaaaggtagttcaaaaactcccaaagca 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38  gggtaagcgtaaatcaagtaagccacccccaaaaaaggtagttcaaaaactcccaaagca 97

                                                                       
Query: 98  ttttgattgcttattttgtgaccattctcagtctgtagattgtatattagatagagaact 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ttttgattgcttattttgtgaccattctcagtctgtagattgtatattagatagagaact 157

                                                                       
Query: 158 tggtaaaggagttgccaagtgcagagtttgtaatgcctcatatgaaacaccaattcatga 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tggtaaaggagttgccaagtgcagagtttgtaatgcctcatatgaaacaccaattcatga 217

                                                                       
Query: 218 gttatcagatgccatagacgtttatagtgattggattgatgcttgtgaatcaattagata 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gttatcagatgccatagacgtttatagtgattggattgatgcttgtgaatcaattagata 277

                                                     
Query: 278 atttcaatacaatttgatgatatcacctaactttaacattac 319
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atttcaatacaatttgatgatatcacctaactttaacattac 319


 Score = 44.1 bits (22), Expect = 1e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 353 cctatttgtacataaataaaaa 374
           ||||||||||||||||||||||
Sbjct: 353 cctatttgtacataaataaaaa 374


>Contig-U04418-1 (Contig-U04418-1Q) /CSM_Contig/Contig-U04418-1Q.Seq.d
          Length = 1187

 Score = 34.2 bits (17), Expect = 0.10
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 286 acaatttgatgatatca 302
           |||||||||||||||||
Sbjct: 592 acaatttgatgatatca 608


>Contig-U12182-1 (Contig-U12182-1Q) /CSM_Contig/Contig-U12182-1Q.Seq.d
          Length = 1091

 Score = 32.2 bits (16), Expect = 0.40
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 357 tttgtacataaataaa 372
           ||||||||||||||||
Sbjct: 106 tttgtacataaataaa 121


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3411
Number of Sequences: 6905
Number of extensions: 3411
Number of successful extensions: 215
Number of sequences better than 10.0: 61
length of query: 374
length of database: 5,674,871
effective HSP length: 16
effective length of query: 358
effective length of database: 5,564,391
effective search space: 1992051978
effective search space used: 1992051978
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.24
Homology vs DNA 
Query= Contig-U02936-1 (Contig-U02936-1Q) /CSM_Contig/Contig-U02936-1Q.Seq.d
         (374 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038374) Dictyostelium discoideum slug cDNA, clone SSH632.      559   e-162  2
(BJ328008) Dictyostelium discoideum cDNA clone:dda22h13, 5' ...   559   e-155  1
(BJ343281) Dictyostelium discoideum cDNA clone:dda22h13, 3' ...   373   3e-99  1
(EZ017405) TSA: Acropora millepora SeqIndex238, mRNA sequence.     54   0.004  1
(AR545962) Sequence 1093 from patent US 6747137.                   52   0.015  1
(AM881629) Mytilus edulis EST, 5' end sequence, clone mytilu...    52   0.015  1
(AM878066) Mytilus edulis EST, 5' end sequence, clone mytilu...    52   0.015  1
(AV670623) Oryzias latipes cDNA clone:OLb25.06g, similar to ...    50   0.060  1
(DK086466) Oryzias latipes cDNA, clone: olea56o06, 3' end.         50   0.060  1
(DK064239) Oryzias latipes cDNA, clone: olea56o06, 5' end.         50   0.060  1
(DK040729) Oryzias latipes cDNA, clone: olbr53i06, 3' end.         50   0.060  1
(DK040652) Oryzias latipes cDNA, clone: olbr53e20, 3' end.         50   0.060  1
(DK038791) Oryzias latipes cDNA, clone: olbr47o16, 3' end.         50   0.060  1
(DK029892) Oryzias latipes cDNA, clone: olbr22d21, 3' end.         50   0.060  1
(DK028793) Oryzias latipes cDNA, clone: olbr19a14, 3' end.         50   0.060  1
(DK026368) Oryzias latipes cDNA, clone: olbr11p21, 3' end.         50   0.060  1
(DK023556) Oryzias latipes cDNA, clone: olbr3m11, 3' end.          50   0.060  1
(DK018267) Oryzias latipes cDNA, clone: olbr53i06, 5' end.         50   0.060  1
(DK018192) Oryzias latipes cDNA, clone: olbr53e20, 5' end.         50   0.060  1
(DK016310) Oryzias latipes cDNA, clone: olbr47o16, 5' end.         50   0.060  1
(DK007377) Oryzias latipes cDNA, clone: olbr22d21, 5' end.         50   0.060  1
(DK006271) Oryzias latipes cDNA, clone: olbr19a14, 5' end.         50   0.060  1
(BJ735364) Oryzias latipes cDNA clone:MF015DA029p18, 5' end.       50   0.060  1
(BJ502772) Oryzias latipes cDNA clone:MF01FSA001I05, 3' end ...    50   0.060  1
(BJ502484) Oryzias latipes cDNA clone:MF01FSA001I05, 5' end ...    50   0.060  1
(FK219823) XABT223367.b1 Gateway compatible cien cDNA librar...    50   0.060  1
(FK120698) XABT162252.g1 Gateway compatible cien cDNA librar...    50   0.060  1
(FK120697) XABT162252.b1 Gateway compatible cien cDNA librar...    50   0.060  1
(FF804890) XABT95962.fwd Gateway compatible cien cDNA librar...    50   0.060  1
(FF748480) XABT57879.fwd Gateway compatible cien cDNA librar...    50   0.060  1
(FF710192) XABT30532.fwd Gateway compatible cien cDNA librar...    50   0.060  1
(FF710191) XABT30532.rev Gateway compatible cien cDNA librar...    50   0.060  1
(FF703713) XABT111968.fwd Gateway compatible cien cDNA libra...    50   0.060  1
(ES573098) FPS0112.CR_N06 LSG10-01 Lymnaea stagnalis cDNA cl...    50   0.060  1
(ES571417) FPS0110.CR_E04 LSG10-01 Lymnaea stagnalis cDNA cl...    50   0.060  1
(EL534779) EST_omor_eva_13932 omoreva mixed_tissue Osmerus m...    48   0.24   1
(EL534778) EST_omor_eva_13931 omoreva mixed_tissue Osmerus m...    48   0.24   1
(EL526680) EST_omor_eva_5833 omoreva mixed_tissue Osmerus mo...    48   0.24   1
(EL526679) EST_omor_eva_5832 omoreva mixed_tissue Osmerus mo...    48   0.24   1
(EE259051) RFAB348TH Castor bean cDNA library from flowers,8...    48   0.24   1
(CA912998) PCSC09493 Scarlet Runner Bean Suspensor Region Tr...    48   0.24   1
(FC799242) CBGC2791.fwd CBGC Lottia gigantea 15h 18h embryos...    48   0.24   1
(FC789110) CBGC19505.fwd CBGC Lottia gigantea 15h 18h embryo...    48   0.24   1
(FC755421) CBBI8707.fwd CBBI Lottia gigantea 26h,37h,61h Lar...    48   0.24   1
(FC755420) CBBI8707.rev CBBI Lottia gigantea 26h,37h,61h Lar...    48   0.24   1
(FC740036) CBBI11591.fwd CBBI Lottia gigantea 26h,37h,61h La...    48   0.24   1
(FC740035) CBBI11591.rev CBBI Lottia gigantea 26h,37h,61h La...    48   0.24   1
(FC729701) CBBG5553.fwd CBBG Lottia gigantea 12,15,18h embry...    48   0.24   1
(FC729700) CBBG5553.rev CBBG Lottia gigantea 12,15,18h embry...    48   0.24   1
(FC708362) CAXY519.fwd CAXY Lottia gigantea from male gonad ...    48   0.24   1
(FC708361) CAXY519.rev CAXY Lottia gigantea from male gonad ...    48   0.24   1
(FC646808) CAXU8653.fwd CAXU Lottia gigantea from female gon...    48   0.24   1
(FC619066) CAXS9792.fwd CAXS Lottia gigantea from head, foot...    48   0.24   1
(FC617835) CAXS9075.fwd CAXS Lottia gigantea from head, foot...    48   0.24   1
(FC571950) CAWG682.fwd CAWG Lottia gigantea from mantle (L) ...    48   0.24   1
(FC571949) CAWG682.rev CAWG Lottia gigantea from mantle (L) ...    48   0.24   1
(CP000300) Methanococcoides burtonii DSM 6242, complete genome.    36   0.44   2
(DY448240) HSAA-aaa29h05.g1 UCI-11 Hydra vulgaris cDNA 5' si...    46   0.93   1
(DV119876) CV03024B1F03.f2 CV03-normalized library Euphorbia...    46   0.93   1
(DV114711) CV03009B1G08.f1 CV03-normalized library Euphorbia...    46   0.93   1
(DV113152) CV03005A2A02.f1 CV03-normalized library Euphorbia...    46   0.93   1
(DC036131) Xenopus laevis NBRP cDNA clone:xlk101j09ex, 5' end.     46   0.93   1
(CN772514) tad82f05.y1 Hydra EST Darmstadt I Hydra magnipapi...    46   0.93   1
(CN772263) tad82f05.x1 Hydra EST Darmstadt I Hydra magnipapi...    46   0.93   1
(CN634096) taf56c03.y1 Hydra EST Darmstadt I Hydra magnipapi...    46   0.93   1
(CN633823) taf56c03.x1 Hydra EST Darmstadt I Hydra magnipapi...    46   0.93   1
(CN555482) tae13c12.y1 Hydra EST Darmstadt I Hydra magnipapi...    46   0.93   1
(CN555154) tae13c12.x1 Hydra EST Darmstadt I Hydra magnipapi...    46   0.93   1
(CN553498) tae25d06.y1 Hydra EST Darmstadt I Hydra magnipapi...    46   0.93   1
(CN553171) tae25d06.x1 Hydra EST Darmstadt I Hydra magnipapi...    46   0.93   1
(CB271359) taa21h10.x2 Hydra EST -II Hydra magnipapillata cD...    46   0.93   1
(CB073912) taa21h10.y1 Hydra EST -II Hydra magnipapillata cD...    46   0.93   1
(BP700431) Xenopus laevis NBRP cDNA clone:XL408k21ex, 5' end.      46   0.93   1
(BP686654) Xenopus laevis NBRP cDNA clone:XL451n22ex, 5' end.      46   0.93   1
(BP514493) Hydra magnipapillata cDNA, clone:hydmg018bw_17.         46   0.93   1
(ES748990) BGBV-aad09g01.b1 Snail_EST_pSMART Biomphalaria gl...    46   0.93   1
(BX294152) Rhodopirellula baltica SH 1 complete genome; segm...    46   0.93   1
(BT049664) Salmo salar clone ssal-eve-576-311 Transcription ...    44   3.7    1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    44   3.7    1
(FJ422212) Physarum polycephalum ELF-1-like protein mRNA, co...    44   3.7    1
(EJ575692) 1092960103627 Global-Ocean-Sampling_GS-29-01-01-1...    44   3.7    1
(EJ384289) 1092963789778 Global-Ocean-Sampling_GS-28-01-01-1...    44   3.7    1
(EG886313) EST_ssal_evf_44582 ssalevf mixed_tissue Salmo sal...    44   3.7    1
(EG863411) EST_ssal_eve_56361 ssaleve thyroid Salmo salar cD...    44   3.7    1
(EG863410) EST_ssal_eve_56360 ssaleve thyroid Salmo salar cD...    44   3.7    1
(EG815762) EST_ssal_evd_35507 ssalevd thymus Salmo salar cDN...    44   3.7    1
(EG815761) EST_ssal_evd_35506 ssalevd thymus Salmo salar cDN...    44   3.7    1
(EG801726) EST_ssal_evd_58336 ssalevd thymus Salmo salar cDN...    44   3.7    1
(DN928094) 4153549 BARC_3GAL chicken mixed tissue Gallus gal...    44   3.7    1
(DK003814) Oryzias latipes cDNA, clone: olbr11p21, 5' end.         44   3.7    1
(CX357953) ssalrgb533155_rev_0 mixed_tissue Salmo salar cDNA...    44   3.7    1
(CX141345) 1280818 NCCCWA 03RT Oncorhynchus mykiss cDNA clon...    44   3.7    1
(CX141344) 1280817 NCCCWA 03RT Oncorhynchus mykiss cDNA clon...    44   3.7    1
(CB492721) omykrbna003070 Oncorhynchus mykiss Tzenaicut Lake...    44   3.7    1
(CB483928) ccluwtbl001019 Coregonus clupeaformis head Corego...    44   3.7    1
(CA374119) 648425 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ...    44   3.7    1
(CA059852) ssalrgb533155 mixed_tissue Salmo salar cDNA, mRNA...    44   3.7    1
(BX890152) AGENAE Rainbow trout multi-tissues-normalized + 2...    44   3.7    1
(GO140330) CAGA28896.fwd CAGA Alvinella pompejana Normalized...    44   3.7    1
(GO127320) CAGA22777.fwd CAGA Alvinella pompejana Normalized...    44   3.7    1
(GO112428) CAGA15448.fwd CAGA Alvinella pompejana Normalized...    44   3.7    1
(GE826193) EST_omyk_evn_814021 omykevn RBC Oncorhynchus myki...    44   3.7    1
(FF844362) EST_tthy_evl_886265 tthy_evl Thymallus thymallus ...    44   3.7    1
(FF844361) EST_tthy_evl_876665 tthy_evl Thymallus thymallus ...    44   3.7    1
(CP001139) Vibrio fischeri MJ11 chromosome I, complete seque...    44   3.7    1
(CP000020) Vibrio fischeri ES114 chromosome I, complete sequ...    44   3.7    1
(BX005011) Zebrafish DNA sequence from clone CH211-59F19 in ...    36   4.9    3
(CB932361) ri88g12.y1 Meloidogyne chitwoodi egg pAMP1 v1 Mel...    38   8.9    2
(CB829708) ri04b04.y1 Meloidogyne chitwoodi egg pAMP1 v1 Mel...    38   8.9    2
(DR554830) WS0324.B21_B08 WS-MC-N-A-20 Picea glauca cDNA clo...    32   9.3    2

>(AU038374) Dictyostelium discoideum slug cDNA, clone SSH632.
          Length = 376

 Score =  559 bits (282), Expect(2) = e-162
 Identities = 282/282 (100%)
 Strand = Plus / Plus


Query: 38  gggtaagcgtaaatcaagtaagccacccccaaaaaaggtagttcaaaaactcccaaagca 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39  gggtaagcgtaaatcaagtaagccacccccaaaaaaggtagttcaaaaactcccaaagca 98


Query: 98  ttttgattgcttattttgtgaccattctcagtctgtagattgtatattagatagagaact 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  ttttgattgcttattttgtgaccattctcagtctgtagattgtatattagatagagaact 158


Query: 158 tggtaaaggagttgccaagtgcagagtttgtaatgcctcatatgaaacaccaattcatga 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tggtaaaggagttgccaagtgcagagtttgtaatgcctcatatgaaacaccaattcatga 218


Query: 218 gttatcagatgccatagacgtttatagtgattggattgatgcttgtgaatcaattagata 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gttatcagatgccatagacgtttatagtgattggattgatgcttgtgaatcaattagata 278


Query: 278 atttcaatacaatttgatgatatcacctaactttaacattac 319
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atttcaatacaatttgatgatatcacctaactttaacattac 320

 Score = 44.1 bits (22), Expect(2) = e-162
 Identities = 22/22 (100%)
 Strand = Plus / Plus


Query: 353 cctatttgtacataaataaaaa 374
           ||||||||||||||||||||||
Sbjct: 354 cctatttgtacataaataaaaa 375

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 350,325,226
Number of extensions: 20957436
Number of successful extensions: 1436630
Number of sequences better than 10.0: 111
Length of query: 374
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 351
Effective length of database: 99,442,330,388
Effective search space: 34904257966188
Effective search space used: 34904257966188
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.21
Homology vs Protein 
Query= Contig-U02936-1 (Contig-U02936-1Q) /CSM_Contig/Contig-U02936-1Q.Seq.d
         (374 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ422212_1(FJ422212|pid:none) Physarum polycephalum ELF-1-like p...    85   9e-16
CR382137_823(CR382137|pid:none) Debaryomyces hansenii strain CBS...    79   6e-14
CP000500_487(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    78   1e-13
FM992695_522(FM992695|pid:none) Candida dubliniensis CD36 chromo...    75   5e-13
BT081518_1(BT081518|pid:none) Rana catesbeiana clone rcat-evr-52...    73   3e-12
AM920435_45(AM920435|pid:none) Penicillium chrysogenum Wisconsin...    73   3e-12
(P36053) RecName: Full=Transcription elongation factor 1;  &AY55...    73   4e-12
BT081619_1(BT081619|pid:none) Rana catesbeiana clone rcat-evr-52...    73   4e-12
BT081768_1(BT081768|pid:none) Rana catesbeiana clone rcat-evr-51...    73   4e-12
AM270393_37(AM270393|pid:none) Aspergillus niger contig An17c011...    72   5e-12
CU928179_667(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    72   6e-12
(Q8LEF3) RecName: Full=Transcription elongation factor 1 homolog...    72   8e-12
(A4IFR3) RecName: Full=Transcription elongation factor 1 homolog...    71   1e-11
AE016818_579(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    70   3e-11
BT070997_1(BT070997|pid:none) Picea sitchensis clone WS02764_C16...    70   3e-11
BT074632_1(BT074632|pid:none) Osmerus mordax clone omor-eva-507-...    69   4e-11
(Q9XVZ8) RecName: Full=Transcription elongation factor 1 homolog...    69   5e-11
BT046749_1(BT046749|pid:none) Salmo salar clone ssal-sjb-009-334...    69   5e-11
CP001574_317(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    69   5e-11
BT083270_1(BT083270|pid:none) Anoplopoma fimbria clone afim-evh-...    69   5e-11
(Q8LHP0) RecName: Full=Transcription elongation factor 1 homolog...    67   2e-10
BT069013_1(BT069013|pid:none) Zea mays full-length cDNA clone ZM...    67   2e-10
FN374724_2(FN374724|pid:none) Schistosoma mansoni genome sequenc...    67   3e-10
CR382126_938(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    66   3e-10
AY915281_1(AY915281|pid:none) Schistosoma japonicum SJCHGC04188 ...    66   3e-10
CP000581_234(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    65   6e-10
AK120292_1(AK120292|pid:none) Oryza sativa Japonica Group cDNA c...    64   1e-09
(Q8MQI6) RecName: Full=Transcription elongation factor 1 homolog...    63   4e-09
(Q9U501) RecName: Full=Transcription elongation factor 1 homolog...    62   5e-09
EU957291_1(EU957291|pid:none) Zea mays clone 1588024 transcripti...    62   8e-09
CU640366_546(CU640366|pid:none) Podospora anserina genomic DNA c...    60   3e-08
AM910989_118(AM910989|pid:none) Plasmodium knowlesi strain H chr...    56   4e-07
AB006698_8(AB006698|pid:none) Arabidopsis thaliana genomic DNA, ...    50   3e-05
CR940352_525(CR940352|pid:none) Theileria annulata strain Ankara...    46   5e-04
AK318999_1(AK318999|pid:none) Arabidopsis thaliana AT5G46030 mRN...    45   8e-04
EU973754_1(EU973754|pid:none) Zea mays clone 408801 unknown mRNA.      43   0.003
BT074518_1(BT074518|pid:none) Osmerus mordax clone omor-eva-504-...    40   0.025
EU952364_1(EU952364|pid:none) Zea mays clone 1278514 unknown mRNA.     37   0.28
AL929603_156(AL929603|pid:none) Trypanosoma brucei chromosome 1,...    35   0.81
CP000472_2597(CP000472|pid:none) Shewanella piezotolerans WP3, c...    34   1.4

>FJ422212_1(FJ422212|pid:none) Physarum polycephalum ELF-1-like
           protein mRNA, complete cds.
          Length = 100

 Score = 84.7 bits (208), Expect = 9e-16
 Identities = 36/56 (64%), Positives = 43/56 (76%)
 Frame = +3

Query: 99  FDCLFCDHSQSVDCILDRELGKGVAKCRVCNASYETPIHELSDAIDVYSDWIDACE 266
           FDC FCDH+ S  C L R+ G G  +C VCNA++ TPI+ LS+AIDVYSDWIDACE
Sbjct: 23  FDCPFCDHAGSCSCELKRDAGIGKIECNVCNATFSTPINNLSEAIDVYSDWIDACE 78

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 504,174,806
Number of extensions: 8778064
Number of successful extensions: 18256
Number of sequences better than 10.0: 40
Number of HSP's gapped: 18251
Number of HSP's successfully gapped: 40
Length of query: 124
Length of database: 1,051,180,864
Length adjustment: 90
Effective length of query: 34
Effective length of database: 759,890,554
Effective search space: 25836278836
Effective search space used: 25836278836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.84  gvh: 0.41  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  8.0 %: mitochondrial

>> prediction for Contig-U02936-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0