Contig-U15192-1
Contig ID Contig-U15192-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15192-1 (Contig-U15192-1Q) /CSM_Contig/Contig-U15192-1Q.Seq.d
AATTTTTATTCTTATTATAACTATTATATAATTTTTTTATTTTTTTTTTT
CATTCCAACTAAATTACTATTATCCTTTATAATAAATTTATATATATATA
TTAAAAATGGCCACAAAGAAGAAGGTTTTATTAAAAGTATGTTTATATAA
TAATTTTAATTTATTTCATTTTAATTAATAAAATAAAAAAAAAAAAAAAA
TAAATAAATAAATAAAATAAAAAAAAAAATAAAAAAAAATAAAAATTAAT
AACTAATAAAAAAAAAAAAAAAAACCAACTTTTTTAATTTACCTATCTAT
TCAAATAGGTTATCATTTTAGGTGATTCAGGTGTTGGTAAAACATCTCTC
ATGAATCAATATGTAAATAAAAAATTCAGCAATCAATACAAAGCAACCAT
TGGTGCTGATTTCTTAACAAAAGAATTAATGGTCGATGACAGAGTTGTCA
CCATGCAAATTTGGGATACAGCTGGTCAAGAACGTTTCCCAATCATTAGG
TGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTATTATGTTATGATGTCA
ATGTTGCCAAAACATTTGAAAATCTTGATTCATGGAGAGATGAATTTTTA
ATTCAAGCTGGTCCACGTGATCCAGATAATTTCCCATTCGTCGTTTTAGG
TAACAAAATCGATTTAGAGAATCAACGTGTTGTTTCACAAAAGAGAGCAG
CATCATGGTGTCAAAGCAAAGGTAACATTCCATACTTTGAAACTTCTGCC
AAAGAAGCCATCAATGTTGAACAAGCTTTCCAAACCATTGCTAGAAATGC
TATTAAATTAGAAGATGGTTTAGTTTTCCCAATTCCAACTAATATTCAAG
TCATTCCAGAACCACAACCAGCTAAATCAGGTTGTTGTTAAATTAATATT
TCATAAAAATAAATAATAATAATAAAAAAAAAAATAAAAAAAATAAAATA
ATTGTAATCAAAAGNCTTTTTAATAAATGAAA

Gap no gap
Contig length 982
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2622700
End point 2623681
Strand (PLUS/MINUS) PLUS
Number of clones 13
Number of EST 13
Link to clone list U15192
List of clone(s)

est1=SSF622E,1,504
est2=FC-BI01E,158,944
est3=SSC718F,173,894
est4=SSE736Z,262,944
est5=SSJ532Z,262,953
est6=SSG433Z,278,923
est7=SSK735Z,343,961
est8=SSE716Z,368,963
est9=SSB783Z,446,979
est10=SSB755Z,470,960
est11=SSE419Z,473,982
est12=SSE192Z,548,973
est13=VSE884Z,654,923
Translated Amino Acid sequence
nfysyynyyiiflffffiptklllsfiinlyiyiknghkeegfiksmfi**f*fisf*li
k*kkkknk*inkikkkikknkn**likkkkktnffnlpiysnrlsf*viqvlvkhls*in
m*iknsaintkqplvlis*qkn*WSMTELSPCKFGIQLVKNVSQSLGVAFYRGADCCVLC
YDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAASWCQSK
GNIPYFETSAKEAINVEQAFQTIARNAIKLEDGLVFPIPTNIQVIPEPQPAKSGCC*ini
s*k*iiiikkkikkik*l*skxfline


Translated Amino Acid sequence (All Frames)
Frame A:
nfysyynyyiiflffffiptklllsfiinlyiyiknghkeegfiksmfi**f*fisf*li
k*kkkknk*inkikkkikknkn**likkkkktnffnlpiysnrlsf*viqvlvkhls*in
m*iknsaintkqplvlis*qkn*WSMTELSPCKFGIQLVKNVSQSLGVAFYRGADCCVLC
YDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAASWCQSK
GNIPYFETSAKEAINVEQAFQTIARNAIKLEDGLVFPIPTNIQVIPEPQPAKSGCC*ini
s*k*iiiikkkikkik*l*skxfline


Frame B:
ifiliitii*ffyfffsfqlnyyypl**iyiyilkmatkkkvllkvclynnfnlfhfn**
nkkkkkink*ik*kkk*kkikinn**kkkkkptfliylsiqigyhfr*frcw*nishesi
ck*kiqqsiqsnhwc*flnkringr*qschhanlgyswsrtfpnh*vllsivvlivvyyv
mmsmlpkhlkilihgemnf*fklvhviqiishssf*vtksi*rinvlfhkreqhhgvkak
vtfhtlkllpkkpsmlnklskpllemlln*kmv*fsqfqlifksfqnhnqlnqvvvklif
hknk****kkk*kk*nncnqkxf**mk


Frame C:
flfll*llynffifffhsn*itiilynkfiyiy*kwpqrrrfy*kyvyiiiliyfilink
ikkkkk*ink*nkkknkkk*klitnkkkkknqlf*ftylfk*viilgdsgvgktslmnqy
vnkkfsnqykatigadfltkelmvddrvvtmqiwdtagqerfpiirccflswc*llciml
*cqccqni*ks*fmer*ifnsswst*sr*fpirrfr*qnrfrestccftkessimvskqr
*hsil*nfcqrshqc*tsfpnhc*kcy*irrwfsfpnsn*ysshsrttts*irllln*yf
ikinnnnkkknkknkiivikxlfnk*


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15192-1 (Contig-U15192-1Q)
/CSM_Contig/Contig-U15192-1Q.Seq.d
(982 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15192-1 (Contig-U15192-1Q) /CSM_Contig/Conti... 1287 0.0
Contig-U14168-1 (Contig-U14168-1Q) /CSM_Contig/Conti... 60 7e-09
Contig-U15727-1 (Contig-U15727-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U04737-1 (Contig-U04737-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U16339-1 (Contig-U16339-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U15666-1 (Contig-U15666-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U15615-1 (Contig-U15615-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U15276-1 (Contig-U15276-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U05260-1 (Contig-U05260-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U16487-1 (Contig-U16487-1Q) /CSM_Contig/Conti... 38 0.025

>Contig-U15192-1 (Contig-U15192-1Q) /CSM_Contig/Contig-U15192-1Q.Seq.d
Length = 982

Score = 1287 bits (649), Expect = 0.0
Identities = 649/649 (100%)
Strand = Plus / Plus


Query: 275 ccaacttttttaatttacctatctattcaaataggttatcattttaggtgattcaggtgt 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccaacttttttaatttacctatctattcaaataggttatcattttaggtgattcaggtgt 334


Query: 335 tggtaaaacatctctcatgaatcaatatgtaaataaaaaattcagcaatcaatacaaagc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tggtaaaacatctctcatgaatcaatatgtaaataaaaaattcagcaatcaatacaaagc 394


Query: 395 aaccattggtgctgatttcttaacaaaagaattaatggtcgatgacagagttgtcaccat 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaccattggtgctgatttcttaacaaaagaattaatggtcgatgacagagttgtcaccat 454


Query: 455 gcaaatttgggatacagctggtcaagaacgtttcccaatcattaggtgttgctttctatc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gcaaatttgggatacagctggtcaagaacgtttcccaatcattaggtgttgctttctatc 514


Query: 515 gtggtgctgattgttgtgtattatgttatgatgtcaatgttgccaaaacatttgaaaatc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtggtgctgattgttgtgtattatgttatgatgtcaatgttgccaaaacatttgaaaatc 574


Query: 575 ttgattcatggagagatgaatttttaattcaagctggtccacgtgatccagataatttcc 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttgattcatggagagatgaatttttaattcaagctggtccacgtgatccagataatttcc 634


Query: 635 cattcgtcgttttaggtaacaaaatcgatttagagaatcaacgtgttgtttcacaaaaga 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cattcgtcgttttaggtaacaaaatcgatttagagaatcaacgtgttgtttcacaaaaga 694


Query: 695 gagcagcatcatggtgtcaaagcaaaggtaacattccatactttgaaacttctgccaaag 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gagcagcatcatggtgtcaaagcaaaggtaacattccatactttgaaacttctgccaaag 754


Query: 755 aagccatcaatgttgaacaagctttccaaaccattgctagaaatgctattaaattagaag 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aagccatcaatgttgaacaagctttccaaaccattgctagaaatgctattaaattagaag 814


Query: 815 atggtttagttttcccaattccaactaatattcaagtcattccagaaccacaaccagcta 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 atggtttagttttcccaattccaactaatattcaagtcattccagaaccacaaccagcta 874


Query: 875 aatcaggttgttgttaaattaatatttcataaaaataaataataataat 923
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aatcaggttgttgttaaattaatatttcataaaaataaataataataat 923


Score = 155 bits (78), Expect = 2e-37
Identities = 78/78 (100%)
Strand = Plus / Plus


Query: 102 taaaaatggccacaaagaagaaggttttattaaaagtatgtttatataataattttaatt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 taaaaatggccacaaagaagaaggttttattaaaagtatgtttatataataattttaatt 161


Query: 162 tatttcattttaattaat 179
||||||||||||||||||
Sbjct: 162 tatttcattttaattaat 179


Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 51 cattccaactaaattactattatcctttataataaatt 88
||||||||||||||||||||||||||||||||||||||
Sbjct: 51 cattccaactaaattactattatcctttataataaatt 88


Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 949 taattgtaatcaaaagnctttttaataaatgaaa 982
||||||||||||||||||||||||||||||||||
Sbjct: 949 taattgtaatcaaaagnctttttaataaatgaaa 982


Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 1 aatttttattcttattataactattatataa 31
|||||||||||||||||||||||||||||||
Sbjct: 1 aatttttattcttattataactattatataa 31


>Contig-U14168-1 (Contig-U14168-1Q) /CSM_Contig/Contig-U14168-1Q.Seq.d
Length = 1181

Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus


Query: 457 aaatttgggatacagctggtcaagaacgtt 486
||||||||||||||||||||||||||||||
Sbjct: 398 aaatttgggatacagctggtcaagaacgtt 427


Score = 30.2 bits (15), Expect = 6.1
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 905 aaaaataaataataataat 923
|||||| ||||||||||||
Sbjct: 213 aaaaatgaataataataat 231


>Contig-U15727-1 (Contig-U15727-1Q) /CSM_Contig/Contig-U15727-1Q.Seq.d
Length = 2329

Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Plus


Query: 150 ataattttaatttatttcattttaattaa 178
||||||||||||||||| ||||| |||||
Sbjct: 369 ataattttaatttatttaatttttattaa 397


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,667
Number of Sequences: 8402
Number of extensions: 42667
Number of successful extensions: 5138
Number of sequences better than 10.0: 799
length of query: 982
length of database: 8,075,542
effective HSP length: 16
effective length of query: 966
effective length of database: 7,941,110
effective search space: 7671112260
effective search space used: 7671112260
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.15
Homology vs DNA
Query= Contig-U15192-1 (Contig-U15192-1Q) /CSM_Contig/Contig-U15192-1Q.Seq.d
(982 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C94282) Dictyostelium discoideum slug cDNA, clone SSK735. 793 0.0 2
(C94121) Dictyostelium discoideum slug cDNA, clone SSG433. 793 0.0 2
(C92391) Dictyostelium discoideum slug cDNA, clone SSE736. 793 0.0 2
(C91088) Dictyostelium discoideum slug cDNA, clone SSJ532. 793 0.0 2
(U02928) Dictyostelium discoideum Ax3 Rab7 mRNA, complete cds. 785 0.0 2
(AU284707) Dictyostelium discoideum gamete cDNA clone:FC-BI0... 779 0.0 2
(C92379) Dictyostelium discoideum slug cDNA, clone SSE716. 484 0.0 3
(AU037886) Dictyostelium discoideum slug cDNA, clone SSE419. 819 0.0 2
(AU037333) Dictyostelium discoideum slug cDNA, clone SSB783. 745 0.0 2
(AU037313) Dictyostelium discoideum slug cDNA, clone SSB755. 720 0.0 3
(AU037704) Dictyostelium discoideum slug cDNA, clone SSE192. 640 e-179 1
(AU263456) Dictyostelium discoideum vegetative cDNA clone:VS... 466 e-127 1
(C92886) Dictyostelium discoideum slug cDNA, clone SSF622. 365 2e-96 1
(AU071905) Dictyostelium discoideum slug cDNA, clone SSC718. 206 3e-79 4
(FE250201) CAPH2714.rev CAPH Naegleria gruberi amoeba stage ... 105 5e-66 4
(FE252171) CAPH3870.rev CAPH Naegleria gruberi amoeba stage ... 105 5e-66 4
(FE250202) CAPH2714.fwd CAPH Naegleria gruberi amoeba stage ... 105 5e-66 4
(FE252172) CAPH3870.fwd CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(FE256241) CAPH601.fwd CAPH Naegleria gruberi amoeba stage N... 105 6e-66 4
(FE256240) CAPH601.rev CAPH Naegleria gruberi amoeba stage N... 105 6e-66 4
(FE248121) CAPH1498.fwd CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(FE254955) CAPH5325.rev CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(FE248120) CAPH1498.rev CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(FE249470) CAPH2299.fwd CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(FE249544) CAPH2341.fwd CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(FE249543) CAPH2341.rev CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(FE254956) CAPH5325.fwd CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(FE254104) CAPH4884.rev CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(FE254105) CAPH4884.fwd CAPH Naegleria gruberi amoeba stage ... 105 6e-66 4
(DY891375) CeleSEQ10043 Cunninghamella elegans pBluescript (... 137 1e-61 4
(DY889397) CeleSEQ10925 Cunninghamella elegans pBluescript (... 137 1e-61 4
(DY886697) CeleSEQ2450 Cunninghamella elegans pBluescript (E... 137 1e-61 4
(FE251201) CAPH3312.fwd CAPH Naegleria gruberi amoeba stage ... 105 4e-61 4
(BW642460) Dugesia ryukyuensis mRNA, clone: Dr_sW_024_G03, 5... 129 1e-58 3
(BW641018) Dugesia ryukyuensis mRNA, clone: Dr_sW_020_A02, 5... 129 7e-54 3
(BW641340) Dugesia ryukyuensis mRNA, clone: Dr_sW_021_A02, 5... 129 7e-54 3
(BP187927) Dugesia japonica cDNA, clone: 03538_HH, expressed... 123 6e-51 3
(BE580376) kq40f10.y1 TBN95TM-SSR Strongyloides stercoralis ... 88 4e-48 4
(BG227078) kp96f12.y1 TBN95TM-SSR Strongyloides stercoralis ... 88 4e-48 4
(BF015083) kq64a11.y1 TBN95TM-SSR Strongyloides stercoralis ... 88 4e-48 4
(FE249469) CAPH2299.rev CAPH Naegleria gruberi amoeba stage ... 90 4e-46 3
(BE029307) kp30e06.y1 TBN95TM-SSFH Strongyloides stercoralis... 76 1e-44 4
(EA366631) Sequence 1482 from patent US 7309815. 88 1e-41 4
(DB751053) Apis mellifera head cDNA, RIKEN full-length enric... 109 1e-41 3
(DB731862) Apis mellifera head cDNA, RIKEN full-length enric... 109 1e-41 3
(DB734417) Apis mellifera head cDNA, RIKEN full-length enric... 109 1e-41 3
(DB734346) Apis mellifera head cDNA, RIKEN full-length enric... 109 1e-41 3
(DB742707) Apis mellifera head cDNA, RIKEN full-length enric... 109 1e-41 3
(EV522253) JB2_31_B08 Castor seed endosperm Ricinus communis... 82 1e-40 5
(DB748921) Apis mellifera head cDNA, RIKEN full-length enric... 70 2e-39 4
(EV521933) JB2_9_H01 Castor seed endosperm Ricinus communis ... 82 2e-39 5
(EC854011) HDE00004019 Hyperamoeba dachnaya Non-normalized (... 100 4e-37 5
(FG079911) UI-FF-IH0-aat-g-17-0-UI.r1 Ceratitis capitata adu... 101 1e-36 4
(FG081562) UI-FF-IH0-aax-m-21-0-UI.r1 Ceratitis capitata adu... 101 1e-36 4
(FG085788) CMRC-FF-IH0-acb-b-19-0-CMRC.r1 Ceratitis capitata... 101 1e-36 4
(FG086730) CMRC-FF-IH0-ace-p-02-0-CMRC.r1 Ceratitis capitata... 101 2e-36 4
(DV140415) CV03125B1A07.f1 CV03-normalized library Euphorbia... 86 2e-36 5
(DV122532) CV03033X1C02.f1 CV03-normalized library Euphorbia... 86 2e-36 5
(GE635526) LINN_XX_114_J02_LINN114.CR_J02 R. communis develo... 68 4e-36 5
(DW012365) w16l2_M13F Myzus persicae, tobacco lineage, whole... 82 2e-35 3
(FG070643) UI-FF-IF0-aag-j-17-0-UI.r1 Ceratitis capitata emb... 109 8e-35 4
(FG071915) UI-FF-IF0-aaj-i-22-0-UI.r1 Ceratitis capitata emb... 109 8e-35 4
(BY894161) Cryptomeria japonica cDNA clone: CMFL045_J07, 5'e... 111 1e-34 4
(BY892253) Cryptomeria japonica cDNA clone: CMFL040_F23, 5'e... 111 1e-34 4
(FG086251) CMRC-FF-IH0-acd-g-07-0-CMRC.r1 Ceratitis capitata... 109 2e-34 3
(FG087043) CMRC-FF-IH0-acf-h-02-0-CMRC.r1 Ceratitis capitata... 109 2e-34 3
(FC572919) CAXP10169.fwd CAXP Lottia gigantea from head, foo... 121 3e-34 3
(FC748540) CBBI3982.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 121 3e-34 3
(FC685134) CAXX18056.fwd CAXX Lottia gigantea from male gona... 121 3e-34 3
(DV145230) CV03138B2B07.f1 CV03-normalized library Euphorbia... 86 3e-34 5
(FC684866) CAXX17901.fwd CAXX Lottia gigantea from male gona... 121 3e-34 3
(FC771581) CBBN6535.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv... 121 4e-34 3
(FC697074) CAXX5896.fwd CAXX Lottia gigantea from male gonad... 121 4e-34 3
(CK810521) Rasgsc5321 Salivary Gland 4th instar 3rd period (... 70 1e-33 4
(FD657701) MF1_171_E11.b1_F001 Limnanthes alba EST Library M... 84 9e-33 4
(FF425016) G142P60029RB2.T0 Acorn worm juvenile pCMVSport6 l... 137 1e-32 2
(FF479004) G613P6207RD12.T0 Acorn worm blastula/gastrula pCM... 137 1e-32 2
(FF463403) G50P6206RE9.T0 Acorn worm gastrula/neurula pCMVSp... 137 1e-32 2
(FF424820) G142P60025RH8.T0 Acorn worm juvenile pCMVSport6 l... 137 1e-32 2
(FF431237) G142P60130RC1.T0 Acorn worm juvenile pCMVSport6 l... 137 1e-32 2
(FF456795) G50P6018FE3.T0 Acorn worm gastrula/neurula pCMVSp... 137 1e-32 2
(FF429617) G142P60108RE6.T0 Acorn worm juvenile pCMVSport6 l... 137 1e-32 2
(FF426413) G142P60055RC4.T0 Acorn worm juvenile pCMVSport6 l... 137 1e-32 2
(FF469494) G613P6035RD12.T0 Acorn worm blastula/gastrula pCM... 137 1e-32 2
(FF674494) G826P55RD12.T0 Acorn worm normalized juvenile pEx... 137 1e-32 2
(FF607654) G825P5135RC8.T0 Acorn worm normalized gastrula pE... 137 1e-32 2
(FF659759) G826P5294RH7.T0 Acorn worm normalized juvenile pE... 137 1e-32 2
(FF603285) G825P5108RC3.T0 Acorn worm normalized gastrula pE... 137 1e-32 2
(FF522764) G710P5266RA6.T0 Acorn worm normalized juvenile pE... 137 1e-32 2
(FF507893) G709P521RA7.T0 Acorn worm normalized neurula pExp... 137 1e-32 2
(CK810124) Rasgsc4485 Salivary Gland 4th instar 3rd period (... 70 2e-32 4
(BY895243) Cryptomeria japonica cDNA clone: CMFL048_J20, 5'e... 103 2e-32 4
(FC575457) CAXP1173.fwd CAXP Lottia gigantea from head, foot... 121 2e-32 3
(FG644235) TT-19_I11 K326 late senescent leaf library Nicoti... 101 2e-32 3
(FC641558) CAXU5468.fwd CAXU Lottia gigantea from female gon... 121 2e-32 3
(EB426261) KF8C.105K02F.051215T7 KF8 Nicotiana tabacum cDNA ... 101 2e-32 3
(EB451481) KT7C.110L01F.051221T7 KT7 Nicotiana tabacum cDNA ... 101 3e-32 3
(EB428189) KF8B.200H19F.060120T7 KF8 Nicotiana tabacum cDNA ... 101 3e-32 3
(FG148413) AGN_RPC002xm14f1.ab1 AGN_RPC Nicotiana tabacum cD... 101 3e-32 3
(EB450254) KT7C.106D07F.051219T7 KT7 Nicotiana tabacum cDNA ... 101 3e-32 3

>(C94282) Dictyostelium discoideum slug cDNA, clone SSK735.
Length = 618

Score = 793 bits (400), Expect(2) = 0.0
Identities = 400/400 (100%)
Strand = Plus / Plus


Query: 489 ccaatcattaggtgttgctttctatcgtggtgctgattgttgtgtattatgttatgatgt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ccaatcattaggtgttgctttctatcgtggtgctgattgttgtgtattatgttatgatgt 205


Query: 549 caatgttgccaaaacatttgaaaatcttgattcatggagagatgaatttttaattcaagc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 caatgttgccaaaacatttgaaaatcttgattcatggagagatgaatttttaattcaagc 265


Query: 609 tggtccacgtgatccagataatttcccattcgtcgttttaggtaacaaaatcgatttaga 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tggtccacgtgatccagataatttcccattcgtcgttttaggtaacaaaatcgatttaga 325


Query: 669 gaatcaacgtgttgtttcacaaaagagagcagcatcatggtgtcaaagcaaaggtaacat 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaatcaacgtgttgtttcacaaaagagagcagcatcatggtgtcaaagcaaaggtaacat 385


Query: 729 tccatactttgaaacttctgccaaagaagccatcaatgttgaacaagctttccaaaccat 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tccatactttgaaacttctgccaaagaagccatcaatgttgaacaagctttccaaaccat 445


Query: 789 tgctagaaatgctattaaattagaagatggtttagttttcccaattccaactaatattca 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgctagaaatgctattaaattagaagatggtttagttttcccaattccaactaatattca 505


Query: 849 agtcattccagaaccacaaccagctaaatcaggttgttgt 888
||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtcattccagaaccacaaccagctaaatcaggttgttgt 545

Score = 291 bits (147), Expect(2) = 0.0
Identities = 147/147 (100%)
Strand = Plus / Plus


Query: 343 catctctcatgaatcaatatgtaaataaaaaattcagcaatcaatacaaagcaaccattg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catctctcatgaatcaatatgtaaataaaaaattcagcaatcaatacaaagcaaccattg 60


Query: 403 gtgctgatttcttaacaaaagaattaatggtcgatgacagagttgtcaccatgcaaattt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgctgatttcttaacaaaagaattaatggtcgatgacagagttgtcaccatgcaaattt 120


Query: 463 gggatacagctggtcaagaacgtttcc 489
|||||||||||||||||||||||||||
Sbjct: 121 gggatacagctggtcaagaacgtttcc 147

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 950,235,171
Number of extensions: 58175004
Number of successful extensions: 4391662
Number of sequences better than 10.0: 10904
Length of query: 982
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 958
Effective length of database: 100,704,341,533
Effective search space: 96474759188614
Effective search space used: 96474759188614
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.15
Homology vs Protein
Query= Contig-U15192-1 (Contig-U15192-1Q) /CSM_Contig/Contig-U15192-1Q.Seq.d
(982 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BT045800_1(BT045800|pid:none) Salmo salar clone ssal-rgf-531-287... 186 3e-75
BC054602_1(BC054602|pid:none) Danio rerio RAB7, member RAS oncog... 184 6e-75
(Q3T0F5) RecName: Full=Ras-related protein Rab-7a; &BC102415_1(... 184 8e-75
EU596593_1(EU596593|pid:none) Ovis aries RAS oncogene family-lik... 183 1e-74
BT083027_1(BT083027|pid:none) Anoplopoma fimbria clone afim-evh-... 182 2e-74
BT044746_1(BT044746|pid:none) Salmo salar clone ssal-rgf-502-190... 182 3e-74
AY321151_1(AY321151|pid:none) Aiptasia pulchella Rab7 mRNA, comp... 181 6e-74
(Q5R9Y4) RecName: Full=Ras-related protein Rab-7a; &CR859246_1(... 180 1e-73
U44104_1(U44104|pid:none) Homo sapiens small GTP binding protein... 180 1e-73
BC077884_1(BC077884|pid:none) Xenopus laevis RAB7, member RAS on... 181 2e-73
S62733(S62733) small GTP-binding protein Rab7 - mouse &X89650_1... 179 3e-73
BC072717_1(BC072717|pid:none) Danio rerio zgc:91909, mRNA (cDNA ... 180 4e-73
AF050175_1(AF050175|pid:none) Homo sapiens Rab7 (Rab7) gene, com... 180 7e-73
AE017351_60(AE017351|pid:none) Cryptococcus neoformans var. neof... 182 7e-73
AY365246_1(AY365246|pid:none) Cucumis sativus putative GTP-bindi... 185 2e-72
AM457818_2(AM457818|pid:none) Vitis vinifera contig VV78X000502.... 184 3e-72
AY725788_1(AY725788|pid:none) Oncometopia nigricans putative Rab... 175 3e-72
GN106075_1(GN106075|pid:none) Sequence 10856 from Patent WO20090... 183 5e-72
DQ231062_1(DQ231062|pid:none) Penaeus monodon WSSV receptor Rab7... 176 8e-72
BT051223_1(BT051223|pid:none) Medicago truncatula clone MTYF1_F2... 184 1e-71
(Q9C2L8) RecName: Full=Probable Ras-related protein Rab7; &AL51... 182 2e-71
BT070588_1(BT070588|pid:none) Picea sitchensis clone WS02738_C05... 181 2e-71
DQ222491_1(DQ222491|pid:none) Solanum tuberosum clone 099C08 unk... 181 3e-71
AB379643_1(AB379643|pid:none) Marsupenaeus japonicus Rab7 mRNA f... 176 3e-71
(O97572) RecName: Full=Ras-related protein Rab-7a; &AF050174_1(... 171 6e-71
AY226827_1(AY226827|pid:none) Oryza sativa (indica cultivar-grou... 181 6e-71
DQ443175_1(DQ443175|pid:none) Bombyx mori Rab7 mRNA, complete cds. 173 8e-71
GN105947_1(GN105947|pid:none) Sequence 10728 from Patent WO20090... 179 8e-71
(Q40787) RecName: Full=Ras-related protein Rab7; &U40219_1(U402... 179 1e-70
EF082681_1(EF082681|pid:none) Picea sitchensis clone WS0289_K18 ... 174 1e-70
(Q9XER8) RecName: Full=Ras-related protein Rab7; &AF116243_1(AF... 178 1e-70
CU640366_355(CU640366|pid:none) Podospora anserina genomic DNA c... 179 1e-70
AC130603_11(AC130603|pid:none) Oryza sativa (japonica cultivar-g... 178 1e-70
GN105949_1(GN105949|pid:none) Sequence 10730 from Patent WO20090... 178 2e-70
Z73942_1(Z73942|pid:none) L.japonicus mRNA for small GTP-binding... 179 2e-70
DQ902339_1(DQ902339|pid:none) Capsicum annuum small GTPase Rab2 ... 180 3e-70
GN106007_1(GN106007|pid:none) Sequence 10788 from Patent WO20090... 177 3e-70
BT055410_1(BT055410|pid:none) Zea mays full-length cDNA clone ZM... 177 4e-70
AM485913_5(AM485913|pid:none) Vitis vinifera contig VV78X238946.... 177 5e-70
T26119(T26119) hypothetical protein W03C9.3 - Caenorhabditis ele... 177 5e-70
AY829438_1(AY829438|pid:none) Pennisetum glaucum Rab7 mRNA, comp... 173 5e-70
BT063966_1(BT063966|pid:none) Zea mays full-length cDNA clone ZM... 176 7e-70
GN106015_1(GN106015|pid:none) Sequence 10796 from Patent WO20090... 176 9e-70
(O24461) RecName: Full=Ras-related protein Rab7; &U82219_1(U822... 176 1e-69
Z73943_1(Z73943|pid:none) L.japonicus mRNA for small GTP-binding... 176 2e-69
AY849659_1(AY849659|pid:none) Magnaporthe grisea ras-related pro... 178 2e-69
GN080001_1(GN080001|pid:none) Sequence 604 from Patent WO2009027... 174 2e-69
AB012247_14(AB012247|pid:none) Arabidopsis thaliana genomic DNA,... 173 3e-69
AK341752_1(AK341752|pid:none) Acyrthosiphon pisum ACYPI002607 mR... 168 3e-69
AM270399_3(AM270399|pid:none) Aspergillus niger contig An18c0060... 176 5e-69
AB026654_20(AB026654|pid:none) Arabidopsis thaliana genomic DNA,... 173 5e-69
AB071847_1(AB071847|pid:none) Arabidopsis thaliana mRNA for AtRa... 172 6e-69
CS560164_1(CS560164|pid:none) Sequence 751 from Patent WO2006032... 172 8e-69
CS559666_1(CS559666|pid:none) Sequence 253 from Patent WO2006032... 172 8e-69
AY084266_1(AY084266|pid:none) Arabidopsis thaliana clone 101693 ... 168 2e-67
AY871298_1(AY871298|pid:none) Gekko japonicus GekBS079P mRNA, co... 182 9e-67
AB071849_1(AB071849|pid:none) Arabidopsis thaliana mRNA for AtRa... 165 2e-66
AJ290938_1(AJ290938|pid:none) Plasmodium falciparum mRNA for put... 160 5e-65
Z73940_1(Z73940|pid:none) L.japonicus mRNA for small GTP-binding... 159 8e-65
(O94655) RecName: Full=GTP-binding protein ypt7; &AL035655_4(AL... 160 1e-64
AM910989_4(AM910989|pid:none) Plasmodium knowlesi strain H chrom... 160 1e-64
(Q41640) RecName: Full=Ras-related protein Rab7; &L14928_1(L149... 155 2e-63
BT051534_1(BT051534|pid:none) Medicago truncatula clone MTYF1_F2... 154 3e-63
CR933340_1(CR933340|pid:none) Paramecium tetraurelia, Small GTPa... 158 3e-63
S39566(S39566)rab7 protein - soybean 153 3e-63
GN106087_1(GN106087|pid:none) Sequence 10868 from Patent WO20090... 152 8e-63
AK111495_1(AK111495|pid:none) Oryza sativa Japonica Group cDNA c... 154 1e-62
CR933427_1(CR933427|pid:none) Paramecium tetraurelia, Small GTPa... 156 1e-62
AY644723_1(AY644723|pid:none) Paramecium aurelia Rab7b protein (... 156 1e-62
CR954204_191(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 154 2e-62
(Q43463) RecName: Full=Ras-related protein Rab7; &GN106057_1(GN... 151 2e-62
EF147442_1(EF147442|pid:none) Populus trichocarpa clone WS01231_... 152 3e-62
DQ056142_2(DQ056142|pid:none) Coprinellus disseminatus strain C3... 153 3e-62
AB071851_1(AB071851|pid:none) Arabidopsis thaliana mRNA for AtRa... 155 5e-62
AK105140_1(AK105140|pid:none) Oryza sativa Japonica Group cDNA c... 149 8e-62
FN357506_4(FN357506|pid:none) Schistosoma mansoni genome sequenc... 153 7e-61
(O04157) RecName: Full=Ras-related protein Rab7; Short=... 145 7e-61
AB241225_1(AB241225|pid:none) Pyrsonympha grandis RsSmRab7_1 mRN... 160 7e-61
GN105933_1(GN105933|pid:none) Sequence 10714 from Patent WO20090... 144 2e-60
CR382132_818(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 155 3e-60
AL049482_7(AL049482|pid:none) Arabidopsis thaliana DNA chromosom... 155 4e-60
Z73941_1(Z73941|pid:none) L.japonicus mRNA for small GTP-binding... 143 1e-59
C84606(C84606)probable RAS type GTP-binding protein [imported] -... 145 6e-59
AB241251_1(AB241251|pid:none) Symbiotic protist of Reticuliterme... 154 1e-58
AC155898_18(AC155898|pid:none) Medicago truncatula clone mth2-10... 139 2e-58
AF218311_1(AF218311|pid:none) Entamoeba histolytica Rab7-like GT... 147 3e-58
AB054583_1(AB054583|pid:none) Entamoeba histolytica EhRab7A mRNA... 147 3e-58
CR940352_646(CR940352|pid:none) Theileria annulata strain Ankara... 138 1e-56
CR932542_1(CR932542|pid:none) Paramecium tetraurelia, Small GTPa... 147 4e-56
CU928167_462(CU928167|pid:none) Kluyveromyces thermotolerans str... 138 1e-55
AB002764_1(AB002764|pid:none) Entamoeba histolytica mRNA for Ras... 138 1e-55
(P32939) RecName: Full=GTP-binding protein YPT7; &A44334(A44334... 135 7e-55
CR380951_105(CR380951|pid:none) Candida glabrata strain CBS138 c... 134 9e-55
AC097112_14(AC097112|pid:none) Oryza sativa (japonica cultivar-g... 149 2e-54
CP000498_364(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 122 4e-50
FM992689_622(FM992689|pid:none) Candida dubliniensis CD36 chromo... 120 1e-49
BT030039_1(BT030039|pid:none) Arabidopsis thaliana At4g09720 mRN... 155 3e-49
AL929355_31(AL929355|pid:none) Plasmodium falciparum strain 3D7,... 160 2e-48
(Q9HDY0) RecName: Full=GTP-binding protein ypt71; &AL512562_10(... 109 3e-48
AB071853_1(AB071853|pid:none) Arabidopsis thaliana mRNA for AtRa... 131 2e-45
AB186363_1(AB186363|pid:none) Entamoeba histolytica EhRAB7B gene... 100 1e-43
EZ000492_1(EZ000492|pid:none) TSA: Culex tarsalis Ctar-359 Ras-r... 174 3e-43
BT033774_1(BT033774|pid:none) Zea mays full-length cDNA clone ZM... 177 6e-43
AF474147_1(AF474147|pid:none) Leishmania braziliensis Rab7-like ... 100 2e-42
EU975678_1(EU975678|pid:none) Zea mays clone 496497 ras-related ... 175 2e-42
AY896247_1(AY896247|pid:none) Trichomonas vaginalis strain G3 sm... 107 3e-42
AB186366_1(AB186366|pid:none) Entamoeba histolytica EhRAB7E gene... 106 5e-42
EF507729_1(EF507729|pid:none) Leishmania donovani Rab7 gene, com... 100 4e-41
AY896249_1(AY896249|pid:none) Trichomonas vaginalis strain G3 sm... 101 4e-40
EF650053_1(EF650053|pid:none) Haliotis cracherodii Rab7 mRNA, pa... 147 2e-37
(Q54K69) RecName: Full=Ras-related protein Rab-7B; 112 2e-36
(Q08DE8) RecName: Full=Ras-related protein Rab-7b; &BC123789_1(... 103 6e-36
(Q96AH8) RecName: Full=Ras-related protein Rab-7b; &AY094596_1(... 95 1e-33
BC073279_1(BC073279|pid:none) Xenopus laevis MGC80651 protein, m... 94 6e-33
AY896248_1(AY896248|pid:none) Trichomonas vaginalis strain G3 sm... 81 1e-31
AB024995_1(AB024995|pid:none) Cicer arietinum mRNA for rab-type ... 139 1e-31
BT039064_1(BT039064|pid:none) Zea mays full-length cDNA clone ZM... 136 1e-30
BT036376_1(BT036376|pid:none) Zea mays full-length cDNA clone ZM... 110 1e-30
AB186364_1(AB186364|pid:none) Entamoeba histolytica EhRAB7C gene... 131 4e-29
EF145933_1(EF145933|pid:none) Populus trichocarpa clone WS0114_G... 77 2e-28
BT070553_1(BT070553|pid:none) Picea sitchensis clone WS02735_N04... 80 2e-28
CR933429_1(CR933429|pid:none) Paramecium tetraurelia, Small GTPa... 78 4e-28
AB186369_1(AB186369|pid:none) Entamoeba histolytica EhRAB7H gene... 76 5e-28
AY815497_1(AY815497|pid:none) Schistosoma japonicum SJCHGC05511 ... 80 7e-28
EU954271_1(EU954271|pid:none) Zea mays clone 1460642 ras-related... 77 9e-28
DQ414556_1(DQ414556|pid:none) Suberites domuncula Rab1 gene, com... 77 9e-28
GN105857_1(GN105857|pid:none) Sequence 10638 from Patent WO20090... 80 9e-28
EU284879_1(EU284879|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 79 2e-27
AJ719399_1(AJ719399|pid:none) Gallus gallus mRNA for hypothetica... 125 2e-27
EF146669_1(EF146669|pid:none) Populus trichocarpa clone WS01211_... 79 2e-27
AB172492_1(AB172492|pid:none) Macaca fascicularis brain cDNA clo... 125 2e-27
GN106085_1(GN106085|pid:none) Sequence 10866 from Patent WO20090... 82 3e-27
Y08425_1(Y08425|pid:none) N.plumbaginifolia mRNA for small GTP-b... 78 3e-27
BC123091_1(BC123091|pid:none) Xenopus tropicalis RAB9A, member R... 125 3e-27
(Q39572) RecName: Full=Ras-related protein YPTC6; &JC4108(JC410... 78 3e-27
BT037200_1(BT037200|pid:none) Zea mays full-length cDNA clone ZM... 74 3e-27
BT070586_1(BT070586|pid:none) Picea sitchensis clone WS02737_M21... 78 3e-27
FN320591_1(FN320591|pid:none) Schistosoma japonicum isolate Anhu... 75 3e-27
AP008208_2028(AP008208|pid:none) Oryza sativa (japonica cultivar... 76 4e-27
Z73956_1(Z73956|pid:none) L.japonicus mRNA for small GTP-binding... 82 4e-27
EF145603_1(EF145603|pid:none) Populus trichocarpa clone WS01126_... 77 4e-27
BT039522_1(BT039522|pid:none) Zea mays full-length cDNA clone ZM... 77 6e-27
DQ372931_1(DQ372931|pid:none) Pinus pinaster Rab1 mRNA, complete... 75 6e-27
AY892948_1(AY892948|pid:none) Synthetic construct Homo sapiens c... 124 6e-27
(P51151) RecName: Full=Ras-related protein Rab-9A; Shor... 124 6e-27
(P24408) RecName: Full=Ras-related protein Rab-9A; Shor... 124 6e-27
X56386_1(X56386|pid:none) Canine rab9 mRNA for ras-related GTP-b... 124 6e-27
BT043430_1(BT043430|pid:none) Zea mays full-length cDNA clone ZM... 72 7e-27
BT037150_1(BT037150|pid:none) Zea mays full-length cDNA clone ZM... 74 7e-27
FN357857_2(FN357857|pid:none) Schistosoma mansoni genome sequenc... 77 9e-27
CR932514_1(CR932514|pid:none) Paramecium tetraurelia, Small GTPa... 73 1e-26
AC140549_17(AC140549|pid:none) Medicago truncatula clone mth2-28... 77 1e-26
BT033192_1(BT033192|pid:none) Zea mays full-length cDNA clone ZM... 74 1e-26
EF144402_1(EF144402|pid:none) Populus trichocarpa clone PX0019_E... 76 1e-26
AJ307662_21(AJ307662|pid:none) Oryza sativa genomic DNA fragment... 76 1e-26
BC072859_1(BC072859|pid:none) Xenopus laevis RAB9A, member RAS o... 123 1e-26
GN106065_1(GN106065|pid:none) Sequence 10846 from Patent WO20090... 80 1e-26
BT071594_1(BT071594|pid:none) Picea sitchensis clone WS02926_J12... 76 1e-26
BC123543_1(BC123543|pid:none) Bos taurus RAB9A, member RAS oncog... 122 1e-26
BC124008_1(BC124008|pid:none) Xenopus tropicalis RAB9B, member R... 122 1e-26
AC155344_30(AC155344|pid:none) Brassica rapa subsp. pekinensis c... 74 2e-26
AC084818_20(AC084818|pid:none) Oryza sativa (japonica cultivar-g... 75 2e-26
(Q9FK68) RecName: Full=Ras-related protein RABA1c; &AB012245_16... 82 2e-26
EF144948_1(EF144948|pid:none) Populus trichocarpa clone WS0111_B... 80 2e-26
EF678326_1(EF678326|pid:none) Picea sitchensis clone WS02914_M23... 74 2e-26
AC093018_9(AC093018|pid:none) Oryza sativa chromosome 3 BAC OSJN... 73 2e-26
AF108883_1(AF108883|pid:none) Capsicum annuum small GTP-binding ... 75 2e-26
AK059888_1(AK059888|pid:none) Oryza sativa Japonica Group cDNA c... 75 2e-26
AB015472_10(AB015472|pid:none) Arabidopsis thaliana genomic DNA,... 82 2e-26
GN105853_1(GN105853|pid:none) Sequence 10634 from Patent WO20090... 76 2e-26
GN080089_1(GN080089|pid:none) Sequence 692 from Patent WO2009027... 76 2e-26
BT034664_1(BT034664|pid:none) Zea mays full-length cDNA clone ZM... 75 2e-26
D12548_1(D12548|pid:none) Pisum sativum mRNA for GTP-binding pro... 75 2e-26
GN106155_1(GN106155|pid:none) Sequence 10936 from Patent WO20090... 75 2e-26
GN106117_1(GN106117|pid:none) Sequence 10898 from Patent WO20090... 75 2e-26
Z73932_1(Z73932|pid:none) L.japonicus mRNA for small GTP-binding... 75 2e-26
GN106111_1(GN106111|pid:none) Sequence 10892 from Patent WO20090... 74 2e-26
DQ019037_1(DQ019037|pid:none) Trichomonas vaginalis strain G3 sm... 72 3e-26
AJ810707_1(AJ810707|pid:none) Poa pratensis mRNA for RAB1-like (... 75 3e-26
GN106059_1(GN106059|pid:none) Sequence 10840 from Patent WO20090... 75 3e-26
BT051367_1(BT051367|pid:none) Medicago truncatula clone MTYF1_F2... 74 3e-26
AC183496_25(AC183496|pid:none) Brassica oleracea, *** SEQUENCING... 74 3e-26
AY223134_1(AY223134|pid:none) Schistosoma japonicum SJCHGC02833 ... 75 3e-26
(Q8BHH2) RecName: Full=Ras-related protein Rab-9B; &AB232603_1(... 121 3e-26
GN105993_1(GN105993|pid:none) Sequence 10774 from Patent WO20090... 82 4e-26
(Q39434) RecName: Full=Ras-related protein Rab2BV; &T14566(T145... 74 4e-26
CR933439_1(CR933439|pid:none) Paramecium tetraurelia, Small GTPa... 84 4e-26
(P40392) RecName: Full=Ras-related protein RIC1; &AK243597_1(AK... 74 4e-26
GN106165_1(GN106165|pid:none) Sequence 10946 from Patent WO20090... 74 4e-26
GN106151_1(GN106151|pid:none) Sequence 10932 from Patent WO20090... 74 4e-26
GN105859_1(GN105859|pid:none) Sequence 10640 from Patent WO20090... 74 4e-26
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342... 72 4e-26
AY084274_1(AY084274|pid:none) Arabidopsis thaliana clone 102017 ... 81 5e-26
GN106045_1(GN106045|pid:none) Sequence 10826 from Patent WO20090... 81 5e-26
EU626442_7(EU626442|pid:none) Gossypium raimondii clone BAC 031J... 80 5e-26
(Q40193) RecName: Full=Ras-related protein Rab11C; &Z73951_1(Z7... 74 5e-26
GM977145_1(GM977145|pid:none) Sequence 53 from Patent WO20081456... 75 5e-26
GN106013_1(GN106013|pid:none) Sequence 10794 from Patent WO20090... 74 5e-26
AB186368_1(AB186368|pid:none) Entamoeba histolytica EhRAB7G gene... 75 5e-26
AB241241_1(AB241241|pid:none) Symbiotic protist of Reticuliterme... 75 5e-26
AP008215_340(AP008215|pid:none) Oryza sativa (japonica cultivar-... 82 6e-26
AK071461_1(AK071461|pid:none) Oryza sativa Japonica Group cDNA c... 82 6e-26
AC124143_12(AC124143|pid:none) Oryza sativa (japonica cultivar-g... 82 6e-26
AY632359_2(AY632359|pid:none) Gossypium hirsutum BAC 155C17, com... 80 6e-26
EU069501_1(EU069501|pid:none) Gymnochlora stellata Rab1A1 mRNA, ... 73 6e-26
GN106197_1(GN106197|pid:none) Sequence 10978 from Patent WO20090... 73 6e-26
GN105977_1(GN105977|pid:none) Sequence 10758 from Patent WO20090... 74 6e-26
AF324990_1(AF324990|pid:none) Arabidopsis thaliana AT5g47200 (AT... 73 6e-26
GN106077_1(GN106077|pid:none) Sequence 10858 from Patent WO20090... 73 6e-26
(Q9R0M6) RecName: Full=Ras-related protein Rab-9A; Shor... 120 7e-26
AM433288_1(AM433288|pid:none) Vitis vinifera contig VV78X079268.... 82 8e-26
DQ446594_1(DQ446594|pid:none) Arabidopsis thaliana clone pENTR22... 80 8e-26
EU626443_5(EU626443|pid:none) Gossypioides kirkii clone BAC 096G... 79 8e-26
AB016890_5(AB016890|pid:none) Arabidopsis thaliana genomic DNA, ... 76 8e-26
AL670003_2(AL670003|pid:none) Neurospora crassa DNA linkage grou... 75 8e-26
CR932518_1(CR932518|pid:none) Paramecium tetraurelia, Small GTPa... 73 8e-26
CR933456_1(CR933456|pid:none) Paramecium tetraurelia, Small GTPa... 76 8e-26
AF030183_1(AF030183|pid:none) Entamoeba histolytica GTP-binding ... 75 8e-26
D12549_1(D12549|pid:none) Pisum sativum mRNA for GTP-binding pro... 73 8e-26
GM977161_1(GM977161|pid:none) Sequence 69 from Patent WO20081456... 73 8e-26
EF086613_1(EF086613|pid:none) Picea sitchensis clone WS02920_I20... 73 8e-26
AF325692_1(AF325692|pid:none) Rattus norvegicus strain Sprague-D... 120 9e-26
(Q99P75) RecName: Full=Ras-related protein Rab-9A; Shor... 120 9e-26
AK111561_1(AK111561|pid:none) Oryza sativa Japonica Group cDNA c... 81 1e-25
AM462529_1(AM462529|pid:none) Vitis vinifera contig VV78X101776.... 81 1e-25
AJ245570_1(AJ245570|pid:none) Lycopersicon esculentum mRNA for R... 78 1e-25
BT038097_1(BT038097|pid:none) Zea mays full-length cDNA clone ZM... 76 1e-25
AM920437_2206(AM920437|pid:none) Penicillium chrysogenum Wiscons... 75 1e-25
EF091876_1(EF091876|pid:none) Solanum tuberosum ras-related GTP ... 75 1e-25
GM977157_1(GM977157|pid:none) Sequence 65 from Patent WO20081456... 72 1e-25
(Q40523) RecName: Full=Ras-related protein Rab11A; &L29271_1(L2... 74 1e-25
CR932630_1(CR932630|pid:none) Paramecium tetraurelia, Small GTPa... 75 2e-25
AC010155_2(AC010155|pid:none) Genomic sequence for Arabidopsis t... 79 2e-25
GN106061_1(GN106061|pid:none) Sequence 10842 from Patent WO20090... 74 2e-25
(Q9D1G1) RecName: Full=Ras-related protein Rab-1B; &AB232584_1(... 70 2e-25
BC094846_1(BC094846|pid:none) Homo sapiens RAB13, member RAS onc... 70 2e-25
(Q39222) RecName: Full=Ras-related protein RABA1b; AltName: Full... 79 2e-25
AY893729_1(AY893729|pid:none) Synthetic construct Homo sapiens c... 70 2e-25
(Q39571) RecName: Full=GTP-binding protein YPTC1; &DQ222936_1(D... 72 2e-25
GN105983_1(GN105983|pid:none) Sequence 10764 from Patent WO20090... 71 2e-25
(P22125) RecName: Full=Ras-related protein ORAB-1; &M38393_1(M3... 70 2e-25
CR533462_1(CR533462|pid:none) Homo sapiens full open reading fra... 70 2e-25
(Q5RE13) RecName: Full=Ras-related protein Rab-1B; &(Q9H0U4) Re... 70 2e-25
(P51153) RecName: Full=Ras-related protein Rab-13; AltName: Full... 70 2e-25
(Q58DS5) RecName: Full=Ras-related protein Rab-13; &BT021522_1(... 70 2e-25
AK042020_1(AK042020|pid:none) Mus musculus 3 days neonate thymus... 70 2e-25
AB054582_1(AB054582|pid:none) Entamoeba histolytica EhRab5 gene ... 73 2e-25
B86153(B86153) ARA-5 [imported] - Arabidopsis thaliana &U89959_... 72 3e-25
BT035344_1(BT035344|pid:none) Zea mays full-length cDNA clone ZM... 82 3e-25
AY690483_1(AY690483|pid:none) Triticum aestivum rab GTP-binding ... 82 3e-25
AJ851582_1(AJ851582|pid:none) Gallus gallus mRNA for hypothetica... 77 3e-25
BC082421_1(BC082421|pid:none) Xenopus laevis hypothetical LOC494... 77 3e-25
AY220456_1(AY220456|pid:none) Limulus polyphemus rab11-2 mRNA, c... 77 3e-25
BT084300_1(BT084300|pid:none) Zea mays full-length cDNA clone ZM... 77 3e-25
(P22129) RecName: Full=Ras-related protein Rab-11B; AltName: Ful... 77 3e-25
AF127669_1(AF127669|pid:none) Mus musculus small GTPase (Rab11a)... 77 3e-25
AM432734_2(AM432734|pid:none) Vitis vinifera contig VV78X219500.... 75 3e-25
CR382137_251(CR382137|pid:none) Debaryomyces hansenii strain CBS... 71 3e-25
S34253(S34253) GTP-binding protein, ras-related - common tobacco... 72 3e-25
GN106103_1(GN106103|pid:none) Sequence 10884 from Patent WO20090... 74 3e-25
AM910992_200(AM910992|pid:none) Plasmodium knowlesi strain H chr... 72 3e-25
AY894025_1(AY894025|pid:none) Synthetic construct Homo sapiens c... 77 4e-25
BT039216_1(BT039216|pid:none) Zea mays full-length cDNA clone ZM... 82 4e-25
EF086736_1(EF086736|pid:none) Picea sitchensis clone WS02731_C01... 82 4e-25
AM471469_2(AM471469|pid:none) Vitis vinifera contig VV78X014719.... 78 4e-25
EU244432_1(EU244432|pid:none) Capra hircus RAB11B (rab11b) mRNA,... 77 4e-25
EF560724_1(EF560724|pid:none) Homo sapiens clone DKFZp564C1023 R... 77 4e-25
(P46638) RecName: Full=Ras-related protein Rab-11B; &A55005(A55... 77 4e-25
CR541691_1(CR541691|pid:none) Homo sapiens full open reading fra... 77 4e-25
(O35509) RecName: Full=Ras-related protein Rab-11B; &(Q15907) R... 77 4e-25
GN106149_1(GN106149|pid:none) Sequence 10930 from Patent WO20090... 75 4e-25
(P34140) RecName: Full=Ras-related protein Rab-1B; 72 4e-25
AE014297_3082(AE014297|pid:none) Drosophila melanogaster chromos... 70 4e-25
(Q5KTJ6) RecName: Full=Ras-related protein Rab-13; &AB158369_1(... 70 4e-25
AK297498_1(AK297498|pid:none) Homo sapiens cDNA FLJ61134 complet... 77 4e-25
BT059706_1(BT059706|pid:none) Salmo salar clone ssal-rgf-522-243... 117 5e-25
FN357538_13(FN357538|pid:none) Schistosoma mansoni genome sequen... 70 5e-25
EU162609_23(EU162609|pid:none) Cleome spinosa clone contig83 BAC... 74 5e-25
(P28187) RecName: Full=Ras-related protein ARA-4; &AC004450_5(A... 76 5e-25
AM484190_1(AM484190|pid:none) Vitis vinifera contig VV78X052697.... 72 5e-25
BC045014_1(BC045014|pid:none) Xenopus laevis RAB1, member RAS on... 70 5e-25
AC183493_34(AC183493|pid:none) Brassica oleracea Contig B, compl... 70 5e-25
AY060495_1(AY060495|pid:none) Arabidopsis thaliana AT4g17530/dl4... 70 5e-25
(Q5R4W9) RecName: Full=Ras-related protein Rab-9B; &CR861121_1(... 117 6e-25
CS560194_1(CS560194|pid:none) Sequence 781 from Patent WO2006032... 70 7e-25
BT064711_1(BT064711|pid:none) Zea mays full-length cDNA clone ZM... 80 7e-25
AF532625_1(AF532625|pid:none) Glycine max GTP-binding protein mR... 78 7e-25
(Q2TA29) RecName: Full=Ras-related protein Rab-11A; &BC111143_1... 77 7e-25
BC087498_1(BC087498|pid:none) Xenopus laevis hypothetical LOC496... 77 7e-25
BC075268_1(BC075268|pid:none) Xenopus tropicalis RAB11B, member ... 77 7e-25
JC2487(JC2487) GTP-binding protein H-YPT3 - human &X79780_1(X79... 76 7e-25
BC048889_1(BC048889|pid:none) Danio rerio RAB11B, member RAS onc... 76 7e-25
(Q40723) RecName: Full=Ras-related protein RGP2; AltName: Full=G... 75 7e-25
BT068335_1(BT068335|pid:none) Zea mays full-length cDNA clone ZM... 70 7e-25
CR932582_1(CR932582|pid:none) Paramecium tetraurelia, Small GTPa... 81 7e-25
CU638743_340(CU638743|pid:none) Podospora anserina genomic DNA c... 75 7e-25
AM269968_23(AM269968|pid:none) Aspergillus niger contig An01c021... 75 7e-25
S06147(S06147;S03189)GTP-binding protein rab1B - rat 70 7e-25
CS559708_1(CS559708|pid:none) Sequence 295 from Patent WO2006032... 70 7e-25
GM977167_1(GM977167|pid:none) Sequence 75 from Patent WO20081456... 72 7e-25
AK036056_1(AK036056|pid:none) Mus musculus 16 days neonate cereb... 75 7e-25
BT069763_1(BT069763|pid:none) Zea mays full-length cDNA clone ZM... 81 9e-25
CR536494_1(CR536494|pid:none) Homo sapiens full open reading fra... 77 9e-25
BC041250_1(BC041250|pid:none) Xenopus laevis RAB11B, member RAS ... 77 9e-25
BC152630_1(BC152630|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 75 9e-25
BC076247_1(BC076247|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 75 9e-25
GN106119_1(GN106119|pid:none) Sequence 10900 from Patent WO20090... 75 9e-25
CR933412_1(CR933412|pid:none) Paramecium tetraurelia, Small GTPa... 74 9e-25
DQ214474_1(DQ214474|pid:none) Taeniopygia guttata clone 0063P003... 70 9e-25
(P34139) RecName: Full=Ras-related protein Rab-1A; 70 9e-25
GM977149_1(GM977149|pid:none) Sequence 57 from Patent WO20081456... 69 9e-25
CR762386_2(CR762386|pid:none) Zebrafish DNA sequence from clone ... 75 9e-25
EF085830_1(EF085830|pid:none) Picea sitchensis clone WS0286_P20 ... 72 1e-24
AB470307_1(AB470307|pid:none) Nicotiana tabacum NtRab11D mRNA fo... 69 1e-24
U00986_1(U00986|pid:none) Aplysia californica Rab3 mRNA, complet... 73 1e-24
BT045814_1(BT045814|pid:none) Salmo salar clone ssal-rgf-532-060... 77 1e-24
BC081187_1(BC081187|pid:none) Xenopus laevis MGC84419 protein, m... 77 1e-24
AY815506_1(AY815506|pid:none) Schistosoma japonicum SJCHGC02859 ... 75 1e-24
DQ286060_1(DQ286060|pid:none) Hydra vulgaris RAS related GTP-bin... 71 1e-24
BT078127_1(BT078127|pid:none) Lepeophtheirus salmonis Pacific fo... 70 1e-24
D12547_1(D12547|pid:none) Pisum sativum mRNA for GTP-binding pro... 70 1e-24
(Q559X6) RecName: Full=Ras-related protein Rab-2B; &AC116921_8(... 70 1e-24
CR932504_1(CR932504|pid:none) Paramecium tetraurelia, Small GTPa... 74 1e-24
AL021710_9(AL021710|pid:none) Arabidopsis thaliana DNA chromosom... 77 1e-24
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related... 70 1e-24
(P62820) RecName: Full=Ras-related protein Rab-1A; AltName: Full... 70 1e-24
AL606522_3(AL606522|pid:none) Mouse DNA sequence from clone RP23... 70 1e-24
BC009227_1(BC009227|pid:none) Homo sapiens RAB13, member RAS onc... 69 1e-24
AL672174_5(AL672174|pid:none) Mouse DNA sequence from clone RP23... 115 2e-24
CR932657_1(CR932657|pid:none) Paramecium tetraurelia, Small GTPa... 74 2e-24
CR933476_1(CR933476|pid:none) Paramecium tetraurelia, Small GTPa... 74 2e-24
AF081681_1(AF081681|pid:none) Dictyostelium discoideum GTP bindi... 72 2e-24
(Q40191) RecName: Full=Ras-related protein Rab11A; &Z73949_1(Z7... 71 2e-24
DQ414564_1(DQ414564|pid:none) Suberites domuncula Rab11 gene, co... 75 2e-24
AK071303_1(AK071303|pid:none) Oryza sativa Japonica Group cDNA c... 73 2e-24
(P36412) RecName: Full=Ras-related protein Rab-11A; &U02925_1(U... 73 2e-24
(Q54FK7) RecName: Full=Ras-related protein RabL; 72 2e-24
CR932686_1(CR932686|pid:none) Paramecium tetraurelia, Small GTPa... 71 2e-24
CP001323_241(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 69 2e-24
BT077861_1(BT077861|pid:none) Lepeophtheirus salmonis Pacific fo... 70 2e-24
(Q2HJH2) RecName: Full=Ras-related protein Rab-1B; &BC105393_1(... 70 2e-24
(P10536) RecName: Full=Ras-related protein Rab-1B; &X13905_1(X1... 70 2e-24
AC069472_3(AC069472|pid:none) Arabidopsis thaliana chromosome 3 ... 76 2e-24
EF083999_1(EF083999|pid:none) Picea sitchensis clone WS0281_E05 ... 72 2e-24
BT036850_1(BT036850|pid:none) Zea mays full-length cDNA clone ZM... 81 2e-24
EU965206_1(EU965206|pid:none) Zea mays clone 284484 ras-related ... 81 2e-24
(Q01111) RecName: Full=Ras-related protein YPT3; &S23523(S23523... 79 2e-24
AC007508_21(AC007508|pid:none) Genomic sequence for Arabidopsis ... 75 2e-24
(Q05975) RecName: Full=Ras-related protein Rab-2; &S38341(S3834... 68 2e-24
BT076429_1(BT076429|pid:none) Caligus rogercresseyi clone crog-e... 70 2e-24
BT077899_1(BT077899|pid:none) Lepeophtheirus salmonis Pacific fo... 69 2e-24
AB241229_1(AB241229|pid:none) Pyrsonympha grandis RsSmRab11_1 mR... 70 2e-24
DQ157704_1(DQ157704|pid:none) Aiptasia pulchella Rab11 protein m... 77 3e-24
BT077510_1(BT077510|pid:none) Lepeophtheirus salmonis Pacific fo... 76 3e-24
BC055141_1(BC055141|pid:none) Danio rerio zgc:63565, mRNA (cDNA ... 75 3e-24
CP001160_488(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 75 3e-24
AC140545_16(AC140545|pid:none) Medicago truncatula clone mth2-11... 74 3e-24
BC066502_1(BC066502|pid:none) Danio rerio RAB32, member RAS onco... 73 3e-24
AF072935_1(AF072935|pid:none) Rattus norvegicus small GTP-bindin... 71 3e-24
BC071068_1(BC071068|pid:none) Xenopus laevis MGC78967 protein, m... 68 3e-24
CR933417_1(CR933417|pid:none) Paramecium tetraurelia, Small GTPa... 73 3e-24
(P36409) RecName: Full=Ras-related protein Rab-2A; 69 3e-24
GM977163_1(GM977163|pid:none) Sequence 71 from Patent WO20081456... 69 3e-24
(Q52NJ2) RecName: Full=Ras-related protein Rab-1A; &AY996813_1(... 70 3e-24
(Q05974) RecName: Full=Ras-related protein Rab-1A; &S38339(S383... 70 3e-24
AK151085_1(AK151085|pid:none) Mus musculus bone marrow macrophag... 69 3e-24
CP000587_71(CP000587|pid:none) Ostreococcus lucimarinus CCE9901 ... 68 3e-24
AB232608_1(AB232608|pid:none) Mus musculus mRNA for Rab13, compl... 68 3e-24
(Q9DD03) RecName: Full=Ras-related protein Rab-13; &AK002303_1(... 68 3e-24
FN315276_1(FN315276|pid:none) Schistosoma japonicum isolate Anhu... 75 3e-24
FN357335_32(FN357335|pid:none) Schistosoma mansoni genome sequen... 71 3e-24
CR548612_89(CR548612|pid:none) Paramecium tetraurelia macronucle... 71 4e-24
D12542_1(D12542|pid:none) Pisum sativum mRNA for GTP-binding pro... 70 4e-24
BT051415_1(BT051415|pid:none) Medicago truncatula clone MTYF1_F2... 70 4e-24
CR932581_1(CR932581|pid:none) Paramecium tetraurelia, Small GTPa... 73 4e-24
AY220749_1(AY220749|pid:none) Limulus polyphemus Rab11-1a mRNA, ... 77 4e-24
BT049157_1(BT049157|pid:none) Salmo salar clone ssal-rgb2-591-24... 75 4e-24
DQ215564_1(DQ215564|pid:none) Taeniopygia guttata clone 0061P000... 70 4e-24
BC049531_1(BC049531|pid:none) Danio rerio RAB32, member RAS onco... 73 4e-24
AB197058_1(AB197058|pid:none) Entamoeba histolytica gene for sma... 71 4e-24
AK150346_1(AK150346|pid:none) Mus musculus bone marrow macrophag... 70 4e-24
AK002631_1(AK002631|pid:none) Mus musculus adult male kidney cDN... 70 4e-24
CR933401_1(CR933401|pid:none) Paramecium tetraurelia, Small GTPa... 77 4e-24
D38625(D38625)GTP-binding protein o-rab1 - electric ray (Discopy... 70 4e-24
BT057068_1(BT057068|pid:none) Salmo salar clone ssal-eve-570-039... 70 4e-24
CR382130_329(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 70 4e-24
(P34141) RecName: Full=Ras-related protein RabA; 70 4e-24
AM494964_85(AM494964|pid:none) Leishmania braziliensis chromosom... 74 4e-24
CR933443_1(CR933443|pid:none) Paramecium tetraurelia, Small GTPa... 75 5e-24
AB013395_22(AB013395|pid:none) Arabidopsis thaliana genomic DNA,... 72 5e-24
AY088624_1(AY088624|pid:none) Arabidopsis thaliana clone 8545 mR... 70 5e-24
AL035708_16(AL035708|pid:none) Arabidopsis thaliana DNA chromoso... 70 5e-24
U46926_1(U46926|pid:none) Arabidopsis thaliana GTP-binding prote... 70 5e-24
Z73955_1(Z73955|pid:none) L.japonicus mRNA for small GTP-binding... 76 5e-24
AC138015_11(AC138015|pid:none) Medicago truncatula clone mth2-34... 79 5e-24
D12546_1(D12546|pid:none) Pisum sativum mRNA for GTP-binding pro... 79 5e-24
(Q40194) RecName: Full=Ras-related protein Rab11D; &Z73952_1(Z7... 78 5e-24
AY220748_1(AY220748|pid:none) Limulus polyphemus Rab11-1c mRNA, ... 77 5e-24
EU952347_1(EU952347|pid:none) Zea mays clone 1278162 ras-related... 74 5e-24
(Q06AU6) RecName: Full=Ras-related protein Rab-5A; &DQ917629_1(... 70 5e-24
BT076392_1(BT076392|pid:none) Caligus rogercresseyi clone crog-e... 69 5e-24
BT077989_1(BT077989|pid:none) Lepeophtheirus salmonis Pacific fo... 69 5e-24
EF147099_1(EF147099|pid:none) Populus trichocarpa clone WS01227_... 71 5e-24
AJ278659_1(AJ278659|pid:none) Aspergillus niger srgB gene for a ... 71 5e-24
Z73931_1(Z73931|pid:none) L.japonicus mRNA for small GTP-binding... 72 5e-24
AC069473_2(AC069473|pid:none) Arabidopsis thaliana chromosome 3 ... 75 7e-24
(Q40195) RecName: Full=Ras-related protein Rab11E; &Z73953_1(Z7... 78 7e-24
BC047803_1(BC047803|pid:none) Danio rerio RAB5A, member RAS onco... 69 7e-24
DQ214475_1(DQ214475|pid:none) Taeniopygia guttata clone 0058P004... 68 7e-24
AC159407_36(AC159407|pid:none) Trypanosoma brucei chromosome 8 c... 72 7e-24
T21442(T21442) hypothetical protein F26H9.6 - Caenorhabditis ele... 69 7e-24
BT052509_1(BT052509|pid:none) Medicago truncatula clone MTYFD_FE... 69 7e-24
BX647601_1(BX647601|pid:none) Homo sapiens mRNA; cDNA DKFZp313C1... 67 7e-24
CR932703_1(CR932703|pid:none) Paramecium tetraurelia, Small GTPa... 75 7e-24
(Q92928) RecName: Full=Putative Ras-related protein Rab-1C; ... 69 7e-24
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ... 68 7e-24
AF013572_1(AF013572|pid:none) Bombyx mori small GTP-binding prot... 68 7e-24
D01027_1(D01027|pid:none) Arabidopsis thaliana mRNA for small GT... 72 7e-24
AK129477_1(AK129477|pid:none) Mus musculus mRNA for mKIAA3012 pr... 68 9e-24
AY815772_1(AY815772|pid:none) Schistosoma japonicum SJCHGC09130 ... 75 9e-24
AM459225_1(AM459225|pid:none) Vitis vinifera contig VV78X087264.... 69 9e-24
(Q40520) RecName: Full=Ras-related protein Rab11C; &L29268_1(L2... 70 9e-24
AF014120_1(AF014120|pid:none) Strongylocentrotus purpuratus GTP-... 70 9e-24
AF532626_1(AF532626|pid:none) Glycine max small GTP-binding prot... 78 9e-24
FN314406_1(FN314406|pid:none) Schistosoma japonicum isolate Anhu... 75 9e-24
FN314407_1(FN314407|pid:none) Schistosoma japonicum isolate Anhu... 75 9e-24
AY904354_1(AY904354|pid:none) Gracilariopsis lemaneiformis small... 74 9e-24
AJ968959_1(AJ968959|pid:none) Mus musculus mRNA for RAB14 protei... 69 9e-24
EF084887_1(EF084887|pid:none) Picea sitchensis clone WS0292_K24 ... 69 9e-24
(Q39570) RecName: Full=GTP-binding protein YPTC4; &JC4106(JC410... 68 9e-24
J02998_1(J02998|pid:none) Rat ras-related protein mRNA, clone NT... 70 9e-24
AY439005_1(AY439005|pid:none) Fucus distichus Rab family GTPase ... 70 9e-24
(Q01890) RecName: Full=Ras-like GTP-binding protein YPT1; &JC53... 70 9e-24
(Q550H6) RecName: Full=Ras-related protein Rab-11C; 80 1e-23
L49400_1(L49400|pid:none) Loligo pealii Rab3 gene, complete cds. 70 1e-23
(P25228) RecName: Full=Ras-related protein Rab-3; &AB112932_1(A... 69 1e-23
AF468652_1(AF468652|pid:none) Homo sapiens RAB2B mRNA, complete ... 67 1e-23
AB035354_1(AB035354|pid:none) Drosophila melanogaster mRNA for D... 76 1e-23
BX538352_67(BX538352|pid:none) Cryptosporidium parvum chromosome... 71 1e-23
(Q0IIG7) RecName: Full=Ras-related protein Rab-5A; &BC122651_1(... 69 1e-23
(P18066) RecName: Full=Ras-related protein Rab-5A; &(P61271) Re... 69 1e-23
EF710656_1(EF710656|pid:none) Glyptapanteles indiensis clone BAC... 68 1e-23
CR933420_1(CR933420|pid:none) Paramecium tetraurelia, Small GTPa... 68 1e-23
CR933472_1(CR933472|pid:none) Paramecium tetraurelia, Small GTPa... 84 1e-23
L29272_1(L29272|pid:none) Nicotiana tabacum SR1 Nt-rab11e mRNA, ... 75 1e-23
AF101310_4(AF101310|pid:none) Caenorhabditis elegans cosmid C39F... 70 1e-23
AF244545_1(AF244545|pid:none) Aspergillus awamori YptA (yptA) ge... 70 1e-23
GM977155_1(GM977155|pid:none) Sequence 63 from Patent WO20081456... 68 1e-23
BC054719_1(BC054719|pid:none) Mus musculus RAB2B, member RAS onc... 67 2e-23
BT075523_1(BT075523|pid:none) Osmerus mordax clone omor-rgc-502-... 68 2e-23
(P59279) RecName: Full=Ras-related protein Rab-2B; &AB232586_1(... 67 2e-23
BT056265_1(BT056265|pid:none) Drosophila melanogaster FI09227 fu... 76 2e-23
BC107443_1(BC107443|pid:none) Rattus norvegicus RAB2B, member RA... 67 2e-23
CR933446_1(CR933446|pid:none) Paramecium tetraurelia, Small GTPa... 74 2e-23
Z73937_1(Z73937|pid:none) L.japonicus mRNA for small GTP-binding... 69 2e-23
AL161545_37(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 69 2e-23
(P61019) RecName: Full=Ras-related protein Rab-2A; &(P61105) Re... 68 2e-23
(Q90965) RecName: Full=Ras-related protein Rab-2A; &S52325(S523... 68 2e-23
BT043649_1(BT043649|pid:none) Salmo salar clone HM5_0924 RAB2A, ... 68 2e-23
(P53994) RecName: Full=Ras-related protein Rab-2A; &AB232585_1(... 68 2e-23
E71440(E71440)GTP-binding protein RAB2A - Arabidopsis thaliana 69 2e-23
BX649327_6(BX649327|pid:none) Zebrafish DNA sequence from clone ... 71 2e-23
(P33723) RecName: Full=GTP-binding protein ypt1; &AL356324_15(A... 71 2e-23
FN357297_79(FN357297|pid:none) Schistosoma mansoni genome sequen... 74 2e-23
EU365390_1(EU365390|pid:none) Euplotes octocarinatus Rab GTPase ... 70 2e-23
AK060095_1(AK060095|pid:none) Oryza sativa Japonica Group cDNA c... 77 2e-23
CR380957_399(CR380957|pid:none) Candida glabrata strain CBS138 c... 76 2e-23
BC045466_1(BC045466|pid:none) Danio rerio RAB5C, member RAS onco... 67 2e-23
DQ525204_1(DQ525204|pid:none) Bombyx mori ras-related GTP-bindin... 69 2e-23
(Q98932) RecName: Full=Ras-related protein Rab-5C; AltName: Full... 67 2e-23
CR954205_238(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 70 2e-23
FN357536_6(FN357536|pid:none) Schistosoma mansoni genome sequenc... 70 2e-23
AF003139_1(AF003139|pid:none) Caenorhabditis elegans cosmid F53G... 75 2e-23
AM494947_100(AM494947|pid:none) Leishmania braziliensis chromoso... 77 2e-23
AE016815_434(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 74 2e-23
AC104285_6(AC104285|pid:none) Oryza sativa (japonica cultivar-gr... 67 2e-23
CR932644_1(CR932644|pid:none) Paramecium tetraurelia, Small GTPa... 75 2e-23
GN106121_1(GN106121|pid:none) Sequence 10902 from Patent WO20090... 71 2e-23
AJ277108_1(AJ277108|pid:none) Trichoderma reesei ypt1 gene for s... 71 2e-23
CP000588_238(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 68 2e-23
BC040143_1(BC040143|pid:none) Homo sapiens RAB5B, member RAS onc... 67 3e-23
AB232594_1(AB232594|pid:none) Mus musculus mRNA for Rab5B, compl... 67 3e-23
EU958646_1(EU958646|pid:none) Zea mays clone 1707478 ras-related... 80 3e-23
BT051823_1(BT051823|pid:none) Medicago truncatula clone MTYF5_F6... 75 3e-23
AY893731_1(AY893731|pid:none) Synthetic construct Homo sapiens c... 67 3e-23
BC091014_1(BC091014|pid:none) Xenopus tropicalis muscle RAS onco... 70 3e-23
BC094134_1(BC094134|pid:none) Xenopus laevis cDNA clone MGC:1150... 69 3e-23
AY324134_1(AY324134|pid:none) Babesia bovis Rab1a mRNA, complete... 69 3e-23
(P20339) RecName: Full=Ras-related protein Rab-5A; &AF464088_1(... 68 3e-23
CR536482_1(CR536482|pid:none) Homo sapiens full open reading fra... 67 3e-23
(P61020) RecName: Full=Ras-related protein Rab-5B; &(P61021) Re... 67 3e-23
S71559(S71559) GTP-binding protein rab2 - soybean &U32185_1(U32... 69 3e-23
AC161399_25(AC161399|pid:none) Medicago truncatula chromosome 2 ... 69 3e-23
DQ443136_1(DQ443136|pid:none) Bombyx mori small GTP binding prot... 67 3e-23
CR933405_1(CR933405|pid:none) Paramecium tetraurelia, Small GTPa... 73 3e-23
AL161545_36(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 67 3e-23
L21011_1(L21011|pid:none) Dictyostelium discoideum RabA mRNA, 3'... 70 3e-23
DQ455596_1(DQ455596|pid:none) Phaseolus vulgaris Rab7 mRNA, part... 111 3e-23
(Q96E17) RecName: Full=Ras-related protein Rab-3C; &AY026936_1(... 69 3e-23
AC159435_18(AC159435|pid:none) Trypanosoma brucei chromosome 8 c... 75 3e-23

>BT045800_1(BT045800|pid:none) Salmo salar clone ssal-rgf-531-287
Ras-related protein Rab-7a putative mRNA, complete cds.
Length = 205

Score = 186 bits (473), Expect(2) = 3e-75
Identities = 95/134 (70%), Positives = 105/134 (78%), Gaps = 2/134 (1%)
Frame = +1

Query: 490 QSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLE 669
QSLGVAFYRGADCCVL YDV TF+ LDSWRDEFLIQA PRDPDNFPFVVLGNKIDLE
Sbjct: 71 QSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPDNFPFVVLGNKIDLE 130

Query: 670 NQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLEDGL-VFPIPTNI 846
N R V+ KRA +WC SK NIPYFETSAKEAINV+QAFQTIARNA+K E + + P I
Sbjct: 131 N-RQVTTKRAQAWCASKNNIPYFETSAKEAINVDQAFQTIARNALKQESEVETYDFPDQI 189

Query: 847 QVIPE-PQPAKSGC 885
++ E P + GC
Sbjct: 190 KLRDERPSSSSDGC 203

Score = 119 bits (299), Expect(2) = 3e-75
Identities = 58/67 (86%), Positives = 62/67 (92%)
Frame = +3

Query: 309 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERF 488
VIILGDSGVGKTSLMNQYVNK+FSNQYKATIGADFLTKE+MVDDR+VTMQIWDTAGQERF
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70

Query: 489 PIIRCCF 509
+ F
Sbjct: 71 QSLGVAF 77

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,205,427,634
Number of extensions: 20266544
Number of successful extensions: 73503
Number of sequences better than 10.0: 3277
Number of HSP's gapped: 70159
Number of HSP's successfully gapped: 5879
Length of query: 327
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 198
Effective length of database: 633,664,753
Effective search space: 125465621094
Effective search space used: 125465621094
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.71 gvh: 0.48 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U15192-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 11
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0