| Contig-U15190-1 |
| Contig ID |
Contig-U15190-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
497 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
3686516 |
| End point |
3686029 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
3 |
| Link to clone list |
U15190 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
Query= Contig-U15190-1 (Contig-U15190-1Q)
/CSM_Contig/Contig-U15190-1Q.Seq.d
(497 letters)
Database: CSM
8402 sequences; 8,075,542 total letters
Score E
Sequences producing significant alignments: (bits) Value
Contig-U15190-1 (Contig-U15190-1Q) /CSM_Contig/Conti... 924 0.0
Contig-U16560-1 (Contig-U16560-1Q) /CSM_Contig/Conti... 250 2e-66
Contig-U16561-1 (Contig-U16561-1Q) /CSM_Contig/Conti... 196 2e-50
Contig-U04461-1 (Contig-U04461-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U12584-1 (Contig-U12584-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U12060-1 (Contig-U12060-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U12948-1 (Contig-U12948-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U11233-1 (Contig-U11233-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U06930-1 (Contig-U06930-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U06812-1 (Contig-U06812-1Q) /CSM_Contig/Conti... 36 0.049
>Contig-U15190-1 (Contig-U15190-1Q) /CSM_Contig/Contig-U15190-1Q.Seq.d
Length = 497
Score = 924 bits (466), Expect = 0.0
Identities = 480/487 (98%)
Strand = Plus / Plus
Query: 1 gttaacctccttagaaaacagatcaagatgcaaatcttcgttaaaaccttaactggtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttaacctccttagaaaacagatcaagatgcaaatcttcgttaaaaccttaactggtaaa 60
Query: 61 accatcactctcgaagttgaaggttcagacaacatcgaaaacgtcaaagccaagattcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accatcactctcgaagttgaaggttcagacaacatcgaaaacgtcaaagccaagattcaa 120
Query: 121 gacaaagaaggtatcccaccagatcaacaacgtcttatctttgccggtaaacaattagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacaaagaaggtatcccaccagatcaacaacgtcttatctttgccggtaaacaattagaa 180
Query: 181 gatggtcgtactttatccgattataacatccaaaaggaatcaaccctccacttagtttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatggtcgtactttatccgattataacatccaaaaggaatcaaccctccacttagtttta 240
Query: 241 agattaagaggtggtattgaaccatccctcgtcattcttgcccgtaaatacaaatgtgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agattaagaggtggtattgaaccatccctcgtcattcttgcccgtaaatacaaatgtgac 300
Query: 301 aaaatgatttgcagaaaatgttatgctcgtttacacccacgtgctgttaactgtcgtaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaatgatttgcagaaaatgttatgctcgtttacacccacgtgctgttaactgtcgtaag 360
Query: 361 aagaaatgtggtcactctaacaatttaagaccaaagaagaagttacttaaataaattctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagaaatgtggtcactctaacaatttaagaccaaagaagaagttacttaaataaattctt 420
Query: 421 aaagaaattactnnnnnnngtatactattcctcaaaataataaaaaatgtcttttatttt 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaagaaattactaaaaaaagtatactattcctcaaaataataaaaaatgtcttttatttt 480
Query: 481 tttattt 487
|||||||
Sbjct: 481 tttattt 487
>Contig-U16560-1 (Contig-U16560-1Q) /CSM_Contig/Contig-U16560-1Q.Seq.d
Length = 6254
Score = 250 bits (126), Expect = 2e-66
Identities = 204/230 (88%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| |||||||| | ||||||||||| |||||| | ||||||||||||||
Sbjct: 3008 atgcaaatctttgttaaaactctcactggtaaaacaatcactttagaagttgaaggttct 3067
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| ||||| ||||| || ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 3068 gataacattgaaaatgttaaagccaagatccaagataaagaaggtattccaccagatcaa 3127
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
||| | | |||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 3128 caaagattaatctttgccggtaaacaattagaagatggtcgtactctctcagattataac 3187
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| |||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 3188 attcaaaaggaatcaactcttcatttagttttaagattaagaggtggtat 3237
Score = 218 bits (110), Expect = 6e-57
Identities = 200/230 (86%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| |||||||| | ||||||||||| ||||| | || |||||||| ||
Sbjct: 3236 atgcaaatctttgttaaaactctcactggtaaaactatcaccttggaggttgaaggatct 3295
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| || || ||||| || |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 3296 gataatattgaaaatgttaaagccaaaattcaagataaagaaggtattccaccagatcaa 3355
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
|||||||| || ||||| ||||||||||||||||||||||||||| | || ||||| ||
Sbjct: 3356 caacgtctcatttttgctggtaaacaattagaagatggtcgtactctctctgattacaat 3415
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3416 attcaaaaagaatcaactctccacttagttttaagattaagaggtggtat 3465
Score = 202 bits (102), Expect = 4e-52
Identities = 198/230 (86%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| |||||||| ||||| |||||||| ||||| | ||||| ||||||
Sbjct: 1388 atgcaaatctttgttaaaactttaacaggtaaaactatcaccttggaagtcgaaggtagt 1447
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| ||||| ||||| || |||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 1448 gataacattgaaaatgttaaagccaaaatccaagacaaagaaggtattccaccagatcaa 1507
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
|||||||| || || || ||||||||||||||||||||||||||| | || ||||| |||
Sbjct: 1508 caacgtctcattttcgctggtaaacaattagaagatggtcgtactctctctgattacaac 1567
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||||||||| || ||||| |||||| | |||||||||||||||||
Sbjct: 1568 attcaaaaggaatccactctccatttagttctcagattaagaggtggtat 1617
Score = 196 bits (99), Expect = 2e-50
Identities = 195/227 (85%)
Strand = Plus / Plus
Query: 31 caaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttcagac 90
||||| || |||||||| | ||||||||||||||||| | |||||||||||| |||
Sbjct: 1 caaatttttgttaaaactctcactggtaaaaccatcacattggaagttgaaggtagtgac 60
Query: 91 aacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaacaa 150
||||| ||||| ||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 61 aacattgaaaatgtcaaggctaaaattcaagacaaagaaggtattccaccagatcaacaa 120
Query: 151 cgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataacatc 210
| | |||||||| ||||||||||||||||||||||||||| | || ||||| |||||
Sbjct: 121 agattaatctttgctggtaaacaattagaagatggtcgtactctttctgattacaacatt 180
Query: 211 caaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
||||||||||| || ||||| |||||| | |||||||||||||||||
Sbjct: 181 caaaaggaatccactctccatttagttcttagattaagaggtggtat 227
Score = 196 bits (99), Expect = 2e-50
Identities = 199/231 (86%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| |||||||| ||||| |||||||| |||||| | |||||||||||||||
Sbjct: 3464 atgcaaatctttgttaaaactttaacaggtaaaactatcactttggaagttgaaggttca 3523
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| || || ||||| || |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 3524 gataatattgaaaatgtaaaagccaaaattcaagataaagaaggtatcccaccagatcaa 3583
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccga-ttataa 206
||| | | || || || ||||||||||||||||||||||||||| | || || ||| ||
Sbjct: 3584 caaagattaattttcgctggtaaacaattagaagatggtcgtactctctctgatttacaa 3643
Query: 207 catccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
||| ||||||||||| || ||||| ||||| | |||||||||||||||||
Sbjct: 3644 cattcaaaaggaatccactctccatttagtcctcagattaagaggtggtat 3694
Score = 196 bits (99), Expect = 2e-50
Identities = 181/207 (87%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 52 actggtaaaaccatcactctcgaagttgaaggttcagacaa-catcgaaaacgtcaaagc 110
|||||||||||||| || ||||||||||||||| |||| ||| || || || ||| |
Sbjct: 3946 actggtaaaaccattacactcgaagttgaaggtagtgacattcattgagaatgtaaaaac 4005
Query: 111 caagattcaagacaaagaaggtatcccaccagatcaacaacgtcttatctttgccggtaa 170
|| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 4006 aaaaattcaagacaaagaaggtatcccaccagatcaacaacgtctcattttcgccggtaa 4065
Query: 171 acaattagaagatggtcgtactttatccgattataacatccaaaaggaatcaaccctcca 230
|||||||||||||||||||||| | || ||||| ||||| |||||||||||||| |||||
Sbjct: 4066 acaattagaagatggtcgtactctttctgattacaacattcaaaaggaatcaacactcca 4125
Query: 231 cttagttttaagattaagaggtggtat 257
|||||| | |||||||||||||||||
Sbjct: 4126 tttagttctcagattaagaggtggtat 4152
Score = 194 bits (98), Expect = 9e-50
Identities = 197/230 (85%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| || |||||||| |||||||| |||||||| | ||||| ||||||||
Sbjct: 1160 atgcaaatctttgtaaaaaccttgactggtaagaccatcacattggaagtcgaaggttct 1219
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 1220 gataacattgaaaatgtcaaagccaaaattcaagacaaagaaggtattccaccagatcaa 1279
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
||| | | || || || ||||||||||||||||||||||||||| | || || || ||
Sbjct: 1280 caaagattaattttcgctggtaaacaattagaagatggtcgtactctctctgactacaat 1339
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||||||||| || ||||| |||||| | |||||||||||||||||
Sbjct: 1340 attcaaaaggaatccactctccatttagttctcagattaagaggtggtat 1389
Score = 194 bits (98), Expect = 9e-50
Identities = 197/230 (85%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
|||||||| || || |||||| | |||||||| || || || |||||||||||||||||
Sbjct: 4297 atgcaaatttttgtcaaaaccctcactggtaagactattacactcgaagttgaaggttct 4356
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| ||||| || || || |||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 4357 gataacattgagaatgttaaagccaaaatccaagacaaagaaggtattccaccagatcaa 4416
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
|||||||| || || |||||||||||||| || |||||||||||| | || ||||| |||
Sbjct: 4417 caacgtctcattttcgccggtaaacaattggaggatggtcgtactctctctgattacaac 4476
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||||||||| || ||||| |||||| | |||||||||||||||||
Sbjct: 4477 attcaaaaggaatccactctccatttagttctcagattaagaggtggtat 4526
Score = 190 bits (96), Expect = 1e-48
Identities = 182/208 (87%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 52 actggtaaaaccatcactctcgaagttgaaggttcagacaacatcgaaaacgtcaaagcc 111
|||||||||||||| || ||||||||||||||| |||||||| || || || ||| |
Sbjct: 5990 actggtaaaaccattacactcgaagttgaaggtagtgacaacattgagaatgtaaaaaca 6049
Query: 112 aagattcaagacaaagaagg-tatcccaccagatca-acaacgtcttatctttgccggta 169
|| ||||||||||||||||| ||||||||||||||| ||||||||| || || |||||||
Sbjct: 6050 aaaattcaagacaaagaagggtatcccaccagatcacacaacgtctcattttcgccggta 6109
Query: 170 aacaattagaagatggtcgtactttatccgattataacatccaaaaggaatcaaccctcc 229
||||||||||||||||||||||| | || ||||| ||||| |||||||||||||| ||||
Sbjct: 6110 aacaattagaagatggtcgtactctttctgattacaacattcaaaaggaatcaacactcc 6169
Query: 230 acttagttttaagattaagaggtggtat 257
| |||||| | |||||||||||||||||
Sbjct: 6170 atttagttctcagattaagaggtggtat 6197
Score = 186 bits (94), Expect = 2e-47
Identities = 196/230 (85%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| |||||||| | ||||||||||| |||||| | ||||||||||||||
Sbjct: 2780 atgcaaatctttgttaaaactctcactggtaaaactatcactttggaagttgaaggttct 2839
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| || || ||||| || || || || || ||||| ||||||||||| ||||||||||||
Sbjct: 2840 gataatattgaaaatgtaaaggctaaaatccaagataaagaaggtattccaccagatcaa 2899
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
||| | | |||||||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 2900 caaagattaatctttgccggtaaacaattagaagatggtcgtactctttctgactacaat 2959
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 2960 attcaaaaagaatccactctccatttagttttaagattaagaggtggtat 3009
Score = 186 bits (94), Expect = 2e-47
Identities = 196/230 (85%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
|||||||| || |||||||| | ||||||||||| ||||| | |||||||||||||||
Sbjct: 4799 atgcaaatttttgttaaaactctcactggtaaaactatcaccttagaagttgaaggttca 4858
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| || || ||||| || ||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 4859 gataatattgaaaatgttaaagccaagattcaagataaagaaggtattcccccagatcaa 4918
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
||| | | || || || ||||||||||||||||||||||||||| | || || |||||
Sbjct: 4919 caaagattaattttcgctggtaaacaattagaagatggtcgtactctttcagactataat 4978
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct: 4979 attcaaaaagaatcaactcttcatttagttttaagattaagaggtggtat 5028
Score = 180 bits (91), Expect = 1e-45
Identities = 197/231 (85%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
|||||||| || || |||||| | |||||||| || || || |||||||||||||||||
Sbjct: 3693 atgcaaatttttgtcaaaaccctcactggtaagactattacactcgaagttgaaggttct 3752
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| ||||| || || || |||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 3753 gataacattgagaatgttaaagccaaaatccaagacaaagaaggtattccaccagatcaa 3812
Query: 148 caacgtctt-atctttgccggtaaacaattagaagatggtcgtactttatccgattataa 206
||||||||| || || |||||||||||||| || |||||||||||| | || ||||| ||
Sbjct: 3813 caacgtcttcattttcgccggtaaacaattggaggatggtcgtactctctctgattacaa 3872
Query: 207 catccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
||| |||| |||||| || ||||| |||||| | |||||||||||||||||
Sbjct: 3873 cattcaaagggaatccactctccatttagttctcagattaagaggtggtat 3923
Score = 172 bits (87), Expect = 3e-43
Identities = 178/207 (85%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 52 actggtaaaaccatcactctcgaagttg-aaggttcagacaacatcgaaaacgtcaaagc 110
|||||||| || || || |||||||||| ||||||| || ||||| || || || |||||
Sbjct: 5761 actggtaagactattacactcgaagttggaaggttctgataacattgagaatgttaaagc 5820
Query: 111 caagattcaagacaaagaaggtatcccaccagatcaacaacgtcttatctttgccggtaa 170
||| || ||||||||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 5821 caaaatccaagacaaagaaggtattccaccagatcaacaacgtctcattttcgccggtaa 5880
Query: 171 acaattagaagatggtcgtactttatccgattataacatccaaaaggaatcaaccctcca 230
|||||| || |||||||||||| | || ||||| ||||| ||||||||||| || |||||
Sbjct: 5881 acaattggaggatggtcgtactctctctgattacaacattcaaaaggaatccactctcca 5940
Query: 231 cttagttttaagattaagaggtggtat 257
|||||| | |||||||||||||||||
Sbjct: 5941 tttagttctcagattaagaggtggtat 5967
Score = 170 bits (86), Expect = 1e-42
Identities = 119/130 (91%)
Strand = Plus / Plus
Query: 128 aaggtatcccaccagatcaacaacgtcttatctttgccggtaaacaattagaagatggtc 187
||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 2652 aaggtattccaccagatcaacaacgtctcatttttgctggtaaacaattagaagatggtc 2711
Query: 188 gtactttatccgattataacatccaaaaggaatcaaccctccacttagttttaagattaa 247
||||| | || || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 2712 gtactctctctgactataacattcaaaaggaatcaactcttcacttagttttaagattaa 2771
Query: 248 gaggtggtat 257
||||||||||
Sbjct: 2772 gaggtggtat 2781
Score = 167 bits (84), Expect = 2e-41
Identities = 197/232 (84%), Gaps = 2/232 (0%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| |||||||| ||||| |||||||| ||| | | ||||| ||||||
Sbjct: 1844 atgcaaatctttgttaaaactttaacaggtaaaactatccccttggaagtcgaaggtagt 1903
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaagg-tatcccaccagatca 146
|| ||||| ||||| || |||||||| || ||||| |||||||| ||| || ||||||||
Sbjct: 1904 gataacattgaaaatgttaaagccaaaatccaagataaagaagggtattcccccagatca 1963
Query: 147 acaacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataa 206
||||||||| || || || ||||||||||| ||||||||||||||| | || || |||||
Sbjct: 1964 acaacgtctcattttcgctggtaaacaattggaagatggtcgtactctctctgactataa 2023
Query: 207 catccaaaaggaatc-aaccctccacttagttttaagattaagaggtggtat 257
||| ||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 2024 cattcaaaaggaatcaaactcttcacttagttttaagattaagaggtggtat 2075
Score = 163 bits (82), Expect = 3e-40
Identities = 193/230 (83%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
|||||||| ||||| ||||| | ||||||||||||||||| | ||||| ||||||
Sbjct: 5027 atgcaaattttcgtcaaaactcttactggtaaaaccatcacattagaagtcgaaggtagt 5086
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
||||| || ||||| || |||||||| |||||||| ||||||||||| || |||||||||
Sbjct: 5087 gacaatattgaaaatgttaaagccaaaattcaagataaagaaggtattcccccagatcaa 5146
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
||| | | || || || ||||||||||||||||||||||||||| | || ||||| |||
Sbjct: 5147 caaagattaattttcgctggtaaacaattagaagatggtcgtactctctctgattacaac 5206
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||||||||| || ||||| |||||| | |||||||||||||||||
Sbjct: 5207 attcaaaaggaatccactctccatttagttctcagattaagaggtggtat 5256
Score = 155 bits (78), Expect = 8e-38
Identities = 192/230 (83%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| || |||||||| |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 1616 atgcaaatctttgtaaaaaccttgactggtaagaccattactcttgaagtcgaaggttct 1675
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| ||||| ||||| ||||||||||| |||||||||||| ||||||| || |||||||||
Sbjct: 1676 gataacattgaaaatgtcaaagccaaaattcaagacaaaaaaggtattcccccagatcaa 1735
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
||| | | || || || |||||||||||| || ||||||||||| | || || || ||
Sbjct: 1736 caaagattaattttcgctggtaaacaattaaaaaatggtcgtactctctctgactacaat 1795
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||||||||| || ||||| ||||| | ||||||| |||||||||
Sbjct: 1796 attcaaaaggaatccactctccatttagtacttagattaaaaggtggtat 1845
Score = 149 bits (75), Expect = 5e-36
Identities = 193/231 (83%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| || ||||| | ||||||||||||||||| | || |||||||||
Sbjct: 226 atgcaaatctttgtaaaaactctcactggtaaaaccatcaccttagaggttgaaggtagt 285
Query: 88 gacaac-atcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatca 146
|| ||| || ||||| || ||||| || |||||||||||||||||||| |||||||||||
Sbjct: 286 gataaccattgaaaatgttaaagctaaaattcaagacaaagaaggtattccaccagatca 345
Query: 147 acaacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataa 206
|||| | | || || || ||||||||||||||||||||||||||| | || || || ||
Sbjct: 346 acaaagattaattttcgctggtaaacaattagaagatggtcgtactctctctgactacaa 405
Query: 207 catccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
||| ||||||||||| || |||||||| ||| | |||||||||||||||||
Sbjct: 406 cattcaaaaggaatccactctccacttggttctcagattaagaggtggtat 456
Score = 147 bits (74), Expect = 2e-35
Identities = 128/146 (87%)
Strand = Plus / Plus
Query: 106 aaagccaagattcaagacaaagaaggtatcccaccagatcaacaacgtcttatctttgcc 165
|||||||| || ||||||||||||||||| |||||||||||||||||||| || || ||
Sbjct: 1009 aaagccaaaatccaagacaaagaaggtattccaccagatcaacaacgtctcattttcgct 1068
Query: 166 ggtaaacaattagaagatggtcgtactttatccgattataacatccaaaaggaatcaacc 225
|||||||||||||||||||| |||||| | || ||||| ||||||||||| ||||| ||
Sbjct: 1069 ggtaaacaattagaagatggccgtactctctctgattacaacatccaaaaagaatccact 1128
Query: 226 ctccacttagttttaagattaagagg 251
||||| |||||| | |||||||||||
Sbjct: 1129 ctccatttagttctcagattaagagg 1154
Score = 145 bits (73), Expect = 7e-35
Identities = 204/239 (85%), Gaps = 9/239 (3%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
|||||||| || |||||||| | |||||||| ||||||||| | ||||||||||||||
Sbjct: 2307 atgcaaatttttgttaaaactctcactggtaagaccatcactttagaagttgaaggttct 2366
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaa--ggtatccca-ccagat 144
|| ||||| ||||| || ||||||||||| ||||| |||||| ||| ||||| ||||||
Sbjct: 2367 gataacattgaaaatgttaaagccaagatccaagataaagaaggggtttcccacccagat 2426
Query: 145 caacaacg-tcttatctttgccggtaaacaattagaagatggtcgtactttatcc-gatt 202
|||||||| | |||| || || ||||||||||||||||||||||||||| | ||| || |
Sbjct: 2427 caacaacgtttttattttcgctggtaaacaattagaagatggtcgtactctttccggact 2486
Query: 203 ataacatccaaaa--ggaatcaacc-ct-ccacttagttttaagattaagaggtggtat 257
||||||| ||||| |||||| || || ||||||||||||||||||||||||||||||
Sbjct: 2487 ataacattcaaaaagggaatccccctctcccacttagttttaagattaagaggtggtat 2545
Score = 133 bits (67), Expect = 3e-31
Identities = 190/227 (83%), Gaps = 3/227 (1%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
|||||||| || |||||||| | |||||||| |||||||| | || |||||||||
Sbjct: 691 atgcaaatttttgttaaaactctcactggtaagaccatcaccttagaggttgaaggtagt 750
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaa-ggtatcccaccagatca 146
|| ||||| ||||| ||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 751 gataacattgaaaatgtcaaagccaaaatccaagacaaagaagggtatcccaccagatca 810
Query: 147 acaacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataa 206
|||| | | || || || ||||||||||||||||||||||||||| | || || || ||
Sbjct: 811 acaaagattaattttcgctggtaaacaattagaagatggtcgtactctctctgactacaa 870
Query: 207 catcc-aaaaggaatcaaccct-ccacttagttttaagattaagagg 251
||||| |||| ||||| || || ||| ||||||||||||||||||||
Sbjct: 871 catccaaaaaagaatccactctcccatttagttttaagattaagagg 917
Score = 131 bits (66), Expect = 1e-30
Identities = 166/198 (83%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 61 accatcactctcgaagttgaaggttcagacaacatcgaaaacgtcaaagccaagattcaa 120
||||||||||| |||||||||||||| || || || ||||| || || || || || |||
Sbjct: 2111 accatcactcttgaagttgaaggttctgataatattgaaaatgtaaaggctaaaatccaa 2170
Query: 121 gacaaagaaggtatcccaccagatcaacaacgtcttatcttt-gccggtaaacaattaga 179
|| ||||||||||| ||||||||||||||| | | || || || ||||||||||||||
Sbjct: 2171 gataaagaaggtattccaccagatcaacaaagattaattttccgctggtaaacaattaga 2230
Query: 180 agatggtcgtactttatccgattataacatccaaaaggaatcaaccctccacttagtttt 239
||||||||||||| | || || || || || ||||| ||||| || ||||| ||||||||
Sbjct: 2231 agatggtcgtactctttctgactacaatattcaaaaagaatccactctccatttagtttt 2290
Query: 240 aagattaagaggtggtat 257
||||||||||||||||||
Sbjct: 2291 aagattaagaggtggtat 2308
Score = 131 bits (66), Expect = 1e-30
Identities = 197/233 (84%), Gaps = 7/233 (3%)
Strand = Plus / Plus
Query: 32 aaatcttcgttaaaaccttaactggtaaaacc-atcactctcgaagttgaaggttcagac 90
||||||| || |||||||| |||||||||||| ||||| | ||||| |||||||| |||
Sbjct: 460 aaatctttgtaaaaaccttgactggtaaaacctatcaccttggaagtcgaaggttctgac 519
Query: 91 aacatcg-aaaacgtcaaagccaagattc-aagacaaagaagg-tatcccaccagatcaa 147
||||| | |||| || |||||||| || | ||||||||||||| | ||||||||||||||
Sbjct: 520 aacattggaaaatgttaaagccaaaatcccaagacaaagaagggtttcccaccagatcaa 579
Query: 148 caacgtcttatcttt--gccggtaaacaattagaagatggtcgtactttatccgattata 205
||| | ||| ||| || ||||||||||||||||||||||||||| | || || || |
Sbjct: 580 caaagaattaattttccgctggtaaacaattagaagatggtcgtactctctctgactaca 639
Query: 206 acatccaaaa-ggaatcaaccctccacttagttttaagattaagaggtggtat 257
|||| ||||| |||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 640 acattcaaaaaggaatccactctccatttagttttaagattaagaggtggtat 692
Score = 95.6 bits (48), Expect = 6e-20
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 166 ggtaaacaattagaagatggtcgtactttatccgattataacatccaaaaggaatcaacc 225
||||||||||||||||||||||||||| | || ||||| ||||| ||||||||||| ||
Sbjct: 4207 ggtaaacaattagaagatggtcgtactctctctgattacaacattcaaaaggaatccact 4266
Query: 226 ctccacttagttttaagattaagaggtggtat 257
||||| ||||| | |||||||||||||||||
Sbjct: 4267 ctccatttagtcctcagattaagaggtggtat 4298
Score = 83.8 bits (42), Expect = 2e-16
Identities = 127/150 (84%), Gaps = 4/150 (2%)
Strand = Plus / Plus
Query: 112 aagattcaagacaaagaagg-tatccca-ccag-atcaacaacgtcttatctttgccggt 168
|||||||||||||||||||| ||||||| |||| | |||||| | | || || || |||
Sbjct: 5587 aagattcaagacaaagaagggtatcccaaccaggaccaacaaagattaattttcgctggt 5646
Query: 169 aaacaattagaa-gatggtcgtactttatccgattataacatccaaaaggaatcaaccct 227
|||||||||||| |||||||||||| | || ||||| ||||| ||||||||||| || ||
Sbjct: 5647 aaacaattagaaagatggtcgtactctctctgattacaacattcaaaaggaatccactct 5706
Query: 228 ccacttagttttaagattaagaggtggtat 257
||| ||||| | |||||||||||||||||
Sbjct: 5707 ccatttagtcctcagattaagaggtggtat 5736
Score = 69.9 bits (35), Expect = 4e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 52 actggtaaaaccatcactctcgaagttgaaggttcagacaacatcgaaaacgtcaaagcc 111
|||||||||||||| || ||||||||||||||| |||||||| || || || ||| |
Sbjct: 4549 actggtaaaaccattacactcgaagttgaaggtagtgacaacattgagaatgtaaaaaca 4608
Query: 112 aagattcaagacaaagaaggtat 134
|| ||||||||||||||||||||
Sbjct: 4609 aaaattcaagacaaagaaggtat 4631
Score = 65.9 bits (33), Expect = 6e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttga 80
||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 6196 atgcaaatctttgtcaaaacattaactggtaagaccatcactcttgaagttga 6248
Score = 46.1 bits (23), Expect = 5e-05
Identities = 141/171 (82%), Gaps = 7/171 (4%)
Strand = Plus / Plus
Query: 52 actggtaaaaccatcac-tctcgaagttgaaggttcagacaacatcgaaaacgtcaaagc 110
||||||||||| ||||| | | |||||||||||| | |||||| ||||| || ||| |
Sbjct: 5279 actggtaaaactatcacatttggaagttgaaggtagtgccaacattgaaaatgtaaaaac 5338
Query: 111 caa-gattcaagac-aaagaaggtat-cccaccagatcaacaacgtctt-atctttgc-c 165
||| ||||||||| ||||||||||| ||| ||||||||||||||| || || || ||
Sbjct: 5339 caaagattcaagaataaagaaggtattccccccagatcaacaacgttttcattttcgctg 5398
Query: 166 ggtaaacaattagaa-gatggtcgtactttatccgattataacatccaaaa 215
||||||||||||||| |||||||| ||| | || ||||| || ||||||||
Sbjct: 5399 ggtaaacaattagaaggatggtcggactctctctgattacaatatccaaaa 5449
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaacca 64
||||||||||| || ||||| ||||||||||| ||||
Sbjct: 4151 atgcaaatctttgtcaaaacattaactggtaagacca 4187
Score = 34.2 bits (17), Expect = 0.19
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 51 aactggtaaaaccatcactct 71
||||||||| |||||||||||
Sbjct: 5521 aactggtaagaccatcactct 5541
>Contig-U16561-1 (Contig-U16561-1Q) /CSM_Contig/Contig-U16561-1Q.Seq.d
Length = 2118
Score = 196 bits (99), Expect = 2e-50
Identities = 199/231 (86%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| || ||||| ||||||||||| ||||||||||| |||||||| || |||
Sbjct: 1555 atgcaaatctttgtcaaaacattaactggtaagaccatcactcttgaagttgagggctca 1614
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaagg-tatcccaccagatca 146
|| || || ||||| || ||| | |||||||||||||||||||| |||||||||||| ||
Sbjct: 1615 gataatattgaaaatgttaaaacaaagattcaagacaaagaagggtatcccaccagacca 1674
Query: 147 acaacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataa 206
|||| | | || || || ||||||||||||||||||||||||||| | || ||||| ||
Sbjct: 1675 acaaagattaattttcgctggtaaacaattagaagatggtcgtactctctctgattacaa 1734
Query: 207 catccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
||| |||||||||||||| ||||| |||||| | |||||||||||||||||
Sbjct: 1735 cattcaaaaggaatcaacactccatttagttctcagattaagaggtggtat 1785
Score = 190 bits (96), Expect = 1e-48
Identities = 182/208 (87%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 52 actggtaaaaccatcactctcgaagttgaaggttcagacaacatcgaaaacgtcaaagcc 111
|||||||||||||| || ||||||||||||||| |||||||| || || || ||| |
Sbjct: 1349 actggtaaaaccattacactcgaagttgaaggtagtgacaacattgagaatgtaaaaaca 1408
Query: 112 aagattcaagacaaagaagg-tatcccaccagatca-acaacgtcttatctttgccggta 169
|| ||||||||||||||||| ||||||||||||||| ||||||||| || || |||||||
Sbjct: 1409 aaaattcaagacaaagaagggtatcccaccagatcacacaacgtctcattttcgccggta 1468
Query: 170 aacaattagaagatggtcgtactttatccgattataacatccaaaaggaatcaaccctcc 229
||||||||||||||||||||||| | || ||||| ||||| |||||||||||||| ||||
Sbjct: 1469 aacaattagaagatggtcgtactctttctgattacaacattcaaaaggaatcaacactcc 1528
Query: 230 acttagttttaagattaagaggtggtat 257
| |||||| | |||||||||||||||||
Sbjct: 1529 atttagttctcagattaagaggtggtat 1556
Score = 186 bits (94), Expect = 2e-47
Identities = 196/230 (85%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
|||||||| || |||||||| | ||||||||||| ||||| | |||||||||||||||
Sbjct: 158 atgcaaatttttgttaaaactctcactggtaaaactatcaccttagaagttgaaggttca 217
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| || || ||||| || ||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 218 gataatattgaaaatgttaaagccaagattcaagataaagaaggtattcccccagatcaa 277
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
||| | | || || || ||||||||||||||||||||||||||| | || || |||||
Sbjct: 278 caaagattaattttcgctggtaaacaattagaagatggtcgtactctttcagactataat 337
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct: 338 attcaaaaagaatcaactcttcatttagttttaagattaagaggtggtat 387
Score = 182 bits (92), Expect = 3e-46
Identities = 191/224 (85%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
|||||||| || || |||||| | ||||||||||||||||| | ||||| ||||||
Sbjct: 1784 atgcaaatttttgtcaaaaccctcactggtaaaaccatcaccttggaagtcgaaggtagt 1843
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
|| ||||| ||||| ||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 1844 gataacattgaaaatgtcaaagccaaaatccaagacaaagaaggtattccaccagatcaa 1903
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
|||||||| || || |||||||||||||| || |||||||||||| | || ||||| |||
Sbjct: 1904 caacgtctcattttcgccggtaaacaattggaggatggtcgtactctctctgattacaac 1963
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagagg 251
|| ||||||||||| || ||||| |||||| | |||||||||||
Sbjct: 1964 attcaaaaggaatccactctccatttagttctcagattaagagg 2007
Score = 172 bits (87), Expect = 3e-43
Identities = 178/207 (85%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 52 actggtaaaaccatcactctcgaagttg-aaggttcagacaacatcgaaaacgtcaaagc 110
|||||||| || || || |||||||||| ||||||| || ||||| || || || |||||
Sbjct: 1120 actggtaagactattacactcgaagttggaaggttctgataacattgagaatgttaaagc 1179
Query: 111 caagattcaagacaaagaaggtatcccaccagatcaacaacgtcttatctttgccggtaa 170
||| || ||||||||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 1180 caaaatccaagacaaagaaggtattccaccagatcaacaacgtctcattttcgccggtaa 1239
Query: 171 acaattagaagatggtcgtactttatccgattataacatccaaaaggaatcaaccctcca 230
|||||| || |||||||||||| | || ||||| ||||| ||||||||||| || |||||
Sbjct: 1240 acaattggaggatggtcgtactctctctgattacaacattcaaaaggaatccactctcca 1299
Query: 231 cttagttttaagattaagaggtggtat 257
|||||| | |||||||||||||||||
Sbjct: 1300 tttagttctcagattaagaggtggtat 1326
Score = 163 bits (82), Expect = 3e-40
Identities = 193/230 (83%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
|||||||| ||||| ||||| | ||||||||||||||||| | ||||| ||||||
Sbjct: 386 atgcaaattttcgtcaaaactcttactggtaaaaccatcacattagaagtcgaaggtagt 445
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggtatcccaccagatcaa 147
||||| || ||||| || |||||||| |||||||| ||||||||||| || |||||||||
Sbjct: 446 gacaatattgaaaatgttaaagccaaaattcaagataaagaaggtattcccccagatcaa 505
Query: 148 caacgtcttatctttgccggtaaacaattagaagatggtcgtactttatccgattataac 207
||| | | || || || ||||||||||||||||||||||||||| | || ||||| |||
Sbjct: 506 caaagattaattttcgctggtaaacaattagaagatggtcgtactctctctgattacaac 565
Query: 208 atccaaaaggaatcaaccctccacttagttttaagattaagaggtggtat 257
|| ||||||||||| || ||||| |||||| | |||||||||||||||||
Sbjct: 566 attcaaaaggaatccactctccatttagttctcagattaagaggtggtat 615
Score = 83.8 bits (42), Expect = 2e-16
Identities = 127/150 (84%), Gaps = 4/150 (2%)
Strand = Plus / Plus
Query: 112 aagattcaagacaaagaagg-tatccca-ccag-atcaacaacgtcttatctttgccggt 168
|||||||||||||||||||| ||||||| |||| | |||||| | | || || || |||
Sbjct: 946 aagattcaagacaaagaagggtatcccaaccaggaccaacaaagattaattttcgctggt 1005
Query: 169 aaacaattagaa-gatggtcgtactttatccgattataacatccaaaaggaatcaaccct 227
|||||||||||| |||||||||||| | || ||||| ||||| ||||||||||| || ||
Sbjct: 1006 aaacaattagaaagatggtcgtactctctctgattacaacattcaaaaggaatccactct 1065
Query: 228 ccacttagttttaagattaagaggtggtat 257
||| ||||| | |||||||||||||||||
Sbjct: 1066 ccatttagtcctcagattaagaggtggtat 1095
Score = 75.8 bits (38), Expect = 6e-14
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 28 atgcaaatcttcgttaaaaccttaactggtaaaaccatcactctcgaagttgaaggttca 87
||||||||||| || ||||| | |||||||||||||| || |||||||||||||||
Sbjct: 2013 atgcaaatctttgtaaaaactctcactggtaaaaccattacactcgaagttgaaggtagt 2072
Query: 88 gacaacatcgaaaacgtcaaagccaagattcaagacaaagaaggta 133
|||||||| || || || ||| | || |||||||||||||||||||
Sbjct: 2073 gacaacattgagaatgtaaaaacaaaaattcaagacaaagaaggta 2118
Score = 46.1 bits (23), Expect = 5e-05
Identities = 141/171 (82%), Gaps = 7/171 (4%)
Strand = Plus / Plus
Query: 52 actggtaaaaccatcac-tctcgaagttgaaggttcagacaacatcgaaaacgtcaaagc 110
||||||||||| ||||| | | |||||||||||| | |||||| ||||| || ||| |
Sbjct: 638 actggtaaaactatcacatttggaagttgaaggtagtgccaacattgaaaatgtaaaaac 697
Query: 111 caa-gattcaagac-aaagaaggtat-cccaccagatcaacaacgtctt-atctttgc-c 165
||| ||||||||| ||||||||||| ||| ||||||||||||||| || || || ||
Sbjct: 698 caaagattcaagaataaagaaggtattccccccagatcaacaacgttttcattttcgctg 757
Query: 166 ggtaaacaattagaa-gatggtcgtactttatccgattataacatccaaaa 215
||||||||||||||| |||||||| ||| | || ||||| || ||||||||
Sbjct: 758 ggtaaacaattagaaggatggtcggactctctctgattacaatatccaaaa 808
Score = 34.2 bits (17), Expect = 0.19
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 51 aactggtaaaaccatcactct 71
||||||||| |||||||||||
Sbjct: 880 aactggtaagaccatcactct 900
Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,185
Number of Sequences: 8402
Number of extensions: 18185
Number of successful extensions: 2713
Number of sequences better than 10.0: 649
length of query: 497
length of database: 8,075,542
effective HSP length: 16
effective length of query: 481
effective length of database: 7,941,110
effective search space: 3819673910
effective search space used: 3819673910
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
|
| dna update |
2009. 1.15 |
| Homology vs DNA |
Query= Contig-U15190-1 (Contig-U15190-1Q) /CSM_Contig/Contig-U15190-1Q.Seq.d
(497 letters)
Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(X07210) Dictyostelium discoideum mRNA for ubiquitin. 807 0.0 1
(AU264296) Dictyostelium discoideum vegetative cDNA clone:VS... 807 0.0 1
(BJ445150) Dictyostelium discoideum cDNA clone:ddv58h16, 3' ... 807 0.0 1
(BJ441950) Dictyostelium discoideum cDNA clone:ddv48h12, 3' ... 805 0.0 1
(BJ426323) Dictyostelium discoideum cDNA clone:ddv58h16, 5' ... 801 0.0 1
(AU267516) Dictyostelium discoideum vegetative cDNA clone:VS... 797 0.0 1
(AU265882) Dictyostelium discoideum vegetative cDNA clone:VS... 795 0.0 1
(AU268781) Dictyostelium discoideum vegetative cDNA clone:VS... 793 0.0 1
(AU268780) Dictyostelium discoideum vegetative cDNA clone:VS... 793 0.0 1
(AU284675) Dictyostelium discoideum gamete cDNA clone:FC-BG2... 777 0.0 1
(M23749) D.discoideum ubiquitin mRNA, complete cds, clone DC... 775 0.0 1
(AU266663) Dictyostelium discoideum vegetative cDNA clone:VS... 771 0.0 1
(AU261417) Dictyostelium discoideum vegetative cDNA clone:VS... 769 0.0 1
(AU268172) Dictyostelium discoideum vegetative cDNA clone:VS... 767 0.0 1
(AU265959) Dictyostelium discoideum vegetative cDNA clone:VS... 767 0.0 1
(AU261474) Dictyostelium discoideum vegetative cDNA clone:VS... 767 0.0 1
(AU267515) Dictyostelium discoideum vegetative cDNA clone:VS... 753 0.0 2
(AU267916) Dictyostelium discoideum vegetative cDNA clone:VS... 763 0.0 1
(AU264984) Dictyostelium discoideum vegetative cDNA clone:VS... 761 0.0 1
(AU261757) Dictyostelium discoideum vegetative cDNA clone:VS... 761 0.0 1
(AU261603) Dictyostelium discoideum vegetative cDNA clone:VS... 761 0.0 1
(AU261335) Dictyostelium discoideum vegetative cDNA clone:VS... 755 0.0 1
(AU264983) Dictyostelium discoideum vegetative cDNA clone:VS... 753 0.0 1
(AU265958) Dictyostelium discoideum vegetative cDNA clone:VS... 656 0.0 2
(AU267658) Dictyostelium discoideum vegetative cDNA clone:VS... 747 0.0 1
(AU264412) Dictyostelium discoideum vegetative cDNA clone:VS... 737 0.0 1
(AU268540) Dictyostelium discoideum vegetative cDNA clone:VS... 731 0.0 1
(AU268539) Dictyostelium discoideum vegetative cDNA clone:VS... 731 0.0 1
(AU268812) Dictyostelium discoideum vegetative cDNA clone:VS... 624 0.0 3
(AU265881) Dictyostelium discoideum vegetative cDNA clone:VS... 700 0.0 1
(AU261915) Dictyostelium discoideum vegetative cDNA clone:VS... 678 0.0 1
(X04702) Dictyostelium discoideum mRNA for ubiquitin precursor. 599 0.0 2
(AU268173) Dictyostelium discoideum vegetative cDNA clone:VS... 666 0.0 1
(AU269271) Dictyostelium discoideum vegetative cDNA clone:VS... 389 e-165 7
(C93217) Dictyostelium discoideum slug cDNA, clone SSM837. 585 e-163 1
(AU267044) Dictyostelium discoideum vegetative cDNA clone:VS... 537 e-148 1
(AU267043) Dictyostelium discoideum vegetative cDNA clone:VS... 537 e-148 1
(AU262971) Dictyostelium discoideum vegetative cDNA clone:VS... 500 e-137 1
(AU265799) Dictyostelium discoideum vegetative cDNA clone:VS... 434 e-117 1
(AU262518) Dictyostelium discoideum vegetative cDNA clone:VS... 398 e-107 1
(AU267657) Dictyostelium discoideum vegetative cDNA clone:VS... 365 1e-96 1
(EC760953) PSE00003363 rw_mgpallid Polysphondylium pallidum ... 198 2e-81 2
(AU264295) Dictyostelium discoideum vegetative cDNA clone:VS... 313 4e-81 1
(AU262576) Dictyostelium discoideum vegetative cDNA clone:VS... 313 4e-81 1
(EC760763) PSE00005576 rw_mgpallid Polysphondylium pallidum ... 196 7e-81 2
(EC760733) PSE00003106 rw_mgpallid Polysphondylium pallidum ... 184 3e-77 2
(M23754) D.discoideum ubiquitin mRNA, complete cds, clone DC... 258 2e-64 1
(M19492) Slime mold (D.discoideum) ubiquitin lambda-229 gene... 258 2e-64 1
(AU284305) Dictyostelium discoideum gamete cDNA clone:FC-AJ2... 258 2e-64 1
(BJ409856) Dictyostelium discoideum cDNA clone:ddv10d10, 5' ... 258 2e-64 1
(AU284306) Dictyostelium discoideum gamete cDNA clone:FC-AJ2... 246 7e-61 1
(AU051968) Dictyostelium discoideum slug cDNA, clone SSC252. 246 7e-61 1
(AU039685) Dictyostelium discoideum slug cDNA, clone SLG180. 246 7e-61 1
(AU038991) Dictyostelium discoideum slug cDNA, clone SSM248. 246 7e-61 1
(AU038463) Dictyostelium discoideum slug cDNA, clone SSH752. 246 7e-61 1
(AU033843) Dictyostelium discoideum slug cDNA, clone SLB512. 246 7e-61 1
(AU033489) Dictyostelium discoideum slug cDNA, clone SLA888. 246 7e-61 1
(C92967) Dictyostelium discoideum slug cDNA, clone SSF284. 246 7e-61 1
(C92941) Dictyostelium discoideum slug cDNA, clone SSF249. 246 7e-61 1
(C92420) Dictyostelium discoideum slug cDNA, clone SSE525. 246 7e-61 1
(C91900) Dictyostelium discoideum slug cDNA, clone SSC150. 246 7e-61 1
(C90308) Dictyostelium discoideum slug cDNA, clone SSI785. 246 7e-61 1
(C89997) Dictyostelium discoideum slug cDNA, clone SSG823. 246 7e-61 1
(BJ398488) Dictyostelium discoideum cDNA clone:dds12k14, 3' ... 246 7e-61 1
(C90024) Dictyostelium discoideum slug cDNA, clone SSG108. 238 2e-58 1
(C90381) Dictyostelium discoideum slug cDNA, clone SSI334. 234 3e-57 1
(BJ434406) Dictyostelium discoideum cDNA clone:ddv16c24, 3' ... 234 3e-57 1
(BJ430437) Dictyostelium discoideum cDNA clone:ddv7c10, 3' e... 234 3e-57 1
(BJ401161) Dictyostelium discoideum cDNA clone:dds22h09, 3' ... 234 3e-57 1
(BJ400323) Dictyostelium discoideum cDNA clone:dds9b21, 3' e... 234 3e-57 1
(BJ399915) Dictyostelium discoideum cDNA clone:dds8d04, 3' e... 234 3e-57 1
(BJ398329) Dictyostelium discoideum cDNA clone:dds12d03, 3' ... 234 3e-57 1
(BJ372090) Dictyostelium discoideum cDNA clone:ddc11a10, 3' ... 234 3e-57 1
(BJ342594) Dictyostelium discoideum cDNA clone:dda14b22, 3' ... 234 3e-57 1
(BJ341687) Dictyostelium discoideum cDNA clone:dda7p16, 3' e... 234 3e-57 1
(BJ341667) Dictyostelium discoideum cDNA clone:dda7l15, 3' e... 234 3e-57 1
(EC761306) PSE00003176 rw_mgpallid Polysphondylium pallidum ... 141 3e-57 2
(EC761277) PSE00004971 rw_mgpallid Polysphondylium pallidum ... 141 3e-57 2
(AU284307) Dictyostelium discoideum gamete cDNA clone:FC-AJ2... 230 4e-56 1
(AU267123) Dictyostelium discoideum vegetative cDNA clone:VS... 230 4e-56 1
(AU267122) Dictyostelium discoideum vegetative cDNA clone:VS... 230 4e-56 1
(AU266805) Dictyostelium discoideum vegetative cDNA clone:VS... 230 4e-56 1
(AU266692) Dictyostelium discoideum vegetative cDNA clone:VS... 230 4e-56 1
(AU264022) Dictyostelium discoideum vegetative cDNA clone:VS... 230 4e-56 1
(AU072619) Dictyostelium discoideum slug cDNA, clone SSA408. 230 4e-56 1
(AU053663) Dictyostelium discoideum slug cDNA, clone SLJ351. 230 4e-56 1
(C91057) Dictyostelium discoideum slug cDNA, clone SSJ430. 230 4e-56 1
(C89633) Dictyostelium discoideum slug cDNA, clone SSA408. 230 4e-56 1
(BJ442326) Dictyostelium discoideum cDNA clone:ddv49d16, 3' ... 230 4e-56 1
(BJ440422) Dictyostelium discoideum cDNA clone:ddv43k17, 3' ... 230 4e-56 1
(BJ439207) Dictyostelium discoideum cDNA clone:ddv39b21, 3' ... 230 4e-56 1
(BJ438761) Dictyostelium discoideum cDNA clone:ddv38k12, 3' ... 230 4e-56 1
(BJ433479) Dictyostelium discoideum cDNA clone:ddv22c06, 3' ... 230 4e-56 1
(BJ423533) Dictyostelium discoideum cDNA clone:ddv49d16, 5' ... 230 4e-56 1
(BJ420954) Dictyostelium discoideum cDNA clone:ddv41a08, 5' ... 230 4e-56 1
(BJ420150) Dictyostelium discoideum cDNA clone:ddv38k12, 5' ... 230 4e-56 1
(BJ418507) Dictyostelium discoideum cDNA clone:ddv33a05, 5' ... 230 4e-56 1
(BJ415265) Dictyostelium discoideum cDNA clone:ddv22c06, 5' ... 230 4e-56 1
(EC761860) PSE00005350 rw_mgpallid Polysphondylium pallidum ... 141 5e-56 2
(C90203) Dictyostelium discoideum slug cDNA, clone SSI244. 228 2e-55 1
>(X07210) Dictyostelium discoideum mRNA for ubiquitin.
Length = 505
Score = 807 bits (407), Expect = 0.0
Identities = 407/407 (100%)
Strand = Plus / Plus
Query: 1 gttaacctccttagaaaacagatcaagatgcaaatcttcgttaaaaccttaactggtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gttaacctccttagaaaacagatcaagatgcaaatcttcgttaaaaccttaactggtaaa 69
Query: 61 accatcactctcgaagttgaaggttcagacaacatcgaaaacgtcaaagccaagattcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 accatcactctcgaagttgaaggttcagacaacatcgaaaacgtcaaagccaagattcaa 129
Query: 121 gacaaagaaggtatcccaccagatcaacaacgtcttatctttgccggtaaacaattagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gacaaagaaggtatcccaccagatcaacaacgtcttatctttgccggtaaacaattagaa 189
Query: 181 gatggtcgtactttatccgattataacatccaaaaggaatcaaccctccacttagtttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gatggtcgtactttatccgattataacatccaaaaggaatcaaccctccacttagtttta 249
Query: 241 agattaagaggtggtattgaaccatccctcgtcattcttgcccgtaaatacaaatgtgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agattaagaggtggtattgaaccatccctcgtcattcttgcccgtaaatacaaatgtgac 309
Query: 301 aaaatgatttgcagaaaatgttatgctcgtttacacccacgtgctgttaactgtcgtaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaaatgatttgcagaaaatgttatgctcgtttacacccacgtgctgttaactgtcgtaag 369
Query: 361 aagaaatgtggtcactctaacaatttaagaccaaagaagaagttact 407
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aagaaatgtggtcactctaacaatttaagaccaaagaagaagttact 416
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 420,345,237
Number of extensions: 22101806
Number of successful extensions: 1831288
Number of sequences better than 10.0: 90764
Length of query: 497
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 474
Effective length of database: 100,802,567,956
Effective search space: 47780417211144
Effective search space used: 47780417211144
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 7.15 |
| Homology vs Protein |
Query= Contig-U15190-1 (Contig-U15190-1Q) /CSM_Contig/Contig-U15190-1Q.Seq.d
(497 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M23749_1(M23749|pid:none) D.discoideum ubiquitin mRNA, complete ... 250 1e-65
JC5226(JC5226) ubiquitin / ribosomal protein CEP52 - Acropora mi... 232 4e-60
AF348700_1(AF348700|pid:none) Homo sapiens ubiquitin A-52 residu... 231 7e-60
AE014134_744(AE014134|pid:none) Drosophila melanogaster chromoso... 231 7e-60
AM259605_1(AM259605|pid:none) Salmo salar partial mRNA for ubiqu... 231 9e-60
AF395864_1(AF395864|pid:none) Branchiostoma belcheri ubiquitin m... 230 2e-59
AB036060_1(AB036060|pid:none) Oncorhynchus mykiss mRNA for ubiqu... 230 2e-59
AB032025_1(AB032025|pid:none) Canis lupus familiaris mRNA for ub... 230 2e-59
AK340297_1(AK340297|pid:none) Acyrthosiphon pisum ACYPI000076 mR... 230 2e-59
AM049143_1(AM049143|pid:none) Dascillus cervinus mRNA for riboso... 229 3e-59
AY961507_1(AY961507|pid:none) Lysiphlebus testaceipes ribosomal ... 229 3e-59
AF400203_1(AF400203|pid:none) Spodoptera frugiperda ribosomal pr... 229 3e-59
EF070483_1(EF070483|pid:none) Maconellicoccus hirsutus clone WHM... 228 5e-59
EU139240_1(EU139240|pid:none) Flustra foliacea ubiquinated putat... 228 6e-59
EF070591_1(EF070591|pid:none) Maconellicoccus hirsutus clone WHM... 228 6e-59
BT043771_1(BT043771|pid:none) Salmo salar clone HM6_1209 ubiquit... 228 6e-59
BT048991_1(BT048991|pid:none) Salmo salar clone ssal-evf-534-259... 228 8e-59
AJ388512_1(AJ388512|pid:none) Canis familiaris mRNA for ubiquiti... 228 8e-59
AB021972_1(AB021972|pid:none) Bombyx mori UBI1 mRNA for ubiquiti... 227 1e-58
DQ286557_1(DQ286557|pid:none) Helicoverpa assulta ubiquitin-53aa... 227 1e-58
AY771321_1(AY771321|pid:none) Scleronephthya gracillimum ubuiqui... 227 1e-58
DQ508963_1(DQ508963|pid:none) Pectinaria gouldii ubiquitin mRNA,... 226 2e-58
BT073770_1(BT073770|pid:none) Oncorhynchus mykiss clone omyk-evo... 226 2e-58
AM441378_1(AM441378|pid:none) Vitis vinifera contig VV78X123789.... 226 2e-58
EU302560_1(EU302560|pid:none) Lineus viridis ribosomal protein r... 226 3e-58
AB047855_1(AB047855|pid:none) Oryza sativa Ub-CEP52-1 gene for u... 225 4e-58
DQ673413_1(DQ673413|pid:none) Diaphorina citri putative ubiquiti... 225 4e-58
BT073122_1(BT073122|pid:none) Oncorhynchus mykiss clone omyk-evn... 225 5e-58
BT073019_1(BT073019|pid:none) Oncorhynchus mykiss clone omyk-evn... 225 5e-58
EF145408_1(EF145408|pid:none) Populus trichocarpa clone WS01124_... 225 5e-58
FJ527489_1(FJ527489|pid:none) Plutella xylostella isolate Ub1 ub... 224 7e-58
AB045755_1(AB045755|pid:none) Physarum polycephalum ppub1 mRNA f... 224 7e-58
BT051346_1(BT051346|pid:none) Medicago truncatula clone MTYF1_F2... 224 9e-58
L21898_1(L21898|pid:none) Brassica rapa ubiquitin/ribosomal prot... 223 1e-57
EU125031_1(EU125031|pid:none) Eurythoe complanata ribosomal prot... 223 2e-57
BT061197_1(BT061197|pid:none) Zea mays full-length cDNA clone ZM... 223 2e-57
AY857455_1(AY857455|pid:none) Suberites domuncula L40-ubiquitin ... 223 2e-57
AY314947_1(AY314947|pid:none) Herdmania curvata clone 4284 ribos... 222 3e-57
BT078470_1(BT078470|pid:none) Lepeophtheirus salmonis Pacific fo... 221 6e-57
BT076736_1(BT076736|pid:none) Caligus rogercresseyi clone crog-e... 220 2e-56
UQKM(S06598;S19543;S21687) ubiquitin / ribosomal protein CEP52 -... 219 2e-56
AF064593_1(AF064593|pid:none) Schistosoma japonicum ubiquitin/ri... 217 1e-55
A29456(A29456;B29456;S48386;S38172) ubiquitin / ribosomal protei... 217 1e-55
EU677732_1(EU677732|pid:none) Caenorhabditis brenneri clone 13D4... 217 1e-55
L31492_1(L31492|pid:none) Caenorhabditis elegans ubiquitin/ribos... 217 1e-55
AE016819_518(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 217 1e-55
AF056623_1(AF056623|pid:none) Magnaporthe grisea strain Guy-11 u... 216 2e-55
BT046483_1(BT046483|pid:none) Salmo salar clone ssal-evd-569-157... 216 2e-55
AM269955_93(AM269955|pid:none) Aspergillus niger contig An01c008... 216 3e-55
AF481059_1(AF481059|pid:none) Aplysia californica ubiquitin/ribo... 216 3e-55
FN322451_1(FN322451|pid:none) Schistosoma japonicum isolate Anhu... 215 4e-55
EF145452_1(EF145452|pid:none) Populus trichocarpa clone WS01124_... 215 5e-55
AE017341_332(AE017341|pid:none) Cryptococcus neoformans var. neo... 215 5e-55
CU928179_267(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 214 9e-55
AP007155_821(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 212 4e-54
S18535(S18535) ubiquitin / ribosomal protein CEP52 - Tetrahymena... 211 8e-54
DQ019224_1(DQ019224|pid:none) Gracilaria lemaneiformis ubiquitin... 211 8e-54
AF285859_1(AF285859|pid:none) Wuchereria bancrofti ubiquitin-lik... 207 8e-53
AY251803_1(AY251803|pid:none) Bigelowiella natans ubiquitin/ribo... 204 7e-52
DQ660326_1(DQ660326|pid:none) Oryzias javanicus ubiquitin mRNA, ... 203 2e-51
CP000588_161(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 203 2e-51
AM502227_95(AM502227|pid:none) Leishmania infantum chromosome 9. 202 3e-51
AM910993_48(AM910993|pid:none) Plasmodium knowlesi strain H chro... 201 6e-51
EF667355_1(EF667355|pid:none) Trypanosoma carassii ubiquitin-fus... 201 6e-51
X07451_1(X07451|pid:none) Trypanosoma cruzi ubiquitin gene. &X0... 201 1e-50
AP005393_13(AP005393|pid:none) Oryza sativa Japonica Group genom... 200 2e-50
S34332(A72790;S34332) ubiquitin / ribosomal protein CEP52 (b) - ... 197 9e-50
AP005190_3(AP005190|pid:none) Oryza sativa Japonica Group genomi... 197 1e-49
D78492_1(D78492|pid:none) Brassica rapa mRNA for putative ubiqui... 194 1e-48
AP008215_962(AP008215|pid:none) Oryza sativa (japonica cultivar-... 192 5e-48
AP008215_960(AP008215|pid:none) Oryza sativa (japonica cultivar-... 184 8e-46
EU968253_1(EU968253|pid:none) Zea mays clone 317650 UBiQuitin fa... 184 8e-46
AB201761_1(AB201761|pid:none) Pocillopora damicornis Ub52 mRNA f... 184 1e-45
CP001327_692(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 172 4e-42
S11248(S11248)ubiquitin / ribosomal protein CEP52 - mouse (fragm... 166 4e-40
AY803760_1(AY803760|pid:none) Sebastes schlegeli ubiquitin mRNA,... 165 5e-40
BT079002_1(BT079002|pid:none) Esox lucius clone eluc-evq-516-246... 162 5e-39
S25154(S25154)ubiquitin / ribosomal protein CEP52 - Leishmania m... 157 1e-37
AP008209_971(AP008209|pid:none) Oryza sativa (japonica cultivar-... 155 4e-37
AY389656_1(AY389656|pid:none) Hyacinthus orientalis ubiquitin fu... 154 1e-36
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 153 2e-36
DQ066320_1(DQ066320|pid:none) Ixodes scapularis isolate IS-6-12L... 153 2e-36
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos... 153 2e-36
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 153 2e-36
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 153 2e-36
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 153 2e-36
AB099083_1(AB099083|pid:none) Bos taurus mRNA for similar to pol... 152 3e-36
(Q55DZ5) RecName: Full=Ubiquitin; 151 9e-36
AC115584_9(AC115584|pid:none) Dictyostelium discoideum chromosom... 150 1e-35
Z22614_3(Z22614|pid:none) T.pyriformis polyubiquitin and 5S rRNA... 149 3e-35
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu... 149 4e-35
BC049478_1(BC049478|pid:none) Danio rerio zgc:66168, mRNA (cDNA ... 149 4e-35
AE014296_755(AE014296|pid:none) Drosophila melanogaster chromoso... 149 4e-35
A31560(A31560) polyuciquitin - fruit fly (Drosophila melanogaste... 149 4e-35
S34285(S34285) polyubiquitin - tomato &X73156_1(X73156|pid:none) 149 4e-35
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 149 5e-35
M23750_1(M23750|pid:none) D.discoideum ubiquitin mRNA, complete ... 149 5e-35
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 149 5e-35
DQ115333_1(DQ115333|pid:none) Caenorhabditis remanei ubiquitin p... 149 5e-35
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 149 5e-35
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 149 5e-35
BC093445_1(BC093445|pid:none) Homo sapiens ubiquitin C, mRNA (cD... 148 6e-35
BC054976_1(BC054976|pid:none) Xenopus laevis ubiquitin C, mRNA (... 148 6e-35
AK340525_1(AK340525|pid:none) Acyrthosiphon pisum ACYPI006410 mR... 148 6e-35
D83208_1(D83208|pid:none) Cavia cobaya mRNA for ubiquitin, compl... 148 6e-35
DQ975458_1(DQ975458|pid:none) Capsicum annuum ubiquitin extensio... 148 6e-35
AK339919_1(AK339919|pid:none) Acyrthosiphon pisum ACYPI007765 mR... 148 6e-35
FN357410_7(FN357410|pid:none) Schistosoma mansoni genome sequenc... 148 6e-35
L19056_1(L19056|pid:none) Artemia franciscana ubiquitin mRNA, pa... 148 6e-35
FN357410_6(FN357410|pid:none) Schistosoma mansoni genome sequenc... 148 6e-35
FN315480_1(FN315480|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
FN316690_1(FN316690|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
FJ438516_1(FJ438516|pid:none) Epinephelus coioides ubiquitin C v... 148 8e-35
BC168051_1(BC168051|pid:none) Xenopus tropicalis cDNA clone MGC:... 148 8e-35
AK010964_1(AK010964|pid:none) Mus musculus 13 days embryo liver ... 148 8e-35
BC049473_1(BC049473|pid:none) Danio rerio zgc:172187, mRNA (cDNA... 148 8e-35
BC127395_1(BC127395|pid:none) Danio rerio zgc:153686, mRNA (cDNA... 148 8e-35
AY752852_1(AY752852|pid:none) Culicoides sonorensis clone CsUB1 ... 148 8e-35
AB003730_1(AB003730|pid:none) Homo sapiens gene for polyubiquiti... 148 8e-35
AF506022_1(AF506022|pid:none) Tribolium castaneum isolate pCPUb ... 148 8e-35
FN315482_1(FN315482|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
DQ363465_1(DQ363465|pid:none) Ictalurus punctatus clone C153BB02... 148 8e-35
BC045004_1(BC045004|pid:none) Xenopus laevis similar to ubiquiti... 148 8e-35
FN315486_1(FN315486|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
BC006680_1(BC006680|pid:none) Mus musculus ubiquitin C, mRNA (cD... 148 8e-35
FN316698_1(FN316698|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
FN316688_1(FN316688|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
BT057945_1(BT057945|pid:none) Salmo salar clone ssal-rgf-504-035... 148 8e-35
AY819759_1(AY819759|pid:none) Homo sapiens ubiquitin C splice va... 148 8e-35
BC021837_1(BC021837|pid:none) Mus musculus ubiquitin C, mRNA (cD... 148 8e-35
FN315483_1(FN315483|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
AB122067_1(AB122067|pid:none) Crassostrea gigas mRNA for polyubi... 148 8e-35
AK003190_1(AK003190|pid:none) Mus musculus 18-day embryo whole b... 148 8e-35
D63791_1(D63791|pid:none) Homo sapiens UbC gene for polyubiquiti... 148 8e-35
AY813866_1(AY813866|pid:none) Schistosoma japonicum clone SJCHGC... 148 8e-35
AK291539_1(AK291539|pid:none) Homo sapiens cDNA FLJ75516 complet... 148 8e-35
AL117514_1(AL117514|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0... 148 8e-35
BC114001_1(BC114001|pid:none) Bos taurus polyubiquitin, mRNA (cD... 148 8e-35
BC019850_1(BC019850|pid:none) Mus musculus ubiquitin B, mRNA (cD... 148 8e-35
AK007273_1(AK007273|pid:none) Mus musculus adult male testis cDN... 148 8e-35
FN316689_1(FN316689|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
AY748809_1(AY748809|pid:none) Stauracon pallidus polyubiquitin (... 148 8e-35
AB009010_1(AB009010|pid:none) Homo sapiens UbC1 mRNA for polyubi... 148 8e-35
DQ673439_1(DQ673439|pid:none) Diaphorina citri putative ubiquiti... 148 8e-35
AY394942_1(AY394942|pid:none) Danio rerio clone RK046A2G11 ubiqu... 148 8e-35
BC167447_1(BC167447|pid:none) Danio rerio zgc:172187, mRNA (cDNA... 148 8e-35
D63782_1(D63782|pid:none) Cricetulus sp. gene for polyubiquitin,... 148 8e-35
AK013873_1(AK013873|pid:none) Mus musculus 12 days embryo head c... 148 8e-35
DQ216246_1(DQ216246|pid:none) Taeniopygia guttata clone 0058P001... 148 8e-35
EF473650_1(EF473650|pid:none) Sus scrofa ubiquitin B (UBB) gene,... 148 8e-35
AK168448_1(AK168448|pid:none) Mus musculus 17 days embryo kidney... 148 8e-35
AL953908_5(AL953908|pid:none) Zebrafish DNA sequence from clone ... 148 8e-35
AF003089_1(AF003089|pid:none) Tetrahymena vorax ubiquitin mRNA, ... 148 8e-35
FN316697_1(FN316697|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
DQ216234_1(DQ216234|pid:none) Taeniopygia guttata clone 0058P001... 148 8e-35
I45964(I45964) polyubiquitin - bovine (fragment) &M62428_1(M624... 148 8e-35
BT058428_1(BT058428|pid:none) Salmo salar clone Contig656 Ubiqui... 148 8e-35
FN323948_1(FN323948|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
FN320998_1(FN320998|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
DQ216239_1(DQ216239|pid:none) Taeniopygia guttata clone 0058P004... 148 8e-35
L13783_1(L13783|pid:none) Bovine viral diarrhea virus p125 prote... 148 8e-35
AF285161_1(AF285161|pid:none) Mus musculus cell-line C3H/He poly... 148 8e-35
AF045474_1(AF045474|pid:none) Schistosoma mansoni polyubiquitin ... 148 8e-35
AY254344_1(AY254344|pid:none) Schistosoma japonicum polyubiquiti... 148 8e-35
X08013_1(X08013|pid:none) Chinese hamster mRNA for ubiquitin. 148 8e-35
M17597_1(M17597|pid:none) Human poly-ubiquitin mRNA, complete cds. 148 8e-35
BC080583_1(BC080583|pid:none) Homo sapiens cDNA clone IMAGE:2822... 148 8e-35
A62334_1(A62334|pid:none) Sequence 22 from Patent WO9712992. &A... 148 8e-35
DQ420617_1(DQ420617|pid:none) Anser anser ubiquitin C II mRNA, c... 148 8e-35
FN323968_1(FN323968|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
AF361365_1(AF361365|pid:none) Oncorhynchus mykiss polyubiquitin ... 148 8e-35
M62429_1(M62429|pid:none) Bovine polyubiquitin mRNA, 3' end, clo... 148 8e-35
D17296_1(D17296|pid:none) Rattus norvegicus mRNA for polyubiquit... 148 8e-35
AB089615_1(AB089615|pid:none) Gorilla gorilla UbC gene for polyu... 148 8e-35
AK127995_1(AK127995|pid:none) Homo sapiens cDNA FLJ46113 fis, cl... 148 8e-35
A29584(A29584) ubiquitin precursor - pig (fragment) &M18159_1(M... 148 8e-35
BT058528_1(BT058528|pid:none) Salmo salar clone Contig1643 Ubiqu... 148 8e-35
DQ216243_1(DQ216243|pid:none) Taeniopygia guttata clone 0058P001... 148 8e-35
EU306853_1(EU306853|pid:none) Drosophila silvestris clone sv3E-T... 148 8e-35
DQ216252_1(DQ216252|pid:none) Taeniopygia guttata clone 0058P000... 148 8e-35
AK056939_1(AK056939|pid:none) Homo sapiens cDNA FLJ32377 fis, cl... 148 8e-35
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub... 148 8e-35
FN316687_1(FN316687|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
DQ216232_1(DQ216232|pid:none) Taeniopygia guttata clone 0058P006... 148 8e-35
AY891423_1(AY891423|pid:none) Synthetic construct Homo sapiens c... 148 8e-35
FN323975_1(FN323975|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
DQ216235_1(DQ216235|pid:none) Taeniopygia guttata clone 0058P004... 148 8e-35
FN321000_1(FN321000|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
BC103477_1(BC103477|pid:none) Rattus norvegicus ubiquitin C, mRN... 148 8e-35
FN315485_1(FN315485|pid:none) Schistosoma japonicum isolate Anhu... 148 8e-35
S40611(S40611;S34707) polyubiquitin 5 - Volvox carteri &X74214_... 147 1e-34
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 147 1e-34
AJ416499_1(AJ416499|pid:none) Pleurotus ostreatus partial mRNA f... 147 1e-34
FN323957_1(FN323957|pid:none) Schistosoma japonicum isolate Anhu... 147 1e-34
AF104020_1(AF104020|pid:none) Bovine viral diarrhea virus-2 subg... 147 1e-34
AM117573_1(AM117573|pid:none) Paralvinella grasslei partial gene... 147 1e-34
AB098957_1(AB098957|pid:none) Bos taurus mRNA for similar to ubi... 147 1e-34
DQ353761_1(DQ353761|pid:none) Ictalurus punctatus isolate C16JH0... 147 1e-34
S42643(S42643)ubiquitin / ribosomal protein S27a - potato (fragm... 147 1e-34
AF104026_1(AF104026|pid:none) Bovine viral diarrhea virus-2 subg... 147 1e-34
AM910995_106(AM910995|pid:none) Plasmodium knowlesi strain H chr... 147 1e-34
JC5489(JC5489) polyubiquitin 5 - Tetrahymena thermophila &U4656... 147 1e-34
FN323949_1(FN323949|pid:none) Schistosoma japonicum isolate Anhu... 147 1e-34
AF104024_1(AF104024|pid:none) Bovine viral diarrhea virus-2 subg... 147 1e-34
AF104021_1(AF104021|pid:none) Bovine viral diarrhea virus-2 subg... 147 1e-34
AF060501_1(AF060501|pid:none) Botryotinia fuckeliana polyubiquit... 147 1e-34
S43306(S43306)polyubiquitin 6 - Geodia cydonium 147 1e-34
AF104025_1(AF104025|pid:none) Bovine viral diarrhea virus-2 subg... 147 1e-34
AY485340_1(AY485340|pid:none) Schistosoma mansoni ubiquitin mRNA... 147 1e-34
Y12082_1(Y12082|pid:none) Suberites domuncula mRNA for polyubiqu... 147 1e-34
AF104022_1(AF104022|pid:none) Bovine viral diarrhea virus-2 subg... 147 1e-34
AE017351_259(AE017351|pid:none) Cryptococcus neoformans var. neo... 147 1e-34
BT076264_1(BT076264|pid:none) Caligus rogercresseyi clone crog-e... 147 1e-34
AM117576_1(AM117576|pid:none) Alvinella caudata partial gene for... 147 1e-34
AB170649_1(AB170649|pid:none) Macaca fascicularis brain cDNA clo... 147 1e-34
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526... 147 1e-34
AF321441_1(AF321441|pid:none) Galleria mellonella polyubiquitin ... 147 1e-34
S55244(S55244;S61069)polyubiquitin 4 - Arabidopsis thaliana 147 1e-34
U32627_1(U32627|pid:none) Candida albicans ubiquitin precursor (... 147 1e-34
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 147 1e-34
AY961529_1(AY961529|pid:none) Lysiphlebus testaceipes ribosomal ... 147 1e-34
A49768(A49768) polyubiquitin - sea urchin (Strongylocentrotus pu... 147 1e-34
Z35759_1(Z35759|pid:none) T.pyriformis (CGL) polyubiquitin gene ... 147 1e-34
AK300882_1(AK300882|pid:none) Homo sapiens cDNA FLJ51326 complet... 147 2e-34
AE014188_117(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 147 2e-34
BT058174_1(BT058174|pid:none) Salmo salar clone Contig1232 Ubiqu... 147 2e-34
S11296(S11296)polyubiquitin (clone arf3) - mouse (fragment) 147 2e-34
EF147813_1(EF147813|pid:none) Populus trichocarpa clone WS0125_D... 147 2e-34
AY732488_1(AY732488|pid:none) Homo sapiens ubiquitin C splice va... 147 2e-34
BC157791_1(BC157791|pid:none) Xenopus tropicalis hypothetical pr... 147 2e-34
AB018107_9(AB018107|pid:none) Arabidopsis thaliana genomic DNA, ... 147 2e-34
AJ243800_3(AJ243800|pid:none) Kluyveromyces lactis rim101 (parti... 147 2e-34
CR940347_507(CR940347|pid:none) Theileria annulata strain Ankara... 147 2e-34
BT075650_1(BT075650|pid:none) Osmerus mordax clone omor-rgc-508-... 147 2e-34
X94621_1(X94621|pid:none) C.alpestris ubiquitin gene. 147 2e-34
DQ216250_1(DQ216250|pid:none) Taeniopygia guttata clone 0058P002... 147 2e-34
AB098769_1(AB098769|pid:none) Bos taurus mRNA for similar to pol... 147 2e-34
X02650_1(X02650|pid:none) Chicken mRNA for ubiquitin. 147 2e-34
U61404_1(U61404|pid:none) Manduca sexta polyubiquitin gene, 5' r... 147 2e-34
AB111967_1(AB111967|pid:none) Bovine viral diarrhea virus T-20 g... 147 2e-34
AF517849_1(AF517849|pid:none) Griffithsia japonica isolate Gj532... 147 2e-34
M11691_1(M11691|pid:none) Synthetic beta-galactosidase/mouse ubi... 147 2e-34
FN316696_1(FN316696|pid:none) Schistosoma japonicum isolate Anhu... 147 2e-34
X98063_1(X98063|pid:none) P.sylvestris mRNA for polyubiquitin. 147 2e-34
AB099044_1(AB099044|pid:none) Bos taurus mRNA for similar to pol... 147 2e-34
L81141_1(L81141|pid:none) Pisum sativum (Alaska) ubiquitin (PUB3... 147 2e-34
AY318871_96(AY318871|pid:none) Canarypox virus strain ATCC VR-11... 147 2e-34
AF188158_1(AF188158|pid:none) Oxytricha trifallax ubiquitin gene... 147 2e-34
DQ278173_1(DQ278173|pid:none) Theileria lestoquardi clone 34 unk... 147 2e-34
AY751539_1(AY751539|pid:none) Cloning vector pHUE, complete sequ... 147 2e-34
AF061807_1(AF061807|pid:none) Elaeagnus umbellata polyubiquitin ... 146 2e-34
EU348739_1(EU348739|pid:none) Adonis aestivalis var. palaestina ... 146 2e-34
M74156_1(M74156|pid:none) Nicotiana sylvestris (clone 6PU4) pent... 146 2e-34
UQFS(S03599)ubiquitin precursor - common sunflower (fragment) 146 2e-34
EF134146_1(EF134146|pid:none) Karlodinium micrum strain CCMP1975... 146 2e-34
AJ007936_1(AJ007936|pid:none) Gibberella pulicaris ubi1 gene. &... 146 2e-34
AE016816_144(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 146 2e-34
CU928169_242(CU928169|pid:none) Kluyveromyces thermotolerans str... 146 2e-34
AL161503_16(AL161503|pid:none) Arabidopsis thaliana DNA chromoso... 146 2e-34
Y17004_1(Y17004|pid:none) Suberites domuncula mRNA for monoubiqu... 146 2e-34
CP000592_120(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 146 2e-34
AB033601_1(AB033601|pid:none) Cucumis melo mRNA for polyubiquiti... 146 2e-34
CR380950_216(CR380950|pid:none) Candida glabrata strain CBS138 c... 146 2e-34
AF322415_1(AF322415|pid:none) Synthetic construct HPV type 6b hu... 146 2e-34
X01474_1(X01474|pid:none) Yeast gene fragment for polyubiquitin ... 146 2e-34
EF134217_1(EF134217|pid:none) Noctiluca scintillans isolate Nsc-... 146 2e-34
AB005240_15(AB005240|pid:none) Arabidopsis thaliana genomic DNA,... 146 2e-34
JQ1728(JQ1728)ubiquitin precursor - Arabidopsis thaliana (fragme... 146 2e-34
EU436761_1(EU436761|pid:none) Sandersonia aurantiaca clone SAND7... 146 2e-34
EU586198_1(EU586198|pid:none) Malus x domestica cultivar Fuji po... 146 2e-34
DQ118117_1(DQ118117|pid:none) Lupinus albus polyubiquitin mRNA, ... 146 2e-34
BT052956_1(BT052956|pid:none) Medicago truncatula clone MTYFL_FM... 146 2e-34
FN392322_794(FN392322|pid:none) Pichia pastoris GS115 chromosome... 146 2e-34
AC152972_3(AC152972|pid:none) Oryza sativa (japonica cultivar-gr... 146 2e-34
AF502575_1(AF502575|pid:none) Musa acuminata ubiquitin (UBQ1) ge... 146 2e-34
JT0492(JT0492) ubiquitin 2 - Tetrahymena pyriformis (fragment) ... 146 2e-34
U84969_1(U84969|pid:none) Arabidopsis thaliana ubiquitin (UBQ11)... 146 2e-34
CR954212_116(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 146 2e-34
DQ011576_1(DQ011576|pid:none) Euphorbia characias polyubiquitin ... 146 2e-34
EU081898_1(EU081898|pid:none) Triticum aestivum polyubiquitin (W... 146 2e-34
CU928179_320(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 146 2e-34
AY375335_1(AY375335|pid:none) Gossypium barbadense fiber polyubi... 146 2e-34
DQ914562_1(DQ914562|pid:none) Porphyra yezoensis polyubiquitin (... 146 2e-34
AF502576_1(AF502576|pid:none) Musa acuminata ubiquitin (UBQ2) ge... 146 2e-34
AY042884_1(AY042884|pid:none) Arabidopsis thaliana Unknown prote... 146 2e-34
AF528678_1(AF528678|pid:none) Arabidopsis lyrata putative polyub... 146 2e-34
AF035383_1(AF035383|pid:none) Arabidopsis thaliana polyubiquitin... 146 2e-34
DQ887067_1(DQ887067|pid:none) Arachis hypogaea polyubiquitin 10 ... 146 2e-34
AL662988_4(AL662988|pid:none) Oryza sativa genomic DNA, chromoso... 146 2e-34
T12035(T12035) polyubiquitin 4.4 - kidney bean &U77939_1(U77939... 146 2e-34
AP007155_1027(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 146 2e-34
AY954394_1(AY954394|pid:none) Oryza sativa (japonica cultivar-gr... 146 2e-34
AF323508_1(AF323508|pid:none) Synthetic construct HPV type 6b hu... 146 2e-34
AF429429_1(AF429429|pid:none) Olea europaea polyubiquitin OUB1 m... 146 2e-34
DQ793132_1(DQ793132|pid:none) Arabidopsis thaliana ubiquitin (UB... 146 2e-34
Y17558_1(Y17558|pid:none) Candida albicans UB14 gene. 146 2e-34
AF528705_1(AF528705|pid:none) Arabidopsis thaliana ecotype Lisse... 146 2e-34
AF104023_1(AF104023|pid:none) Bovine viral diarrhea virus-2 subg... 146 2e-34
AJ437537_1(AJ437537|pid:none) Oryza sativa partial mRNA for poly... 146 2e-34
BT000701_1(BT000701|pid:none) Arabidopsis thaliana clone RAFL08-... 146 2e-34
AY478418_1(AY478418|pid:none) Clusia minor polyubiquitin (Ubq1) ... 146 2e-34
AF528710_1(AF528710|pid:none) Arabidopsis thaliana ecotype Ita-0... 146 2e-34
AJ844617_1(AJ844617|pid:none) Plantago major mRNA for polyubiqui... 146 2e-34
S17436(S17436) ubiquitin precursor UbB2 - common sunflower (frag... 146 2e-34
EU139195_1(EU139195|pid:none) Flustra foliacea ubiquinated putat... 146 2e-34
AB090878_1(AB090878|pid:none) Aster tripolium mRNA for polyubiqu... 146 2e-34
AF184279_1(AF184279|pid:none) Oryza sativa polyubiquitin (RUBQ1)... 146 2e-34
AF436850_1(AF436850|pid:none) Cucumis melo polyubiquitin mRNA, p... 146 2e-34
AY117055_1(AY117055|pid:none) Gossypium herbaceum putative polyu... 146 2e-34
AF031628_1(AF031628|pid:none) Schizophyllum commune polyubiquiti... 146 2e-34
AY098526_1(AY098526|pid:none) Ananas comosus tetrameric ubiquiti... 146 2e-34
UQBY(D29456;S64790;B22696;A22696) polyubiquitin 5 - yeast (Sacch... 146 2e-34
FM992690_680(FM992690|pid:none) Candida dubliniensis CD36 chromo... 146 2e-34
U43128_1(U43128|pid:none) Naegleria fowleri ubiquitin mRNA, part... 146 2e-34
DQ914563_1(DQ914563|pid:none) Porphyra yezoensis polyubiquitin (... 146 2e-34
AY275680_1(AY275680|pid:none) Hevea brasiliensis ubiquitin mRNA,... 146 2e-34
CR382131_778(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 146 2e-34
AF088848_1(AF088848|pid:none) Capsicum chinense polyubiquitin (U... 146 2e-34
(P14792) RecName: Full=Ubiquitin; &(P59669) RecName: Fu &EF1015... 146 2e-34
AC149642_19(AC149642|pid:none) Medicago truncatula chromosome 2 ... 146 2e-34
DQ793134_1(DQ793134|pid:none) Arabidopsis thaliana ubiquitin (UB... 146 2e-34
BT052981_1(BT052981|pid:none) Medicago truncatula clone MTYFL_FM... 146 2e-34
EF576109_1(EF576109|pid:none) Oryza sativa (indica cultivar-grou... 146 2e-34
D12776_1(D12776|pid:none) Oryza sativa Japonica Group mRNA for p... 146 2e-34
EF145885_1(EF145885|pid:none) Populus trichocarpa clone WS0114_A... 146 2e-34
AK228265_1(AK228265|pid:none) Arabidopsis thaliana mRNA for poly... 146 2e-34
U29158_1(U29158|pid:none) Zea mays polyubiquitin (MubC5) mRNA, c... 146 2e-34
A25062(A25062) ubiquitin precursor - barley (fragment) &X04133_... 146 2e-34
S30151(S30151;S30152) polyubiquitin 6 - parsley &X64344_1(X6434... 146 2e-34
S17435(S17435;S17437) polyubiquitin 6 - common sunflower &X5700... 146 2e-34
AL031854_8(AL031854|pid:none) S.pombe chromosome II cosmid c337.... 146 2e-34
EF576130_1(EF576130|pid:none) Oryza sativa (indica cultivar-grou... 146 2e-34
BT071477_1(BT071477|pid:none) Picea sitchensis clone WS02916_A12... 146 2e-34
DQ438989_1(DQ438989|pid:none) Malus x domestica polyubiquitin mR... 146 2e-34
L22576_1(L22576|pid:none) Solanum tuberosum ubiquitin/ribosomal ... 146 3e-34
EF120638_1(EF120638|pid:none) Hevea brasiliensis ubiquitin exten... 146 3e-34
(Q8SWD4) RecName: Full=Ubiquitin; Flags: Precursor; &AL590442_7... 146 3e-34
AF298826_1(AF298826|pid:none) Prunus avium ubiquitin/ribosomal p... 146 3e-34
DQ517325_1(DQ517325|pid:none) Pectinaria gouldii ubiquitin/ribos... 146 3e-34
AM426496_4(AM426496|pid:none) Vitis vinifera contig VV78X245184.... 146 3e-34
Z28649_1(Z28649|pid:none) Acetabularia cliftonii gene for polyub... 146 3e-34
AP008211_348(AP008211|pid:none) Oryza sativa (japonica cultivar-... 146 3e-34
AY072292_1(AY072292|pid:none) Spodoptera frugiperda ribosomal pr... 146 3e-34
AC141106_28(AC141106|pid:none) Medicago truncatula clone mth2-33... 146 3e-34
DQ445503_1(DQ445503|pid:none) Graphocephala atropunctata isolate... 146 3e-34
DQ200392_1(DQ200392|pid:none) Solanum tuberosum clone 068E12 ubi... 146 3e-34
AM040011_1(AM040011|pid:none) Agriotes lineatus mRNA for ubiquit... 146 3e-34
EF144484_1(EF144484|pid:none) Populus trichocarpa clone PX0019_L... 146 3e-34
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019... 146 3e-34
EU558303_1(EU558303|pid:none) Novocrania anomala putative ubiqui... 146 3e-34
UQWO7A(S13136) ubiquitin / ribosomal protein S27a - tobacco horn... 146 3e-34
DQ839403_1(DQ839403|pid:none) Morus bombycis ubiquitin extension... 146 3e-34
(P23398) RecName: Full=Ubiquitin; 146 3e-34
S55245(S55245)polyubiquitin 5 - Arabidopsis thaliana 146 3e-34
EU284858_1(EU284858|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 145 4e-34
AM040015_1(AM040015|pid:none) Micromalthus debilis mRNA for ubiq... 145 4e-34
BT058181_1(BT058181|pid:none) Salmo salar clone Contig1385 Ubiqu... 145 4e-34
AE014134_1952(AE014134|pid:none) Drosophila melanogaster chromos... 145 4e-34
BT043890_1(BT043890|pid:none) Salmo salar clone HM4_3735 ribosom... 145 4e-34
AB098891_1(AB098891|pid:none) Bos taurus mRNA for similar to ubi... 145 4e-34
EU558350_1(EU558350|pid:none) Phoronis muelleri putative ubiquit... 145 4e-34
DQ216251_1(DQ216251|pid:none) Taeniopygia guttata clone 0063P002... 145 4e-34
AK018706_1(AK018706|pid:none) Mus musculus adult male kidney cDN... 145 4e-34
AB291582_1(AB291582|pid:none) Solea senegalensis rpS27a mRNA for... 145 4e-34
BT073985_1(BT073985|pid:none) Oncorhynchus mykiss clone omyk-evo... 145 4e-34
(P0C274) RecName: Full=Ubiquitin; &(P62972) RecName: Fu &(P6297... 145 4e-34
CS362629_1(CS362629|pid:none) Sequence 9 from Patent WO2006073320. 145 4e-34
BT083357_1(BT083357|pid:none) Anoplopoma fimbria clone afim-evh-... 145 4e-34
EU247124_1(EU247124|pid:none) Lycosa singoriensis 60S ribosomal ... 145 4e-34
X87156_1(X87156|pid:none) Acanthamoeba sp. 4b3 polyubiquitin gene. 145 4e-34
AY752793_1(AY752793|pid:none) Culicoides sonorensis clone CsARU ... 145 4e-34
AK341054_1(AK341054|pid:none) Acyrthosiphon pisum ACYPI000086 mR... 145 4e-34
BC053371_1(BC053371|pid:none) Homo sapiens ribosomal protein S27... 145 4e-34
UQNC(S05323) polyubiquitin 4 - Neurospora crassa &X13140_1(X131... 145 4e-34
M24507_1(M24507|pid:none) Synthetic human ubiquitin (UBCEP80) ge... 145 4e-34
EF633956_1(EF633956|pid:none) Ornithodoros parkeri clone OP-73 u... 145 4e-34
AJ575140_1(AJ575140|pid:none) Sordaria macrospora partial smu599... 145 4e-34
U67931_1(U67931|pid:none) Gallus gallus ubiquitin/ribosomal prot... 145 4e-34
AJ277169_1(AJ277169|pid:none) Galdieria sulphuraria mRNA for ubi... 145 4e-34
AJ937554_1(AJ937554|pid:none) Collozoum inerme partial pub gene,... 145 4e-34
AJ309010_1(AJ309010|pid:none) Nicotiana tabacum mRNA for polyubi... 145 5e-34
UQSY(S02222)ubiquitin precursor - soybean (fragment) 145 5e-34
AB045758_1(AB045758|pid:none) Physarum polycephalum ppub4 mRNA f... 145 5e-34
AY552058_1(AY552058|pid:none) Aedes aegypti ribosomal protein S2... 145 5e-34
AF093505_1(AF093505|pid:none) Saccharum hybrid cultivar H32-8560... 145 5e-34
AM494972_376(AM494972|pid:none) Leishmania braziliensis chromoso... 145 5e-34
DQ336883_1(DQ336883|pid:none) Zinnia elegans putative pentameric... 145 5e-34
S12161(S12161)polyubiquitin - large-leaved lupine (fragment) 145 5e-34
EU953492_1(EU953492|pid:none) Zea mays clone 1424191 unknown mRNA. 145 5e-34
AM494963_268(AM494963|pid:none) Leishmania braziliensis chromoso... 145 5e-34
(P19848) RecName: Full=Ubiquitin; &AB210844_1(AB210844|pid:none... 145 5e-34
AM466823_1(AM466823|pid:none) Vitis vinifera contig VV78X042351.... 145 5e-34
AJ698912_1(AJ698912|pid:none) Fusarium fujikuroi partial mRNA fo... 145 5e-34
AY748808_1(AY748808|pid:none) Sphaerozoum italicum polyubiquitin... 145 5e-34
AB045756_1(AB045756|pid:none) Physarum polycephalum ppub2 mRNA f... 145 5e-34
AP003725_1(AP003725|pid:none) Oryza sativa Japonica Group genomi... 145 5e-34
AY086062_1(AY086062|pid:none) Arabidopsis thaliana clone 20908 m... 145 5e-34
EF676259_1(EF676259|pid:none) Picea sitchensis clone WS02724_L09... 145 5e-34
AF056625_1(AF056625|pid:none) Magnaporthe grisea strain Guy-11 p... 145 5e-34
EU952265_1(EU952265|pid:none) Zea mays clone 1273639 unknown mRNA. 145 5e-34
DQ267236_1(DQ267236|pid:none) Tragopogon dubius clone TDUBUBQ pu... 145 5e-34
AY785814_1(AY785814|pid:none) Oryza sativa (indica cultivar-grou... 145 5e-34
A63899_1(A63899|pid:none) Sequence 24 from Patent WO9723633. &C... 145 5e-34
EU586196_1(EU586196|pid:none) Malus x domestica cultivar Fuji po... 145 5e-34
AF060232_1(AF060232|pid:none) Botryotinia fuckeliana monoubiquit... 145 5e-34
U26831_1(U26831|pid:none) Solanum tuberosum polyubiquitin gene, ... 145 5e-34
DQ445914_1(DQ445914|pid:none) Gladiolus grandiflorus polyubiquit... 145 5e-34
AY748807_1(AY748807|pid:none) Collozoum sp. DDM-2005 polyubiquit... 145 5e-34
DQ104334_1(DQ104334|pid:none) Morus mongolica ubiquitin monomer ... 145 5e-34
AB045757_1(AB045757|pid:none) Physarum polycephalum ppub3 mRNA f... 145 5e-34
AE016820_243(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 145 5e-34
AP008212_1813(AP008212|pid:none) Oryza sativa (japonica cultivar... 145 5e-34
EU972519_1(EU972519|pid:none) Zea mays clone 382655 unknown mRNA. 145 5e-34
AC004512_13(AC004512|pid:none) Arabidopsis thaliana chromosome 1... 145 5e-34
(P20685) RecName: Full=Ubiquitin; 145 5e-34
U45317_1(U45317|pid:none) Litomosoides sigmodontis ubiquitin c-t... 145 5e-34
EU952980_1(EU952980|pid:none) Zea mays clone 1372904 unknown mRNA. 145 5e-34
AY303168_2(AY303168|pid:none) Degron tagging vector pSMUG2+ beta... 145 7e-34
(O46543) RecName: Full=Ubiquitin; 145 7e-34
(P42740) RecName: Full=Ubiquitin; 145 7e-34
UQUTC(S00510) ubiquitin precursor - Trypanosoma cruzi (fragment)... 144 9e-34
AM040016_1(AM040016|pid:none) Timarcha balearica mRNA for ubiqui... 144 9e-34
EU428780_1(EU428780|pid:none) Plutella xylostella ubiquitin gene... 144 9e-34
X74405_5(X74405|pid:none) Artemia franciscana gene for polyubiqu... 144 9e-34
AM040014_1(AM040014|pid:none) Eucinetus sp. APV-2005 mRNA for ub... 144 9e-34
BT073733_1(BT073733|pid:none) Oncorhynchus mykiss clone omyk-evo... 144 9e-34
EF146368_1(EF146368|pid:none) Populus trichocarpa clone WS0117_J... 144 1e-33
AJ243802_2(AJ243802|pid:none) Kluyveromyces lactis ORF YDR183W (... 144 1e-33
CQ918486_1(CQ918486|pid:none) Sequence 6 from Patent WO2004097011. 144 1e-33
CR382132_415(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 144 1e-33
AF056624_1(AF056624|pid:none) Magnaporthe grisea strain Guy-11 u... 144 1e-33
DQ320121_3(DQ320121|pid:none) Binary vector pBINPLUS/ARS, comple... 144 1e-33
EU153190_1(EU153190|pid:none) Heterocapsa triquetra clone Htr-cD... 144 1e-33
JH0226(JH0226) ubiquitin / ribosomal protein S27a.1 - barley &M... 144 1e-33
CS362623_1(CS362623|pid:none) Sequence 3 from Patent WO2006073320. 144 1e-33
EU328536_1(EU328536|pid:none) Lolium temulentum ubiquitin (UBQ) ... 144 1e-33
AM040013_1(AM040013|pid:none) Curculio glandium partial mRNA for... 144 1e-33
EU007433_1(EU007433|pid:none) Catharanthus roseus ubiquitin (UBQ... 144 1e-33
EU959003_1(EU959003|pid:none) Zea mays clone 208868 40S ribosoma... 144 1e-33
AY372537_1(AY372537|pid:none) Cucumis sativus ubiquitin extensio... 144 1e-33
CR382139_690(CR382139|pid:none) Debaryomyces hansenii strain CBS... 144 1e-33
BT051458_1(BT051458|pid:none) Medicago truncatula clone MTYF1_F2... 144 1e-33
U29160_1(U29160|pid:none) Zea mays clone MubG10 ubiquitin fusion... 144 1e-33
BT035083_1(BT035083|pid:none) Zea mays full-length cDNA clone ZM... 144 1e-33
UQJNI(S17740;S14579) ubiquitin precursor - Phytophthora infestan... 144 1e-33
AY862433_1(AY862433|pid:none) Navicula pelliculosa polyubiquitin... 144 1e-33
EU952584_1(EU952584|pid:none) Zea mays clone 1283821 40S ribosom... 144 1e-33
S40239(S40239) ubiquitin/ribosomal protein S27a fusion protein -... 144 1e-33
U17246_2(U17246|pid:none) Saccharomyces cerevisiae chromosome XI... 144 1e-33
CP001333_164(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 144 1e-33
CU928175_164(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 144 1e-33
CQ918481_1(CQ918481|pid:none) Sequence 1 from Patent WO2004097011. 144 1e-33
BT051253_1(BT051253|pid:none) Medicago truncatula clone MTYF1_F2... 144 1e-33
M31426_1(M31426|pid:none) Synthetic yeast (S.cerevisiae) ubiquit... 144 1e-33
CP001325_12(CP001325|pid:none) Micromonas sp. RCC299 chromosome ... 144 1e-33
AM442845_1(AM442845|pid:none) Vitis vinifera contig VV78X064871.... 144 1e-33
AC005292_28(AC005292|pid:none) Genomic sequence for Arabidopsis ... 144 1e-33
EU967930_1(EU967930|pid:none) Zea mays clone 311453 40S ribosoma... 144 1e-33
AY297059_1(AY297059|pid:none) Triticum aestivum ubiquitin (WUB1)... 144 1e-33
EF470423_1(EF470423|pid:none) Lolium perenne ubiquitin (UBQ) mRN... 144 1e-33
CR380953_349(CR380953|pid:none) Candida glabrata strain CBS138 c... 144 1e-33
AC004411_6(AC004411|pid:none) Arabidopsis thaliana chromosome 2 ... 144 1e-33
(P0C033) RecName: Full=Ubiquitin-like protein 1; 144 1e-33
BT049653_1(BT049653|pid:none) Salmo salar clone ssal-evd-544-065... 144 1e-33
AF175521_1(AF175521|pid:none) Emericella nidulans UBI1 (ubi1) mR... 144 1e-33
EF676128_1(EF676128|pid:none) Picea sitchensis clone WS02711_O04... 144 1e-33
M33014_1(M33014|pid:none) D.melanogaster ubiquitin gene, 5' end. 144 1e-33
AJ297726_1(AJ297726|pid:none) Ciona intestinalis mRNA for putati... 144 1e-33
M33016_1(M33016|pid:none) D.melanogaster ubiquitin gene, 5' end. 144 1e-33
(P42739) RecName: Full=Ubiquitin; 144 1e-33
M96687_1(M96687|pid:none) Bovine viral diarrhea virus strain Osl... 144 1e-33
AF502248_1(AF502248|pid:none) Epinephelus coioides 40s ribosomal... 144 1e-33
AJ965259_1(AJ965259|pid:none) Dasytricha ruminantium partial mRN... 143 2e-33
EU433567_1(EU433567|pid:none) Monochamus alternatus ubiquitin mR... 143 2e-33
AJ965273_1(AJ965273|pid:none) Polyplastron multivesiculatum part... 143 2e-33
EU586197_1(EU586197|pid:none) Malus x domestica cultivar Fuji po... 143 2e-33
AJ965268_1(AJ965268|pid:none) Eudiplodinium maggii partial mRNA ... 143 2e-33
AJ965270_1(AJ965270|pid:none) Polyplastron multivesiculatum part... 143 2e-33
AJ965276_1(AJ965276|pid:none) Epidinium ecaudatum partial mRNA f... 143 2e-33
M22218_1(M22218|pid:none) Synthetic human ubiquitin gene (Thr66-... 143 2e-33
AF240445_1(AF240445|pid:none) Populus tremula x Populus tremuloi... 143 2e-33
(P13117) RecName: Full=Ubiquitin; 143 2e-33
(P49634) RecName: Full=Ubiquitin; 143 2e-33
M21581_1(M21581|pid:none) Synthetic human ubiquitin gene (Thr14-... 143 2e-33
AJ965257_1(AJ965257|pid:none) Dasytricha ruminantium partial mRN... 143 2e-33
AJ965274_1(AJ965274|pid:none) Polyplastron multivesiculatum part... 143 2e-33
DQ830978_1(DQ830978|pid:none) Nicotiana tabacum ubiquitin (UB1) ... 143 2e-33
AJ937553_1(AJ937553|pid:none) Collozoum inerme partial pub gene,... 143 2e-33
CQ904363_1(CQ904363|pid:none) Sequence 1 from Patent WO2004085466. 143 2e-33
AJ965263_1(AJ965263|pid:none) Isotricha prostoma partial mRNA fo... 143 2e-33
AJ965277_1(AJ965277|pid:none) Epidinium ecaudatum partial mRNA f... 143 2e-33
AJ965271_1(AJ965271|pid:none) Polyplastron multivesiculatum part... 143 2e-33
X92422_1(X92422|pid:none) Z.mays mRNA for ubiquitin/ribosomal pr... 143 3e-33
Z22614_1(Z22614|pid:none) T.pyriformis polyubiquitin and 5S rRNA... 143 3e-33
UQUYSF(B34813)ubiquitin - fall armyworm (fragment) 143 3e-33
DQ986352_1(DQ986352|pid:none) Synthetic construct ubiquitin K48R... 143 3e-33
EF144403_1(EF144403|pid:none) Populus trichocarpa clone PX0019_E... 143 3e-33
AY521661_1(AY521661|pid:none) Pseudopleuronectes americanus 40S ... 143 3e-33
M22214_1(M22214|pid:none) Synthetic human ubiquitin gene (Phe4- ... 142 3e-33
AY099133_1(AY099133|pid:none) Cercomonas edax isolate pub5 polyu... 142 3e-33
>M23749_1(M23749|pid:none) D.discoideum ubiquitin mRNA, complete
cds, clone DCUBV45. &UQDOR(S00357;A25863)
&X07210_1(X07210|pid:none)
Length = 128
Score = 250 bits (638), Expect = 1e-65
Identities = 122/122 (100%), Positives = 122/122 (100%)
Frame = +1
Query: 28 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 207
MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 208 IQKESTLHLVLRLRGGIEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNL 387
IQKESTLHLVLRLRGGIEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNL
Sbjct: 61 IQKESTLHLVLRLRGGIEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNL 120
Query: 388 RP 393
RP
Sbjct: 121 RP 122
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 739,172,432
Number of extensions: 14623626
Number of successful extensions: 31906
Number of sequences better than 10.0: 1279
Number of HSP's gapped: 31765
Number of HSP's successfully gapped: 2347
Length of query: 165
Length of database: 1,051,180,864
Length adjustment: 119
Effective length of query: 46
Effective length of database: 666,030,343
Effective search space: 30637395778
Effective search space used: 30637395778
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
1 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
1 |
| FC-IC (SUB) |
0 |