Contig-U15187-1 |
Contig ID |
Contig-U15187-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1568 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
6 |
Number of EST |
11 |
Link to clone list |
U15187 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.15 |
Homology vs DNA |
Query= Contig-U15187-1 (Contig-U15187-1Q) /CSM_Contig/Contig-U15187-1Q.Seq.d (1568 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ430841) Dictyostelium discoideum cDNA clone:ddv9b05, 3' e... 688 0.0 2 (BJ428691) Dictyostelium discoideum cDNA clone:ddv12j22, 3' ... 646 0.0 2 (AU284654) Dictyostelium discoideum gamete cDNA clone:FC-BG0... 353 0.0 4 (BJ429369) Dictyostelium discoideum cDNA clone:ddv3b12, 3' e... 440 0.0 2 (BJ412551) Dictyostelium discoideum cDNA clone:ddv9b05, 5' e... 373 e-137 4 (C90749) Dictyostelium discoideum slug cDNA, clone SSJ105. 373 e-136 6 (BJ410526) Dictyostelium discoideum cDNA clone:ddv12j22, 5' ... 349 e-123 4 (AU265904) Dictyostelium discoideum vegetative cDNA clone:VS... 361 e-122 4 (BJ413169) Dictyostelium discoideum cDNA clone:ddv14o11, 5' ... 373 e-122 3 (AU074563) Dictyostelium discoideum slug cDNA, clone SSL275. 438 e-118 1 (BJ431514) Dictyostelium discoideum cDNA clone:ddv14o11, 3' ... 337 e-109 2 (AU039061) Dictyostelium discoideum slug cDNA, clone SSM334. 392 e-105 2 (AU265905) Dictyostelium discoideum vegetative cDNA clone:VS... 313 1e-80 1 (BJ411166) Dictyostelium discoideum cDNA clone:ddv3b12, 5' e... 226 6e-73 3 (AU284655) Dictyostelium discoideum gamete cDNA clone:FC-BG0... 100 9e-35 2 (CF435475) EST671820 normalized cDNA library of onion Allium... 42 0.004 2 (AC203993) Zea mays chromosome 7 clone CH201-279G21; ZMMBBc0... 56 0.004 1 (CF449952) EST686297 normalized cDNA library of onion Allium... 42 0.014 2 (CF439422) EST675767 normalized cDNA library of onion Allium... 42 0.014 2 (CF435575) EST671920 normalized cDNA library of onion Allium... 42 0.014 2 (AR546880) Sequence 2011 from patent US 6747137. 54 0.017 1 (AY232266) Dictyostelium discoideum putative protein Roco4 (... 54 0.017 1 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 54 0.017 1 (AC179025) Strongylocentrotus purpuratus clone R3-32M8, WORK... 54 0.017 1 (FH900045) CHO_ONF068xj18f1.ab1 CHO_ONF Nicotiana tabacum ge... 54 0.017 1 (CE230328) tigr-gss-dog-17000333286635 Dog Library Canis lup... 54 0.017 1 (DU102937) JBnY032L02F Brassica napus BAC library JBnY Brass... 52 0.027 2 (AC115768) Mus musculus chromosome 19, clone RP23-107E10, co... 42 0.042 2 (AZ752914) RPCI-24-116C8.TJ RPCI-24 Mus musculus genomic clo... 42 0.054 2 (BX539347) Zebrafish DNA sequence from clone CH211-262E15 in... 52 0.067 1 (BV211532) BARC173 Wheat var Chinese Spring Genomic DNA Trit... 52 0.067 1 (AC126277) Mus musculus BAC clone RP23-161L22 from 12, compl... 52 0.067 1 (U29872) Neocallimastix patriciarum cellobiohydrolase precur... 52 0.067 1 (FJ216422) Neocallimastix patriciarum cellobiohydrolase (cbh... 52 0.067 1 (EU314933) Neocallimastix patriciarum cellobiohydrolase (cbh... 52 0.067 1 (CR382121) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 52 0.067 1 (AY850394) Lycopersicon esculentum cultivar Heinz1706 chromo... 52 0.067 1 (AM478498) Vitis vinifera contig VV78X099558.20, whole genom... 52 0.067 1 (AM440946) Vitis vinifera, whole genome shotgun sequence, co... 52 0.067 1 (AF529295) Neocallimastix sp. W-1 cellobiohydrolase C precur... 52 0.067 1 (AC189447) Brassica rapa subsp. pekinensis clone KBrB071H12,... 52 0.067 1 (AJ849710) Ceratosolen bisulcatus microsatellite DNA, clone ... 52 0.067 1 (AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 52 0.067 1 (AC135030) Rattus norvegicus clone CH230-341G8, *** SEQUENCI... 52 0.067 1 (AC132512) Rattus norvegicus clone CH230-281P12, WORKING DRA... 52 0.067 1 (AC130039) Rattus norvegicus clone CH230-340L18, *** SEQUENC... 52 0.067 1 (AC129281) Rattus norvegicus clone CH230-6P16, *** SEQUENCIN... 52 0.067 1 (AC127394) Rattus norvegicus clone CH230-300L18, WORKING DRA... 52 0.067 1 (AC125954) Rattus norvegicus clone CH230-31G19, *** SEQUENCI... 52 0.067 1 (AC114445) Rattus norvegicus clone CH230-279I23, *** SEQUENC... 52 0.067 1 (AC113751) Rattus norvegicus clone CH230-187E10, *** SEQUENC... 52 0.067 1 (AC112374) Rattus norvegicus clone CH230-241G3, *** SEQUENCI... 52 0.067 1 (AC112014) Rattus norvegicus clone CH230-339G17, *** SEQUENC... 52 0.067 1 (AC108613) Rattus norvegicus clone CH230-292H7, *** SEQUENCI... 52 0.067 1 (AC105149) Rattus norvegicus clone CH230-83F3, WORKING DRAFT... 52 0.067 1 (AC104291) Rattus norvegicus clone CH230-132I24, *** SEQUENC... 52 0.067 1 (AC103187) Rattus norvegicus clone CH230-108E1, *** SEQUENCI... 52 0.067 1 (AC096142) Rattus norvegicus clone CH230-10P2, *** SEQUENCIN... 52 0.067 1 (AC096019) Rattus norvegicus clone CH230-35N12, WORKING DRAF... 52 0.067 1 (CU633647) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.067 1 (CU582779) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.067 1 (FI015622) CHO_OF6918xn04f1.ab1 CHO_OF6 Nicotiana tabacum ge... 52 0.067 1 (FI015505) CHO_OF6918xn05f1.ab1 CHO_OF6 Nicotiana tabacum ge... 52 0.067 1 (FH945998) CHO_OF6743xf12f1.ab1 CHO_OF6 Nicotiana tabacum ge... 52 0.067 1 (FH471139) CHO_OF4330xh19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 52 0.067 1 (FH160670) CHO_OF3158xd14r1.ab1 CHO_OF3 Nicotiana tabacum ge... 52 0.067 1 (BH817662) BACPP1-J20.y Pristionchus pacificus BAC ends Pris... 52 0.067 1 (ES271157) JKBNM5_T7_004_G06_29JUN2004_036 JKBNM5 Brassica n... 52 0.067 1 (EE665502) 30083_re417 R. filosa cDNA library Reticulomyxa f... 52 0.067 1 (CT586086) Danio rerio EST, clone ZF_mu_39i05 5'. 52 0.067 1 (BW222003) Ciona intestinalis cDNA, clone:cilv048e02, 5' end... 52 0.067 1 (FM200053) Salmonella enterica subsp. enterica serovar Parat... 52 0.067 1 (CP001138) Salmonella enterica subsp. enterica serovar Agona... 52 0.067 1 (CP000026) Salmonella enterica subsp. enterica serovar Parat... 52 0.067 1 (BY723415) Mus musculus 16 days neonate thymus cDNA, RIKEN f... 44 0.082 2 (FE832840) CCAG44276.g1 CCAG Petrolisthes cinctipes heart, g... 50 0.086 2 (AU071909) Dictyostelium discoideum slug cDNA, clone SSC724. 48 0.12 2 (AF238313) Dictyostelium discoideum developmental protein DG... 44 0.17 3 (AU060791) Dictyostelium discoideum slug cDNA, clone SLB506. 48 0.18 2 (BJ363422) Dictyostelium discoideum cDNA clone:ddc26f14, 5' ... 48 0.18 2 (EL509403) G10_PF-SAU3A-T3-M-P18_D.AB1 Blood stage Plasmodiu... 46 0.22 2 (EL509402) G10_PF-SAU3A-T3-M-P18.AB1 Blood stage Plasmodium ... 46 0.22 2 (CT747884) Paramecium tetraurelia 5-PRIME EST from clone LK0... 48 0.22 2 (BJ370564) Dictyostelium discoideum cDNA clone:ddc54h13, 5' ... 48 0.24 2 (AL380100) Medicago truncatula EST MtBB50D07R1 : T7 end of c... 48 0.26 2 (CR925719) Zebrafish DNA sequence from clone DKEYP-68F4 in l... 50 0.27 1 (CU372906) Mouse DNA sequence from clone DN-226F16 on chromo... 50 0.27 1 (AL672042) Mouse DNA sequence from clone RP23-91P22 on chrom... 50 0.27 1 (AF081558) Mus musculus glial cells missing protein homolog ... 50 0.27 1 (AC165954) Mus musculus BAC clone RP23-450F5 from chromosome... 50 0.27 1 (AC164005) Mus musculus chromosome 1, clone RP24-312J21, com... 50 0.27 1 (AC159211) Mus musculus BAC clone RP23-33F21 from chromosome... 50 0.27 1 (AC157805) Mus musculus chromosome 1, clone RP24-324B17, com... 50 0.27 1 (AC132248) Mus musculus BAC clone RP24-425H24 from chromosom... 50 0.27 1 (AC124226) Mus musculus chromosome 15, clone RP23-94G21, com... 50 0.27 1 (AC123654) Mus musculus chromosome 15, clone RP23-161D16, co... 50 0.27 1 (AC107837) Mus musculus chromosome 1, clone RP23-272H13, com... 50 0.27 1 (AC107681) Mus musculus chromosome 12, clone RP23-380M24, co... 50 0.27 1 (AC107673) Mus musculus chromosome 1, clone RP24-263O21, com... 50 0.27 1 (AC098882) Mus musculus BAC clone RP23-122D13 from 12, compl... 50 0.27 1
>(BJ430841) Dictyostelium discoideum cDNA clone:ddv9b05, 3' end, single read. Length = 704
Score = 688 bits (347), Expect(2) = 0.0 Identities = 347/347 (100%) Strand = Plus / Minus
Query: 534 cacgttcaagatctggttcaagaagaagaaagtctatcgattttagcttattagctgaaa 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 cacgttcaagatctggttcaagaagaagaaagtctatcgattttagcttattagctgaaa 587
Query: 594 gaagagtttatgtaggtcgtatctcaaataaaactacaagagaatctctagaagattctt 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 gaagagtttatgtaggtcgtatctcaaataaaactacaagagaatctctagaagattctt 527
Query: 654 tccttaaatttggtaaagttctatcgtgtgatgttaaaaatggttatgcttttgttgaat 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 tccttaaatttggtaaagttctatcgtgtgatgttaaaaatggttatgcttttgttgaat 467
Query: 714 ttgataatgaaaagagtgcaagagatgccattgaagaaatgcacgattcaattgttgacg 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 ttgataatgaaaagagtgcaagagatgccattgaagaaatgcacgattcaattgttgacg 407
Query: 774 gtgaaaagattcttgtagagaaatcacacagtggtaaaaaacatccagatgaatgtttca 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 gtgaaaagattcttgtagagaaatcacacagtggtaaaaaacatccagatgaatgtttca 347
Query: 834 tttgcagaggtcgtggccattgggctcgtagttgtccaaaaggtgga 880 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 tttgcagaggtcgtggccattgggctcgtagttgtccaaaaggtgga 300
Score = 337 bits (170), Expect(2) = 0.0 Identities = 170/170 (100%) Strand = Plus / Minus
Query: 975 cttgtttcacatgcaatggtgttggtcacattgcaaaggattgtccaaaatcaaacagac 1034 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 cttgtttcacatgcaatggtgttggtcacattgcaaaggattgtccaaaatcaaacagac 146
Query: 1035 gttacaatccatacaacaacaataacaacaataacaatggtagaaatagagatagaagtt 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 gttacaatccatacaacaacaataacaacaataacaatggtagaaatagagatagaagtt 86
Query: 1095 attctcgttcaagatcaagatcaccaagatacagaagcaatggtggaaac 1144 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 attctcgttcaagatcaagatcaccaagatacagaagcaatggtggaaac 36
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 1,033,366,154 Number of extensions: 71193393 Number of successful extensions: 5638502 Number of sequences better than 10.0: 951 Length of query: 1568 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 1544 Effective length of database: 100,704,341,533 Effective search space: 155487503326952 Effective search space used: 155487503326952 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.15 |
Homology vs Protein |
Query= Contig-U15187-1 (Contig-U15187-1Q) /CSM_Contig/Contig-U15187-1Q.Seq.d (1568 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AY846357_1(AY846357|pid:none) Bombyx mori lark-PA (lark) mRNA, c... 79 4e-13 (Q94901) RecName: Full=RNA-binding protein lark; &AE014296_1304... 78 8e-13 BC154222_1(BC154222|pid:none) Danio rerio zgc:85696, mRNA (cDNA ... 74 1e-11 AK060171_1(AK060171|pid:none) Oryza sativa Japonica Group cDNA c... 71 1e-10 EF575728_1(EF575728|pid:none) Oryza sativa (indica cultivar-grou... 71 1e-10 BT087828_1(BT087828|pid:none) Zea mays full-length cDNA clone ZM... 71 1e-10 AC124144_5(AC124144|pid:none) Oryza sativa (japonica cultivar-gr... 70 2e-10 AM468599_1(AM468599|pid:none) Vitis vinifera contig VV78X062299.... 70 2e-10 AK176551_1(AK176551|pid:none) Arabidopsis thaliana mRNA, complet... 69 4e-10 BT074492_1(BT074492|pid:none) Osmerus mordax clone omor-eva-520-... 69 5e-10 BT070075_1(BT070075|pid:none) Zea mays full-length cDNA clone ZM... 68 1e-09 FN320366_1(FN320366|pid:none) Schistosoma japonicum isolate Anhu... 67 2e-09 FN320364_1(FN320364|pid:none) Schistosoma japonicum isolate Anhu... 67 2e-09 FN357373_15(FN357373|pid:none) Schistosoma mansoni genome sequen... 67 2e-09 FN320365_1(FN320365|pid:none) Schistosoma japonicum isolate Anhu... 67 2e-09 FN320367_1(FN320367|pid:none) Schistosoma japonicum isolate Anhu... 67 2e-09 FN357373_14(FN357373|pid:none) Schistosoma mansoni genome sequen... 67 2e-09 BT065117_1(BT065117|pid:none) Zea mays full-length cDNA clone ZM... 67 2e-09 AK176666_1(AK176666|pid:none) Arabidopsis thaliana mRNA, complet... 67 2e-09 (Q8VE97) RecName: Full=Splicing factor, arginine/serine-rich 4; ... 66 3e-09 A48133(A48133) pre-mRNA splicing SRp75 - human &L14076_1(L14076... 66 3e-09 AK291509_1(AK291509|pid:none) Homo sapiens cDNA FLJ76859 complet... 66 3e-09 AK077648_1(AK077648|pid:none) Mus musculus 8 days embryo whole b... 66 3e-09 (Q08170) RecName: Full=Splicing factor, arginine/serine-rich 4; ... 66 3e-09 DQ972965_1(DQ972965|pid:none) Sus scrofa SFRS4 mRNA, complete cds. 66 3e-09 BT062575_1(BT062575|pid:none) Zea mays full-length cDNA clone ZM... 66 4e-09 EU959768_1(EU959768|pid:none) Zea mays clone 219906 splicing fac... 65 5e-09 BC082645_1(BC082645|pid:none) Xenopus laevis hypothetical LOC494... 65 9e-09 AK133872_1(AK133872|pid:none) Mus musculus 8 days embryo whole b... 65 9e-09 BC012039_1(BC012039|pid:none) Mus musculus splicing factor, argi... 65 9e-09 BC087121_1(BC087121|pid:none) Rattus norvegicus splicing factor,... 65 9e-09 AK004831_1(AK004831|pid:none) Mus musculus adult male lung cDNA,... 65 9e-09 BC046668_1(BC046668|pid:none) Xenopus laevis similar to splicing... 64 1e-08 AK341489_1(AK341489|pid:none) Acyrthosiphon pisum ACYPI003349 mR... 64 1e-08 AB170602_1(AB170602|pid:none) Macaca fascicularis brain cDNA clo... 64 1e-08 AK300411_1(AK300411|pid:none) Homo sapiens cDNA FLJ50863 complet... 64 1e-08 DQ972964_1(DQ972964|pid:none) Sus scrofa SFRS6 mRNA, complete cds. 64 1e-08 BC046895_1(BC046895|pid:none) Danio rerio zgc:55809, mRNA (cDNA ... 64 2e-08 BC124192_1(BC124192|pid:none) Danio rerio zgc:55809, mRNA (cDNA ... 64 2e-08 U30829_1(U30829|pid:none) Human splicing factor SRp55-3 (SRp55) ... 63 3e-08 DQ443394_1(DQ443394|pid:none) Bombyx mori arginine/serine-rich s... 63 3e-08 AY303541_1(AY303541|pid:none) Rattus norvegicus zinc responsive ... 63 3e-08 U89506_1(U89506|pid:none) Mus musculus Mlark mRNA, complete cds. 63 3e-08 AC087412_4(AC087412|pid:none) Oryza sativa chromosome 3 BAC OSJN... 63 3e-08 (Q8C7Q4) RecName: Full=RNA-binding protein 4; AltName: Full=RNA-... 63 3e-08 (Q64LC9) RecName: Full=RNA-binding protein 4B; AltName: Full=RNA... 63 3e-08 U30828_1(U30828|pid:none) Human splicing factor SRp55-2 (SRp55) ... 63 3e-08 FN357583_8(FN357583|pid:none) Schistosoma mansoni genome sequenc... 63 3e-08 (Q6IQ97) RecName: Full=RNA-binding protein 4.1; AltName: Full=RN... 62 4e-08 BT081512_1(BT081512|pid:none) Rana catesbeiana clone rcat-evr-51... 62 4e-08 AL935272_3(AL935272|pid:none) Zebrafish DNA sequence from clone ... 62 6e-08 DQ917635_1(DQ917635|pid:none) Sus scrofa RBM4 mRNA, complete cds. 62 8e-08 AF173640_2(AF173640|pid:none) Arabidopsis thaliana splicing fact... 62 8e-08 AF001035_2(AF001035|pid:none) Arabidopsis thaliana ASF/SF2 homol... 62 8e-08 (O22315) RecName: Full=Pre-mRNA-splicing factor SF2; AltName: Fu... 62 8e-08 M98340_1(M98340|pid:none) Arabidopis thaliana ribonucleoprotein ... 62 8e-08 AF173640_5(AF173640|pid:none) Arabidopsis thaliana splicing fact... 62 8e-08 AF173640_1(AF173640|pid:none) Arabidopsis thaliana splicing fact... 62 8e-08 AY128338_1(AY128338|pid:none) Arabidopsis thaliana SF2/ASF-like ... 62 8e-08 AF173640_3(AF173640|pid:none) Arabidopsis thaliana splicing fact... 62 8e-08 FN320327_1(FN320327|pid:none) Schistosoma japonicum isolate Anhu... 61 1e-07 (P78814) RecName: Full=Pre-mRNA-splicing factor srp2; &AF012278... 61 1e-07 FN320324_1(FN320324|pid:none) Schistosoma japonicum isolate Anhu... 61 1e-07 BC046057_1(BC046057|pid:none) Danio rerio RNA binding motif prot... 61 1e-07 BC067187_1(BC067187|pid:none) Danio rerio RNA binding motif prot... 61 1e-07 BC065633_1(BC065633|pid:none) Danio rerio zgc:77262, mRNA (cDNA ... 61 1e-07 BC044503_1(BC044503|pid:none) Danio rerio RNA binding motif prot... 61 1e-07 AC135927_5(AC135927|pid:none) Oryza sativa (japonica cultivar-gr... 60 2e-07 AP008211_951(AP008211|pid:none) Oryza sativa (japonica cultivar-... 60 2e-07 AC135928_11(AC135928|pid:none) Oryza sativa (japonica cultivar-g... 60 2e-07 BC095368_1(BC095368|pid:none) Danio rerio zgc:110682, mRNA (cDNA... 60 3e-07 EU962006_1(EU962006|pid:none) Zea mays clone 239583 unknown mRNA. 60 3e-07 BT043684_1(BT043684|pid:none) Salmo salar clone HM5_1838 hyperos... 59 4e-07 BT057440_1(BT057440|pid:none) Salmo salar clone ssal-evf-569-239... 59 4e-07 BT087787_1(BT087787|pid:none) Zea mays full-length cDNA clone ZM... 59 4e-07 Z66521_7(Z66521|pid:none) Caenorhabditis elegans Cosmid W02B12, ... 59 4e-07 Z66521_6(Z66521|pid:none) Caenorhabditis elegans Cosmid W02B12, ... 59 4e-07 D89163_1(D89163|pid:none) Schizosaccharomyces pombe mRNA, partia... 59 6e-07 BT064695_1(BT064695|pid:none) Zea mays full-length cDNA clone ZM... 59 6e-07 BT050206_1(BT050206|pid:none) Salmo salar clone ssal-evf-501-088... 59 6e-07 AC092557_8(AC092557|pid:none) Oryza sativa chromosome 3 BAC OSJN... 59 6e-07 AF533016_1(AF533016|pid:none) Salmo salar hyperosmotic glycine r... 58 8e-07 AM463653_3(AM463653|pid:none) Vitis vinifera contig VV78X030354.... 58 8e-07 BT057118_1(BT057118|pid:none) Salmo salar clone ssal-rgb2-592-00... 58 8e-07 BC044085_1(BC044085|pid:none) Xenopus laevis similar to splicing... 58 8e-07 BT044019_1(BT044019|pid:none) Salmo salar clone HM5_1035 hyperos... 58 8e-07 BT048518_1(BT048518|pid:none) Salmo salar clone ssal-evf-501-381... 58 8e-07 AC006954_11(AC006954|pid:none) Arabidopsis thaliana chromosome 2... 58 1e-06 BT059420_1(BT059420|pid:none) Salmo salar clone ssal-rgf-539-367... 58 1e-06 DQ648521_1(DQ648521|pid:none) Bombyx mori splicing factor argini... 57 1e-06 AP004384_18(AP004384|pid:none) Oryza sativa Japonica Group genom... 57 1e-06 AY649841_3(AY649841|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 57 2e-06 AC134242_17(AC134242|pid:none) Medicago truncatula clone mth2-10... 57 2e-06 AF036339_1(AF036339|pid:none) Euphorbia esula glycine-rich RNA-b... 57 2e-06 AY649841_2(AY649841|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 57 2e-06 BT055613_1(BT055613|pid:none) Zea mays full-length cDNA clone ZM... 57 2e-06 CR940353_284(CR940353|pid:none) Theileria annulata strain Ankara... 57 2e-06 EU972135_1(EU972135|pid:none) Zea mays clone 375808 splicing fac... 57 2e-06 BC074634_1(BC074634|pid:none) Xenopus tropicalis keratin 5, gene... 57 2e-06 AL844504_170(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 57 2e-06 AK118074_1(AK118074|pid:none) Arabidopsis thaliana At4g02430 mRN... 57 2e-06 AM910992_156(AM910992|pid:none) Plasmodium knowlesi strain H chr... 57 2e-06 CR855564_1(CR855564|pid:none) Xenopus tropicalis finished cDNA, ... 57 2e-06 AF069298_10(AF069298|pid:none) Arabidopsis thaliana BAC T14P8. ... 57 2e-06 AY649842_2(AY649842|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 56 3e-06 BC108786_1(BC108786|pid:none) Xenopus laevis similar to RNA bind... 56 3e-06 BC045210_1(BC045210|pid:none) Xenopus laevis similar to RNA bind... 56 3e-06 BT052550_1(BT052550|pid:none) Medicago truncatula clone MTYFD_FE... 56 3e-06 AM445604_2(AM445604|pid:none) Vitis vinifera contig VV78X206771.... 56 3e-06 (Q5EA36) RecName: Full=RNA-binding protein 14; AltName: Full=RNA... 56 3e-06 AK153230_1(AK153230|pid:none) Mus musculus bone marrow macrophag... 56 3e-06 EU962966_1(EU962966|pid:none) Zea mays clone 246956 splicing fac... 56 3e-06 EF677312_1(EF677312|pid:none) Picea sitchensis clone WS02765_E09... 56 3e-06 S20710(S20710) hypothetical protein, 16K - mouse &X52102_1(X521... 56 3e-06 (Q23120) RecName: Full=Probable splicing factor, arginine/serine... 56 3e-06 BC071160_1(BC071160|pid:none) Xenopus laevis MGC83263 protein, m... 56 3e-06 AJ245939_1(AJ245939|pid:none) Ricinus communis mRNA for glycine-... 56 3e-06 BT060477_1(BT060477|pid:none) Zea mays full-length cDNA clone ZM... 56 3e-06 BT068530_1(BT068530|pid:none) Zea mays full-length cDNA clone ZM... 56 3e-06 (Q8C2Q3) RecName: Full=RNA-binding protein 14; AltName: Full=RNA... 56 3e-06 AF315811_1(AF315811|pid:none) Triticum aestivum RNA-binding prot... 56 4e-06 AK106176_1(AK106176|pid:none) Oryza sativa Japonica Group cDNA c... 56 4e-06 BC061344_1(BC061344|pid:none) Xenopus tropicalis RNA binding mot... 56 4e-06 EF144619_1(EF144619|pid:none) Populus trichocarpa clone WS01116_... 55 5e-06 BT059273_1(BT059273|pid:none) Salmo salar clone ssal-rgf-537-370... 55 5e-06 AK063879_1(AK063879|pid:none) Oryza sativa Japonica Group cDNA c... 55 5e-06 EU968475_1(EU968475|pid:none) Zea mays clone 321216 unknown mRNA. 55 7e-06 AK004928_1(AK004928|pid:none) Mus musculus adult male liver cDNA... 55 7e-06 AF031933_1(AF031933|pid:none) Euphorbia esula glycine-rich RNA-b... 55 7e-06 (P82277) RecName: Full=30S ribosomal protein 2, chloroplastic; A... 55 7e-06 AM422105_1(AM422105|pid:none) Danio rerio partial mRNA for RNA b... 55 7e-06 AF033587_1(AF033587|pid:none) Arabidopsis thaliana SRZ21 mRNA, c... 55 7e-06 EF678296_1(EF678296|pid:none) Picea sitchensis clone WS02913_E10... 55 7e-06 BT001482_1(BT001482|pid:none) Drosophila melanogaster LD22171 fu... 55 9e-06 BC063235_1(BC063235|pid:none) Danio rerio splicing factor, argin... 55 9e-06 BX649404_2(BX649404|pid:none) Zebrafish DNA sequence from clone ... 55 9e-06 AJ720000_1(AJ720000|pid:none) Gallus gallus mRNA for hypothetica... 55 9e-06 BC055238_1(BC055238|pid:none) Danio rerio splicing factor, argin... 55 9e-06 Z54163_1(Z54163|pid:none) C.tentans mRNA for hrp45 protein. 55 9e-06 BT080250_1(BT080250|pid:none) Caligus clemensi clone ccle-evs-50... 55 9e-06 BX649404_1(BX649404|pid:none) Zebrafish DNA sequence from clone ... 55 9e-06 AK073210_1(AK073210|pid:none) Oryza sativa Japonica Group cDNA c... 55 9e-06 EU965056_1(EU965056|pid:none) Zea mays clone 283482 splicing fac... 54 1e-05 AK099033_1(AK099033|pid:none) Oryza sativa Japonica Group cDNA c... 54 1e-05 BT077745_1(BT077745|pid:none) Lepeophtheirus salmonis Pacific fo... 54 1e-05 AP008209_1440(AP008209|pid:none) Oryza sativa (japonica cultivar... 54 1e-05 EU979486_1(EU979486|pid:none) Ornithoctonus huwena clone HWE183 ... 54 1e-05 AL590442_25(AL590442|pid:none) chromosome II of strain GB-M1 of ... 54 1e-05 AF200321_1(AF200321|pid:none) Catharanthus roseus clone C4.7 put... 54 1e-05 AK061903_1(AK061903|pid:none) Oryza sativa Japonica Group cDNA c... 54 1e-05 BC064960_1(BC064960|pid:none) Homo sapiens RNA binding motif pro... 54 2e-05 AK032454_1(AK032454|pid:none) Mus musculus adult male olfactory ... 54 2e-05 CU633447_37(CU633447|pid:none) Podospora anserina genomic DNA ch... 54 2e-05 AL832566_1(AL832566|pid:none) Homo sapiens mRNA; cDNA DKFZp547K0... 54 2e-05 AF315633_1(AF315633|pid:none) Homo sapiens coactivator modulator... 54 2e-05 BX547938_9(BX547938|pid:none) Zebrafish DNA sequence from clone ... 54 2e-05 BX547938_7(BX547938|pid:none) Zebrafish DNA sequence from clone ... 54 2e-05 BC065586_1(BC065586|pid:none) Danio rerio zgc:77155, mRNA (cDNA ... 54 2e-05 AK340903_1(AK340903|pid:none) Acyrthosiphon pisum ACYPI006929 mR... 54 2e-05 CP000592_235(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 54 2e-05 CP001110_1948(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 54 2e-05 BC097250_1(BC097250|pid:none) Danio rerio splicing factor, argin... 54 2e-05 BC077356_1(BC077356|pid:none) Xenopus laevis similar to RNA bind... 54 2e-05 BC133851_1(BC133851|pid:none) Danio rerio splicing factor, argin... 54 2e-05 BX547938_10(BX547938|pid:none) Zebrafish DNA sequence from clone... 54 2e-05 BT074878_1(BT074878|pid:none) Osmerus mordax clone omor-rgc-502-... 54 2e-05 EU087580_1(EU087580|pid:none) Ilyanassa obsoleta RNA-binding 1-l... 54 2e-05 EF082522_1(EF082522|pid:none) Picea sitchensis clone WS0297_G20 ... 53 3e-05 AY050483_1(AY050483|pid:none) Prunus avium putative glycine-rich... 53 3e-05 AC002335_10(AC002335|pid:none) Arabidopsis thaliana chromosome 2... 53 3e-05 BC044458_1(BC044458|pid:none) Danio rerio zgc:55701, mRNA (cDNA ... 53 3e-05 AC134242_12(AC134242|pid:none) Medicago truncatula clone mth2-10... 53 3e-05 BT076436_1(BT076436|pid:none) Caligus rogercresseyi clone crog-e... 53 3e-05 BT075692_1(BT075692|pid:none) Osmerus mordax clone omor-rgc-511-... 53 3e-05 BT075762_1(BT075762|pid:none) Caligus rogercresseyi clone crog-e... 53 3e-05 AL928866_9(AL928866|pid:none) Zebrafish DNA sequence from clone ... 53 4e-05 AC134242_21(AC134242|pid:none) Medicago truncatula clone mth2-10... 53 4e-05 AL032631_3(AL032631|pid:none) Caenorhabditis elegans YAC Y106G6H... 53 4e-05 EU969871_1(EU969871|pid:none) Zea mays clone 336682 glycine-rich... 53 4e-05 BT049983_1(BT049983|pid:none) Salmo salar clone ssal-evd-529-162... 53 4e-05 (Q03251) RecName: Full=Glycine-rich RNA-binding protein 8; AltNa... 53 4e-05 AL032631_5(AL032631|pid:none) Caenorhabditis elegans YAC Y106G6H... 53 4e-05 AK303984_1(AK303984|pid:none) Homo sapiens cDNA FLJ59148 complet... 53 4e-05 FB872176_1(FB872176|pid:none) Sequence 91449 from Patent WO20080... 53 4e-05 BT039258_1(BT039258|pid:none) Zea mays full-length cDNA clone ZM... 53 4e-05 (P10979) RecName: Full=Glycine-rich RNA-binding, abscisic acid-i... 53 4e-05 AC003114_19(AC003114|pid:none) Arabidopsis thaliana chromosome 1... 53 4e-05 FB872162_1(FB872162|pid:none) Sequence 91435 from Patent WO20080... 53 4e-05 EU971223_1(EU971223|pid:none) Zea mays clone 359846 glycine-rich... 53 4e-05 EU972052_1(EU972052|pid:none) Zea mays clone 373925 RNA binding ... 53 4e-05 AM433270_2(AM433270|pid:none) Vitis vinifera contig VV78X203954.... 53 4e-05 BT036700_1(BT036700|pid:none) Zea mays full-length cDNA clone ZM... 53 4e-05 BT050102_1(BT050102|pid:none) Salmo salar clone ssal-eve-504-214... 53 4e-05 EF148377_1(EF148377|pid:none) Populus trichocarpa x Populus delt... 52 5e-05 DQ019630_1(DQ019630|pid:none) Triticum aestivum alternative spli... 52 5e-05 AK103177_1(AK103177|pid:none) Oryza sativa Japonica Group cDNA c... 52 5e-05 (Q9NEW6) RecName: Full=Probable splicing factor, arginine/serine... 52 5e-05 AB023046_18(AB023046|pid:none) Arabidopsis thaliana genomic DNA,... 52 5e-05 (Q5KNY5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 52 5e-05 AM910991_171(AM910991|pid:none) Plasmodium knowlesi strain H chr... 52 5e-05 BT045551_1(BT045551|pid:none) Salmo salar clone ssal-rgf-524-289... 52 5e-05 AF200323_1(AF200323|pid:none) Catharanthus roseus clone C4.26 pu... 52 5e-05 AF310215_1(AF310215|pid:none) Sorghum bicolor glycine-rich RNA-b... 52 5e-05 AY649843_3(AY649843|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 52 5e-05 AY649843_2(AY649843|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 52 5e-05 AF005359_1(AF005359|pid:none) Nicotiana glutinosa RNA-binding pr... 52 6e-05 AL928866_8(AL928866|pid:none) Zebrafish DNA sequence from clone ... 52 6e-05 A40459(A40459;S14620) nuclear phosphoprotein SRp55 - fruit fly (... 52 6e-05 BT083094_1(BT083094|pid:none) Anoplopoma fimbria clone afim-evh-... 52 6e-05 AM447494_2(AM447494|pid:none) Vitis vinifera contig VV78X024983.... 52 6e-05 AJ719775_1(AJ719775|pid:none) Gallus gallus mRNA for hypothetica... 52 6e-05 AB062910_1(AB062910|pid:none) Physcomitrella patens PpGRP2 mRNA ... 52 6e-05 BC097003_1(BC097003|pid:none) Danio rerio splicing factor, argin... 52 6e-05 (Q99070) RecName: Full=Glycine-rich RNA-binding protein 2; &FB8... 52 6e-05 AK007729_1(AK007729|pid:none) Mus musculus 10 day old male pancr... 52 8e-05 AF009003_1(AF009003|pid:none) Pelargonium x hortorum glycine-ric... 52 8e-05 CP001101_100(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 52 8e-05 CR954212_227(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 52 8e-05 AX888078_1(AX888078|pid:none) Sequence 3941 from Patent EP1033401. 52 8e-05 FJ438505_1(FJ438505|pid:none) Epinephelus coioides hyperosmotic ... 52 8e-05 (Q13243) RecName: Full=Splicing factor, arginine/serine-rich 5; ... 52 8e-05 AE014297_1773(AE014297|pid:none) Drosophila melanogaster chromos... 52 8e-05 AK070807_1(AK070807|pid:none) Oryza sativa Japonica Group cDNA c... 52 8e-05 BC079925_1(BC079925|pid:none) Xenopus tropicalis splicing factor... 52 8e-05 AK300560_1(AK300560|pid:none) Homo sapiens cDNA FLJ57437 complet... 52 8e-05 Z81080_2(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 52 8e-05 BC077393_1(BC077393|pid:none) Xenopus laevis MGC81677 protein, m... 52 8e-05 BC146185_1(BC146185|pid:none) Bos taurus splicing factor, argini... 52 8e-05 AE014297_1777(AE014297|pid:none) Drosophila melanogaster chromos... 52 8e-05 (Q8BL97) RecName: Full=Splicing factor, arginine/serine-rich 7; ... 52 8e-05 BT066750_1(BT066750|pid:none) Zea mays full-length cDNA clone ZM... 52 8e-05 EU953346_1(EU953346|pid:none) Zea mays clone 1400990 unknown mRNA. 52 8e-05 BT083071_1(BT083071|pid:none) Anoplopoma fimbria clone afim-evh-... 52 8e-05 BC077185_1(BC077185|pid:none) Xenopus laevis MGC78845 protein, m... 52 8e-05 BT077917_1(BT077917|pid:none) Lepeophtheirus salmonis Pacific fo... 52 8e-05 AB209804_1(AB209804|pid:none) Homo sapiens premature mRNA for CS... 52 8e-05 (Q09167) RecName: Full=Splicing factor, arginine/serine-rich 5; ... 52 8e-05 T22008(T22008;T26011)hypothetical protein F39H2.2 - Caenorhabdit... 52 8e-05 (P49311) RecName: Full=Glycine-rich RNA-binding protein GRP2A; ... 52 8e-05 Z81080_1(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 52 8e-05 CR380954_132(CR380954|pid:none) Candida glabrata strain CBS138 c... 51 1e-04 BC099175_1(BC099175|pid:none) Rattus norvegicus splicing factor,... 51 1e-04 (A5DM21) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 51 1e-04 AK082848_1(AK082848|pid:none) Mus musculus ES cells cDNA, RIKEN ... 51 1e-04 EF148426_1(EF148426|pid:none) Populus trichocarpa x Populus delt... 51 1e-04 BC070967_1(BC070967|pid:none) Xenopus laevis hypothetical protei... 51 1e-04 BC083384_1(BC083384|pid:none) Danio rerio RNA binding protein, a... 51 1e-04 AB207971_1(AB207971|pid:none) Lolium perenne gene for glycine-ri... 51 1e-04 AK137795_1(AK137795|pid:none) Mus musculus 16 days neonate thymu... 51 1e-04 EF619490_1(EF619490|pid:none) Cervus elaphus arginine/serine-ric... 51 1e-04 CQ834656_1(CQ834656|pid:none) Sequence 527 from Patent WO2004058... 51 1e-04 T45890(T45890)splicing factor-like protein - Arabidopsis thaliana 51 1e-04 AE006470_132(AE006470|pid:none) Chlorobium tepidum TLS, complete... 51 1e-04 AK316998_1(AK316998|pid:none) Arabidopsis thaliana AT3G52150 mRN... 51 1e-04 BT030067_1(BT030067|pid:none) Arabidopsis thaliana At3g49430 gen... 51 1e-04 BC027391_1(BC027391|pid:none) Mus musculus splicing factor, argi... 51 1e-04 AK032861_1(AK032861|pid:none) Mus musculus 12 days embryo male w... 51 1e-04 BT080325_1(BT080325|pid:none) Caligus clemensi clone ccle-evs-50... 51 1e-04 BT040220_1(BT040220|pid:none) Zea mays full-length cDNA clone ZM... 51 1e-04 AY892661_1(AY892661|pid:none) Synthetic construct Homo sapiens c... 51 1e-04 AY398405_1(AY398405|pid:none) Danio rerio clone RK063A4C07 autoa... 51 1e-04 (Q16629) RecName: Full=Splicing factor, arginine/serine-rich 7; ... 51 1e-04 EU960438_1(EU960438|pid:none) Zea mays clone 224893 arginine/ser... 51 1e-04 (P38996) RecName: Full=Nuclear polyadenylated RNA-binding protei... 51 1e-04 (Q05966) RecName: Full=Glycine-rich RNA-binding protein 10; &FB... 51 1e-04 BC003283_1(BC003283|pid:none) Mus musculus poly(A) binding prote... 51 1e-04 AL606917_1(AL606917|pid:none) Mouse DNA sequence from clone RP23... 51 1e-04 EU569289_1(EU569289|pid:none) Nicotiana tabacum glycine-rich RNA... 51 1e-04 T51304(T51304) splicing factor RSp31 [imported] - Arabidopsis th... 51 1e-04 AJ441311_1(AJ441311|pid:none) Rumex obtusifolius mRNA for putati... 51 1e-04 AM910990_30(AM910990|pid:none) Plasmodium knowlesi strain H chro... 51 1e-04 AK135962_1(AK135962|pid:none) Mus musculus in vitro fertilized e... 51 1e-04 AL606917_2(AL606917|pid:none) Mouse DNA sequence from clone RP23... 51 1e-04 AL031668_5(AL031668|pid:none) Human DNA sequence from clone RP1-... 51 1e-04 BT044636_1(BT044636|pid:none) Salmo salar clone ssal-rgf-001-209... 51 1e-04 AY398360_1(AY398360|pid:none) Danio rerio clone RK140A4H11 heter... 51 1e-04 D37935_1(D37935|pid:none) Yeast DNA for RNA binding protein, com... 51 1e-04 BC071591_1(BC071591|pid:none) Homo sapiens poly(A) binding prote... 51 1e-04 AL606917_4(AL606917|pid:none) Mouse DNA sequence from clone RP23... 51 1e-04 L38696_1(L38696|pid:none) Homo sapiens autoantigen p542 mRNA, co... 51 1e-04 AL365277_14(AL365277|pid:none) Human DNA sequence from clone RP1... 51 1e-04 (Q13310) RecName: Full=Polyadenylate-binding protein 4; ... 51 1e-04 (P92964) RecName: Full=Arginine/serine-rich-splicing factor RSP3... 51 1e-04 CP000492_1229(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 51 1e-04 (Q9UKM9) RecName: Full=RNA-binding protein Raly; AltName: Full=h... 51 1e-04 AF020683_1(AF020683|pid:none) Rattus norvegicus RNA binding prot... 51 1e-04 AK222915_1(AK222915|pid:none) Homo sapiens mRNA for RNA binding ... 51 1e-04 AJ002763_1(AJ002763|pid:none) Chironomus tentans mRNA for P23 pr... 51 1e-04 AK243636_1(AK243636|pid:none) Oryza sativa Japonica Group cDNA, ... 50 2e-04 BT080536_1(BT080536|pid:none) Caligus clemensi clone ccle-evs-51... 50 2e-04 AJ002893_1(AJ002893|pid:none) Oryza sativa mRNA for glycine-rich... 50 2e-04 AP008209_2228(AP008209|pid:none) Oryza sativa (japonica cultivar... 50 2e-04 AJ719404_1(AJ719404|pid:none) Gallus gallus mRNA for hypothetica... 50 2e-04 A96762(A96762) probable RNA-binding glycine-rich protein T9L24.4... 50 2e-04 CP000127_2662(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 50 2e-04 AE013599_4123(AE013599|pid:none) Drosophila melanogaster chromos... 50 2e-04 AB451374_1(AB451374|pid:none) Homo sapiens SFRS5 mRNA for splici... 50 2e-04 CP000096_993(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 50 2e-04 CR940347_278(CR940347|pid:none) Theileria annulata strain Ankara... 50 2e-04 BT045197_1(BT045197|pid:none) Salmo salar clone ssal-rgf-514-254... 50 2e-04 CP000492_2580(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 50 2e-04 S71779(S71779) glycine-rich RNA-binding protein GRP1 - wheat &U... 50 2e-04 BX538350_45(BX538350|pid:none) Cryptosporidium parvum chromosome... 50 2e-04 BT074603_1(BT074603|pid:none) Osmerus mordax clone omor-rgc-514-... 50 2e-04 BT073963_1(BT073963|pid:none) Oncorhynchus mykiss clone omyk-evo... 50 2e-04 BT049685_1(BT049685|pid:none) Salmo salar clone ssal-rgb2-559-08... 50 2e-04 CR382125_834(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 50 2e-04 AC120985_5(AC120985|pid:none) Oryza sativa (japonica cultivar-gr... 50 2e-04 AF411956_7(AF411956|pid:none) Takifugu rubripes lck gene locus, ... 50 3e-04 FB912265_1(FB912265|pid:none) Sequence 131538 from Patent WO2008... 50 3e-04 BT045925_1(BT045925|pid:none) Salmo salar clone ssal-rgf-536-322... 50 3e-04 BC053126_1(BC053126|pid:none) Danio rerio poly(A) binding protei... 50 3e-04 AE016819_164(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 50 3e-04 (P19600) RecName: Full=Heterogeneous nuclear ribonucleoprotein C... 50 3e-04 FB912181_1(FB912181|pid:none) Sequence 131454 from Patent WO2008... 50 3e-04 CP000361_59(CP000361|pid:none) Arcobacter butzleri RM4018, compl... 50 3e-04 (P0C196) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 50 3e-04 DQ241855_1(DQ241855|pid:none) Solanum tuberosum clone 002F03 put... 50 3e-04 BT045946_1(BT045946|pid:none) Salmo salar clone ssal-rgf-537-144... 49 4e-04 (P29341) RecName: Full=Polyadenylate-binding protein 1; ... 49 4e-04 FB912257_1(FB912257|pid:none) Sequence 131530 from Patent WO2008... 49 4e-04 BC059662_1(BC059662|pid:none) Danio rerio poly A binding protein... 49 4e-04 FB872108_1(FB872108|pid:none) Sequence 91381 from Patent WO20080... 49 4e-04 AP007151_1217(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 49 4e-04 CR940347_15(CR940347|pid:none) Theileria annulata strain Ankara ... 49 4e-04 (Q5R8F7) RecName: Full=Polyadenylate-binding protein 1; ... 49 4e-04 CP001110_1298(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 49 4e-04 AB085214_1(AB085214|pid:none) Hyla japonica cirp-beta mRNA for c... 49 4e-04 S52491(S52491) polyadenylate binding protein II - human &Z48501... 49 4e-04 AJ302060_1(AJ302060|pid:none) Oryza sativa mRNA for glycine rich... 49 4e-04 BT021068_1(BT021068|pid:none) Bos taurus RNA binding protein (au... 49 4e-04 BX294151_174(BX294151|pid:none) Rhodopirellula baltica SH 1 comp... 49 4e-04 AL031668_6(AL031668|pid:none) Human DNA sequence from clone RP1-... 49 4e-04 (P11940) RecName: Full=Polyadenylate-binding protein 1; ... 49 4e-04 FN317170_1(FN317170|pid:none) Schistosoma japonicum isolate Anhu... 49 4e-04 AJ719881_1(AJ719881|pid:none) Gallus gallus mRNA for hypothetica... 49 4e-04 S54255(S54255) probable glycine rich RNA binding protein - potat... 49 4e-04 (Q9ZQA8) RecName: Full=Probable polyadenylate-binding protein At... 49 4e-04 FM992688_313(FM992688|pid:none) Candida dubliniensis CD36 chromo... 49 4e-04 FN357468_3(FN357468|pid:none) Schistosoma mansoni genome sequenc... 49 4e-04 (O77768) RecName: Full=Heterogeneous nuclear ribonucleoprotein C... 49 4e-04 AK153053_1(AK153053|pid:none) Mus musculus bone marrow macrophag... 49 4e-04 (Q9EPH8) RecName: Full=Polyadenylate-binding protein 1; ... 49 4e-04 AF011331_1(AF011331|pid:none) Oryza sativa glycine-rich protein ... 49 4e-04 BT025704_1(BT025704|pid:none) Arabidopsis thaliana At2g27330 mRN... 49 4e-04 AK088678_1(AK088678|pid:none) Mus musculus 2 days neonate thymus... 49 4e-04 AY893128_1(AY893128|pid:none) Synthetic construct Homo sapiens c... 49 5e-04 AB209558_1(AB209558|pid:none) Homo sapiens mRNA for splicing fac... 49 5e-04 CP000081_411(CP000081|pid:none) Leishmania major chromosome 35, ... 49 5e-04 AL929024_5(AL929024|pid:none) Mouse DNA sequence from clone RP23... 49 5e-04 (Q10667) RecName: Full=RNA-binding protein rnp-1; &T28063(T2806... 49 5e-04 AK131715_1(AK131715|pid:none) Mus musculus adult male testis cDN... 49 5e-04 B40040(B40040) alternative splicing factor ASF-2 - human &M7270... 49 5e-04 AL627248_7(AL627248|pid:none) Zebrafish DNA sequence from clone ... 49 5e-04 AK018176_1(AK018176|pid:none) Mus musculus adult male medulla ob... 49 5e-04 BC087074_1(BC087074|pid:none) Rattus norvegicus RNA binding prot... 49 5e-04 DQ200373_1(DQ200373|pid:none) Solanum tuberosum clone 059F05 pre... 49 5e-04 (P04147) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 49 5e-04 BC128931_1(BC128931|pid:none) Xenopus laevis similar to splicing... 49 5e-04 BC171863_1(BC171863|pid:none) Homo sapiens heterogeneous nuclear... 49 5e-04 AL627248_4(AL627248|pid:none) Zebrafish DNA sequence from clone ... 49 5e-04 AL929024_6(AL929024|pid:none) Mouse DNA sequence from clone RP23... 49 5e-04 BC153596_1(BC153596|pid:none) Danio rerio splicing factor, argin... 49 5e-04 BC123122_1(BC123122|pid:none) Xenopus laevis similar to splicing... 49 5e-04 BC144551_1(BC144551|pid:none) Homo sapiens heterogeneous nuclear... 49 5e-04 BC051134_1(BC051134|pid:none) Mus musculus poly(A) binding prote... 49 5e-04 (Q7SXP4) RecName: Full=Splicing factor, arginine/serine-rich 1-l... 49 5e-04 AK304470_1(AK304470|pid:none) Homo sapiens cDNA FLJ52850 complet... 49 5e-04 BC004851_1(BC004851|pid:none) Mus musculus hnRNP-associated with... 49 5e-04 CR940352_492(CR940352|pid:none) Theileria annulata strain Ankara... 49 5e-04 (Q5R7H2) RecName: Full=Splicing factor, arginine/serine-rich 1; ... 49 5e-04 AL929024_4(AL929024|pid:none) Mouse DNA sequence from clone RP23... 49 5e-04 (Q5ARI5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 49 5e-04 DQ440228_1(DQ440228|pid:none) Aedes aegypti clone AET-265 polyad... 49 5e-04 AB384975_1(AB384975|pid:none) Synthetic construct DNA, clone: pF... 49 5e-04 (Q5AI15) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 49 5e-04 AK091425_1(AK091425|pid:none) Homo sapiens cDNA FLJ34106 fis, cl... 49 5e-04 (Q6DII2) RecName: Full=Splicing factor, arginine/serine-rich 1; ... 49 5e-04 AL929024_2(AL929024|pid:none) Mouse DNA sequence from clone RP23... 49 5e-04 AK078715_1(AK078715|pid:none) Mus musculus adult male eyeball cD... 49 5e-04 (O60812) RecName: Full=Heterogeneous nuclear ribonucleoprotein C... 49 5e-04 BC095586_1(BC095586|pid:none) Danio rerio splicing factor, argin... 49 7e-04 AL049711_26(AL049711|pid:none) Arabidopsis thaliana DNA chromoso... 49 7e-04 BC056752_1(BC056752|pid:none) Danio rerio splicing factor, argin... 49 7e-04 AM502227_10(AM502227|pid:none) Leishmania infantum chromosome 9. 49 7e-04 CR382131_452(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 49 7e-04 AC136449_14(AC136449|pid:none) Medicago truncatula clone mth2-11... 49 7e-04 BT058737_1(BT058737|pid:none) Salmo salar clone ssal-rgf-002-150... 49 7e-04 (A1D4K4) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 49 7e-04 DQ534196_1(DQ534196|pid:none) Bombyx mori bmp-2 mRNA, complete c... 49 7e-04 DQ788634_1(DQ788634|pid:none) Squalus acanthias putative polyade... 49 7e-04 (A5DW14) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 49 7e-04 FJ356060_1(FJ356060|pid:none) Chorispora bungeana putative glyci... 49 7e-04 BC099992_1(BC099992|pid:none) Danio rerio poly A binding protein... 49 7e-04 AK289933_1(AK289933|pid:none) Homo sapiens cDNA FLJ77645 complet... 49 7e-04 BT070029_1(BT070029|pid:none) Zea mays full-length cDNA clone ZM... 48 9e-04 AE014186_186(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 48 9e-04 (Q9H361) RecName: Full=Polyadenylate-binding protein 3; ... 48 9e-04 DQ019626_1(DQ019626|pid:none) Triticum aestivum pre-mRNA process... 48 9e-04 AK312382_1(AK312382|pid:none) Homo sapiens cDNA, FLJ92712, highl... 48 9e-04 AK011336_1(AK011336|pid:none) Mus musculus 10 days embryo whole ... 48 9e-04 X57483_1(X57483|pid:none) X.laevis variant mRNA (X ABP 12-5) for... 48 9e-04 AK302213_1(AK302213|pid:none) Homo sapiens cDNA FLJ53542 complet... 48 9e-04 AF009411_1(AF009411|pid:none) Oryza sativa glycine-rich RNA-bind... 48 9e-04 AK019958_1(AK019958|pid:none) Mus musculus 8 days embryo whole b... 48 9e-04 AP003622_9(AP003622|pid:none) Oryza sativa Japonica Group genomi... 48 9e-04 DQ120640_1(DQ120640|pid:none) Homo sapiens PABP3 gene, partial c... 48 9e-04 AK312338_1(AK312338|pid:none) Homo sapiens cDNA, FLJ92657, highl... 48 9e-04 BC089438_1(BC089438|pid:none) Homo sapiens heterogeneous nuclear... 48 9e-04 DNXLPA(A32323;S12000) polyadenylate-binding protein - African cl... 48 9e-04 AB209527_1(AB209527|pid:none) Homo sapiens mRNA for Heterogeneou... 48 9e-04 AL136900_1(AL136900|pid:none) Homo sapiens mRNA; cDNA DKFZp434M1... 48 9e-04 BT048159_1(BT048159|pid:none) Salmo salar clone ssal-plnb-025-05... 48 9e-04 DQ215534_1(DQ215534|pid:none) Taeniopygia guttata clone 0063P001... 48 9e-04 AY616024_1(AY616024|pid:none) Zea mays arginine/serine-rich spli... 48 9e-04 AB044535_1(AB044535|pid:none) Xenopus laevis xCIRP2 mRNA for col... 48 9e-04 AK297482_1(AK297482|pid:none) Homo sapiens cDNA FLJ52993 complet... 48 9e-04 BC008423_1(BC008423|pid:none) Homo sapiens heterogeneous nuclear... 48 9e-04 (Q5RA82) RecName: Full=Heterogeneous nuclear ribonucleoproteins ... 48 9e-04 FN357605_9(FN357605|pid:none) Schistosoma mansoni genome sequenc... 48 9e-04 BC076931_1(BC076931|pid:none) Xenopus tropicalis polyadenylate-b... 48 9e-04 AF132026_1(AF132026|pid:none) Homo sapiens testis-specific poly(... 48 9e-04 CQ834838_1(CQ834838|pid:none) Sequence 709 from Patent WO2004058... 48 9e-04 BC008364_1(BC008364|pid:none) Homo sapiens heterogeneous nuclear... 48 9e-04 FJ502080_1(FJ502080|pid:none) Aristichthys nobilis clone B26 pol... 48 9e-04 AX972325_1(AX972325|pid:none) Sequence 3128 from Patent EP1104808. 48 0.001 CP000881_32(CP000881|pid:none) Hemiselmis andersenii chromosome ... 48 0.001 BC065953_1(BC065953|pid:none) Danio rerio RNA binding protein S1... 48 0.001 BC057251_1(BC057251|pid:none) Danio rerio RNA binding protein S1... 48 0.001 AK078158_1(AK078158|pid:none) Mus musculus adult male medulla ob... 48 0.001 BT076132_1(BT076132|pid:none) Caligus rogercresseyi clone crog-e... 48 0.001 CP001099_86(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, c... 48 0.001 AK095026_1(AK095026|pid:none) Homo sapiens cDNA FLJ37707 fis, cl... 48 0.001 AK034845_1(AK034845|pid:none) Mus musculus 12 days embryo embryo... 48 0.001 BC050079_1(BC050079|pid:none) Mus musculus synaptotagmin binding... 48 0.001 AB035725_1(AB035725|pid:none) Mus musculus SYNCRIP mRNA, complet... 48 0.001 AK162448_1(AK162448|pid:none) Mus musculus 12 days embryo embryo... 48 0.001 AK032086_1(AK032086|pid:none) Mus musculus adult male medulla ob... 48 0.001 BT077560_1(BT077560|pid:none) Lepeophtheirus salmonis Pacific fo... 48 0.001 (Q7TP47) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 48 0.001 AM445871_1(AM445871|pid:none) Vitis vinifera contig VV78X219207.... 48 0.001 AK089747_1(AK089747|pid:none) Mus musculus activated spleen cDNA... 48 0.001 (Q91ZR0) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 48 0.001 AX405935_1(AX405935|pid:none) Sequence 350 from Patent WO0222660. 48 0.001 FN392322_179(FN392322|pid:none) Pichia pastoris GS115 chromosome... 47 0.001 BT035887_1(BT035887|pid:none) Zea mays full-length cDNA clone ZM... 47 0.001 (Q4WAQ9) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 47 0.001 AF190655_1(AF190655|pid:none) Nicotiana tabacum poly(A)-binding ... 47 0.001 BT077056_1(BT077056|pid:none) Caligus rogercresseyi clone crog-e... 47 0.001 AK017370_1(AK017370|pid:none) Mus musculus 6 days neonate head c... 47 0.001 (Q24491) RecName: Full=RNA-binding protein Rsf1; AltName: Full=R... 47 0.001 AK092069_1(AK092069|pid:none) Homo sapiens cDNA FLJ34750 fis, cl... 47 0.001 U80455_2(U80455|pid:none) Caenorhabditis elegans cosmid T01D1, c... 47 0.001 EF523766_1(EF523766|pid:none) Caenorhabditis elegans ELAV-type R... 47 0.001 BT077137_1(BT077137|pid:none) Caligus rogercresseyi clone crog-e... 47 0.001 BT059149_1(BT059149|pid:none) Salmo salar clone ssal-rgf-528-152... 47 0.001 (P21187) RecName: Full=Polyadenylate-binding protein; S... 47 0.001 AX887360_1(AX887360|pid:none) Sequence 3223 from Patent EP1033401. 47 0.001 AK012371_1(AK012371|pid:none) Mus musculus 11 days embryo whole ... 47 0.001 CP001032_940(CP001032|pid:none) Opitutus terrae PB90-1, complete... 47 0.001 CU928179_343(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 47 0.001 (P31209) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 47 0.001 AY738476_1(AY738476|pid:none) Gemmata sp. Wa1-1 unknown gene. 47 0.001 AY223403_1(AY223403|pid:none) Schistosoma japonicum clone ZZZ332... 47 0.001 CP001071_952(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 47 0.001 AK051575_1(AK051575|pid:none) Mus musculus 12 days embryo spinal... 47 0.001 (Q5JQF8) RecName: Full=Polyadenylate-binding protein 1-like 2; A... 47 0.001 CR940347_358(CR940347|pid:none) Theileria annulata strain Ankara... 47 0.001 AL732567_9(AL732567|pid:none) Zebrafish DNA sequence from clone ... 47 0.001 EF523768_1(EF523768|pid:none) Caenorhabditis elegans ELAV-type R... 47 0.001 M64603_1(M64603|pid:none) Schizosaccharomyces pombe poly(A)-bind... 47 0.001 EU970526_1(EU970526|pid:none) Zea mays clone 346915 pre-mRNA-spl... 47 0.001 BC064134_1(BC064134|pid:none) Homo sapiens peptidylprolyl isomer... 47 0.001 AY398433_1(AY398433|pid:none) Danio rerio clone RK138A3D02 splic... 47 0.001 U80455_3(U80455|pid:none) Caenorhabditis elegans cosmid T01D1, c... 47 0.001 (Q8WUA2) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 47 0.001 CU062631_4(CU062631|pid:none) Zebrafish DNA sequence from clone ... 47 0.001 AK167258_1(AK167258|pid:none) Mus musculus blastocyst blastocyst... 47 0.001 DQ126684_1(DQ126684|pid:none) Gallus gallus aggrecan promoter bi... 47 0.002 AY506544_1(AY506544|pid:none) Lycopersicon esculentum DNA-bindin... 47 0.002 U41007_9(U41007|pid:none) Caenorhabditis elegans cosmid C33H5, c... 47 0.002 L05109_1(L05109|pid:none) Drosophila melanogaster poly(A)-bindin... 47 0.002 BC167357_1(BC167357|pid:none) Xenopus tropicalis peptidylprolyl ... 47 0.002 AK014406_1(AK014406|pid:none) Mus musculus 12 days embryo embryo... 47 0.002 AJ388517_1(AJ388517|pid:none) Canis familiaris mRNA for partial ... 47 0.002 CP001100_1585(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 47 0.002 AK152411_1(AK152411|pid:none) Mus musculus bone marrow macrophag... 47 0.002 DQ215543_1(DQ215543|pid:none) Taeniopygia guttata clone 0058P006... 47 0.002 (Q14011) RecName: Full=Cold-inducible RNA-binding protein; AltNa... 47 0.002 AJ719636_1(AJ719636|pid:none) Gallus gallus mRNA for hypothetica... 47 0.002 AB171494_1(AB171494|pid:none) Macaca fascicularis brain cDNA clo... 47 0.002 BC102773_1(BC102773|pid:none) Bos taurus cold inducible RNA bind... 47 0.002 BC070649_1(BC070649|pid:none) Xenopus laevis hypothetical protei... 47 0.002 AB306286_1(AB306286|pid:none) Alligator mississippiensis CIRBP m... 47 0.002 AY398370_1(AY398370|pid:none) Danio rerio clone RK105A4F05 poly(... 47 0.002 AY394938_1(AY394938|pid:none) Danio rerio clone RK045A2G06 RNA b... 47 0.002 BC157792_1(BC157792|pid:none) Xenopus tropicalis hypothetical pr... 47 0.002 CP000108_1527(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 47 0.002 AK009895_1(AK009895|pid:none) Mus musculus adult male tongue cDN... 47 0.002 (Q1DXH0) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 47 0.002
>AY846357_1(AY846357|pid:none) Bombyx mori lark-PA (lark) mRNA, complete cds, alternatively spliced. Length = 343
Score = 79.3 bits (194), Expect = 4e-13 Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 6/99 (6%) Frame = +2
Query: 596 RVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDG 775 +++VG +++KT + + F KFG V+ CD+ Y FV D DAI+E++ +VDG Sbjct: 87 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDG 146
Query: 776 EKILVEKSHS------GKKHPDECFICRGRGHWARSCPK 874 + + V+ S S G P++C+ C GHW++ CPK Sbjct: 147 QPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPK 185
Score = 63.2 bits (152), Expect = 3e-08 Identities = 26/72 (36%), Positives = 45/72 (62%) Frame = +2
Query: 596 RVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDG 775 ++++G +S+KTT L F K+G V+ CD+ Y FV +NE+ R+AI+ ++ +V G Sbjct: 8 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 67
Query: 776 EKILVEKSHSGK 811 + I +E + S K Sbjct: 68 QAIKIEAAKSRK 79
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 989,873,035 Number of extensions: 12160487 Number of successful extensions: 58732 Number of sequences better than 10.0: 2145 Number of HSP's gapped: 57807 Number of HSP's successfully gapped: 2665 Length of query: 522 Length of database: 1,051,180,864 Length adjustment: 133 Effective length of query: 389 Effective length of database: 620,718,517 Effective search space: 241459503113 Effective search space used: 241459503113 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
4 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
0 |