Contig-U15187-1
Contig ID Contig-U15187-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15187-1 (Contig-U15187-1Q) /CSM_Contig/Contig-U15187-1Q.Seq.d
AATATTTTTTGTACTACTATTATTATTAATTTTTTTTTTTATTTTAAAAA
AAAGAAACGATAATAATAATATGGATCAAAGAGATAGTAGATCTCCATCT
CGTTCACCAGGTGACGATAATAAAAAAGATATAGATAGTAAAAATAATGG
TGGTGCTGTAAATAACAACTCAAATGGCAGCAATACTAATAATGGTAATT
CAGCAACAAATGCTAACAATGATATAGTTATGAAGGATGAAAGTAATAGT
AATAACAATAATAATAATAATAGTAATACCAGTAACAATGGTACAAATAG
TAATAATAATAGTAATAACAACAATAATAATAATCGTGATAATAGTAGAT
CACCTTCACCAAGAGGTAGAAGAGGTGACTCTAAAGAACGTTCAAAGAGT
AGAGATAGAAACGATAGAGATAGAGATAGGAGTAGAGATAGAAACGACAG
AGATAGAGATAGACATGATAGAGATAGAAGTAGAGATAGATATGATAGAC
ATGACAGAAGCAGAGAAAGAAATAGAAGTAGAACACGTTCAAGATCTGGT
TCAAGAAGAAGAAAGTCTATCGATTTTAGCTTATTAGCTGAAAGAAGAGT
TTATGTAGGTCGTATCTCAAATAAAACTACAAGAGAATCTCTAGAAGATT
CTTTCCTTAAATTTGGTAAAGTTCTATCGTGTGATGTTAAAAATGGTTAT
GCTTTTGTTGAATTTGATAATGAAAAGAGTGCAAGAGATGCCATTGAAGA
AATGCACGATTCAATTGTTGACGGTGAAAAGATTCTTGTAGAGAAATCAC
ACAGTGGTAAAAAACATCCAGATGAATGTTTCATTTGCAGAGGTCGTGGC
CATTGGGCTCGTAGTTGTCCAAAAGGTGGAAGAGGTAGAGATGGTAGAGA
TAGAGATTATAGAGATAATAGAGACAGAGATAGGGATAGAGAAAGAGAAA
GAGAAGGTCATTTAAGAAACAGAACTTGTTTCACATGCAATGGTGTTGGT
CACATTGCAAAGGATTGTCCAAAATCAAACAGACGTTACAATCCATACAA
CAACAATAACAACAATAACAATGGTAGAAATAGAGATAGAAGTTATTCTC
GTTCAAGATCAAGATCACCAAGATACAGAAGCAATGGTGGAAACAGATAT
AGAGATAGAAGTAGAGATAGAAGTAGAGATAGAAGTGGTGATAGAAGAGG
TGGAAGTGACAGAAGAAGTGGTAGAGATAGAAGTACCGAAAGAAGAAGAG
AAAGAAGTAAATCAAATGAAAGAAGAAGAGAAAGAGAAGGTAACAATAGT
CCACGTTAAATTGATTTTACCTTTGATTACTCTTTATTGAAAAATAAATA
ACAAAAAACCAAAAACAATAACTCTCCCAATTTATCTCTTATCAATTCTC
TCAATCATCTCTCTCTCTTTCAACATAATAAATAATAATAATAATAATAA
TAATAACCTTTTTTTAATCCACATTATTTAATTTTCCTCATCAATTATTT
TTTATTCCCTACATTAAAATATAAAAATATAAATAAAATTAAAACAAATA
AATTAATAAATAAATAAA

Gap no gap
Contig length 1568
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 6
Number of EST 11
Link to clone list U15187
List of clone(s)

est1=VFF885F,1,544
est2=VFE317E,3,1179
est3=VSF858F,17,553
est4=VFG548F,47,543
est5=VFB441F,106,508
est6=FC-BG08F,462,1111
est7=VFF885Z,555,1256
est8=VFB441Z,659,1307
est9=VSF858Z,876,1252
est10=VFG548Z,879,1561
est11=FC-BG08Z,1101,1568
Translated Amino Acid sequence
IFFVLLLLLIFFFILKKRNDNNNMDQRDSRSPSRSPGDDNKKDIDSKNNGGAVNNNSNGS
NTNNGNSATNANNDIVMKDESNSNNNNNNNSNTSNNGTNSNNNSNNNNNNNRDNSRSPSP
RGRRGDSKERSKSRDRNDRDRDRSRDRNDRDRDRHDRDRSRDRYDRHDRSRERNRSRTRS
RSGSRRRKSIDFSLLAERRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDN
EKSARDAIEEMHDSIVDGEKILVEKSHSGKKHPDECFICRGRGHWARSCPKGGRGRDGRD
RDYRDNRDRDRDREREREGHLRNRTCFTCNGVGHIAKDCPKSNRRYNPYNNNNNNNNGRN
RDRSYSRSRSRSPRYRSNGGNRYRDRSRDRSRDRSGDRRGGSDRRSGRDRSTERRRERSK
SNERRREREGNNSPR*idftfdysllknk*qktknnnspnlslinslnhlslfqhnk***
*****pffnphyliflinyflfptlkykninkiktnklink*


Translated Amino Acid sequence (All Frames)
Frame A:
nifcttiiinfffyfkkkkr***ygskr**isisftr*r**kryr**k*wwcck*qlkwq
qy**w*fsnkc*q*ysyeg*k****q******yq*qwyk*******qq***s****itft
kr*kr*l*rtfke*r*kr*r*r*e*r*krqr*r*t**r*k*r*i**t*qkqrkk*k*ntf
kiwfkkkkvyrf*lis*kkslcrsylk*nykrisrrffp*iw*ssiv*c*kwlcfc*i**
*keckrch*rnarfnc*r*kdscreitqw*ktsr*mfhlqrswplgs*lskrwkr*rw*r
*rl*r**rqr*g*rkrkrrsfkkqnlfhmqwcwshckglskikqtlqsiqqq*qq*qw*k
*r*klfsfkikitkiqkqwwkqi*r*k*r*k*r*kw**krwk*qkkw*r*kyrkkkrkk*
ik*kkkrkrr*q*stln*fyl*llfiek*itknqkq*lsqfisyqfsqsslslst**iii
iiiiitff*stlfnfphqlffipyiki*kyk*n*nk*ink*i


Frame B:
IFFVLLLLLIFFFILKKRNDNNNMDQRDSRSPSRSPGDDNKKDIDSKNNGGAVNNNSNGS
NTNNGNSATNANNDIVMKDESNSNNNNNNNSNTSNNGTNSNNNSNNNNNNNRDNSRSPSP
RGRRGDSKERSKSRDRNDRDRDRSRDRNDRDRDRHDRDRSRDRYDRHDRSRERNRSRTRS
RSGSRRRKSIDFSLLAERRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDN
EKSARDAIEEMHDSIVDGEKILVEKSHSGKKHPDECFICRGRGHWARSCPKGGRGRDGRD
RDYRDNRDRDRDREREREGHLRNRTCFTCNGVGHIAKDCPKSNRRYNPYNNNNNNNNGRN
RDRSYSRSRSRSPRYRSNGGNRYRDRSRDRSRDRSGDRRGGSDRRSGRDRSTERRRERSK
SNERRREREGNNSPR*idftfdysllknk*qktknnnspnlslinslnhlslfqhnk***
*****pffnphyliflinyflfptlkykninkiktnklink*


Frame C:
yflyyyyy*ffflf*kketiiiiwikeivdlhlvhqvtiikki*ivkimvvl*ittqmaa
ilimviqqqmltmi*l*rmkvivitiiiiivipvtmvqiviiivittiiiiviivdhlhq
eveevtlknvqrveietieieigveietteieidmieieveidmidmteaekeievehvq
dlvqeeeslsilay*lkeefm*vvsqiklqenl*kilslnlvkfyrvmlkmvmlllnlim
krvqemplkkctiqlltvkrfl*rnhtvvkniqmnvsfaevvaiglvvvqkveevemvei
eiieiieteigiekekekvi*etelvshamvlvtlqrivqnqtdvtihtttittitmvei
eievilvqdqdhqdteamvetdieieveieveievvieevevteevveievpkeeekevn
qmkeeekekvtivhvklilplitly*kinnkkpktitlpiyllsilsiislsfniinnnn
nnnnnlflihii*fsssiifyslh*niki*iklkqin**ink


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15187-1 (Contig-U15187-1Q)
/CSM_Contig/Contig-U15187-1Q.Seq.d
(1568 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15187-1 (Contig-U15187-1Q) /CSM_Contig/Conti... 700 0.0
Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Conti... 50 1e-05
Contig-U13321-1 (Contig-U13321-1Q) /CSM_Contig/Conti... 50 1e-05
Contig-U15984-1 (Contig-U15984-1Q) /CSM_Contig/Conti... 48 4e-05
Contig-U16351-1 (Contig-U16351-1Q) /CSM_Contig/Conti... 44 7e-04
Contig-U14683-1 (Contig-U14683-1Q) /CSM_Contig/Conti... 44 7e-04
Contig-U09174-1 (Contig-U09174-1Q) /CSM_Contig/Conti... 44 7e-04
Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti... 44 7e-04
Contig-U16295-1 (Contig-U16295-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U16221-1 (Contig-U16221-1Q) /CSM_Contig/Conti... 42 0.003

>Contig-U15187-1 (Contig-U15187-1Q) /CSM_Contig/Contig-U15187-1Q.Seq.d
Length = 1568

Score = 700 bits (353), Expect = 0.0
Identities = 353/353 (100%)
Strand = Plus / Plus


Query: 533 acacgttcaagatctggttcaagaagaagaaagtctatcgattttagcttattagctgaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acacgttcaagatctggttcaagaagaagaaagtctatcgattttagcttattagctgaa 592


Query: 593 agaagagtttatgtaggtcgtatctcaaataaaactacaagagaatctctagaagattct 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agaagagtttatgtaggtcgtatctcaaataaaactacaagagaatctctagaagattct 652


Query: 653 ttccttaaatttggtaaagttctatcgtgtgatgttaaaaatggttatgcttttgttgaa 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttccttaaatttggtaaagttctatcgtgtgatgttaaaaatggttatgcttttgttgaa 712


Query: 713 tttgataatgaaaagagtgcaagagatgccattgaagaaatgcacgattcaattgttgac 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tttgataatgaaaagagtgcaagagatgccattgaagaaatgcacgattcaattgttgac 772


Query: 773 ggtgaaaagattcttgtagagaaatcacacagtggtaaaaaacatccagatgaatgtttc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggtgaaaagattcttgtagagaaatcacacagtggtaaaaaacatccagatgaatgtttc 832


Query: 833 atttgcagaggtcgtggccattgggctcgtagttgtccaaaaggtggaagagg 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 atttgcagaggtcgtggccattgggctcgtagttgtccaaaaggtggaagagg 885


Score = 385 bits (194), Expect = e-106
Identities = 194/194 (100%)
Strand = Plus / Plus


Query: 949 aagagaaggtcatttaagaaacagaacttgtttcacatgcaatggtgttggtcacattgc 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 aagagaaggtcatttaagaaacagaacttgtttcacatgcaatggtgttggtcacattgc 1008


Query: 1009 aaaggattgtccaaaatcaaacagacgttacaatccatacaacaacaataacaacaataa 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 aaaggattgtccaaaatcaaacagacgttacaatccatacaacaacaataacaacaataa 1068


Query: 1069 caatggtagaaatagagatagaagttattctcgttcaagatcaagatcaccaagatacag 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 caatggtagaaatagagatagaagttattctcgttcaagatcaagatcaccaagatacag 1128


Query: 1129 aagcaatggtggaa 1142
||||||||||||||
Sbjct: 1129 aagcaatggtggaa 1142


Score = 373 bits (188), Expect = e-103
Identities = 188/188 (100%)
Strand = Plus / Plus


Query: 54 gaaacgataataataatatggatcaaagagatagtagatctccatctcgttcaccaggtg 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 gaaacgataataataatatggatcaaagagatagtagatctccatctcgttcaccaggtg 113


Query: 114 acgataataaaaaagatatagatagtaaaaataatggtggtgctgtaaataacaactcaa 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 acgataataaaaaagatatagatagtaaaaataatggtggtgctgtaaataacaactcaa 173


Query: 174 atggcagcaatactaataatggtaattcagcaacaaatgctaacaatgatatagttatga 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atggcagcaatactaataatggtaattcagcaacaaatgctaacaatgatatagttatga 233


Query: 234 aggatgaa 241
||||||||
Sbjct: 234 aggatgaa 241


Score = 139 bits (70), Expect = 1e-32
Identities = 70/70 (100%)
Strand = Plus / Plus


Query: 335 cgtgataatagtagatcaccttcaccaagaggtagaagaggtgactctaaagaacgttca 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cgtgataatagtagatcaccttcaccaagaggtagaagaggtgactctaaagaacgttca 394


Query: 395 aagagtagag 404
||||||||||
Sbjct: 395 aagagtagag 404


Score = 99.6 bits (50), Expect = 1e-20
Identities = 50/50 (100%)
Strand = Plus / Plus


Query: 1290 gtaacaatagtccacgttaaattgattttacctttgattactctttattg 1339
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 gtaacaatagtccacgttaaattgattttacctttgattactctttattg 1339


Score = 97.6 bits (49), Expect = 5e-20
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 1466 aatccacattatttaattttcctcatcaattattttttattccctacat 1514
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 aatccacattatttaattttcctcatcaattattttttattccctacat 1514


Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 1 aatattttttgtactactattattattaa 29
|||||||||||||||||||||||||||||
Sbjct: 1 aatattttttgtactactattattattaa 29


Score = 30.2 bits (15), Expect = 9.8
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 1075 tagaaatagagatagaagt 1093
||||| |||||||||||||
Sbjct: 1156 tagaagtagagatagaagt 1174


Score = 30.2 bits (15), Expect = 9.8
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 1075 tagaaatagagatagaagt 1093
||||| |||||||||||||
Sbjct: 1168 tagaagtagagatagaagt 1186


>Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Contig-U16034-1Q.Seq.d
Length = 1534

Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1047 acaacaacaataacaacaataacaa 1071
|||||||||||||||||||||||||
Sbjct: 131 acaacaacaataacaacaataacaa 155


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1047 acaacaacaataacaacaataacaa 1071
|||||||||| ||||||||||||||
Sbjct: 122 acaacaacaacaacaacaataacaa 146


Score = 38.2 bits (19), Expect = 0.040
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 1049 aacaacaataacaacaataacaa 1071
||||||||||||||||| |||||
Sbjct: 142 aacaacaataacaacaacaacaa 164


Score = 30.2 bits (15), Expect = 9.8
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 1048 caacaacaataacaacaataaca 1070
||||||||||| |||||| ||||
Sbjct: 261 caacaacaatatcaacaacaaca 283


>Contig-U13321-1 (Contig-U13321-1Q) /CSM_Contig/Contig-U13321-1Q.Seq.d
Length = 740

Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1047 acaacaacaataacaacaataacaa 1071
|||||||||||||||||||||||||
Sbjct: 208 acaacaacaataacaacaataacaa 232


Score = 34.2 bits (17), Expect = 0.63
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1049 aacaacaataacaacaa 1065
|||||||||||||||||
Sbjct: 219 aacaacaataacaacaa 235


Score = 32.2 bits (16), Expect = 2.5
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1052 aacaataacaacaataacaa 1071
||||| ||||||||||||||
Sbjct: 204 aacaacaacaacaataacaa 223


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,443
Number of Sequences: 8402
Number of extensions: 49443
Number of successful extensions: 4875
Number of sequences better than 10.0: 602
length of query: 1568
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1552
effective length of database: 7,941,110
effective search space: 12324602720
effective search space used: 12324602720
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.15
Homology vs DNA
Query= Contig-U15187-1 (Contig-U15187-1Q) /CSM_Contig/Contig-U15187-1Q.Seq.d
(1568 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ430841) Dictyostelium discoideum cDNA clone:ddv9b05, 3' e... 688 0.0 2
(BJ428691) Dictyostelium discoideum cDNA clone:ddv12j22, 3' ... 646 0.0 2
(AU284654) Dictyostelium discoideum gamete cDNA clone:FC-BG0... 353 0.0 4
(BJ429369) Dictyostelium discoideum cDNA clone:ddv3b12, 3' e... 440 0.0 2
(BJ412551) Dictyostelium discoideum cDNA clone:ddv9b05, 5' e... 373 e-137 4
(C90749) Dictyostelium discoideum slug cDNA, clone SSJ105. 373 e-136 6
(BJ410526) Dictyostelium discoideum cDNA clone:ddv12j22, 5' ... 349 e-123 4
(AU265904) Dictyostelium discoideum vegetative cDNA clone:VS... 361 e-122 4
(BJ413169) Dictyostelium discoideum cDNA clone:ddv14o11, 5' ... 373 e-122 3
(AU074563) Dictyostelium discoideum slug cDNA, clone SSL275. 438 e-118 1
(BJ431514) Dictyostelium discoideum cDNA clone:ddv14o11, 3' ... 337 e-109 2
(AU039061) Dictyostelium discoideum slug cDNA, clone SSM334. 392 e-105 2
(AU265905) Dictyostelium discoideum vegetative cDNA clone:VS... 313 1e-80 1
(BJ411166) Dictyostelium discoideum cDNA clone:ddv3b12, 5' e... 226 6e-73 3
(AU284655) Dictyostelium discoideum gamete cDNA clone:FC-BG0... 100 9e-35 2
(CF435475) EST671820 normalized cDNA library of onion Allium... 42 0.004 2
(AC203993) Zea mays chromosome 7 clone CH201-279G21; ZMMBBc0... 56 0.004 1
(CF449952) EST686297 normalized cDNA library of onion Allium... 42 0.014 2
(CF439422) EST675767 normalized cDNA library of onion Allium... 42 0.014 2
(CF435575) EST671920 normalized cDNA library of onion Allium... 42 0.014 2
(AR546880) Sequence 2011 from patent US 6747137. 54 0.017 1
(AY232266) Dictyostelium discoideum putative protein Roco4 (... 54 0.017 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 54 0.017 1
(AC179025) Strongylocentrotus purpuratus clone R3-32M8, WORK... 54 0.017 1
(FH900045) CHO_ONF068xj18f1.ab1 CHO_ONF Nicotiana tabacum ge... 54 0.017 1
(CE230328) tigr-gss-dog-17000333286635 Dog Library Canis lup... 54 0.017 1
(DU102937) JBnY032L02F Brassica napus BAC library JBnY Brass... 52 0.027 2
(AC115768) Mus musculus chromosome 19, clone RP23-107E10, co... 42 0.042 2
(AZ752914) RPCI-24-116C8.TJ RPCI-24 Mus musculus genomic clo... 42 0.054 2
(BX539347) Zebrafish DNA sequence from clone CH211-262E15 in... 52 0.067 1
(BV211532) BARC173 Wheat var Chinese Spring Genomic DNA Trit... 52 0.067 1
(AC126277) Mus musculus BAC clone RP23-161L22 from 12, compl... 52 0.067 1
(U29872) Neocallimastix patriciarum cellobiohydrolase precur... 52 0.067 1
(FJ216422) Neocallimastix patriciarum cellobiohydrolase (cbh... 52 0.067 1
(EU314933) Neocallimastix patriciarum cellobiohydrolase (cbh... 52 0.067 1
(CR382121) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 52 0.067 1
(AY850394) Lycopersicon esculentum cultivar Heinz1706 chromo... 52 0.067 1
(AM478498) Vitis vinifera contig VV78X099558.20, whole genom... 52 0.067 1
(AM440946) Vitis vinifera, whole genome shotgun sequence, co... 52 0.067 1
(AF529295) Neocallimastix sp. W-1 cellobiohydrolase C precur... 52 0.067 1
(AC189447) Brassica rapa subsp. pekinensis clone KBrB071H12,... 52 0.067 1
(AJ849710) Ceratosolen bisulcatus microsatellite DNA, clone ... 52 0.067 1
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 52 0.067 1
(AC135030) Rattus norvegicus clone CH230-341G8, *** SEQUENCI... 52 0.067 1
(AC132512) Rattus norvegicus clone CH230-281P12, WORKING DRA... 52 0.067 1
(AC130039) Rattus norvegicus clone CH230-340L18, *** SEQUENC... 52 0.067 1
(AC129281) Rattus norvegicus clone CH230-6P16, *** SEQUENCIN... 52 0.067 1
(AC127394) Rattus norvegicus clone CH230-300L18, WORKING DRA... 52 0.067 1
(AC125954) Rattus norvegicus clone CH230-31G19, *** SEQUENCI... 52 0.067 1
(AC114445) Rattus norvegicus clone CH230-279I23, *** SEQUENC... 52 0.067 1
(AC113751) Rattus norvegicus clone CH230-187E10, *** SEQUENC... 52 0.067 1
(AC112374) Rattus norvegicus clone CH230-241G3, *** SEQUENCI... 52 0.067 1
(AC112014) Rattus norvegicus clone CH230-339G17, *** SEQUENC... 52 0.067 1
(AC108613) Rattus norvegicus clone CH230-292H7, *** SEQUENCI... 52 0.067 1
(AC105149) Rattus norvegicus clone CH230-83F3, WORKING DRAFT... 52 0.067 1
(AC104291) Rattus norvegicus clone CH230-132I24, *** SEQUENC... 52 0.067 1
(AC103187) Rattus norvegicus clone CH230-108E1, *** SEQUENCI... 52 0.067 1
(AC096142) Rattus norvegicus clone CH230-10P2, *** SEQUENCIN... 52 0.067 1
(AC096019) Rattus norvegicus clone CH230-35N12, WORKING DRAF... 52 0.067 1
(CU633647) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.067 1
(CU582779) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.067 1
(FI015622) CHO_OF6918xn04f1.ab1 CHO_OF6 Nicotiana tabacum ge... 52 0.067 1
(FI015505) CHO_OF6918xn05f1.ab1 CHO_OF6 Nicotiana tabacum ge... 52 0.067 1
(FH945998) CHO_OF6743xf12f1.ab1 CHO_OF6 Nicotiana tabacum ge... 52 0.067 1
(FH471139) CHO_OF4330xh19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 52 0.067 1
(FH160670) CHO_OF3158xd14r1.ab1 CHO_OF3 Nicotiana tabacum ge... 52 0.067 1
(BH817662) BACPP1-J20.y Pristionchus pacificus BAC ends Pris... 52 0.067 1
(ES271157) JKBNM5_T7_004_G06_29JUN2004_036 JKBNM5 Brassica n... 52 0.067 1
(EE665502) 30083_re417 R. filosa cDNA library Reticulomyxa f... 52 0.067 1
(CT586086) Danio rerio EST, clone ZF_mu_39i05 5'. 52 0.067 1
(BW222003) Ciona intestinalis cDNA, clone:cilv048e02, 5' end... 52 0.067 1
(FM200053) Salmonella enterica subsp. enterica serovar Parat... 52 0.067 1
(CP001138) Salmonella enterica subsp. enterica serovar Agona... 52 0.067 1
(CP000026) Salmonella enterica subsp. enterica serovar Parat... 52 0.067 1
(BY723415) Mus musculus 16 days neonate thymus cDNA, RIKEN f... 44 0.082 2
(FE832840) CCAG44276.g1 CCAG Petrolisthes cinctipes heart, g... 50 0.086 2
(AU071909) Dictyostelium discoideum slug cDNA, clone SSC724. 48 0.12 2
(AF238313) Dictyostelium discoideum developmental protein DG... 44 0.17 3
(AU060791) Dictyostelium discoideum slug cDNA, clone SLB506. 48 0.18 2
(BJ363422) Dictyostelium discoideum cDNA clone:ddc26f14, 5' ... 48 0.18 2
(EL509403) G10_PF-SAU3A-T3-M-P18_D.AB1 Blood stage Plasmodiu... 46 0.22 2
(EL509402) G10_PF-SAU3A-T3-M-P18.AB1 Blood stage Plasmodium ... 46 0.22 2
(CT747884) Paramecium tetraurelia 5-PRIME EST from clone LK0... 48 0.22 2
(BJ370564) Dictyostelium discoideum cDNA clone:ddc54h13, 5' ... 48 0.24 2
(AL380100) Medicago truncatula EST MtBB50D07R1 : T7 end of c... 48 0.26 2
(CR925719) Zebrafish DNA sequence from clone DKEYP-68F4 in l... 50 0.27 1
(CU372906) Mouse DNA sequence from clone DN-226F16 on chromo... 50 0.27 1
(AL672042) Mouse DNA sequence from clone RP23-91P22 on chrom... 50 0.27 1
(AF081558) Mus musculus glial cells missing protein homolog ... 50 0.27 1
(AC165954) Mus musculus BAC clone RP23-450F5 from chromosome... 50 0.27 1
(AC164005) Mus musculus chromosome 1, clone RP24-312J21, com... 50 0.27 1
(AC159211) Mus musculus BAC clone RP23-33F21 from chromosome... 50 0.27 1
(AC157805) Mus musculus chromosome 1, clone RP24-324B17, com... 50 0.27 1
(AC132248) Mus musculus BAC clone RP24-425H24 from chromosom... 50 0.27 1
(AC124226) Mus musculus chromosome 15, clone RP23-94G21, com... 50 0.27 1
(AC123654) Mus musculus chromosome 15, clone RP23-161D16, co... 50 0.27 1
(AC107837) Mus musculus chromosome 1, clone RP23-272H13, com... 50 0.27 1
(AC107681) Mus musculus chromosome 12, clone RP23-380M24, co... 50 0.27 1
(AC107673) Mus musculus chromosome 1, clone RP24-263O21, com... 50 0.27 1
(AC098882) Mus musculus BAC clone RP23-122D13 from 12, compl... 50 0.27 1

>(BJ430841) Dictyostelium discoideum cDNA clone:ddv9b05, 3' end,
single read.
Length = 704

Score = 688 bits (347), Expect(2) = 0.0
Identities = 347/347 (100%)
Strand = Plus / Minus


Query: 534 cacgttcaagatctggttcaagaagaagaaagtctatcgattttagcttattagctgaaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cacgttcaagatctggttcaagaagaagaaagtctatcgattttagcttattagctgaaa 587


Query: 594 gaagagtttatgtaggtcgtatctcaaataaaactacaagagaatctctagaagattctt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gaagagtttatgtaggtcgtatctcaaataaaactacaagagaatctctagaagattctt 527


Query: 654 tccttaaatttggtaaagttctatcgtgtgatgttaaaaatggttatgcttttgttgaat 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tccttaaatttggtaaagttctatcgtgtgatgttaaaaatggttatgcttttgttgaat 467


Query: 714 ttgataatgaaaagagtgcaagagatgccattgaagaaatgcacgattcaattgttgacg 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttgataatgaaaagagtgcaagagatgccattgaagaaatgcacgattcaattgttgacg 407


Query: 774 gtgaaaagattcttgtagagaaatcacacagtggtaaaaaacatccagatgaatgtttca 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtgaaaagattcttgtagagaaatcacacagtggtaaaaaacatccagatgaatgtttca 347


Query: 834 tttgcagaggtcgtggccattgggctcgtagttgtccaaaaggtgga 880
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttgcagaggtcgtggccattgggctcgtagttgtccaaaaggtgga 300

Score = 337 bits (170), Expect(2) = 0.0
Identities = 170/170 (100%)
Strand = Plus / Minus


Query: 975 cttgtttcacatgcaatggtgttggtcacattgcaaaggattgtccaaaatcaaacagac 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cttgtttcacatgcaatggtgttggtcacattgcaaaggattgtccaaaatcaaacagac 146


Query: 1035 gttacaatccatacaacaacaataacaacaataacaatggtagaaatagagatagaagtt 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gttacaatccatacaacaacaataacaacaataacaatggtagaaatagagatagaagtt 86


Query: 1095 attctcgttcaagatcaagatcaccaagatacagaagcaatggtggaaac 1144
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 attctcgttcaagatcaagatcaccaagatacagaagcaatggtggaaac 36

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,033,366,154
Number of extensions: 71193393
Number of successful extensions: 5638502
Number of sequences better than 10.0: 951
Length of query: 1568
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1544
Effective length of database: 100,704,341,533
Effective search space: 155487503326952
Effective search space used: 155487503326952
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.15
Homology vs Protein
Query= Contig-U15187-1 (Contig-U15187-1Q) /CSM_Contig/Contig-U15187-1Q.Seq.d
(1568 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY846357_1(AY846357|pid:none) Bombyx mori lark-PA (lark) mRNA, c... 79 4e-13
(Q94901) RecName: Full=RNA-binding protein lark; &AE014296_1304... 78 8e-13
BC154222_1(BC154222|pid:none) Danio rerio zgc:85696, mRNA (cDNA ... 74 1e-11
AK060171_1(AK060171|pid:none) Oryza sativa Japonica Group cDNA c... 71 1e-10
EF575728_1(EF575728|pid:none) Oryza sativa (indica cultivar-grou... 71 1e-10
BT087828_1(BT087828|pid:none) Zea mays full-length cDNA clone ZM... 71 1e-10
AC124144_5(AC124144|pid:none) Oryza sativa (japonica cultivar-gr... 70 2e-10
AM468599_1(AM468599|pid:none) Vitis vinifera contig VV78X062299.... 70 2e-10
AK176551_1(AK176551|pid:none) Arabidopsis thaliana mRNA, complet... 69 4e-10
BT074492_1(BT074492|pid:none) Osmerus mordax clone omor-eva-520-... 69 5e-10
BT070075_1(BT070075|pid:none) Zea mays full-length cDNA clone ZM... 68 1e-09
FN320366_1(FN320366|pid:none) Schistosoma japonicum isolate Anhu... 67 2e-09
FN320364_1(FN320364|pid:none) Schistosoma japonicum isolate Anhu... 67 2e-09
FN357373_15(FN357373|pid:none) Schistosoma mansoni genome sequen... 67 2e-09
FN320365_1(FN320365|pid:none) Schistosoma japonicum isolate Anhu... 67 2e-09
FN320367_1(FN320367|pid:none) Schistosoma japonicum isolate Anhu... 67 2e-09
FN357373_14(FN357373|pid:none) Schistosoma mansoni genome sequen... 67 2e-09
BT065117_1(BT065117|pid:none) Zea mays full-length cDNA clone ZM... 67 2e-09
AK176666_1(AK176666|pid:none) Arabidopsis thaliana mRNA, complet... 67 2e-09
(Q8VE97) RecName: Full=Splicing factor, arginine/serine-rich 4; ... 66 3e-09
A48133(A48133) pre-mRNA splicing SRp75 - human &L14076_1(L14076... 66 3e-09
AK291509_1(AK291509|pid:none) Homo sapiens cDNA FLJ76859 complet... 66 3e-09
AK077648_1(AK077648|pid:none) Mus musculus 8 days embryo whole b... 66 3e-09
(Q08170) RecName: Full=Splicing factor, arginine/serine-rich 4; ... 66 3e-09
DQ972965_1(DQ972965|pid:none) Sus scrofa SFRS4 mRNA, complete cds. 66 3e-09
BT062575_1(BT062575|pid:none) Zea mays full-length cDNA clone ZM... 66 4e-09
EU959768_1(EU959768|pid:none) Zea mays clone 219906 splicing fac... 65 5e-09
BC082645_1(BC082645|pid:none) Xenopus laevis hypothetical LOC494... 65 9e-09
AK133872_1(AK133872|pid:none) Mus musculus 8 days embryo whole b... 65 9e-09
BC012039_1(BC012039|pid:none) Mus musculus splicing factor, argi... 65 9e-09
BC087121_1(BC087121|pid:none) Rattus norvegicus splicing factor,... 65 9e-09
AK004831_1(AK004831|pid:none) Mus musculus adult male lung cDNA,... 65 9e-09
BC046668_1(BC046668|pid:none) Xenopus laevis similar to splicing... 64 1e-08
AK341489_1(AK341489|pid:none) Acyrthosiphon pisum ACYPI003349 mR... 64 1e-08
AB170602_1(AB170602|pid:none) Macaca fascicularis brain cDNA clo... 64 1e-08
AK300411_1(AK300411|pid:none) Homo sapiens cDNA FLJ50863 complet... 64 1e-08
DQ972964_1(DQ972964|pid:none) Sus scrofa SFRS6 mRNA, complete cds. 64 1e-08
BC046895_1(BC046895|pid:none) Danio rerio zgc:55809, mRNA (cDNA ... 64 2e-08
BC124192_1(BC124192|pid:none) Danio rerio zgc:55809, mRNA (cDNA ... 64 2e-08
U30829_1(U30829|pid:none) Human splicing factor SRp55-3 (SRp55) ... 63 3e-08
DQ443394_1(DQ443394|pid:none) Bombyx mori arginine/serine-rich s... 63 3e-08
AY303541_1(AY303541|pid:none) Rattus norvegicus zinc responsive ... 63 3e-08
U89506_1(U89506|pid:none) Mus musculus Mlark mRNA, complete cds. 63 3e-08
AC087412_4(AC087412|pid:none) Oryza sativa chromosome 3 BAC OSJN... 63 3e-08
(Q8C7Q4) RecName: Full=RNA-binding protein 4; AltName: Full=RNA-... 63 3e-08
(Q64LC9) RecName: Full=RNA-binding protein 4B; AltName: Full=RNA... 63 3e-08
U30828_1(U30828|pid:none) Human splicing factor SRp55-2 (SRp55) ... 63 3e-08
FN357583_8(FN357583|pid:none) Schistosoma mansoni genome sequenc... 63 3e-08
(Q6IQ97) RecName: Full=RNA-binding protein 4.1; AltName: Full=RN... 62 4e-08
BT081512_1(BT081512|pid:none) Rana catesbeiana clone rcat-evr-51... 62 4e-08
AL935272_3(AL935272|pid:none) Zebrafish DNA sequence from clone ... 62 6e-08
DQ917635_1(DQ917635|pid:none) Sus scrofa RBM4 mRNA, complete cds. 62 8e-08
AF173640_2(AF173640|pid:none) Arabidopsis thaliana splicing fact... 62 8e-08
AF001035_2(AF001035|pid:none) Arabidopsis thaliana ASF/SF2 homol... 62 8e-08
(O22315) RecName: Full=Pre-mRNA-splicing factor SF2; AltName: Fu... 62 8e-08
M98340_1(M98340|pid:none) Arabidopis thaliana ribonucleoprotein ... 62 8e-08
AF173640_5(AF173640|pid:none) Arabidopsis thaliana splicing fact... 62 8e-08
AF173640_1(AF173640|pid:none) Arabidopsis thaliana splicing fact... 62 8e-08
AY128338_1(AY128338|pid:none) Arabidopsis thaliana SF2/ASF-like ... 62 8e-08
AF173640_3(AF173640|pid:none) Arabidopsis thaliana splicing fact... 62 8e-08
FN320327_1(FN320327|pid:none) Schistosoma japonicum isolate Anhu... 61 1e-07
(P78814) RecName: Full=Pre-mRNA-splicing factor srp2; &AF012278... 61 1e-07
FN320324_1(FN320324|pid:none) Schistosoma japonicum isolate Anhu... 61 1e-07
BC046057_1(BC046057|pid:none) Danio rerio RNA binding motif prot... 61 1e-07
BC067187_1(BC067187|pid:none) Danio rerio RNA binding motif prot... 61 1e-07
BC065633_1(BC065633|pid:none) Danio rerio zgc:77262, mRNA (cDNA ... 61 1e-07
BC044503_1(BC044503|pid:none) Danio rerio RNA binding motif prot... 61 1e-07
AC135927_5(AC135927|pid:none) Oryza sativa (japonica cultivar-gr... 60 2e-07
AP008211_951(AP008211|pid:none) Oryza sativa (japonica cultivar-... 60 2e-07
AC135928_11(AC135928|pid:none) Oryza sativa (japonica cultivar-g... 60 2e-07
BC095368_1(BC095368|pid:none) Danio rerio zgc:110682, mRNA (cDNA... 60 3e-07
EU962006_1(EU962006|pid:none) Zea mays clone 239583 unknown mRNA. 60 3e-07
BT043684_1(BT043684|pid:none) Salmo salar clone HM5_1838 hyperos... 59 4e-07
BT057440_1(BT057440|pid:none) Salmo salar clone ssal-evf-569-239... 59 4e-07
BT087787_1(BT087787|pid:none) Zea mays full-length cDNA clone ZM... 59 4e-07
Z66521_7(Z66521|pid:none) Caenorhabditis elegans Cosmid W02B12, ... 59 4e-07
Z66521_6(Z66521|pid:none) Caenorhabditis elegans Cosmid W02B12, ... 59 4e-07
D89163_1(D89163|pid:none) Schizosaccharomyces pombe mRNA, partia... 59 6e-07
BT064695_1(BT064695|pid:none) Zea mays full-length cDNA clone ZM... 59 6e-07
BT050206_1(BT050206|pid:none) Salmo salar clone ssal-evf-501-088... 59 6e-07
AC092557_8(AC092557|pid:none) Oryza sativa chromosome 3 BAC OSJN... 59 6e-07
AF533016_1(AF533016|pid:none) Salmo salar hyperosmotic glycine r... 58 8e-07
AM463653_3(AM463653|pid:none) Vitis vinifera contig VV78X030354.... 58 8e-07
BT057118_1(BT057118|pid:none) Salmo salar clone ssal-rgb2-592-00... 58 8e-07
BC044085_1(BC044085|pid:none) Xenopus laevis similar to splicing... 58 8e-07
BT044019_1(BT044019|pid:none) Salmo salar clone HM5_1035 hyperos... 58 8e-07
BT048518_1(BT048518|pid:none) Salmo salar clone ssal-evf-501-381... 58 8e-07
AC006954_11(AC006954|pid:none) Arabidopsis thaliana chromosome 2... 58 1e-06
BT059420_1(BT059420|pid:none) Salmo salar clone ssal-rgf-539-367... 58 1e-06
DQ648521_1(DQ648521|pid:none) Bombyx mori splicing factor argini... 57 1e-06
AP004384_18(AP004384|pid:none) Oryza sativa Japonica Group genom... 57 1e-06
AY649841_3(AY649841|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 57 2e-06
AC134242_17(AC134242|pid:none) Medicago truncatula clone mth2-10... 57 2e-06
AF036339_1(AF036339|pid:none) Euphorbia esula glycine-rich RNA-b... 57 2e-06
AY649841_2(AY649841|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 57 2e-06
BT055613_1(BT055613|pid:none) Zea mays full-length cDNA clone ZM... 57 2e-06
CR940353_284(CR940353|pid:none) Theileria annulata strain Ankara... 57 2e-06
EU972135_1(EU972135|pid:none) Zea mays clone 375808 splicing fac... 57 2e-06
BC074634_1(BC074634|pid:none) Xenopus tropicalis keratin 5, gene... 57 2e-06
AL844504_170(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 57 2e-06
AK118074_1(AK118074|pid:none) Arabidopsis thaliana At4g02430 mRN... 57 2e-06
AM910992_156(AM910992|pid:none) Plasmodium knowlesi strain H chr... 57 2e-06
CR855564_1(CR855564|pid:none) Xenopus tropicalis finished cDNA, ... 57 2e-06
AF069298_10(AF069298|pid:none) Arabidopsis thaliana BAC T14P8. ... 57 2e-06
AY649842_2(AY649842|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 56 3e-06
BC108786_1(BC108786|pid:none) Xenopus laevis similar to RNA bind... 56 3e-06
BC045210_1(BC045210|pid:none) Xenopus laevis similar to RNA bind... 56 3e-06
BT052550_1(BT052550|pid:none) Medicago truncatula clone MTYFD_FE... 56 3e-06
AM445604_2(AM445604|pid:none) Vitis vinifera contig VV78X206771.... 56 3e-06
(Q5EA36) RecName: Full=RNA-binding protein 14; AltName: Full=RNA... 56 3e-06
AK153230_1(AK153230|pid:none) Mus musculus bone marrow macrophag... 56 3e-06
EU962966_1(EU962966|pid:none) Zea mays clone 246956 splicing fac... 56 3e-06
EF677312_1(EF677312|pid:none) Picea sitchensis clone WS02765_E09... 56 3e-06
S20710(S20710) hypothetical protein, 16K - mouse &X52102_1(X521... 56 3e-06
(Q23120) RecName: Full=Probable splicing factor, arginine/serine... 56 3e-06
BC071160_1(BC071160|pid:none) Xenopus laevis MGC83263 protein, m... 56 3e-06
AJ245939_1(AJ245939|pid:none) Ricinus communis mRNA for glycine-... 56 3e-06
BT060477_1(BT060477|pid:none) Zea mays full-length cDNA clone ZM... 56 3e-06
BT068530_1(BT068530|pid:none) Zea mays full-length cDNA clone ZM... 56 3e-06
(Q8C2Q3) RecName: Full=RNA-binding protein 14; AltName: Full=RNA... 56 3e-06
AF315811_1(AF315811|pid:none) Triticum aestivum RNA-binding prot... 56 4e-06
AK106176_1(AK106176|pid:none) Oryza sativa Japonica Group cDNA c... 56 4e-06
BC061344_1(BC061344|pid:none) Xenopus tropicalis RNA binding mot... 56 4e-06
EF144619_1(EF144619|pid:none) Populus trichocarpa clone WS01116_... 55 5e-06
BT059273_1(BT059273|pid:none) Salmo salar clone ssal-rgf-537-370... 55 5e-06
AK063879_1(AK063879|pid:none) Oryza sativa Japonica Group cDNA c... 55 5e-06
EU968475_1(EU968475|pid:none) Zea mays clone 321216 unknown mRNA. 55 7e-06
AK004928_1(AK004928|pid:none) Mus musculus adult male liver cDNA... 55 7e-06
AF031933_1(AF031933|pid:none) Euphorbia esula glycine-rich RNA-b... 55 7e-06
(P82277) RecName: Full=30S ribosomal protein 2, chloroplastic; A... 55 7e-06
AM422105_1(AM422105|pid:none) Danio rerio partial mRNA for RNA b... 55 7e-06
AF033587_1(AF033587|pid:none) Arabidopsis thaliana SRZ21 mRNA, c... 55 7e-06
EF678296_1(EF678296|pid:none) Picea sitchensis clone WS02913_E10... 55 7e-06
BT001482_1(BT001482|pid:none) Drosophila melanogaster LD22171 fu... 55 9e-06
BC063235_1(BC063235|pid:none) Danio rerio splicing factor, argin... 55 9e-06
BX649404_2(BX649404|pid:none) Zebrafish DNA sequence from clone ... 55 9e-06
AJ720000_1(AJ720000|pid:none) Gallus gallus mRNA for hypothetica... 55 9e-06
BC055238_1(BC055238|pid:none) Danio rerio splicing factor, argin... 55 9e-06
Z54163_1(Z54163|pid:none) C.tentans mRNA for hrp45 protein. 55 9e-06
BT080250_1(BT080250|pid:none) Caligus clemensi clone ccle-evs-50... 55 9e-06
BX649404_1(BX649404|pid:none) Zebrafish DNA sequence from clone ... 55 9e-06
AK073210_1(AK073210|pid:none) Oryza sativa Japonica Group cDNA c... 55 9e-06
EU965056_1(EU965056|pid:none) Zea mays clone 283482 splicing fac... 54 1e-05
AK099033_1(AK099033|pid:none) Oryza sativa Japonica Group cDNA c... 54 1e-05
BT077745_1(BT077745|pid:none) Lepeophtheirus salmonis Pacific fo... 54 1e-05
AP008209_1440(AP008209|pid:none) Oryza sativa (japonica cultivar... 54 1e-05
EU979486_1(EU979486|pid:none) Ornithoctonus huwena clone HWE183 ... 54 1e-05
AL590442_25(AL590442|pid:none) chromosome II of strain GB-M1 of ... 54 1e-05
AF200321_1(AF200321|pid:none) Catharanthus roseus clone C4.7 put... 54 1e-05
AK061903_1(AK061903|pid:none) Oryza sativa Japonica Group cDNA c... 54 1e-05
BC064960_1(BC064960|pid:none) Homo sapiens RNA binding motif pro... 54 2e-05
AK032454_1(AK032454|pid:none) Mus musculus adult male olfactory ... 54 2e-05
CU633447_37(CU633447|pid:none) Podospora anserina genomic DNA ch... 54 2e-05
AL832566_1(AL832566|pid:none) Homo sapiens mRNA; cDNA DKFZp547K0... 54 2e-05
AF315633_1(AF315633|pid:none) Homo sapiens coactivator modulator... 54 2e-05
BX547938_9(BX547938|pid:none) Zebrafish DNA sequence from clone ... 54 2e-05
BX547938_7(BX547938|pid:none) Zebrafish DNA sequence from clone ... 54 2e-05
BC065586_1(BC065586|pid:none) Danio rerio zgc:77155, mRNA (cDNA ... 54 2e-05
AK340903_1(AK340903|pid:none) Acyrthosiphon pisum ACYPI006929 mR... 54 2e-05
CP000592_235(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 54 2e-05
CP001110_1948(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 54 2e-05
BC097250_1(BC097250|pid:none) Danio rerio splicing factor, argin... 54 2e-05
BC077356_1(BC077356|pid:none) Xenopus laevis similar to RNA bind... 54 2e-05
BC133851_1(BC133851|pid:none) Danio rerio splicing factor, argin... 54 2e-05
BX547938_10(BX547938|pid:none) Zebrafish DNA sequence from clone... 54 2e-05
BT074878_1(BT074878|pid:none) Osmerus mordax clone omor-rgc-502-... 54 2e-05
EU087580_1(EU087580|pid:none) Ilyanassa obsoleta RNA-binding 1-l... 54 2e-05
EF082522_1(EF082522|pid:none) Picea sitchensis clone WS0297_G20 ... 53 3e-05
AY050483_1(AY050483|pid:none) Prunus avium putative glycine-rich... 53 3e-05
AC002335_10(AC002335|pid:none) Arabidopsis thaliana chromosome 2... 53 3e-05
BC044458_1(BC044458|pid:none) Danio rerio zgc:55701, mRNA (cDNA ... 53 3e-05
AC134242_12(AC134242|pid:none) Medicago truncatula clone mth2-10... 53 3e-05
BT076436_1(BT076436|pid:none) Caligus rogercresseyi clone crog-e... 53 3e-05
BT075692_1(BT075692|pid:none) Osmerus mordax clone omor-rgc-511-... 53 3e-05
BT075762_1(BT075762|pid:none) Caligus rogercresseyi clone crog-e... 53 3e-05
AL928866_9(AL928866|pid:none) Zebrafish DNA sequence from clone ... 53 4e-05
AC134242_21(AC134242|pid:none) Medicago truncatula clone mth2-10... 53 4e-05
AL032631_3(AL032631|pid:none) Caenorhabditis elegans YAC Y106G6H... 53 4e-05
EU969871_1(EU969871|pid:none) Zea mays clone 336682 glycine-rich... 53 4e-05
BT049983_1(BT049983|pid:none) Salmo salar clone ssal-evd-529-162... 53 4e-05
(Q03251) RecName: Full=Glycine-rich RNA-binding protein 8; AltNa... 53 4e-05
AL032631_5(AL032631|pid:none) Caenorhabditis elegans YAC Y106G6H... 53 4e-05
AK303984_1(AK303984|pid:none) Homo sapiens cDNA FLJ59148 complet... 53 4e-05
FB872176_1(FB872176|pid:none) Sequence 91449 from Patent WO20080... 53 4e-05
BT039258_1(BT039258|pid:none) Zea mays full-length cDNA clone ZM... 53 4e-05
(P10979) RecName: Full=Glycine-rich RNA-binding, abscisic acid-i... 53 4e-05
AC003114_19(AC003114|pid:none) Arabidopsis thaliana chromosome 1... 53 4e-05
FB872162_1(FB872162|pid:none) Sequence 91435 from Patent WO20080... 53 4e-05
EU971223_1(EU971223|pid:none) Zea mays clone 359846 glycine-rich... 53 4e-05
EU972052_1(EU972052|pid:none) Zea mays clone 373925 RNA binding ... 53 4e-05
AM433270_2(AM433270|pid:none) Vitis vinifera contig VV78X203954.... 53 4e-05
BT036700_1(BT036700|pid:none) Zea mays full-length cDNA clone ZM... 53 4e-05
BT050102_1(BT050102|pid:none) Salmo salar clone ssal-eve-504-214... 53 4e-05
EF148377_1(EF148377|pid:none) Populus trichocarpa x Populus delt... 52 5e-05
DQ019630_1(DQ019630|pid:none) Triticum aestivum alternative spli... 52 5e-05
AK103177_1(AK103177|pid:none) Oryza sativa Japonica Group cDNA c... 52 5e-05
(Q9NEW6) RecName: Full=Probable splicing factor, arginine/serine... 52 5e-05
AB023046_18(AB023046|pid:none) Arabidopsis thaliana genomic DNA,... 52 5e-05
(Q5KNY5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 52 5e-05
AM910991_171(AM910991|pid:none) Plasmodium knowlesi strain H chr... 52 5e-05
BT045551_1(BT045551|pid:none) Salmo salar clone ssal-rgf-524-289... 52 5e-05
AF200323_1(AF200323|pid:none) Catharanthus roseus clone C4.26 pu... 52 5e-05
AF310215_1(AF310215|pid:none) Sorghum bicolor glycine-rich RNA-b... 52 5e-05
AY649843_3(AY649843|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 52 5e-05
AY649843_2(AY649843|pid:none) Zea mays ASF/SF2-like pre-mRNA spl... 52 5e-05
AF005359_1(AF005359|pid:none) Nicotiana glutinosa RNA-binding pr... 52 6e-05
AL928866_8(AL928866|pid:none) Zebrafish DNA sequence from clone ... 52 6e-05
A40459(A40459;S14620) nuclear phosphoprotein SRp55 - fruit fly (... 52 6e-05
BT083094_1(BT083094|pid:none) Anoplopoma fimbria clone afim-evh-... 52 6e-05
AM447494_2(AM447494|pid:none) Vitis vinifera contig VV78X024983.... 52 6e-05
AJ719775_1(AJ719775|pid:none) Gallus gallus mRNA for hypothetica... 52 6e-05
AB062910_1(AB062910|pid:none) Physcomitrella patens PpGRP2 mRNA ... 52 6e-05
BC097003_1(BC097003|pid:none) Danio rerio splicing factor, argin... 52 6e-05
(Q99070) RecName: Full=Glycine-rich RNA-binding protein 2; &FB8... 52 6e-05
AK007729_1(AK007729|pid:none) Mus musculus 10 day old male pancr... 52 8e-05
AF009003_1(AF009003|pid:none) Pelargonium x hortorum glycine-ric... 52 8e-05
CP001101_100(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 52 8e-05
CR954212_227(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 52 8e-05
AX888078_1(AX888078|pid:none) Sequence 3941 from Patent EP1033401. 52 8e-05
FJ438505_1(FJ438505|pid:none) Epinephelus coioides hyperosmotic ... 52 8e-05
(Q13243) RecName: Full=Splicing factor, arginine/serine-rich 5; ... 52 8e-05
AE014297_1773(AE014297|pid:none) Drosophila melanogaster chromos... 52 8e-05
AK070807_1(AK070807|pid:none) Oryza sativa Japonica Group cDNA c... 52 8e-05
BC079925_1(BC079925|pid:none) Xenopus tropicalis splicing factor... 52 8e-05
AK300560_1(AK300560|pid:none) Homo sapiens cDNA FLJ57437 complet... 52 8e-05
Z81080_2(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 52 8e-05
BC077393_1(BC077393|pid:none) Xenopus laevis MGC81677 protein, m... 52 8e-05
BC146185_1(BC146185|pid:none) Bos taurus splicing factor, argini... 52 8e-05
AE014297_1777(AE014297|pid:none) Drosophila melanogaster chromos... 52 8e-05
(Q8BL97) RecName: Full=Splicing factor, arginine/serine-rich 7; ... 52 8e-05
BT066750_1(BT066750|pid:none) Zea mays full-length cDNA clone ZM... 52 8e-05
EU953346_1(EU953346|pid:none) Zea mays clone 1400990 unknown mRNA. 52 8e-05
BT083071_1(BT083071|pid:none) Anoplopoma fimbria clone afim-evh-... 52 8e-05
BC077185_1(BC077185|pid:none) Xenopus laevis MGC78845 protein, m... 52 8e-05
BT077917_1(BT077917|pid:none) Lepeophtheirus salmonis Pacific fo... 52 8e-05
AB209804_1(AB209804|pid:none) Homo sapiens premature mRNA for CS... 52 8e-05
(Q09167) RecName: Full=Splicing factor, arginine/serine-rich 5; ... 52 8e-05
T22008(T22008;T26011)hypothetical protein F39H2.2 - Caenorhabdit... 52 8e-05
(P49311) RecName: Full=Glycine-rich RNA-binding protein GRP2A; ... 52 8e-05
Z81080_1(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 52 8e-05
CR380954_132(CR380954|pid:none) Candida glabrata strain CBS138 c... 51 1e-04
BC099175_1(BC099175|pid:none) Rattus norvegicus splicing factor,... 51 1e-04
(A5DM21) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 51 1e-04
AK082848_1(AK082848|pid:none) Mus musculus ES cells cDNA, RIKEN ... 51 1e-04
EF148426_1(EF148426|pid:none) Populus trichocarpa x Populus delt... 51 1e-04
BC070967_1(BC070967|pid:none) Xenopus laevis hypothetical protei... 51 1e-04
BC083384_1(BC083384|pid:none) Danio rerio RNA binding protein, a... 51 1e-04
AB207971_1(AB207971|pid:none) Lolium perenne gene for glycine-ri... 51 1e-04
AK137795_1(AK137795|pid:none) Mus musculus 16 days neonate thymu... 51 1e-04
EF619490_1(EF619490|pid:none) Cervus elaphus arginine/serine-ric... 51 1e-04
CQ834656_1(CQ834656|pid:none) Sequence 527 from Patent WO2004058... 51 1e-04
T45890(T45890)splicing factor-like protein - Arabidopsis thaliana 51 1e-04
AE006470_132(AE006470|pid:none) Chlorobium tepidum TLS, complete... 51 1e-04
AK316998_1(AK316998|pid:none) Arabidopsis thaliana AT3G52150 mRN... 51 1e-04
BT030067_1(BT030067|pid:none) Arabidopsis thaliana At3g49430 gen... 51 1e-04
BC027391_1(BC027391|pid:none) Mus musculus splicing factor, argi... 51 1e-04
AK032861_1(AK032861|pid:none) Mus musculus 12 days embryo male w... 51 1e-04
BT080325_1(BT080325|pid:none) Caligus clemensi clone ccle-evs-50... 51 1e-04
BT040220_1(BT040220|pid:none) Zea mays full-length cDNA clone ZM... 51 1e-04
AY892661_1(AY892661|pid:none) Synthetic construct Homo sapiens c... 51 1e-04
AY398405_1(AY398405|pid:none) Danio rerio clone RK063A4C07 autoa... 51 1e-04
(Q16629) RecName: Full=Splicing factor, arginine/serine-rich 7; ... 51 1e-04
EU960438_1(EU960438|pid:none) Zea mays clone 224893 arginine/ser... 51 1e-04
(P38996) RecName: Full=Nuclear polyadenylated RNA-binding protei... 51 1e-04
(Q05966) RecName: Full=Glycine-rich RNA-binding protein 10; &FB... 51 1e-04
BC003283_1(BC003283|pid:none) Mus musculus poly(A) binding prote... 51 1e-04
AL606917_1(AL606917|pid:none) Mouse DNA sequence from clone RP23... 51 1e-04
EU569289_1(EU569289|pid:none) Nicotiana tabacum glycine-rich RNA... 51 1e-04
T51304(T51304) splicing factor RSp31 [imported] - Arabidopsis th... 51 1e-04
AJ441311_1(AJ441311|pid:none) Rumex obtusifolius mRNA for putati... 51 1e-04
AM910990_30(AM910990|pid:none) Plasmodium knowlesi strain H chro... 51 1e-04
AK135962_1(AK135962|pid:none) Mus musculus in vitro fertilized e... 51 1e-04
AL606917_2(AL606917|pid:none) Mouse DNA sequence from clone RP23... 51 1e-04
AL031668_5(AL031668|pid:none) Human DNA sequence from clone RP1-... 51 1e-04
BT044636_1(BT044636|pid:none) Salmo salar clone ssal-rgf-001-209... 51 1e-04
AY398360_1(AY398360|pid:none) Danio rerio clone RK140A4H11 heter... 51 1e-04
D37935_1(D37935|pid:none) Yeast DNA for RNA binding protein, com... 51 1e-04
BC071591_1(BC071591|pid:none) Homo sapiens poly(A) binding prote... 51 1e-04
AL606917_4(AL606917|pid:none) Mouse DNA sequence from clone RP23... 51 1e-04
L38696_1(L38696|pid:none) Homo sapiens autoantigen p542 mRNA, co... 51 1e-04
AL365277_14(AL365277|pid:none) Human DNA sequence from clone RP1... 51 1e-04
(Q13310) RecName: Full=Polyadenylate-binding protein 4; ... 51 1e-04
(P92964) RecName: Full=Arginine/serine-rich-splicing factor RSP3... 51 1e-04
CP000492_1229(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 51 1e-04
(Q9UKM9) RecName: Full=RNA-binding protein Raly; AltName: Full=h... 51 1e-04
AF020683_1(AF020683|pid:none) Rattus norvegicus RNA binding prot... 51 1e-04
AK222915_1(AK222915|pid:none) Homo sapiens mRNA for RNA binding ... 51 1e-04
AJ002763_1(AJ002763|pid:none) Chironomus tentans mRNA for P23 pr... 51 1e-04
AK243636_1(AK243636|pid:none) Oryza sativa Japonica Group cDNA, ... 50 2e-04
BT080536_1(BT080536|pid:none) Caligus clemensi clone ccle-evs-51... 50 2e-04
AJ002893_1(AJ002893|pid:none) Oryza sativa mRNA for glycine-rich... 50 2e-04
AP008209_2228(AP008209|pid:none) Oryza sativa (japonica cultivar... 50 2e-04
AJ719404_1(AJ719404|pid:none) Gallus gallus mRNA for hypothetica... 50 2e-04
A96762(A96762) probable RNA-binding glycine-rich protein T9L24.4... 50 2e-04
CP000127_2662(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 50 2e-04
AE013599_4123(AE013599|pid:none) Drosophila melanogaster chromos... 50 2e-04
AB451374_1(AB451374|pid:none) Homo sapiens SFRS5 mRNA for splici... 50 2e-04
CP000096_993(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 50 2e-04
CR940347_278(CR940347|pid:none) Theileria annulata strain Ankara... 50 2e-04
BT045197_1(BT045197|pid:none) Salmo salar clone ssal-rgf-514-254... 50 2e-04
CP000492_2580(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 50 2e-04
S71779(S71779) glycine-rich RNA-binding protein GRP1 - wheat &U... 50 2e-04
BX538350_45(BX538350|pid:none) Cryptosporidium parvum chromosome... 50 2e-04
BT074603_1(BT074603|pid:none) Osmerus mordax clone omor-rgc-514-... 50 2e-04
BT073963_1(BT073963|pid:none) Oncorhynchus mykiss clone omyk-evo... 50 2e-04
BT049685_1(BT049685|pid:none) Salmo salar clone ssal-rgb2-559-08... 50 2e-04
CR382125_834(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 50 2e-04
AC120985_5(AC120985|pid:none) Oryza sativa (japonica cultivar-gr... 50 2e-04
AF411956_7(AF411956|pid:none) Takifugu rubripes lck gene locus, ... 50 3e-04
FB912265_1(FB912265|pid:none) Sequence 131538 from Patent WO2008... 50 3e-04
BT045925_1(BT045925|pid:none) Salmo salar clone ssal-rgf-536-322... 50 3e-04
BC053126_1(BC053126|pid:none) Danio rerio poly(A) binding protei... 50 3e-04
AE016819_164(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 50 3e-04
(P19600) RecName: Full=Heterogeneous nuclear ribonucleoprotein C... 50 3e-04
FB912181_1(FB912181|pid:none) Sequence 131454 from Patent WO2008... 50 3e-04
CP000361_59(CP000361|pid:none) Arcobacter butzleri RM4018, compl... 50 3e-04
(P0C196) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 50 3e-04
DQ241855_1(DQ241855|pid:none) Solanum tuberosum clone 002F03 put... 50 3e-04
BT045946_1(BT045946|pid:none) Salmo salar clone ssal-rgf-537-144... 49 4e-04
(P29341) RecName: Full=Polyadenylate-binding protein 1; ... 49 4e-04
FB912257_1(FB912257|pid:none) Sequence 131530 from Patent WO2008... 49 4e-04
BC059662_1(BC059662|pid:none) Danio rerio poly A binding protein... 49 4e-04
FB872108_1(FB872108|pid:none) Sequence 91381 from Patent WO20080... 49 4e-04
AP007151_1217(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 49 4e-04
CR940347_15(CR940347|pid:none) Theileria annulata strain Ankara ... 49 4e-04
(Q5R8F7) RecName: Full=Polyadenylate-binding protein 1; ... 49 4e-04
CP001110_1298(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 49 4e-04
AB085214_1(AB085214|pid:none) Hyla japonica cirp-beta mRNA for c... 49 4e-04
S52491(S52491) polyadenylate binding protein II - human &Z48501... 49 4e-04
AJ302060_1(AJ302060|pid:none) Oryza sativa mRNA for glycine rich... 49 4e-04
BT021068_1(BT021068|pid:none) Bos taurus RNA binding protein (au... 49 4e-04
BX294151_174(BX294151|pid:none) Rhodopirellula baltica SH 1 comp... 49 4e-04
AL031668_6(AL031668|pid:none) Human DNA sequence from clone RP1-... 49 4e-04
(P11940) RecName: Full=Polyadenylate-binding protein 1; ... 49 4e-04
FN317170_1(FN317170|pid:none) Schistosoma japonicum isolate Anhu... 49 4e-04
AJ719881_1(AJ719881|pid:none) Gallus gallus mRNA for hypothetica... 49 4e-04
S54255(S54255) probable glycine rich RNA binding protein - potat... 49 4e-04
(Q9ZQA8) RecName: Full=Probable polyadenylate-binding protein At... 49 4e-04
FM992688_313(FM992688|pid:none) Candida dubliniensis CD36 chromo... 49 4e-04
FN357468_3(FN357468|pid:none) Schistosoma mansoni genome sequenc... 49 4e-04
(O77768) RecName: Full=Heterogeneous nuclear ribonucleoprotein C... 49 4e-04
AK153053_1(AK153053|pid:none) Mus musculus bone marrow macrophag... 49 4e-04
(Q9EPH8) RecName: Full=Polyadenylate-binding protein 1; ... 49 4e-04
AF011331_1(AF011331|pid:none) Oryza sativa glycine-rich protein ... 49 4e-04
BT025704_1(BT025704|pid:none) Arabidopsis thaliana At2g27330 mRN... 49 4e-04
AK088678_1(AK088678|pid:none) Mus musculus 2 days neonate thymus... 49 4e-04
AY893128_1(AY893128|pid:none) Synthetic construct Homo sapiens c... 49 5e-04
AB209558_1(AB209558|pid:none) Homo sapiens mRNA for splicing fac... 49 5e-04
CP000081_411(CP000081|pid:none) Leishmania major chromosome 35, ... 49 5e-04
AL929024_5(AL929024|pid:none) Mouse DNA sequence from clone RP23... 49 5e-04
(Q10667) RecName: Full=RNA-binding protein rnp-1; &T28063(T2806... 49 5e-04
AK131715_1(AK131715|pid:none) Mus musculus adult male testis cDN... 49 5e-04
B40040(B40040) alternative splicing factor ASF-2 - human &M7270... 49 5e-04
AL627248_7(AL627248|pid:none) Zebrafish DNA sequence from clone ... 49 5e-04
AK018176_1(AK018176|pid:none) Mus musculus adult male medulla ob... 49 5e-04
BC087074_1(BC087074|pid:none) Rattus norvegicus RNA binding prot... 49 5e-04
DQ200373_1(DQ200373|pid:none) Solanum tuberosum clone 059F05 pre... 49 5e-04
(P04147) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 49 5e-04
BC128931_1(BC128931|pid:none) Xenopus laevis similar to splicing... 49 5e-04
BC171863_1(BC171863|pid:none) Homo sapiens heterogeneous nuclear... 49 5e-04
AL627248_4(AL627248|pid:none) Zebrafish DNA sequence from clone ... 49 5e-04
AL929024_6(AL929024|pid:none) Mouse DNA sequence from clone RP23... 49 5e-04
BC153596_1(BC153596|pid:none) Danio rerio splicing factor, argin... 49 5e-04
BC123122_1(BC123122|pid:none) Xenopus laevis similar to splicing... 49 5e-04
BC144551_1(BC144551|pid:none) Homo sapiens heterogeneous nuclear... 49 5e-04
BC051134_1(BC051134|pid:none) Mus musculus poly(A) binding prote... 49 5e-04
(Q7SXP4) RecName: Full=Splicing factor, arginine/serine-rich 1-l... 49 5e-04
AK304470_1(AK304470|pid:none) Homo sapiens cDNA FLJ52850 complet... 49 5e-04
BC004851_1(BC004851|pid:none) Mus musculus hnRNP-associated with... 49 5e-04
CR940352_492(CR940352|pid:none) Theileria annulata strain Ankara... 49 5e-04
(Q5R7H2) RecName: Full=Splicing factor, arginine/serine-rich 1; ... 49 5e-04
AL929024_4(AL929024|pid:none) Mouse DNA sequence from clone RP23... 49 5e-04
(Q5ARI5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 49 5e-04
DQ440228_1(DQ440228|pid:none) Aedes aegypti clone AET-265 polyad... 49 5e-04
AB384975_1(AB384975|pid:none) Synthetic construct DNA, clone: pF... 49 5e-04
(Q5AI15) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 49 5e-04
AK091425_1(AK091425|pid:none) Homo sapiens cDNA FLJ34106 fis, cl... 49 5e-04
(Q6DII2) RecName: Full=Splicing factor, arginine/serine-rich 1; ... 49 5e-04
AL929024_2(AL929024|pid:none) Mouse DNA sequence from clone RP23... 49 5e-04
AK078715_1(AK078715|pid:none) Mus musculus adult male eyeball cD... 49 5e-04
(O60812) RecName: Full=Heterogeneous nuclear ribonucleoprotein C... 49 5e-04
BC095586_1(BC095586|pid:none) Danio rerio splicing factor, argin... 49 7e-04
AL049711_26(AL049711|pid:none) Arabidopsis thaliana DNA chromoso... 49 7e-04
BC056752_1(BC056752|pid:none) Danio rerio splicing factor, argin... 49 7e-04
AM502227_10(AM502227|pid:none) Leishmania infantum chromosome 9. 49 7e-04
CR382131_452(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 49 7e-04
AC136449_14(AC136449|pid:none) Medicago truncatula clone mth2-11... 49 7e-04
BT058737_1(BT058737|pid:none) Salmo salar clone ssal-rgf-002-150... 49 7e-04
(A1D4K4) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 49 7e-04
DQ534196_1(DQ534196|pid:none) Bombyx mori bmp-2 mRNA, complete c... 49 7e-04
DQ788634_1(DQ788634|pid:none) Squalus acanthias putative polyade... 49 7e-04
(A5DW14) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 49 7e-04
FJ356060_1(FJ356060|pid:none) Chorispora bungeana putative glyci... 49 7e-04
BC099992_1(BC099992|pid:none) Danio rerio poly A binding protein... 49 7e-04
AK289933_1(AK289933|pid:none) Homo sapiens cDNA FLJ77645 complet... 49 7e-04
BT070029_1(BT070029|pid:none) Zea mays full-length cDNA clone ZM... 48 9e-04
AE014186_186(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 48 9e-04
(Q9H361) RecName: Full=Polyadenylate-binding protein 3; ... 48 9e-04
DQ019626_1(DQ019626|pid:none) Triticum aestivum pre-mRNA process... 48 9e-04
AK312382_1(AK312382|pid:none) Homo sapiens cDNA, FLJ92712, highl... 48 9e-04
AK011336_1(AK011336|pid:none) Mus musculus 10 days embryo whole ... 48 9e-04
X57483_1(X57483|pid:none) X.laevis variant mRNA (X ABP 12-5) for... 48 9e-04
AK302213_1(AK302213|pid:none) Homo sapiens cDNA FLJ53542 complet... 48 9e-04
AF009411_1(AF009411|pid:none) Oryza sativa glycine-rich RNA-bind... 48 9e-04
AK019958_1(AK019958|pid:none) Mus musculus 8 days embryo whole b... 48 9e-04
AP003622_9(AP003622|pid:none) Oryza sativa Japonica Group genomi... 48 9e-04
DQ120640_1(DQ120640|pid:none) Homo sapiens PABP3 gene, partial c... 48 9e-04
AK312338_1(AK312338|pid:none) Homo sapiens cDNA, FLJ92657, highl... 48 9e-04
BC089438_1(BC089438|pid:none) Homo sapiens heterogeneous nuclear... 48 9e-04
DNXLPA(A32323;S12000) polyadenylate-binding protein - African cl... 48 9e-04
AB209527_1(AB209527|pid:none) Homo sapiens mRNA for Heterogeneou... 48 9e-04
AL136900_1(AL136900|pid:none) Homo sapiens mRNA; cDNA DKFZp434M1... 48 9e-04
BT048159_1(BT048159|pid:none) Salmo salar clone ssal-plnb-025-05... 48 9e-04
DQ215534_1(DQ215534|pid:none) Taeniopygia guttata clone 0063P001... 48 9e-04
AY616024_1(AY616024|pid:none) Zea mays arginine/serine-rich spli... 48 9e-04
AB044535_1(AB044535|pid:none) Xenopus laevis xCIRP2 mRNA for col... 48 9e-04
AK297482_1(AK297482|pid:none) Homo sapiens cDNA FLJ52993 complet... 48 9e-04
BC008423_1(BC008423|pid:none) Homo sapiens heterogeneous nuclear... 48 9e-04
(Q5RA82) RecName: Full=Heterogeneous nuclear ribonucleoproteins ... 48 9e-04
FN357605_9(FN357605|pid:none) Schistosoma mansoni genome sequenc... 48 9e-04
BC076931_1(BC076931|pid:none) Xenopus tropicalis polyadenylate-b... 48 9e-04
AF132026_1(AF132026|pid:none) Homo sapiens testis-specific poly(... 48 9e-04
CQ834838_1(CQ834838|pid:none) Sequence 709 from Patent WO2004058... 48 9e-04
BC008364_1(BC008364|pid:none) Homo sapiens heterogeneous nuclear... 48 9e-04
FJ502080_1(FJ502080|pid:none) Aristichthys nobilis clone B26 pol... 48 9e-04
AX972325_1(AX972325|pid:none) Sequence 3128 from Patent EP1104808. 48 0.001
CP000881_32(CP000881|pid:none) Hemiselmis andersenii chromosome ... 48 0.001
BC065953_1(BC065953|pid:none) Danio rerio RNA binding protein S1... 48 0.001
BC057251_1(BC057251|pid:none) Danio rerio RNA binding protein S1... 48 0.001
AK078158_1(AK078158|pid:none) Mus musculus adult male medulla ob... 48 0.001
BT076132_1(BT076132|pid:none) Caligus rogercresseyi clone crog-e... 48 0.001
CP001099_86(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, c... 48 0.001
AK095026_1(AK095026|pid:none) Homo sapiens cDNA FLJ37707 fis, cl... 48 0.001
AK034845_1(AK034845|pid:none) Mus musculus 12 days embryo embryo... 48 0.001
BC050079_1(BC050079|pid:none) Mus musculus synaptotagmin binding... 48 0.001
AB035725_1(AB035725|pid:none) Mus musculus SYNCRIP mRNA, complet... 48 0.001
AK162448_1(AK162448|pid:none) Mus musculus 12 days embryo embryo... 48 0.001
AK032086_1(AK032086|pid:none) Mus musculus adult male medulla ob... 48 0.001
BT077560_1(BT077560|pid:none) Lepeophtheirus salmonis Pacific fo... 48 0.001
(Q7TP47) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 48 0.001
AM445871_1(AM445871|pid:none) Vitis vinifera contig VV78X219207.... 48 0.001
AK089747_1(AK089747|pid:none) Mus musculus activated spleen cDNA... 48 0.001
(Q91ZR0) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 48 0.001
AX405935_1(AX405935|pid:none) Sequence 350 from Patent WO0222660. 48 0.001
FN392322_179(FN392322|pid:none) Pichia pastoris GS115 chromosome... 47 0.001
BT035887_1(BT035887|pid:none) Zea mays full-length cDNA clone ZM... 47 0.001
(Q4WAQ9) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 47 0.001
AF190655_1(AF190655|pid:none) Nicotiana tabacum poly(A)-binding ... 47 0.001
BT077056_1(BT077056|pid:none) Caligus rogercresseyi clone crog-e... 47 0.001
AK017370_1(AK017370|pid:none) Mus musculus 6 days neonate head c... 47 0.001
(Q24491) RecName: Full=RNA-binding protein Rsf1; AltName: Full=R... 47 0.001
AK092069_1(AK092069|pid:none) Homo sapiens cDNA FLJ34750 fis, cl... 47 0.001
U80455_2(U80455|pid:none) Caenorhabditis elegans cosmid T01D1, c... 47 0.001
EF523766_1(EF523766|pid:none) Caenorhabditis elegans ELAV-type R... 47 0.001
BT077137_1(BT077137|pid:none) Caligus rogercresseyi clone crog-e... 47 0.001
BT059149_1(BT059149|pid:none) Salmo salar clone ssal-rgf-528-152... 47 0.001
(P21187) RecName: Full=Polyadenylate-binding protein; S... 47 0.001
AX887360_1(AX887360|pid:none) Sequence 3223 from Patent EP1033401. 47 0.001
AK012371_1(AK012371|pid:none) Mus musculus 11 days embryo whole ... 47 0.001
CP001032_940(CP001032|pid:none) Opitutus terrae PB90-1, complete... 47 0.001
CU928179_343(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 47 0.001
(P31209) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 47 0.001
AY738476_1(AY738476|pid:none) Gemmata sp. Wa1-1 unknown gene. 47 0.001
AY223403_1(AY223403|pid:none) Schistosoma japonicum clone ZZZ332... 47 0.001
CP001071_952(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 47 0.001
AK051575_1(AK051575|pid:none) Mus musculus 12 days embryo spinal... 47 0.001
(Q5JQF8) RecName: Full=Polyadenylate-binding protein 1-like 2; A... 47 0.001
CR940347_358(CR940347|pid:none) Theileria annulata strain Ankara... 47 0.001
AL732567_9(AL732567|pid:none) Zebrafish DNA sequence from clone ... 47 0.001
EF523768_1(EF523768|pid:none) Caenorhabditis elegans ELAV-type R... 47 0.001
M64603_1(M64603|pid:none) Schizosaccharomyces pombe poly(A)-bind... 47 0.001
EU970526_1(EU970526|pid:none) Zea mays clone 346915 pre-mRNA-spl... 47 0.001
BC064134_1(BC064134|pid:none) Homo sapiens peptidylprolyl isomer... 47 0.001
AY398433_1(AY398433|pid:none) Danio rerio clone RK138A3D02 splic... 47 0.001
U80455_3(U80455|pid:none) Caenorhabditis elegans cosmid T01D1, c... 47 0.001
(Q8WUA2) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 47 0.001
CU062631_4(CU062631|pid:none) Zebrafish DNA sequence from clone ... 47 0.001
AK167258_1(AK167258|pid:none) Mus musculus blastocyst blastocyst... 47 0.001
DQ126684_1(DQ126684|pid:none) Gallus gallus aggrecan promoter bi... 47 0.002
AY506544_1(AY506544|pid:none) Lycopersicon esculentum DNA-bindin... 47 0.002
U41007_9(U41007|pid:none) Caenorhabditis elegans cosmid C33H5, c... 47 0.002
L05109_1(L05109|pid:none) Drosophila melanogaster poly(A)-bindin... 47 0.002
BC167357_1(BC167357|pid:none) Xenopus tropicalis peptidylprolyl ... 47 0.002
AK014406_1(AK014406|pid:none) Mus musculus 12 days embryo embryo... 47 0.002
AJ388517_1(AJ388517|pid:none) Canis familiaris mRNA for partial ... 47 0.002
CP001100_1585(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 47 0.002
AK152411_1(AK152411|pid:none) Mus musculus bone marrow macrophag... 47 0.002
DQ215543_1(DQ215543|pid:none) Taeniopygia guttata clone 0058P006... 47 0.002
(Q14011) RecName: Full=Cold-inducible RNA-binding protein; AltNa... 47 0.002
AJ719636_1(AJ719636|pid:none) Gallus gallus mRNA for hypothetica... 47 0.002
AB171494_1(AB171494|pid:none) Macaca fascicularis brain cDNA clo... 47 0.002
BC102773_1(BC102773|pid:none) Bos taurus cold inducible RNA bind... 47 0.002
BC070649_1(BC070649|pid:none) Xenopus laevis hypothetical protei... 47 0.002
AB306286_1(AB306286|pid:none) Alligator mississippiensis CIRBP m... 47 0.002
AY398370_1(AY398370|pid:none) Danio rerio clone RK105A4F05 poly(... 47 0.002
AY394938_1(AY394938|pid:none) Danio rerio clone RK045A2G06 RNA b... 47 0.002
BC157792_1(BC157792|pid:none) Xenopus tropicalis hypothetical pr... 47 0.002
CP000108_1527(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 47 0.002
AK009895_1(AK009895|pid:none) Mus musculus adult male tongue cDN... 47 0.002
(Q1DXH0) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 47 0.002

>AY846357_1(AY846357|pid:none) Bombyx mori lark-PA (lark) mRNA,
complete cds, alternatively spliced.
Length = 343

Score = 79.3 bits (194), Expect = 4e-13
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Frame = +2

Query: 596 RVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDG 775
+++VG +++KT + + F KFG V+ CD+ Y FV D DAI+E++ +VDG
Sbjct: 87 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDG 146

Query: 776 EKILVEKSHS------GKKHPDECFICRGRGHWARSCPK 874
+ + V+ S S G P++C+ C GHW++ CPK
Sbjct: 147 QPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPK 185

Score = 63.2 bits (152), Expect = 3e-08
Identities = 26/72 (36%), Positives = 45/72 (62%)
Frame = +2

Query: 596 RVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDG 775
++++G +S+KTT L F K+G V+ CD+ Y FV +NE+ R+AI+ ++ +V G
Sbjct: 8 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 67

Query: 776 EKILVEKSHSGK 811
+ I +E + S K
Sbjct: 68 QAIKIEAAKSRK 79

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 989,873,035
Number of extensions: 12160487
Number of successful extensions: 58732
Number of sequences better than 10.0: 2145
Number of HSP's gapped: 57807
Number of HSP's successfully gapped: 2665
Length of query: 522
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 389
Effective length of database: 620,718,517
Effective search space: 241459503113
Effective search space used: 241459503113
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.02 gvh: 0.62 alm: 0.17 top: 0.60 tms: 0.07 mit: 0.27 mip: 0.04
nuc: 0.31 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U15187-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 4
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0