>Contig-U15185-1 (Contig-U15185-1Q) /CSM_Contig/Contig-U15185-1Q.Seq.d
ACAGCAAGGAACTTCTCTGTGTTTGCGAATTCATTCAGCTGCTGCGACCA
TTGATGGTTCTGACCCCATGCGTCCGCTCACAGTTTCATACACAATGGCC
AAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGG
TGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGGT
ACCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGT
TGGTATCTGGAAATGTAACGGGTTGCCGTAAAGTTTTAGCTGGTGGTGCT
TGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACG
TCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATC
AGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATACTTGT
ATTACAGTTTATTATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

est1=VSE459Z,1,471
est2=VFB352Z,65,411
est3=VFB383Z,65,410
est4=VSF596Z,66,407
est5=VHA808F,69,452
est6=VHA808Z,69,402
est7=VHA861F,69,441
est8=VHA861Z,69,426
est9=VHH180F,69,430
est10=VHH180Z,69,413
est11=VSI473F,69,440
est12=VSH888F,73,440
est13=VSH888Z,73,428
est14=VSE429E,77,448
est15=VSF225F,79,440
est16=VSF225Z,79,408
est17=VSF596F,79,440
est18=VSI473Z,79,408
est19=VSC334E,81,465
est20=VSE566E,81,508
est21=VSG249F,81,455
est22=VSG249Z,81,444
est23=VSH830Z,81,446
est24=SSH726E,82,446
est25=VSI243F,83,440
est26=VSI243Z,83,408
est27=VSI440F,83,466
est28=VSI440Z,83,443
est29=VFB352F,88,471
est30=SSJ822E,89,443
est31=VSA643E,90,472
est32=VSB771E,90,446
est33=VSF702Z,90,406
est34=VSH330F,90,444
est35=VSH330Z,90,429
est36=SSE820E,91,509
est37=SSJ642E,91,437
est38=VSI222Z,91,406
est39=VSG783F,93,402
est40=VSH738Z,93,430
est41=FC-BG04E,94,450
est42=VSK161Z,95,441
est43=VSD405F,96,440
est44=VSG369F,97,440
est45=VSF715Z,98,407
est46=VSA138E,101,435
est47=VSH520Z,102,428
est48=VSK444Z,102,448
est49=VSK445Z,102,447
est50=VSK444F,103,471
est51=VSK445F,103,471
est52=VSC749E,104,462
est53=VSH738F,104,455
est54=VSK116F,104,440
est55=VSK116Z,104,408
est56=VSA733E,105,478
est57=VSD405Z,105,429
est58=VSF715F,108,444
est59=VSB366E,111,459
est60=VSF702F,113,440
est61=VSG691F,113,440
est62=VSK161F,114,466
est63=VSI222F,118,440
est64=VSC220Z,122,462
est65=VSI442F,124,455
est66=VSI442Z,124,441
est67=VSJ157F,128,455
est68=VSJ157Z,128,443
est69=VSE653Z,133,430
est70=VSH520F,149,440
est71=SSL475Z,177,440
est72=FC-IC1411F,200,475
est73=VSG359F,252,440
est74=VSI173Z,265,402
est75=VSE366E,320,459

QQGTSLCLRIHSAAATIDGSDPMRPLTVSYTMAKRTKKVGVVGKYGTRYGASLRKQVKKM
EITQHGYLHLFILW*rcrqtfirwylem*rvavkf*lvvlglcqlplvplldqlsdvses
*itkpfiyeik*irtnihwf*kinifkilvlqfiif*kkkkkkkkkkkkk

Frame A:
tarnfsvfansfsccdh*wf*phasahsfihngqknkesrscr*iryqiwcffkkas*kd
gnhptrvptpvhsvvkmpsdvhplvsgnvtgcrkvlaggawtmstaagatvrstirrlre
lnn*tiyi*nkinqdqytlvlknkyi*ntcitvyyflkkkkkkkkkkkkk


Frame B:
QQGTSLCLRIHSAAATIDGSDPMRPLTVSYTMAKRTKKVGVVGKYGTRYGASLRKQVKKM
EITQHGYLHLFILW*rcrqtfirwylem*rvavkf*lvvlglcqlplvplldqlsdvses
*itkpfiyeik*irtnihwf*kinifkilvlqfiif*kkkkkkkkkkkkk


Frame C:
skellcvcefiqllrplmvltpcvrsqfhtqwpkeqrkselsvntvpdmvll*esklkrw
kspntgtytcsfcgkdavrrssvgiwkcnglp*sfswwcldyvncrwchc*inyqtsqrv
k*lnhlymk*nksgpiytgfkk*iylkylyysllffkkkkkkkkkkkkk

Query= Contig-U15185-1 (Contig-U15185-1Q)
/CSM_Contig/Contig-U15185-1Q.Seq.d
         (511 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15185-1 (Contig-U15185-1Q) /CSM_Contig/Conti...   763  0.0
Contig-U16050-1 (Contig-U16050-1Q) /CSM_Contig/Conti...   103  3e-22
Contig-U14948-1 (Contig-U14948-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U09565-1 (Contig-U09565-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U16345-1 (Contig-U16345-1Q) /CSM_Contig/Conti...    32  0.79
Contig-U12510-1 (Contig-U12510-1Q) /CSM_Contig/Conti...    32  0.79
Contig-U03294-1 (Contig-U03294-1Q) /CSM_Contig/Conti...    32  0.79
Contig-U16375-1 (Contig-U16375-1Q) /CSM_Contig/Conti...    30  3.1
Contig-U16374-1 (Contig-U16374-1Q) /CSM_Contig/Conti...    30  3.1
Contig-U15603-1 (Contig-U15603-1Q) /CSM_Contig/Conti...    30  3.1

>Contig-U15185-1 (Contig-U15185-1Q) /CSM_Contig/Contig-U15185-1Q.Seq.d
          Length = 511

 Score =  763 bits (385), Expect = 0.0
 Identities = 385/385 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcaaggaacttctctgtgtttgcgaattcattcagctgctgcgaccattgatggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acagcaaggaacttctctgtgtttgcgaattcattcagctgctgcgaccattgatggttc 60

                                                                       
Query: 61  tgaccccatgcgtccgctcacagtttcatacacaatggccaaaagaacaaagaaagtcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgaccccatgcgtccgctcacagtttcatacacaatggccaaaagaacaaagaaagtcgg 120

                                                                       
Query: 121 agttgtcggtaaatacggtaccagatatggtgcttctttaagaaagcaagttaaaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttgtcggtaaatacggtaccagatatggtgcttctttaagaaagcaagttaaaaagat 180

                                                                       
Query: 181 ggaaatcacccaacacgggtacctacacctgttcattctgtggtaaagatgccgtcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaaatcacccaacacgggtacctacacctgttcattctgtggtaaagatgccgtcagac 240

                                                                       
Query: 241 gttcatccgttggtatctggaaatgtaacgggttgccgtaaagttttagctggtggtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttcatccgttggtatctggaaatgtaacgggttgccgtaaagttttagctggtggtgct 300

                                                                       
Query: 301 tggactatgtcaactgccgctggtgccactgttagatcaactatcagacgtctcagagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggactatgtcaactgccgctggtgccactgttagatcaactatcagacgtctcagagag 360

                                    
Query: 361 ttaaataactaaaccatttatatat 385
           |||||||||||||||||||||||||
Sbjct: 361 ttaaataactaaaccatttatatat 385


 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 446 cttgtattacagtttattatttttt 470
           |||||||||||||||||||||||||
Sbjct: 446 cttgtattacagtttattatttttt 470


>Contig-U16050-1 (Contig-U16050-1Q) /CSM_Contig/Contig-U16050-1Q.Seq.d
          Length = 2817

 Score =  103 bits (52), Expect = 3e-22
 Identities = 64/67 (95%), Gaps = 2/67 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcaaggaacttctctgtgtttgcgaattcat--tcagctgctgcgaccattgatggt 58
           ||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 848 acagcaatgaacttctctgtgtttgcgaattcatattcagctgctgcgaccattgatggt 789

                  
Query: 59  tctgacc 65
           |||||||
Sbjct: 788 tctgacc 782


>Contig-U14948-1 (Contig-U14948-1Q) /CSM_Contig/Contig-U14948-1Q.Seq.d
          Length = 2532

 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 362 taaataactaaaccatt 378
           |||||||||||||||||
Sbjct: 398 taaataactaaaccatt 382


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5186
Number of Sequences: 8402
Number of extensions: 5186
Number of successful extensions: 736
Number of sequences better than 10.0: 22
length of query: 511
length of database: 8,075,542
effective HSP length: 16
effective length of query: 495
effective length of database: 7,941,110
effective search space: 3930849450
effective search space used: 3930849450
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U15185-1 (Contig-U15185-1Q) /CSM_Contig/Contig-U15185-1Q.Seq.d
         (511 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU263122) Dictyostelium discoideum vegetative cDNA clone:VS...   392   0.0    3
(AU264896) Dictyostelium discoideum vegetative cDNA clone:VS...   383   e-160  2
(BJ418275) Dictyostelium discoideum cDNA clone:ddv32p02, 5' ...   242   e-156  3
(BJ418397) Dictyostelium discoideum cDNA clone:ddv32j16, 5' ...   242   e-156  3
(AU263097) Dictyostelium discoideum vegetative cDNA clone:VS...   242   e-156  3
(AU268131) Dictyostelium discoideum vegetative cDNA clone:VS...   242   e-156  3
(BJ422445) Dictyostelium discoideum cDNA clone:ddv45o19, 5' ...   242   e-156  3
(BJ436916) Dictyostelium discoideum cDNA clone:ddv32j16, 3' ...   242   e-156  3
(AU268132) Dictyostelium discoideum vegetative cDNA clone:VS...   242   e-156  3
(BJ441189) Dictyostelium discoideum cDNA clone:ddv45o19, 3' ...   242   e-156  3
(BJ436782) Dictyostelium discoideum cDNA clone:ddv32p02, 3' ...   242   e-156  3
(AU268752) Dictyostelium discoideum vegetative cDNA clone:VS...   238   e-155  3
(AU265482) Dictyostelium discoideum vegetative cDNA clone:VS...   238   e-155  3
(AU264895) Dictyostelium discoideum vegetative cDNA clone:VS...   238   e-155  3
(AU268753) Dictyostelium discoideum vegetative cDNA clone:VS...   238   e-155  3
(AU263205) Dictyostelium discoideum vegetative cDNA clone:VS...   234   e-153  3
(AU266193) Dictyostelium discoideum vegetative cDNA clone:VS...   234   e-153  3
(AU268039) Dictyostelium discoideum vegetative cDNA clone:VS...   234   e-153  3
(AU266194) Dictyostelium discoideum vegetative cDNA clone:VS...   234   e-153  3
(BJ429466) Dictyostelium discoideum cDNA clone:ddv3h13, 3' e...   234   e-153  3
(AU268697) Dictyostelium discoideum vegetative cDNA clone:VS...   230   e-152  3
(AU268698) Dictyostelium discoideum vegetative cDNA clone:VS...   230   e-152  3
(AU268380) Dictyostelium discoideum vegetative cDNA clone:VS...   230   e-152  3
(AU268381) Dictyostelium discoideum vegetative cDNA clone:VS...   230   e-152  3
(AU262489) Dictyostelium discoideum vegetative cDNA clone:VS...   234   e-151  3
(C91211) Dictyostelium discoideum slug cDNA, clone SSJ822.        218   e-149  3
(AU265668) Dictyostelium discoideum vegetative cDNA clone:VS...   359   e-148  2
(AU261626) Dictyostelium discoideum vegetative cDNA clone:VS...   216   e-148  3
(AU262236) Dictyostelium discoideum vegetative cDNA clone:VS...   216   e-148  3
(AU267273) Dictyostelium discoideum vegetative cDNA clone:VS...   216   e-148  3
(AU267274) Dictyostelium discoideum vegetative cDNA clone:VS...   216   e-148  3
(AU265642) Dictyostelium discoideum vegetative cDNA clone:VS...   216   e-148  3
(C90702) Dictyostelium discoideum slug cDNA, clone SSJ642.        214   e-147  3
(AU265483) Dictyostelium discoideum vegetative cDNA clone:VS...   238   e-147  3
(AU268345) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-147  3
(BJ411244) Dictyostelium discoideum cDNA clone:ddv3h13, 5' e...   214   e-147  3
(AU267896) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-146  3
(AU266810) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-146  3
(AU284649) Dictyostelium discoideum gamete cDNA clone:FC-BG0...   214   e-146  3
(BJ429522) Dictyostelium discoideum cDNA clone:ddv3f21, 3' e...   234   e-146  3
(AU270734) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-145  3
(AU271208) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-141  3
(AU271210) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-141  3
(AU267569) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-141  3
(AU271209) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-140  3
(AU271207) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-140  3
(AU267895) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-140  3
(AU270671) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-140  3
(AU270672) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-140  3
(AU261304) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-139  3
(AU263974) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-139  3
(AU266373) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-139  3
(AU265667) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-137  3
(AU261694) Dictyostelium discoideum vegetative cDNA clone:VS...   206   e-137  3
(AU262770) Dictyostelium discoideum vegetative cDNA clone:VS...   200   e-136  3
(AU261979) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-136  3
(AU263973) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-134  3
(AU265641) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-134  3
(AU270733) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-134  3
(AU266730) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-134  3
(AU268344) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-130  3
(AU268701) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-128  3
(AU268702) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-128  3
(AU269494) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-126  3
(AU269495) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-126  3
(C92491) Dictyostelium discoideum slug cDNA, clone SSE820.        214   e-124  3
(AU073642) Dictyostelium discoideum slug cDNA, clone SSH726.      232   e-120  3
(AU072538) Dictyostelium discoideum slug cDNA, clone SSE820.      214   e-120  3
(AU262404) Dictyostelium discoideum vegetative cDNA clone:VS...   186   e-114  3
(AU263270) Dictyostelium discoideum vegetative cDNA clone:VS...   214   e-111  3
(AU267568) Dictyostelium discoideum vegetative cDNA clone:VS...   202   e-104  3
(AU038782) Dictyostelium discoideum slug cDNA, clone SSL475.      214   1e-96  3
(AU272480) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   214   2e-87  2
(AU266362) Dictyostelium discoideum vegetative cDNA clone:VS...   214   3e-57  2
(EC762495) PSE00001712 rw_mgpallid Polysphondylium pallidum ...   137   2e-52  4
(AU038443) Dictyostelium discoideum slug cDNA, clone SSH726.      214   2e-51  1
(AU268266) Dictyostelium discoideum vegetative cDNA clone:VS...   121   2e-42  2
(AU266363) Dictyostelium discoideum vegetative cDNA clone:VS...   109   7e-26  2
(AU263056) Dictyostelium discoideum vegetative cDNA clone:VS...   119   1e-22  1
(EX148833) ZRA592F ZRA Zoophthora radicans cDNA clone ZRA592...    70   7e-21  4
(BJ329561) Dictyostelium discoideum cDNA clone:dda25a17, 5' ...    66   8e-19  2
(BJ325421) Dictyostelium discoideum cDNA clone:dda14l10, 5' ...    66   8e-19  2
(DY889330) CeleSEQ10828 Cunninghamella elegans pBluescript (...    80   1e-17  3
(BW794661) Branchiostoma floridae cDNA, gastrula clone:bfga0...    66   6e-15  3
(BW781448) Branchiostoma floridae cDNA, gastrula clone:bfga0...    66   8e-15  3
(EH042658) AS1RN25P1B06.ab1 Healthy Roots (RN) Arachis steno...    92   2e-14  1
(FE257016) CAPH6407.rev CAPH Naegleria gruberi amoeba stage ...    48   3e-14  4
(FE252535) CAPH4067.rev CAPH Naegleria gruberi amoeba stage ...    48   3e-14  4
(FE257017) CAPH6407.fwd CAPH Naegleria gruberi amoeba stage ...    48   3e-14  4
(FE254296) CAPH4982.rev CAPH Naegleria gruberi amoeba stage ...    48   3e-14  4
(FE252536) CAPH4067.fwd CAPH Naegleria gruberi amoeba stage ...    48   4e-14  4
(EH431344) NPE00000880 Neocallimastix patriciarum ZAP II cDN...    74   4e-14  2
(EH431853) NPE00000476 Neocallimastix patriciarum ZAP II cDN...    74   4e-14  2
(FE254297) CAPH4982.fwd CAPH Naegleria gruberi amoeba stage ...    48   4e-14  4
(AL116011) Botrytis cinerea strain T4 cDNA library.                84   5e-14  2
(AL116009) Botrytis cinerea strain T4 cDNA library.                84   5e-14  2
(AL115603) Botrytis cinerea strain T4 cDNA library.                84   5e-14  2
(AL112083) Botrytis cinerea strain T4 cDNA library.                84   5e-14  2
(AL112069) Botrytis cinerea strain T4 cDNA library.                84   5e-14  2
(AL110769) Botrytis cinerea strain T4 cDNA library.                84   5e-14  2

>(AU263122) Dictyostelium discoideum vegetative cDNA clone:VSE459,
           3' end single read.
          Length = 468

 Score =  392 bits (198), Expect(3) = 0.0
 Identities = 198/198 (100%)
 Strand = Plus / Plus


Query: 1   acagcaaggaacttctctgtgtttgcgaattcattcagctgctgcgaccattgatggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acagcaaggaacttctctgtgtttgcgaattcattcagctgctgcgaccattgatggttc 60


Query: 61  tgaccccatgcgtccgctcacagtttcatacacaatggccaaaagaacaaagaaagtcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgaccccatgcgtccgctcacagtttcatacacaatggccaaaagaacaaagaaagtcgg 120


Query: 121 agttgtcggtaaatacggtaccagatatggtgcttctttaagaaagcaagttaaaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttgtcggtaaatacggtaccagatatggtgcttctttaagaaagcaagttaaaaagat 180


Query: 181 ggaaatcacccaacacgg 198
           ||||||||||||||||||
Sbjct: 181 ggaaatcacccaacacgg 198

 Score =  214 bits (108), Expect(3) = 0.0
 Identities = 108/108 (100%)
 Strand = Plus / Plus


Query: 271 ggttgccgtaaagttttagctggtggtgcttggactatgtcaactgccgctggtgccact 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggttgccgtaaagttttagctggtggtgcttggactatgtcaactgccgctggtgccact 328


Query: 331 gttagatcaactatcagacgtctcagagagttaaataactaaaccatt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gttagatcaactatcagacgtctcagagagttaaataactaaaccatt 376

 Score =  147 bits (74), Expect(3) = 0.0
 Identities = 74/74 (100%)
 Strand = Plus / Plus


Query: 198 ggtacctacacctgttcattctgtggtaaagatgccgtcagacgttcatccgttggtatc 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggtacctacacctgttcattctgtggtaaagatgccgtcagacgttcatccgttggtatc 256


Query: 258 tggaaatgtaacgg 271
           ||||||||||||||
Sbjct: 257 tggaaatgtaacgg 270

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 359,334,382
Number of extensions: 19155271
Number of successful extensions: 1449558
Number of sequences better than 10.0: 2240
Length of query: 511
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 488
Effective length of database: 100,802,567,956
Effective search space: 49191653162528
Effective search space used: 49191653162528
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U15185-1 (Contig-U15185-1Q) /CSM_Contig/Contig-U15185-1Q.Seq.d
         (511 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...    60   3e-26
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...    68   1e-25
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...    67   1e-25
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...    69   1e-25
(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...    73   2e-25
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...    60   3e-25
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...    67   5e-25
AM049133_1(AM049133|pid:none) Sphaerius sp. APV-2005 mRNA for ri...    67   6e-25
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...    65   8e-25
(Q9VMU4) RecName: Full=60S ribosomal protein L37a;  &AE014134_91...    69   1e-24
AM049131_1(AM049131|pid:none) Cicindela littoralis mRNA for ribo...    67   1e-24
EU124988_1(EU124988|pid:none) Arenicola marina ribosomal protein...    68   1e-24
EU302557_1(EU302557|pid:none) Lineus viridis ribosomal protein r...    67   2e-24
AY961542_1(AY961542|pid:none) Lysiphlebus testaceipes ribosomal ...    67   2e-24
EU139237_1(EU139237|pid:none) Flustra foliacea putative 60S ribo...    66   2e-24
AF400200_1(AF400200|pid:none) Spodoptera frugiperda ribosomal pr...    67   3e-24
AY857453_1(AY857453|pid:none) Suberites domuncula L37a mRNA, com...    66   3e-24
AB180430_1(AB180430|pid:none) Plutella xylostella mRNA for Ribos...    67   4e-24
CU633900_583(CU633900|pid:none) Podospora anserina genomic DNA c...    60   6e-24
EF633910_1(EF633910|pid:none) Ornithodoros parkeri clone OP-38 r...    65   1e-23
EF070496_1(EF070496|pid:none) Maconellicoccus hirsutus clone WHM...    67   3e-23
DQ413220_1(DQ413220|pid:none) Acyrthosiphon pisum isolate WHAP02...    67   3e-23
CP001334_99(CP001334|pid:none) Micromonas sp. RCC299 chromosome ...    64   4e-23
(Q9HGL8) RecName: Full=60S ribosomal protein L43-A; AltName: Ful...    57   4e-23
BT082305_1(BT082305|pid:none) Anoplopoma fimbria clone afim-evh-...    65   5e-23
AK013246_1(AK013246|pid:none) Mus musculus 10, 11 days embryo wh...    65   2e-22
(P61513) RecName: Full=60S ribosomal protein L37a;  &(P61514) Re...    65   2e-22
(Q7SZB4) RecName: Full=60S ribosomal protein L37a;  &BC053766_1(...    64   2e-22
BT073068_1(BT073068|pid:none) Oncorhynchus mykiss clone omyk-evn...    64   5e-22
(O94686) RecName: Full=60S ribosomal protein L43-B; AltName: Ful...    57   7e-22
BC000555_1(BC000555|pid:none) Homo sapiens ribosomal protein L37...    64   9e-22
FM992692_419(FM992692|pid:none) Candida dubliniensis CD36 chromo...    56   9e-22
EU558380_1(EU558380|pid:none) Phoronis muelleri putative 60S rib...    64   1e-21
AE017342_498(AE017342|pid:none) Cryptococcus neoformans var. neo...    65   2e-21
BT048634_1(BT048634|pid:none) Salmo salar clone ssal-eve-004-039...    65   2e-21
CR382131_1441(CR382131|pid:none) Yarrowia lipolytica strain CLIB...    58   2e-21
(A4S6Z4) RecName: Full=60S ribosomal protein L37a;  &CP000594_9(...    64   4e-21
AY914904_1(AY914904|pid:none) Schistosoma japonicum ribosomal pr...    61   7e-21
(Q00VK4) RecName: Full=60S ribosomal protein L37a;                     64   1e-20
CP000499_382(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    54   2e-20
(O17307) RecName: Full=60S ribosomal protein L37a; Flags: Fragme...    59   6e-20
AM849539_1(AM849539|pid:none) Pomphorhynchus laevis partial mRNA...    59   7e-20
EF134341_1(EF134341|pid:none) Oxyrrhis marina isolate Om-5p-20 r...    51   7e-20
CR940352_339(CR940352|pid:none) Theileria annulata strain Ankara...    60   3e-19
(Q9Y0H7) RecName: Full=60S ribosomal protein L37a; Flags: Fragme...    54   8e-19
AY349162_1(AY349162|pid:none) Toxoplasma gondii N1 mRNA, complet...    66   1e-18
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...    67   1e-18
EU116875_1(EU116875|pid:none) Sipunculus nudus putative ribosoma...    69   4e-18
(Q8RXU5) RecName: Full=60S ribosomal protein L37a-2;  &AY080669_...    67   4e-18
(Q751L1) RecName: Full=60S ribosomal protein L43;  &AE016820_61(...    61   5e-18
AM920436_1953(AM920436|pid:none) Penicillium chrysogenum Wiscons...    67   7e-18
AM270092_3(AM270092|pid:none) Aspergillus niger contig An04c0310...    65   1e-17
(P49631) RecName: Full=60S ribosomal protein L43; AltName: Full=...    61   1e-17
EF639020_1(EF639020|pid:none) Triatoma infestans clone TI-518 60...    67   2e-17
CU928171_237(CU928171|pid:none) Kluyveromyces thermotolerans str...    61   2e-17
AC104709_13(AC104709|pid:none) Oryza sativa (japonica cultivar-g...    64   3e-17
EF145325_1(EF145325|pid:none) Populus trichocarpa clone WS01123_...    65   4e-17
(Q9XHE4) RecName: Full=60S ribosomal protein L37a;  &AF127042_1(...    65   4e-17
BT051233_1(BT051233|pid:none) Medicago truncatula clone MTYF1_F2...    65   4e-17
AB005904_1(AB005904|pid:none) Schizosaccharomyces pombe mRNA for...    50   6e-17
BT038453_1(BT038453|pid:none) Zea mays full-length cDNA clone ZM...    63   7e-17
EU957333_1(EU957333|pid:none) Zea mays clone 1588757 60S ribosom...    63   7e-17
(P43209) RecName: Full=60S ribosomal protein L37a;  &L21897_1(L2...    67   9e-17
EU964717_1(EU964717|pid:none) Zea mays clone 281068 60S ribosoma...    63   9e-17
(Q9ZRS8) RecName: Full=60S ribosomal protein L37a;  &AJ131732_1(...    65   2e-16
(Q9SRK6) RecName: Full=Putative 60S ribosomal protein L37a-1;  &...    62   2e-16
BT071239_1(BT071239|pid:none) Picea sitchensis clone WS02813_H15...    65   2e-16
CR954215_5(CR954215|pid:none) Ostreococcus tauri strain OTTH0595...    49   2e-16
AY961471_1(AY961471|pid:none) Phytophthora infestans clone MY-06...    60   5e-15
DQ927281_1(DQ927281|pid:none) Triatoma brasiliensis clone TBQ-73...    59   1e-14
AM494970_88(AM494970|pid:none) Leishmania braziliensis chromosom...    55   1e-14
CP000882_22(CP000882|pid:none) Hemiselmis andersenii chromosome ...    61   2e-14
CR548612_318(CR548612|pid:none) Paramecium tetraurelia macronucl...    59   8e-13
(O96184) RecName: Full=60S ribosomal protein L37a;  &AE001362_95...    60   2e-12
EU962284_1(EU962284|pid:none) Zea mays clone 241521 60S ribosoma...    65   2e-12
AJ010592_152(AJ010592|pid:none) Guillardia theta DNA for complet...    61   2e-11
BT055085_1(BT055085|pid:none) Zea mays full-length cDNA clone ZM...    46   2e-10
EU964279_1(EU964279|pid:none) Zea mays clone 277534 unknown mRNA.      65   2e-10
EF608929_1(EF608929|pid:none) Paeonia suffruticosa clone 1 60S r...    65   5e-10
BT056147_1(BT056147|pid:none) Zea mays full-length cDNA clone ZM...    63   4e-09
AL590447_101(AL590447|pid:none) chromosome VII of strain GB-M1 o...    40   6e-09
EU965694_1(EU965694|pid:none) Zea mays clone 288039 unknown mRNA.      57   3e-07
CP000816_791(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    42   6e-07
B71204(B71204) ribosomal protein L37a [similarity] - Pyrococcus ...    33   4e-05
(Q6M0M1) RecName: Full=50S ribosomal protein L37Ae;  &BX950229_2...    35   5e-05
(Q8TYC3) RecName: Full=50S ribosomal protein L37Ae;  &AE009439_3...    37   7e-05
(A6URN7) RecName: Full=50S ribosomal protein L37Ae;  &CP000742_1...    35   7e-05
(A6VIN8) RecName: Full=50S ribosomal protein L37Ae;  &CP000745_1...    35   1e-04
(Q97BZ3) RecName: Full=50S ribosomal protein L37Ae;  &BA000011_3...    37   3e-04
GM015893_98(GM015893|pid:none) Sequence 723 from Patent EP1923464.     34   3e-04
(Q5JDM6) RecName: Full=50S ribosomal protein L37Ae;  &AP006878_6...    34   3e-04
(Q9V202) RecName: Full=50S ribosomal protein L37Ae;  &AJ248283_2...    33   3e-04
CP001398_805(CP001398|pid:none) Thermococcus gammatolerans EJ3, ...    34   4e-04
(B6YTZ8) RecName: Full=50S ribosomal protein L37Ae;  &CP000855_4...    33   4e-04
AY596297_1495(AY596297|pid:none) Haloarcula marismortui ATCC 430...    32   5e-04
CP000505_488(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...    37   0.002
(Q74N55) RecName: Full=50S ribosomal protein L37Ae;  &AE017199_3...    37   0.004
EU810296_1(EU810296|pid:none) Gymnochlora stellata 60S ribosomal...    43   0.005
(Q8ZVN1) RecName: Full=50S ribosomal protein L37Ae;                    38   0.018
EU962132_1(EU962132|pid:none) Zea mays clone 240491 unknown mRNA.      41   0.019
(B1Y976) RecName: Full=50S ribosomal protein L37Ae;  &CP001014_1...    37   0.038
CP000660_1869(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135...    37   0.038
CP001140_1319(CP001140|pid:none) Desulfurococcus kamchatkensis 1...    39   0.074
(O26777) RecName: Full=50S ribosomal protein L37Ae;  &AE000666_6...    39   0.097
DQ158856_18(DQ158856|pid:none) Bigelowiella natans nucleomorph c...    33   0.11
AC158502_9(AC158502|pid:none) Medicago truncatula chromosome 7 c...    38   0.13
CP000254_2208(CP000254|pid:none) Methanospirillum hungatei JF-1,...    29   0.14
CP000099_2427(CP000099|pid:none) Methanosarcina barkeri str. Fus...    29   0.84
(P60619) RecName: Full=50S ribosomal protein L37Ae;                    30   2.3
AP010904_2363(AP010904|pid:none) Desulfovibrio magneticus RS-1 D...    33   3.0
CP001399_1357(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    33   3.1
CP000477_1332(CP000477|pid:none) Methanosaeta thermophila PT, co...    27   5.0

>A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.
           &CS279268_1(CS279268|pid:none)
          Length = 92

 Score = 60.5 bits (145), Expect(3) = 3e-26
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +2

Query: 95  MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHG 199
           M+KRTKKVG+ GKYG RYGASLRK VKK E+ QHG
Sbjct: 1   MSKRTKKVGITGKYGVRYGASLRKTVKKXEVWQHG 35

 Score = 53.1 bits (126), Expect(3) = 3e-26
 Identities = 20/25 (80%), Positives = 23/25 (92%)
 Frame = +3

Query: 198 GTYTCSFCGKDAVRRSSVGIWKCNG 272
           GTYTC FCGKDAV+R++VGIWKC G
Sbjct: 35  GTYTCDFCGKDAVKRTAVGIWKCRG 59

 Score = 47.4 bits (111), Expect(3) = 3e-26
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +1

Query: 271 GCRKVLAGGAWTMSTAAGATVRSTIRRLREL 363
           GCRK  AGGAW + T A  TV+ST RRLREL
Sbjct: 59  GCRKTTAGGAWQLQTTAALTVKSTTRRLREL 89

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 792,955,023
Number of extensions: 14975859
Number of successful extensions: 42791
Number of sequences better than 10.0: 112
Number of HSP's gapped: 42782
Number of HSP's successfully gapped: 303
Length of query: 170
Length of database: 1,051,180,864
Length adjustment: 119
Effective length of query: 51
Effective length of database: 666,030,343
Effective search space: 33967547493
Effective search space used: 33967547493
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

 psg: 0.86  gvh: 0.51  alm: 0.52  top: 0.43  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15185-1 is nuc