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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15179-1
Contig ID Contig-U15179-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15179-1 (Contig-U15179-1Q) /CSM_Contig/Contig-U15179-1Q.Seq.d
AAAAATGGATTTATTTAGTCATTTAAATTGGTATAGTGGCGATTTTATGA
ATGAAGATGGCGAGCCAATAAAGAGTATACCAAGTGGAAAATTAATATTA
GTTTCAGATACATTAGAATCTGAAGGTTCATTTTTAATTCATTATTTTTT
ACAATCAATATTTAAAGCAACAACCTCAACAAACTCATCAACCAACAATA
ATAATAGCAATAATAGTGGTGGTGTTGGTGGTGGTGCATGTTTATTAGGA
TTGAATCAAAGTTTATATAATTATTTTAATGTTGGTAGAAAATTAGGATA
TAATTTAACAACAGAATATAATAAAGGTAATTTCACATTTATAAATGGAT
TATCAACACCATATAAATGGATAATTGAACAAAGATTACAACAATTAGAG
GATCAAGGTATTGATGAAGAACCACAATTAGACTCAATCTCTCAAGGTTT
TAATCCATTTCCAACTATTCATTTAATTGATAATAAGAATATCACTTCCT
CCTCCTCCTCCTCTTCTTATTCAAACTCTAATAATAAAAATAAAAATAAT
AATGAATTAAAAGACATTTTATATAAAATTTATAATGAATTTATAAATGA
TCATAAGAAAAGAGTAATGAATAATAATAATAATTCAAAGACTTTATTCA
TTATTGATGGTTTAAATTTATTAGAGAGTCATTATTCTACAAATCCAAGT
GGTTCAAATATGGATATTTTAAACTTTTTACAATATTGTCATAATTATAT
CAAAGAGAATTCAACAACTTGTAGTATGATAATACTTTATCATAGTGATT
GTGATGCCGATCCAAAATTCTTTAATTTACTTCAATATGAATCCGATTTA
ACAATCAATATAACTGGTTTAAAATCTGGTTATTCAAAAGATATTGATGG
TCAATTAAATTTTATACAAAAAGATGAAAAAAATAATACATTTACAAGAG
TTAATCCAATTCATTATCAAGCATTAGATAATTCAATTAGATTCTATCAA
TGGGTTCAAGAATTCAATAAAGTCTTTTTTTTTTTTTACAATTTAAAAAA
AAAA
Gap no gap
Contig length 1054
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2356587
End point 2357632
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U15179
List of clone(s) 

est1=FC-BE14E,1,1054
Translated Amino Acid sequence 
KMDLFSHLNWYSGDFMNEDGEPIKSIPSGKLILVSDTLESEGSFLIHYFLQSIFKATTST
NSSTNNNNSNNSGGVGGGACLLGLNQSLYNYFNVGRKLGYNLTTEYNKGNFTFINGLSTP
YKWIIEQRLQQLEDQGIDEEPQLDSISQGFNPFPTIHLIDNKNITSSSSSSSYSNSNNKN
KNNNELKDILYKIYNEFINDHKKRVMNNNNNSKTLFIIDGLNLLESHYSTNPSGSNMDIL
NFLQYCHNYIKENSTTCSMIILYHSDCDADPKFFNLLQYESDLTINITGLKSGYSKDIDG
QLNFIQKDEKNNTFTRVNPIHYQALDNSIRFYQWVQEFNKVFFFFYNLKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
kngfi*sfklv*wrfye*rwrankeytkwkinisfryiri*rfifnslfftini*snnln
klinqq***q**wwcwwwcmfirieskfi*lf*cw*kiri*fnnri**r*fhiykwiint
i*mdn*tkittirgsry**rttirlnlsrf*sisnysfn***eyhflllllflfkl***k
*k***ikrhfi*nl**iyk*s*eksne****fkdfihy*wfkfireslfykskwfkygyf
klftils*lyqrefnnl*ydntls**l*crskil*ftsi*irfnnqynwfkiwlfkry*w
sikfytkr*kk*yiyks*snslssir*fn*ilsmgsriq*slffflqfkkk


Frame B:
KMDLFSHLNWYSGDFMNEDGEPIKSIPSGKLILVSDTLESEGSFLIHYFLQSIFKATTST
NSSTNNNNSNNSGGVGGGACLLGLNQSLYNYFNVGRKLGYNLTTEYNKGNFTFINGLSTP
YKWIIEQRLQQLEDQGIDEEPQLDSISQGFNPFPTIHLIDNKNITSSSSSSSYSNSNNKN
KNNNELKDILYKIYNEFINDHKKRVMNNNNNSKTLFIIDGLNLLESHYSTNPSGSNMDIL
NFLQYCHNYIKENSTTCSMIILYHSDCDADPKFFNLLQYESDLTINITGLKSGYSKDIDG
QLNFIQKDEKNNTFTRVNPIHYQALDNSIRFYQWVQEFNKVFFFFYNLKKK


Frame C:
kwiylvi*igivail*mkmasq*rvyqven*y*fqih*nlkvhf*fiifynqylkqqpqq
thqptiiiaiivvvlvvvhvy*d*ikvyiiilmlven*dii*qqniikvishl*mdyqhh
ing*lnkdynn*rikvlmknhn*tqslkvlihfqlfi*liirislppppplliqtliiki
kiimn*ktfyikfimnl*miirke**iiiiiqrlysllmv*iy*rviilqiqvvqiwif*
tfyniviiiskriqqlvv**yfiivivmpiqnsliyfnmnpi*qsi*lv*nlviqkilmv
n*ilykkmkkiihlqeliqfiikh*iiqldsingfknsiksffffti*kk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15179-1 (Contig-U15179-1Q)
/CSM_Contig/Contig-U15179-1Q.Seq.d
         (1054 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15179-1 (Contig-U15179-1Q) /CSM_Contig/Conti...   983  0.0
Contig-U12020-1 (Contig-U12020-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U11113-1 (Contig-U11113-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U06647-1 (Contig-U06647-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U15507-1 (Contig-U15507-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U16227-1 (Contig-U16227-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15513-1 (Contig-U15513-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11845-1 (Contig-U11845-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U02001-1 (Contig-U02001-1Q) /CSM_Contig/Conti...    42  0.002

>Contig-U15179-1 (Contig-U15179-1Q) /CSM_Contig/Contig-U15179-1Q.Seq.d
          Length = 1054

 Score =  983 bits (496), Expect = 0.0
 Identities = 496/496 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaatggatttatttagtcatttaaattggtatagtggcgattttatgaatgaagatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaatggatttatttagtcatttaaattggtatagtggcgattttatgaatgaagatgg 60

                                                                       
Query: 61  cgagccaataaagagtataccaagtggaaaattaatattagtttcagatacattagaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgagccaataaagagtataccaagtggaaaattaatattagtttcagatacattagaatc 120

                                                                       
Query: 121 tgaaggttcatttttaattcattattttttacaatcaatatttaaagcaacaacctcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaaggttcatttttaattcattattttttacaatcaatatttaaagcaacaacctcaac 180

                                                                       
Query: 181 aaactcatcaaccaacaataataatagcaataatagtggtggtgttggtggtggtgcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaactcatcaaccaacaataataatagcaataatagtggtggtgttggtggtggtgcatg 240

                                                                       
Query: 241 tttattaggattgaatcaaagtttatataattattttaatgttggtagaaaattaggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttattaggattgaatcaaagtttatataattattttaatgttggtagaaaattaggata 300

                                                                       
Query: 301 taatttaacaacagaatataataaaggtaatttcacatttataaatggattatcaacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taatttaacaacagaatataataaaggtaatttcacatttataaatggattatcaacacc 360

                                                                       
Query: 361 atataaatggataattgaacaaagattacaacaattagaggatcaaggtattgatgaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atataaatggataattgaacaaagattacaacaattagaggatcaaggtattgatgaaga 420

                                                                       
Query: 421 accacaattagactcaatctctcaaggttttaatccatttccaactattcatttaattga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 accacaattagactcaatctctcaaggttttaatccatttccaactattcatttaattga 480

                           
Query: 481 taataagaatatcact 496
           ||||||||||||||||
Sbjct: 481 taataagaatatcact 496


 Score =  874 bits (441), Expect = 0.0
 Identities = 455/462 (98%)
 Strand = Plus / Plus

                                                                        
Query: 563  gacattttatataaaatttataatgaatttataaatgatcataagaaaagagtaatgaat 622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563  gacattttatataaaatttataatgaatttataaatgatcataagaaaagagtaatgaat 622

                                                                        
Query: 623  aataataataattcaaagactttattcattattgatggtttaaatttattagagagtcat 682
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623  aataataataattcaaagactttattcattattgatggtttaaatttattagagagtcat 682

                                                                        
Query: 683  tattctacaaatccaagtggttcaaatatggatattttaaactttttacaatattgtcat 742
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683  tattctacaaatccaagtggttcaaatatggatattttaaactttttacaatattgtcat 742

                                                                        
Query: 743  aattatatcaaagagaattcaacaacttgtagtatgataatactttatcatagtgattgt 802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  aattatatcaaagagaattcaacaacttgtagtatgataatactttatcatagtgattgt 802

                                                                        
Query: 803  gatgccgatccaaaattctttaatttacttcaatatgaatccgatttaacaatcaatata 862
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  gatgccgatccaaaattctttaatttacttcaatatgaatccgatttaacaatcaatata 862

                                                                        
Query: 863  actggtttaaaatctggttattcaaaagatattgatggtcaattaaattttatacaaaaa 922
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  actggtttaaaatctggttattcaaaagatattgatggtcaattaaattttatacaaaaa 922

                                                                        
Query: 923  gatgnnnnnnntaatacatttacaagagttaatccaattcattatcaagcattagataat 982
            ||||       |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  gatgaaaaaaataatacatttacaagagttaatccaattcattatcaagcattagataat 982

                                                      
Query: 983  tcaattagattctatcaatgggttcaagaattcaataaagtc 1024
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  tcaattagattctatcaatgggttcaagaattcaataaagtc 1024


 Score = 30.2 bits (15), Expect = 6.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 132 ttttaattcattatt 146
           |||||||||||||||
Sbjct: 562 ttttaattcattatt 548


>Contig-U12020-1 (Contig-U12020-1Q) /CSM_Contig/Contig-U12020-1Q.Seq.d
          Length = 1440

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 197 aataataatagcaataatagtggtggtg 224
           |||||||||| |||||||||||||||||
Sbjct: 371 aataataatatcaataatagtggtggtg 398


>Contig-U11113-1 (Contig-U11113-1Q) /CSM_Contig/Contig-U11113-1Q.Seq.d
          Length = 2323

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 216 gtggtggtgttggtggtggtgca 238
           |||||||||||||||||||||||
Sbjct: 902 gtggtggtgttggtggtggtgca 880


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,751
Number of Sequences: 8402
Number of extensions: 51751
Number of successful extensions: 17310
Number of sequences better than 10.0: 2241
length of query: 1054
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1038
effective length of database: 7,941,110
effective search space: 8242872180
effective search space used: 8242872180
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.15
Homology vs DNA 
Query= Contig-U15179-1 (Contig-U15179-1Q) /CSM_Contig/Contig-U15179-1Q.Seq.d
         (1054 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF310884) Dictyostelium discoideum Rac1B (rac1B) gene, comp...   983   0.0    5
(AU284601) Dictyostelium discoideum gamete cDNA clone:FC-BE1...   983   0.0    4
(AC111428) Rattus norvegicus clone CH230-246F11, WORKING DRA...    64   1e-05  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    46   0.002  17
(AF088979) Dictyostelium discoideum beige protein homolog (l...    46   0.002  3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    38   0.002  11
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.002  17
(AC187854) Populus trichocarpa clone Pop1-11B14, complete se...    56   0.003  1
(AC107703) Mus musculus, clone RP23-472H1, complete sequence.      54   0.011  1
(AY023386) Oryza sativa microsatellite MRG5711 containing (T...    54   0.011  1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    54   0.011  1
(AP003854) Oryza sativa Japonica Group genomic DNA, chromoso...    54   0.011  1
(EA681118) Sequence 59997 from patent US 7365185.                  54   0.011  1
(AC101196) Mus musculus clone RP23-177G5, LOW-PASS SEQUENCE ...    54   0.011  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    40   0.016  14
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743...    44   0.017  5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    46   0.019  13
(X95275) Plasmodium falciparum complete gene map of plastid-...    32   0.020  7
(AY232269) Dictyostelium discoideum putative protein Roco7 (...    48   0.022  4
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   0.036  12
(CQ610448) Sequence 38206 from Patent WO0171042.                   52   0.045  1
(AE014298) Drosophila melanogaster chromosome X, complete se...    52   0.045  1
(AC104609) Drosophila melanogaster X BAC RP98-39F18 (Roswell...    52   0.045  1
(AC013022) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    52   0.045  1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   0.050  12
(AC178609) Strongylocentrotus purpuratus clone R3-3018N20, W...    46   0.051  7
(AC176053) Strongylocentrotus purpuratus clone R3-18P10, WOR...    46   0.053  6
(AC189389) Brassica rapa subsp. pekinensis clone KBrB053J19,...    36   0.057  7
(AC173788) Bos taurus clone CH240-103C13, WORKING DRAFT SEQU...    44   0.066  3
(AC139328) Mus musculus BAC clone RP24-299C21 from chromosom...    48   0.082  6
(AC184213) Strongylocentrotus purpuratus clone R3-25K5, WORK...    36   0.097  9
(AC123508) Rattus norvegicus clone CH230-80O8, *** SEQUENCIN...    38   0.11   2
(AC103481) Rattus norvegicus clone CH230-20A8, WORKING DRAFT...    38   0.11   2
(AC178225) Strongylocentrotus purpuratus clone R3-1116H1, WO...    40   0.12   6
(AU263164) Dictyostelium discoideum vegetative cDNA clone:VS...    46   0.13   2
(AC177302) Strongylocentrotus purpuratus clone R3-46B15, WOR...    42   0.14   4
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    36   0.17   11
(AC117682) Mus musculus chromosome 1, clone RP23-436K7, comp...    50   0.18   1
(CQ870467) Sequence 888 from Patent WO2004074320.                  50   0.18   1
(AC011966) Homo sapiens chromosome 15, clone RP11-285I14, co...    50   0.18   1
(AC170167) Mus musculus chromosome 1 clone RP24-388I5 map 1,...    50   0.18   1
(DX961123) CHORI105-10H11.TJ CHORI105.pTARBAC1.3 Trypanosoma...    50   0.18   1
(DX951704) CHORI105-45K16.TR CHORI105.pEpiFOS5 Trypanosoma c...    50   0.18   1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    44   0.19   11
(AE017308) Mycoplasma mobile 163K complete genome.                 36   0.22   18
(AC105813) Rattus norvegicus clone CH230-264I22, *** SEQUENC...    48   0.29   6
(AC068643) Homo sapiens 12 BAC RP11-552I14 (Roswell Park Can...    36   0.32   7
(AC079884) Rattus norvegicus strain Brown Norway chromosome ...    42   0.34   2
(AL844507) Plasmodium falciparum chromosome 8.                     38   0.34   13
(AC105527) Rattus norvegicus clone CH230-207N3, *** SEQUENCI...    48   0.34   8
(AJ277590) Dictyostelium discoideum iplA gene for inositol 1...    42   0.36   4
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    38   0.36   14
(AC198922) Populus trichocarpa clone Pop1-54I9, complete seq...    38   0.41   2
(CT990570) Zebrafish DNA sequence from clone DKEY-13A11 in l...    38   0.42   2
(CR352289) Zebrafish DNA sequence from clone CH211-13A5 in l...    38   0.42   2
(AM180355) Clostridium difficile 630 complete genome.              38   0.43   19
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    32   0.43   7
(BX897729) Zebrafish DNA sequence from clone DKEY-240A12 in ...    42   0.46   7
(BX294179) Zebrafish DNA sequence from clone DKEY-253G9.           42   0.50   7
(EB191876) PEG001-C-004854-501 Non-Normalized Pedal-Pleural ...    36   0.51   2
(EB192542) PEG001-C-004854-502 Non-Normalized Pedal-Pleural ...    36   0.52   2
(AC168460) Strongylocentrotus purpuratus clone R3-35H9, WORK...    40   0.56   5
(AC220791) Bos taurus clone CH240-346C1, WORKING DRAFT SEQUE...    38   0.57   6
(AC181647) Strongylocentrotus purpuratus clone R3-1101H12, W...    46   0.66   6
(CT010582) Mouse DNA sequence from clone RP23-385M20 on chro...    48   0.70   1
(AC197499) Mus musculus BAC clone RP24-388C23 from chromosom...    48   0.70   1
(AC108318) Rattus norvegicus 2 BAC CH230-256E18 (Children's ...    48   0.70   1
(CU041360) S.lycopersicum DNA sequence from clone SL_MboI-12...    48   0.70   1
(AC155803) Medicago truncatula clone mth2-103j6, complete se...    48   0.70   1
(CQ870473) Sequence 894 from Patent WO2004074320.                  48   0.70   1
(AX647501) Sequence 1693 from Patent EP1270724.                    48   0.70   1
(DQ369306) Hormopeza sp. JKM-2006 carbamoylphosphate synthet...    48   0.70   1
(DQ369301) Ocydromia sp. JKM-2006 carbamoylphosphate synthet...    48   0.70   1
(AY280690) Neurigona quadrifasciata CAD (r) gene, partial cds.     48   0.70   1
(AY280675) Bombylius major CAD (r) gene, partial cds.              48   0.70   1
(AF362369) Dictyostelium discoideum histidine kinase DhkG (d...    48   0.70   1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    48   0.70   1
(AP001972) Homo sapiens genomic DNA, chromosome 11q, clone:C...    48   0.70   1
(AC013447) Homo sapiens BAC clone RP11-543D5 from 1, complet...    48   0.70   1
(AC128443) Rattus norvegicus clone CH230-96H8, *** SEQUENCIN...    48   0.70   1
(AC123299) Rattus norvegicus clone CH230-352F24, *** SEQUENC...    48   0.70   1
(AC119638) Rattus norvegicus clone CH230-247O17, WORKING DRA...    48   0.70   1
(AC115459) Rattus norvegicus clone CH230-55M11, *** SEQUENCI...    48   0.70   1
(AC111774) Rattus norvegicus clone CH230-171G2, WORKING DRAF...    48   0.70   1
(AC094595) Rattus norvegicus clone CH230-4B19, WORKING DRAFT...    48   0.70   1
(AC233053) Solanum tuberosum chromosome 6 clone RHPOTKEY063H...    48   0.70   1
(AC224274) Bos taurus clone CH240-47O23, WORKING DRAFT SEQUE...    48   0.70   1
(AC219760) Bos taurus clone CH240-323H7, WORKING DRAFT SEQUE...    48   0.70   1
(AC185821) Bos taurus clone RP42-186K2, WORKING DRAFT SEQUEN...    48   0.70   1
(AC180709) Strongylocentrotus purpuratus clone R3-3084B23, W...    48   0.70   1
(AC180641) Strongylocentrotus purpuratus clone R3-3089M05, W...    48   0.70   1
(AC180239) Strongylocentrotus purpuratus clone R3-36B19, WOR...    48   0.70   1
(AC177059) Strongylocentrotus purpuratus clone R3-4004E15, W...    48   0.70   1
(AC176561) Strongylocentrotus purpuratus clone R3-3076J1, WO...    48   0.70   1
(AC176511) Strongylocentrotus purpuratus clone R3-3072P7, WO...    48   0.70   1
(AC176238) Strongylocentrotus purpuratus clone R3-3061C03, W...    48   0.70   1
(AC022045) Homo sapiens clone RP11-11G5, WORKING DRAFT SEQUE...    48   0.70   1
(BX031191) Single read from an extremity of a full-length cD...    48   0.70   1
(AZ892630) RPCI-24-168L4.TV RPCI-24 Mus musculus genomic clo...    48   0.70   1
(AZ644335) 1M0508C16F Mouse 10kb plasmid UUGC1M library Mus ...    48   0.70   1

>(AF310884) Dictyostelium discoideum Rac1B (rac1B) gene, complete cds;
            racK pseudogene, complete sequence; and unknown genes.
          Length = 3549

 Score =  983 bits (496), Expect(5) = 0.0
 Identities = 496/496 (100%)
 Strand = Plus / Minus


Query: 1    aaaaatggatttatttagtcatttaaattggtatagtggcgattttatgaatgaagatgg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3052 aaaaatggatttatttagtcatttaaattggtatagtggcgattttatgaatgaagatgg 2993


Query: 61   cgagccaataaagagtataccaagtggaaaattaatattagtttcagatacattagaatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2992 cgagccaataaagagtataccaagtggaaaattaatattagtttcagatacattagaatc 2933


Query: 121  tgaaggttcatttttaattcattattttttacaatcaatatttaaagcaacaacctcaac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2932 tgaaggttcatttttaattcattattttttacaatcaatatttaaagcaacaacctcaac 2873


Query: 181  aaactcatcaaccaacaataataatagcaataatagtggtggtgttggtggtggtgcatg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2872 aaactcatcaaccaacaataataatagcaataatagtggtggtgttggtggtggtgcatg 2813


Query: 241  tttattaggattgaatcaaagtttatataattattttaatgttggtagaaaattaggata 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2812 tttattaggattgaatcaaagtttatataattattttaatgttggtagaaaattaggata 2753


Query: 301  taatttaacaacagaatataataaaggtaatttcacatttataaatggattatcaacacc 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2752 taatttaacaacagaatataataaaggtaatttcacatttataaatggattatcaacacc 2693


Query: 361  atataaatggataattgaacaaagattacaacaattagaggatcaaggtattgatgaaga 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2692 atataaatggataattgaacaaagattacaacaattagaggatcaaggtattgatgaaga 2633


Query: 421  accacaattagactcaatctctcaaggttttaatccatttccaactattcatttaattga 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2632 accacaattagactcaatctctcaaggttttaatccatttccaactattcatttaattga 2573


Query: 481  taataagaatatcact 496
            ||||||||||||||||
Sbjct: 2572 taataagaatatcact 2557

 Score =  515 bits (260), Expect(5) = 0.0
 Identities = 275/280 (98%)
 Strand = Plus / Minus


Query: 635  tcaaagactttattcattattgatggtttaaatttattagagagtcattattctacaaat 694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2418 tcaaagactttattcattattgatggtttaaatttattagagagtcattattctacaaat 2359


Query: 695  ccaagtggttcaaatatggatattttaaactttttacaatattgtcataattatatcaaa 754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2358 ccaagtggttcaaatatggatattttaaactttttacaatattgtcataattatatcaaa 2299


Query: 755  gagaattcaacaacttgtagtatgataatactttatcatagtgattgtgatgccgatcca 814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||
Sbjct: 2298 gagaattcaacaacttgtagtatgataatactttatcatagtgattgtgatgaagattca 2239


Query: 815  aaattctttaatttacttcaatatgaatccgatttaacaatcaatataactggtttaaaa 874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2238 aaattctttaatttacttcaatatgaatccgatttaacaatcaatataactggtttaaaa 2179


Query: 875  tctggttattcaaaagatattgatggtcaattaaatttta 914
            |||||||||||||||||||||||||||||| ||| |||||
Sbjct: 2178 tctggttattcaaaagatattgatggtcaagtaagtttta 2139

 Score =  123 bits (62), Expect(5) = 0.0
 Identities = 62/62 (100%)
 Strand = Plus / Minus


Query: 934  taatacatttacaagagttaatccaattcattatcaagcattagataattcaattagatt 993
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 taatacatttacaagagttaatccaattcattatcaagcattagataattcaattagatt 1948


Query: 994  ct 995
            ||
Sbjct: 1947 ct 1946

 Score = 56.0 bits (28), Expect(5) = 0.0
 Identities = 28/28 (100%)
 Strand = Plus / Minus


Query: 997  tcaatgggttcaagaattcaataaagtc 1024
            ||||||||||||||||||||||||||||
Sbjct: 1943 tcaatgggttcaagaattcaataaagtc 1916

 Score = 30.2 bits (15), Expect(5) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 514  ttcttattcaaactc 528
            |||||||||||||||
Sbjct: 2539 ttcttattcaaactc 2525

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,253,911,354
Number of extensions: 79195361
Number of successful extensions: 7656479
Number of sequences better than 10.0: 388
Length of query: 1054
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1030
Effective length of database: 100,704,341,533
Effective search space: 103725471778990
Effective search space used: 103725471778990
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15179-1 (Contig-U15179-1Q) /CSM_Contig/Contig-U15179-1Q.Seq.d
         (1054 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9GPT6) RecName: Full=UPF0405 protein C3orf75 homolog;  &AF3108...   566   e-160
(B2RYG8) RecName: Full=UPF0405 protein C3orf75 homolog; AltName:...    62   4e-08
(Q8BK75) RecName: Full=UPF0405 protein C3orf75 homolog; AltName:...    60   2e-07
BT043278_1(BT043278|pid:none) Zea mays full-length cDNA clone ZM...    57   1e-06
AL049487_1(AL049487|pid:none) Arabidopsis thaliana DNA chromosom...    57   1e-06
BC000623_1(BC000623|pid:none) Homo sapiens chromosome 3 open rea...    56   2e-06
(Q0PNE2) RecName: Full=UPF0405 protein C3orf75; AltName: Full=Pr...    56   2e-06
AK319007_1(AK319007|pid:none) Arabidopsis thaliana AT4G10090 mRN...    55   4e-06
AK227863_1(AK227863|pid:none) Arabidopsis thaliana mRNA for hypo...    55   5e-06
AC084405_33(AC084405|pid:none) Oryza sativa chromosome 3 BAC OSJ...    54   7e-06
EU970944_1(EU970944|pid:none) Zea mays clone 354379 hypothetical...    53   2e-05
AK000218_1(AK000218|pid:none) Homo sapiens cDNA FLJ20211 fis, cl...    51   8e-05
AP008209_1117(AP008209|pid:none) Oryza sativa (japonica cultivar...    49   4e-04
AL929190_5(AL929190|pid:none) Zebrafish DNA sequence from clone ...    47   0.001
(Q28CX0) RecName: Full=UPF0405 protein C3orf75 homolog; AltName:...    45   0.006
CR855827_1(CR855827|pid:none) Xenopus tropicalis finished cDNA, ...    45   0.006
(Q0IHA2) RecName: Full=UPF0405 protein C3orf75 homolog; AltName:...    44   0.012
AE001362_120(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    43   0.016
BX293980_769(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi...    41   0.062
AE014188_192(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.11
BX293980_757(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi...    39   0.23
AE014188_435(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.68
AF063866_204(AF063866|pid:none) Melanoplus sanguinipes entomopox...    37   1.2
AL844509_625(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.2
S14556(S14556;S14548) asparagine-rich protein (clone 18C1) - mal...    37   1.2
AL844509_173(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.2
CP001056_163(CP001056|pid:none) Clostridium botulinum B str. Ekl...    37   1.2
AF325455_1(AF325455|pid:none) Plasmodium falciparum phosphatidyl...    37   1.5
AE001362_113(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.5
AL844504_221(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.0
AL844501_46(AL844501|pid:none) Plasmodium falciparum strain 3D7,...    36   2.0
AL929353_66(AL929353|pid:none) Plasmodium falciparum strain 3D7,...    36   2.0
AL031745_38(AL031745|pid:none) Plasmodium falciparum DNA from MA...    36   2.0
AE014188_492(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.6
CR940347_189(CR940347|pid:none) Theileria annulata strain Ankara...    36   2.6
BA000026_154(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    36   2.6
AC116987_19(AC116987|pid:none) Dictyostelium discoideum chromoso...    35   3.4
AL929357_73(AL929357|pid:none) Plasmodium falciparum strain 3D7,...    35   4.4
AL844509_266(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.4
AE014187_151(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.4
AF083031_92(AF083031|pid:none) Guillardia theta nucleomorph chro...    35   4.4
AL844504_150(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.8
(O97239) RecName: Full=Protein dopey homolog PFC0245c;  &AL03455...    35   5.8
AE014188_491(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   7.6
AL844509_678(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.9
AL844507_200(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.9
CP001333_204(CP001333|pid:none) Micromonas sp. RCC299 chromosome...    34   9.9
AL844507_15(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    34   9.9
AE014299_3087(AE014299|pid:none) Shewanella oneidensis MR-1, com...    34   9.9

>(Q9GPT6) RecName: Full=UPF0405 protein C3orf75 homolog;
           &AF310884_2(AF310884|pid:none)
          Length = 338

 Score =  566 bits (1458), Expect = e-160
 Identities = 282/331 (85%), Positives = 283/331 (85%)
 Frame = +2

Query: 5   MDLFSHLNWYSGDFMNEDGEPIKSIPSGKLILVSDTLESEGSFLIHYFLQSIFKAXXXXX 184
           MDLFSHLNWYSGDFMNEDGEPIKSIPSGKLILVSDTLESEGSFLIHYFLQSIFKA
Sbjct: 1   MDLFSHLNWYSGDFMNEDGEPIKSIPSGKLILVSDTLESEGSFLIHYFLQSIFKATTSTN 60

Query: 185 XXXXXXXXXXXXXXXXXACLLGLNQSLYNYFNVGRKLGYNLTTEYNKGNFTFINGLSTPY 364
                            ACLLGLNQSLYNYFNVGRKLGYNLTTEYNKGNFTFINGLSTPY
Sbjct: 61  SSTNNNNSNNSGGVGGGACLLGLNQSLYNYFNVGRKLGYNLTTEYNKGNFTFINGLSTPY 120

Query: 365 KWIIEQRLQQLEDQGIDEEPQLDSISQGFNPFPTIHLIDXXXXXXXXXXXXXXXXXXXXX 544
           KWIIEQRLQQLEDQGIDEEPQLDSISQGFNPFPTIHLID
Sbjct: 121 KWIIEQRLQQLEDQGIDEEPQLDSISQGFNPFPTIHLIDNKNITSSSSSSSYSNSNNKNK 180

Query: 545 XXXELKDILYKIYNEFINDHKKRVMNNNNNSKTLFIIDGLNLLESHYSTNPSGSNMDILN 724
              ELKDILYKIYNEFINDHKKRVMNNNNNSKTLFIIDGLNLLESHYSTNPSGSNMDILN
Sbjct: 181 NNNELKDILYKIYNEFINDHKKRVMNNNNNSKTLFIIDGLNLLESHYSTNPSGSNMDILN 240

Query: 725 FLQYCHNYIKENSTTCSMIILYHSDCDADPKFFNLLQYESDLTINITGLKSGYSKDIDGQ 904
           FLQYCHNYIKENSTTCSMIILYHSDCD D KFFNLLQYESDLTINITGLKSGYSKDIDGQ
Sbjct: 241 FLQYCHNYIKENSTTCSMIILYHSDCDEDSKFFNLLQYESDLTINITGLKSGYSKDIDGQ 300

Query: 905 LNFIQKDEKNNTFTRVNPIHYQALDNSIRFY 997
           LNFIQKDEKNNTFTRVNPIHYQALDNSIRF+
Sbjct: 301 LNFIQKDEKNNTFTRVNPIHYQALDNSIRFF 331

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,228,485,548
Number of extensions: 19920520
Number of successful extensions: 58997
Number of sequences better than 10.0: 49
Number of HSP's gapped: 57988
Number of HSP's successfully gapped: 56
Length of query: 351
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 222
Effective length of database: 633,664,753
Effective search space: 140673575166
Effective search space used: 140673575166
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.79  gvh: 0.50  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15179-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0