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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15162-1
Contig ID Contig-U15162-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15162-1 (Contig-U15162-1Q) /CSM_Contig/Contig-U15162-1Q.Seq.d
CACAACAATCTCCACAGCAATTTCAATCTCCACCACAAAATCAACAACCT
CAACTTTCAATACCGTATAAAAAGAGACATATCATTGATAGAAATATAAC
ATACATCGAAGAGACTCATATAAATAGTAATGATAGTGAACATGAATATA
ATGTAGAATATGATGATGATTATTATGATGATGATGACGATGATGATCAA
CCAGCTTTTAAAAAATTAAATAGCCTAAATAATAATAATAGTAATAACAA
CAATAATAATAATAACAATAACATTAATAACAATAATAGCAATGGATTTT
ATAATTACAATGGATAACTATAGTAATGTATATATAAATGGTAGTAGTAG
TAGTGGTAGTAATAATAATAATAATAATAATAATAATAACTCTTTTTATG
GAAATAACAACTTTGTAAACAGTAACCAAAATAACAATGGCCATCATCAT
AATAATCACCATCATAGTAGTGGTAGTAGTCACAATTTGAATGGAAATAC
AAATGGTTTCCCTTTTACTAATATTCAAAACTATAACCTCAATAGTAATA
ATAGTGGTAATAATAGTGGTAATAATAGTGGTAATAATAGTAATAATAAT
GGATATTATAATTTCAATAATAGCGGAAATCATCATAACAATTTTAGTAG
TGGAGGAAATCATAATCACAATAGTAATAGTAATAACAATAATAATAATG
GCAATAATAGTAATGGTAATGGTTTAGATTTTTACTCATTGTTGGATAAC
AAAAGAATTACTAAAAATTATTAAATAAAAAATATATTTCAATGTGTAAA
TACAAAAATTTTAAATTGTTTATCACATTTTCTCTTTTAAAAAAAAAAAA
AAAAAA
Gap no gap
Contig length 856
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U15162
List of clone(s) 

est1=FC-AY06E,1,856
Translated Amino Acid sequence 
hnnlhsnfnlhhkinnlnfqyrikrdisliei*htskrli*ivmivnmnim*nmmmiimm
mmtmminqllkn*ia*IIIIVITTIIIITITLITIIAMDFIITMDNYSNVYINGSSSSGS
NNNNNNNNNNSFYGNNNFVNSNQNNNGHHHNNHHHSSGSSHNLNGNTNGFPFTNIQNYNL
NSNNSGNNSGNNSGNNSNNNGYYNFNNSGNHHNNFSSGGNHNHNSNSNNNNNNGNNSNGN
GLDFYSLLDNKRITKNY*iknifqcvntkilnclshflf*kkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hnnlhsnfnlhhkinnlnfqyrikrdisliei*htskrli*ivmivnmnim*nmmmiimm
mmtmminqllkn*ia*IIIIVITTIIIITITLITIIAMDFIITMDNYSNVYINGSSSSGS
NNNNNNNNNNSFYGNNNFVNSNQNNNGHHHNNHHHSSGSSHNLNGNTNGFPFTNIQNYNL
NSNNSGNNSGNNSGNNSNNNGYYNFNNSGNHHNNFSSGGNHNHNSNSNNNNNNGNNSNGN
GLDFYSLLDNKRITKNY*iknifqcvntkilnclshflf*kkkkk


Frame B:
ttistaisisttksttstfntv*ketyh**kynihrrdsyk*****t*i*cri***ll**
**r**stsf*kik*pk******qq****q*h**q**qwil*lqwitivmyi*mvvvvvvv
iiiiiiiiitlfmeittl*tvtkitmaiiiiitiivvvvvti*meiqmvslllifktits
iviivviivviivviiviimdiiisiiaeiiitilvveeiiitivivitiiimaiivmvm
v*ifthcwitkellkiik*kiyfnv*iqkf*ivyhifsfkkkkkk


Frame C:
qqspqqfqsppqnqqpqlsipykkrhiidrnityieethinsndseheynveydddyydd
dddddqpafkklnslnnnnsnnnnnnnnnninnnnsngfynyng*l**ciykw****w**
*********lflwk*qlckq*pk*qwpss**sps**w**sqfewkykwfpfy*yskl*pq
****w***w***w******wil*fq**rkss*qf**wrks*sq*****q***wq***w*w
frfllivg*qkny*kllnkkyismckyknfklfitfsllkkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15162-1 (Contig-U15162-1Q)
/CSM_Contig/Contig-U15162-1Q.Seq.d
         (856 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15162-1 (Contig-U15162-1Q) /CSM_Contig/Conti...   307  2e-83
Contig-U15926-1 (Contig-U15926-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12770-1 (Contig-U12770-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11470-1 (Contig-U11470-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U16479-1 (Contig-U16479-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U16403-1 (Contig-U16403-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U15043-1 (Contig-U15043-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14365-1 (Contig-U14365-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U04430-1 (Contig-U04430-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U01219-1 (Contig-U01219-1Q) /CSM_Contig/Conti...    40  0.006

>Contig-U15162-1 (Contig-U15162-1Q) /CSM_Contig/Contig-U15162-1Q.Seq.d
          Length = 856

 Score =  307 bits (155), Expect = 2e-83
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                       
Query: 390 ctctttttatggaaataacaactttgtaaacagtaaccaaaataacaatggccatcatca 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctctttttatggaaataacaactttgtaaacagtaaccaaaataacaatggccatcatca 449

                                                                       
Query: 450 taataatcaccatcatagtagtggtagtagtcacaatttgaatggaaatacaaatggttt 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taataatcaccatcatagtagtggtagtagtcacaatttgaatggaaatacaaatggttt 509

                                              
Query: 510 cccttttactaatattcaaaactataacctcaata 544
           |||||||||||||||||||||||||||||||||||
Sbjct: 510 cccttttactaatattcaaaactataacctcaata 544


 Score =  254 bits (128), Expect = 2e-67
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaacaatctccacagcaatttcaatctccaccacaaaatcaacaacctcaactttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cacaacaatctccacagcaatttcaatctccaccacaaaatcaacaacctcaactttcaa 60

                                                                       
Query: 61  taccgtataaaaagagacatatcattgatagaaatataacatacatcgaagagactcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taccgtataaaaagagacatatcattgatagaaatataacatacatcgaagagactcata 120

                   
Query: 121 taaatagt 128
           ||||||||
Sbjct: 121 taaatagt 128


 Score =  234 bits (118), Expect = 2e-61
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 721 ggtttagatttttactcattgttggataacaaaagaattactaaaaattattaaataaaa 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggtttagatttttactcattgttggataacaaaagaattactaaaaattattaaataaaa 780

                                                                     
Query: 781 aatatatttcaatgtgtaaatacaaaaattttaaattgtttatcacattttctctttt 838
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aatatatttcaatgtgtaaatacaaaaattttaaattgtttatcacattttctctttt 838


 Score =  111 bits (56), Expect = 2e-24
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                   
Query: 601 ggatattataatttcaataatagcggaaatcatcataacaattttagtagtggagg 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggatattataatttcaataatagcggaaatcatcataacaattttagtagtggagg 656


 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                     
Query: 318 ctatagtaatgtatatataaatggtagtagtagtagtggtag 359
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctatagtaatgtatatataaatggtagtagtagtagtggtag 359


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 442 catcatcataataatcaccatcata 466
           ||||||||||||||||| |||||||
Sbjct: 183 catcatcataataatcatcatcata 159


>Contig-U15926-1 (Contig-U15926-1Q) /CSM_Contig/Contig-U15926-1Q.Seq.d
          Length = 2556

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 339 tggtagtagtagtagtggtag 359
           |||||||||||||||||||||
Sbjct: 432 tggtagtagtagtagtggtag 452


 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 464 atagtagtggtagtagt 480
           |||||||||||||||||
Sbjct: 425 atagtagtggtagtagt 441


 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 465 tagtagtggtagtagt 480
           ||||||||||||||||
Sbjct: 441 tagtagtggtagtagt 456


 Score = 30.2 bits (15), Expect = 5.3
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 341 gtagtagtagtagtggtag 359
           ||||| |||||||||||||
Sbjct: 443 gtagtggtagtagtggtag 461


>Contig-U12770-1 (Contig-U12770-1Q) /CSM_Contig/Contig-U12770-1Q.Seq.d
          Length = 514

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 339 tggtagtagtagtagtggtag 359
           |||||||||||||||||||||
Sbjct: 398 tggtagtagtagtagtggtag 418


 Score = 36.2 bits (18), Expect = 0.086
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 341 gtagtagtagtagtggta 358
           ||||||||||||||||||
Sbjct: 223 gtagtagtagtagtggta 240


 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 342 tagtagtagtagtggt 357
           ||||||||||||||||
Sbjct: 179 tagtagtagtagtggt 194


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,226
Number of Sequences: 8402
Number of extensions: 17226
Number of successful extensions: 2850
Number of sequences better than 10.0: 460
length of query: 856
length of database: 8,075,542
effective HSP length: 16
effective length of query: 840
effective length of database: 7,941,110
effective search space: 6670532400
effective search space used: 6670532400
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.13
Homology vs DNA 
Query= Contig-U15162-1 (Contig-U15162-1Q) /CSM_Contig/Contig-U15162-1Q.Seq.d
         (856 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C25694) Dictyostelium discoideum gamete cDNA, clone FC-AY06.     299   e-169  5
(CU463290) Pig DNA sequence from clone CH242-211E24 on chrom...    52   0.035  1
(CU695071) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.035  1
(AC173024) Bos taurus clone CH240-289A10, WORKING DRAFT SEQU...    40   0.083  2
(AC156078) Bos taurus clone CH240-52A9, WORKING DRAFT SEQUEN...    40   0.25   4
(EY327866) CAWY1292.fwd CAWY Helobdella robusta Subtracted E...    34   0.40   2
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    48   0.55   1
(AC162073) Bos taurus clone CH240-111I24, WORKING DRAFT SEQU...    48   0.55   1
(AC162002) Bos taurus clone CH240-108P17, WORKING DRAFT SEQU...    48   0.55   1
(AC157385) Bos taurus clone CH240-61K23, WORKING DRAFT SEQUE...    48   0.55   1
(AC155032) Bos taurus clone CH240-31K3, WORKING DRAFT SEQUEN...    48   0.55   1
(AC152210) Bos taurus clone CH240-2G6, WORKING DRAFT SEQUENC...    48   0.55   1
(AC150801) Bos taurus clone CH240-240G20, WORKING DRAFT SEQU...    48   0.55   1
(AL844509) Plasmodium falciparum chromosome 13.                    48   0.55   1
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    48   0.55   1
(AC230426) Bos taurus clone CH240-509A15, WORKING DRAFT SEQU...    48   0.55   1
(AC224502) Bos taurus clone CH240-483K14, WORKING DRAFT SEQU...    48   0.55   1
(AC224500) Bos taurus clone CH240-483I15, WORKING DRAFT SEQU...    48   0.55   1
(AC224125) Bos taurus clone CH240-449L22, WORKING DRAFT SEQU...    48   0.55   1
(AC223782) Bos taurus clone CH240-457O8, WORKING DRAFT SEQUE...    48   0.55   1
(AC223578) Bos taurus clone CH240-465G15, WORKING DRAFT SEQU...    48   0.55   1
(AC223536) Bos taurus clone CH240-466E7, WORKING DRAFT SEQUE...    48   0.55   1
(AC223265) Bos taurus clone CH240-423L14, WORKING DRAFT SEQU...    48   0.55   1
(AC223228) Bos taurus clone CH240-426C1, WORKING DRAFT SEQUE...    48   0.55   1
(AC222399) Bos taurus clone CH240-417F22, WORKING DRAFT SEQU...    48   0.55   1
(AC221840) Bos taurus clone CH240-382F5, WORKING DRAFT SEQUE...    48   0.55   1
(AC176127) Strongylocentrotus purpuratus clone R3-24O11, WOR...    48   0.55   1
(AC173364) Strongylocentrotus purpuratus clone R3-3061J20, W...    48   0.55   1
(AC172822) Bos taurus clone CH240-281F12, WORKING DRAFT SEQU...    48   0.55   1
(AC172523) Bos taurus clone CH240-300N23, WORKING DRAFT SEQU...    48   0.55   1
(AC171259) Bos taurus clone CH240-265K23, WORKING DRAFT SEQU...    48   0.55   1
(AC171049) Bos taurus clone CH240-261J2, WORKING DRAFT SEQUE...    48   0.55   1
(AC169107) Bos taurus clone CH240-216C14, WORKING DRAFT SEQU...    48   0.55   1
(AC168612) Strongylocentrotus purpuratus clone R3-3046H17, W...    48   0.55   1
(AC168327) Strongylocentrotus purpuratus clone R3-58P7, WORK...    48   0.55   1
(AC168180) Bos taurus clone CH240-211D11, WORKING DRAFT SEQU...    48   0.55   1
(AC168030) Bos taurus clone CH240-203K18, WORKING DRAFT SEQU...    48   0.55   1
(AC167764) Bos taurus clone CH240-195L23, WORKING DRAFT SEQU...    48   0.55   1
(AC165605) Bos taurus clone CH240-169N12, WORKING DRAFT SEQU...    48   0.55   1
(AC165115) Bos taurus clone CH240-163D4, WORKING DRAFT SEQUE...    48   0.55   1
(AC164213) Bos taurus clone CH240-152N6, *** SEQUENCING IN P...    48   0.55   1
(AC163792) Bos taurus clone CH240-148J18, WORKING DRAFT SEQU...    48   0.55   1
(AC163548) Bos taurus clone CH240-137I11, *** SEQUENCING IN ...    48   0.55   1
(CC498820) CH240_336O5.T7 CHORI-240 Bos taurus genomic clone...    48   0.55   1
(BZ935724) CH240_85L21.TJ CHORI-240 Bos taurus genomic clone...    48   0.55   1
(DW048047) CLLX14668.b1_G19.ab1 CLL(XYZ) lettuce saligna Lac...    48   0.55   1
(BQ858859) QGC11H02.yg.ab1 QG_ABCDI lettuce salinas Lactuca ...    48   0.55   1
(AC223545) Bos taurus clone CH240-466J10, WORKING DRAFT SEQU...    40   0.67   4
(BV640087) S215P60656FA6.T0 Clara Pan troglodytes troglodyte...    46   2.2    1
(CR382131) Yarrowia lipolytica chromosome E of strain CLIB 1...    46   2.2    1
(AC135658) Rattus norvegicus clone CH230-78A13, *** SEQUENCI...    46   2.2    1
(AC122961) Rattus norvegicus clone CH230-96E18, *** SEQUENCI...    46   2.2    1
(AC098225) Rattus norvegicus clone CH230-39B11, *** SEQUENCI...    46   2.2    1
(CR932357) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.2    1
(AC221692) Bos taurus clone CH240-388H14, WORKING DRAFT SEQU...    46   2.2    1
(AC181383) Strongylocentrotus purpuratus clone R3-4E13, WORK...    46   2.2    1
(AC176370) Strongylocentrotus purpuratus clone R3-3048I3, WO...    46   2.2    1
(EY367994) CAXA11557.rev CAXA Helobdella robusta Subtracted ...    46   2.2    1
(AC221492) Bos taurus clone CH240-409O2, WORKING DRAFT SEQUE...    40   3.5    2
(AC167797) Bos taurus clone CH240-195H10, WORKING DRAFT SEQU...    40   3.6    2
(AC220266) Bos taurus clone CH240-368A11, WORKING DRAFT SEQU...    40   3.8    2
(AC182926) Bos taurus clone CH240-281O5, WORKING DRAFT SEQUE...    40   4.0    2
(AC171825) Bos taurus clone CH240-528L19, WORKING DRAFT SEQU...    40   4.1    2
(AC222684) Bos taurus clone CH240-442F21, WORKING DRAFT SEQU...    40   4.4    3
(AC162012) Bos taurus clone CH240-108A17, WORKING DRAFT SEQU...    40   4.4    2
(AC222626) Bos taurus clone CH240-443I1, WORKING DRAFT SEQUE...    40   4.5    2
(AC182292) Bos taurus clone CH240-488C17, WORKING DRAFT SEQU...    40   4.9    3
(AC224482) Bos taurus clone CH240-483P21, WORKING DRAFT SEQU...    40   4.9    2
(AC222228) Bos taurus clone CH240-412K6, WORKING DRAFT SEQUE...    40   5.5    2
(BJ374597) Dictyostelium discoideum cDNA clone:ddc9n03, 3' e...    34   5.9    2
(AC216832) Bos taurus  BAC CH240-167M6 (Children's Hospital ...    44   8.6    1
(AM910985) Plasmodium knowlesi strain H chromosome 3, comple...    44   8.6    1
(AC078991) Homo sapiens Xp BAC RP11-459A10 (Roswell Park Can...    44   8.6    1
(AC150645) Bos taurus clone CH240-171A6, WORKING DRAFT SEQUE...    44   8.6    1
(AC110833) Rattus norvegicus clone CH230-189A5, *** SEQUENCI...    44   8.6    1
(AL844506) Plasmodium falciparum chromosome  7.                    44   8.6    1
(AC229881) Bos taurus clone CH240-404P11, WORKING DRAFT SEQU...    44   8.6    1
(AC226433) Bos taurus clone CH240-304N9, WORKING DRAFT SEQUE...    44   8.6    1
(AC222745) Bos taurus clone CH240-440E15, WORKING DRAFT SEQU...    44   8.6    1
(AC216761) Bos taurus clone CH240-157N13, WORKING DRAFT SEQU...    44   8.6    1
(AC215846) Bos taurus clone CH240-448H2, WORKING DRAFT SEQUE...    44   8.6    1
(AC213722) Bos taurus clone CH240-1P7, WORKING DRAFT SEQUENC...    44   8.6    1
(AC180082) Strongylocentrotus purpuratus clone R3-4008I18, W...    44   8.6    1
(AC178169) Strongylocentrotus purpuratus clone R3-3081N19, W...    44   8.6    1
(AC177790) Strongylocentrotus purpuratus clone R3-1002E13, W...    44   8.6    1
(AC176658) Strongylocentrotus purpuratus clone R3-3084G2, WO...    44   8.6    1
(AC175111) Bos taurus clone CH240-78M10, WORKING DRAFT SEQUE...    44   8.6    1
(AC164856) Bos taurus clone CH240-145I22, *** SEQUENCING IN ...    44   8.6    1
(ET260854) S0112K06_SP6 CHORI-214 Salmo salar genomic clone ...    44   8.6    1
(DU730231) Ynhw19017 HW-YUBAC Bos taurus genomic clone HW-YU...    44   8.6    1
(CR811952) GR0AAA36AA07FM1 INRA BAC Bos taurus genomic clone...    44   8.6    1
(CC562226) CH240_473C23.T7 CHORI-240 Bos taurus genomic clon...    44   8.6    1
(DV186089) CT058_F02_CT058_3700_90.ab1 C. tentans tissue cul...    44   8.6    1
(CB281384) ru94b11.y1 Heterodera glycines virgin female Hete...    44   8.6    1
(FD800936) CBGU414.fwd CBGU Volvox carteri f. nagariensis in...    44   8.6    1
(FC273437) CAGN20488.fwd CAGN Nematostella vectensis Nemve m...    44   8.6    1
(FC214187) CAGF2553.fwd CAGF Nematostella vectensis Nemve Ea...    44   8.6    1
(EV839579) TT1ET55TV Tetrahymena thermophila SB210 cDNA libr...    44   8.6    1
(EV831813) TT1DP09TV Tetrahymena thermophila SB210 cDNA libr...    44   8.6    1

>(C25694) Dictyostelium discoideum gamete cDNA, clone FC-AY06.
          Length = 856

 Score =  299 bits (151), Expect(5) = e-169
 Identities = 151/151 (100%)
 Strand = Plus / Plus


Query: 390 ctctttttatggaaataacaactttgtaaacagtaaccaaaataacaatggccatcatca 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctctttttatggaaataacaactttgtaaacagtaaccaaaataacaatggccatcatca 449


Query: 450 taataatcaccatcatagtagtggtagtagtcacaatttgaatggaaatacaaatggttt 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taataatcaccatcatagtagtggtagtagtcacaatttgaatggaaatacaaatggttt 509


Query: 510 cccttttactaatattcaaaactataacctc 540
           |||||||||||||||||||||||||||||||
Sbjct: 510 cccttttactaatattcaaaactataacctc 540

 Score =  236 bits (119), Expect(5) = e-169
 Identities = 119/119 (100%)
 Strand = Plus / Plus


Query: 1   cacaacaatctccacagcaatttcaatctccaccacaaaatcaacaacctcaactttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cacaacaatctccacagcaatttcaatctccaccacaaaatcaacaacctcaactttcaa 60


Query: 61  taccgtataaaaagagacatatcattgatagaaatataacatacatcgaagagactcat 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taccgtataaaaagagacatatcattgatagaaatataacatacatcgaagagactcat 119

 Score = 67.9 bits (34), Expect(5) = e-169
 Identities = 34/34 (100%)
 Strand = Plus / Plus


Query: 624 cggaaatcatcataacaattttagtagtggagga 657
           ||||||||||||||||||||||||||||||||||
Sbjct: 624 cggaaatcatcataacaattttagtagtggagga 657

 Score = 60.0 bits (30), Expect(5) = e-169
 Identities = 30/30 (100%)
 Strand = Plus / Plus


Query: 721 ggtttagatttttactcattgttggataac 750
           ||||||||||||||||||||||||||||||
Sbjct: 721 ggtttagatttttactcattgttggataac 750

 Score = 42.1 bits (21), Expect(5) = e-169
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 818 gtttatcacattttctctttt 838
           |||||||||||||||||||||
Sbjct: 818 gtttatcacattttctctttt 838

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 424,073,389
Number of extensions: 25483659
Number of successful extensions: 1926689
Number of sequences better than 10.0: 101
Length of query: 856
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 832
Effective length of database: 97,308,875,965
Effective search space: 80960984802880
Effective search space used: 80960984802880
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15162-1 (Contig-U15162-1Q) /CSM_Contig/Contig-U15162-1Q.Seq.d
         (856 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 457,343,997
Number of extensions: 4237607
Number of successful extensions: 6765
Number of sequences better than 10.0: 0
Number of HSP's gapped: 6763
Number of HSP's successfully gapped: 0
Length of query: 285
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 158
Effective length of database: 640,137,871
Effective search space: 101141783618
Effective search space used: 101141783618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.97  gvh: 0.49  alm: 0.10  top: 0.33  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U15162-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0