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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15148-1
Contig ID Contig-U15148-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15148-1 (Contig-U15148-1Q) /CSM_Contig/Contig-U15148-1Q.Seq.d
AAATTATTTATAACAATAACACCAAATTTAGAAAAATTATTACATAATGA
AATTAAAGATATTTTAAGAACAAATAAATTAACGTTACCAAAATTTCAAG
TTTTTGAAGGTGGTATTGAAATTGATTTAACAAAGGATCCAAATATAAGT
GAACAAGAAAAAGAATATTATTTATGGTCAATTTCAAATTGTAGTAGATT
AGCAGAATCGATTAGAATTAGAGTAGGTTTATCATTTCCATGTAAAAATT
TCAGTCAATTTAATATTAATTTAGAGAAATTAGATTATAAAACCTATTTT
CCAACATCATCAATCGAACCACAAGTGGCGGTTAGTTGTAATGCTTCAAC
ATTGTATCATACAAATGCAATTAAAGAAAGATTTATTAAACATTTTAATA
ATTCAATAAAAGATAAAATATCAATCGATATAAATTATTCAAAATTTA
Gap no gap
Contig length 448
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2803376
End point 2803823
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U15148
List of clone(s) 

est1=FC-AS09F,1,448
Translated Amino Acid sequence 
KLFITITPNLEKLLHNEIKDILRTNKLTLPKFQVFEGGIEIDLTKDPNISEQEKEYYLWS
ISNCSRLAESIRIRVGLSFPCKNFSQFNINLEKLDYKTYFPTSSIEPQVAVSCNASTLYH
TNAIKERFIKHFNNSIKDKISIDINYSKF
Translated Amino Acid sequence (All Frames) 
Frame A:
KLFITITPNLEKLLHNEIKDILRTNKLTLPKFQVFEGGIEIDLTKDPNISEQEKEYYLWS
ISNCSRLAESIRIRVGLSFPCKNFSQFNINLEKLDYKTYFPTSSIEPQVAVSCNASTLYH
TNAIKERFIKHFNNSIKDKISIDINYSKF


Frame B:
nyl*q*hqi*knyyimklkif*eqin*ryqnfkflkvvlkli*qriqi*vnkkkniiygq
fqivvd*qnrlele*vyhfhvkisvnlili*rn*iikpifqhhqsnhkwrlvvmlqhcii
qmqlkkdllniliiq*kikyqsi*iiqnl


Frame C:
iiynnntkfrkiit**n*ryfknk*invtkissf*rwy*n*fnkgskyk*trkrilfmvn
fkl**isrid*n*srfiism*kfqsi*y*freirl*nlfsniinrttsgg*l*cfnivsy
kcn*rkiy*tf**fnkr*ninryklfki
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15148-1 (Contig-U15148-1Q)
/CSM_Contig/Contig-U15148-1Q.Seq.d
         (448 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15148-1 (Contig-U15148-1Q) /CSM_Contig/Conti...   888  0.0
Contig-U02438-1 (Contig-U02438-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U15152-1 (Contig-U15152-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U02805-1 (Contig-U02805-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11887-1 (Contig-U11887-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U11465-1 (Contig-U11465-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U06961-1 (Contig-U06961-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U11303-1 (Contig-U11303-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U08617-1 (Contig-U08617-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U01260-1 (Contig-U01260-1Q) /CSM_Contig/Conti...    36  0.044

>Contig-U15148-1 (Contig-U15148-1Q) /CSM_Contig/Contig-U15148-1Q.Seq.d
          Length = 448

 Score =  888 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattatttataacaataacaccaaatttagaaaaattattacataatgaaattaaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaattatttataacaataacaccaaatttagaaaaattattacataatgaaattaaagat 60

                                                                       
Query: 61  attttaagaacaaataaattaacgttaccaaaatttcaagtttttgaaggtggtattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attttaagaacaaataaattaacgttaccaaaatttcaagtttttgaaggtggtattgaa 120

                                                                       
Query: 121 attgatttaacaaaggatccaaatataagtgaacaagaaaaagaatattatttatggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgatttaacaaaggatccaaatataagtgaacaagaaaaagaatattatttatggtca 180

                                                                       
Query: 181 atttcaaattgtagtagattagcagaatcgattagaattagagtaggtttatcatttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttcaaattgtagtagattagcagaatcgattagaattagagtaggtttatcatttcca 240

                                                                       
Query: 241 tgtaaaaatttcagtcaatttaatattaatttagagaaattagattataaaacctatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtaaaaatttcagtcaatttaatattaatttagagaaattagattataaaacctatttt 300

                                                                       
Query: 301 ccaacatcatcaatcgaaccacaagtggcggttagttgtaatgcttcaacattgtatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccaacatcatcaatcgaaccacaagtggcggttagttgtaatgcttcaacattgtatcat 360

                                                                       
Query: 361 acaaatgcaattaaagaaagatttattaaacattttaataattcaataaaagataaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acaaatgcaattaaagaaagatttattaaacattttaataattcaataaaagataaaata 420

                                       
Query: 421 tcaatcgatataaattattcaaaattta 448
           ||||||||||||||||||||||||||||
Sbjct: 421 tcaatcgatataaattattcaaaattta 448


>Contig-U02438-1 (Contig-U02438-1Q) /CSM_Contig/Contig-U02438-1Q.Seq.d
          Length = 1182

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   accaaatttagaaaaattatt 41
            |||||||||||||||||||||
Sbjct: 1035 accaaatttagaaaaattatt 1055


>Contig-U15152-1 (Contig-U15152-1Q) /CSM_Contig/Contig-U15152-1Q.Seq.d
          Length = 1670

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 27   tttagaaaaattattacataatgaaatt 54
            |||| ||||||||||||||| |||||||
Sbjct: 1631 tttaaaaaaattattacatattgaaatt 1604


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,737
Number of Sequences: 8402
Number of extensions: 17737
Number of successful extensions: 2012
Number of sequences better than 10.0: 244
length of query: 448
length of database: 8,075,542
effective HSP length: 16
effective length of query: 432
effective length of database: 7,941,110
effective search space: 3430559520
effective search space used: 3430559520
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.13
Homology vs DNA 
Query= Contig-U15148-1 (Contig-U15148-1Q) /CSM_Contig/Contig-U15148-1Q.Seq.d
         (448 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C24376) Dictyostelium discoideum gamete cDNA, clone FC-AS09.     888   0.0    1
(AE017263) Mesoplasma florum L1 complete genome.                   32   8e-05  15
(AL031744) Plasmodium falciparum DNA from MAL1P1.                  36   8e-04  7
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   0.001  9
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.002  9
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         32   0.002  17
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    34   0.004  16
(BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com...    36   0.011  18
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    38   0.012  9
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   0.014  10
(BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com...    36   0.014  18
(AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp...    36   0.014  18
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       36   0.016  9
(CP000736) Staphylococcus aureus subsp. aureus JH1, complete...    36   0.016  18
(CP000703) Staphylococcus aureus subsp. aureus JH9, complete...    36   0.016  18
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   0.019  12
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          32   0.020  12
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.025  9
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    44   0.026  14
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp...    36   0.029  18
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    46   0.029  16
(AM285301) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   0.034  6
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    36   0.036  9
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.039  10
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.039  17
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   0.042  15
(AC174959) Bos taurus clone CH240-11O7, WORKING DRAFT SEQUEN...    40   0.043  2
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    40   0.044  8
(EU556752) Tetranychus urticae strain MR-VL cytochrome b (cy...    34   0.045  3
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.052  9
(CP000046) Staphylococcus aureus subsp. aureus COL, complete...    36   0.052  17
(AC092329) Homo sapiens chromosome 19 clone RP11-15H20, comp...    40   0.056  6
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.064  9
(DU954310) 222463 Tomato MboI BAC Library Solanum lycopersic...    50   0.068  1
(CR339048) Zebrafish DNA sequence from clone DKEY-27L15 in l...    36   0.087  4
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    36   0.088  9
(CP000728) Clostridium botulinum F str. Langeland, complete ...    38   0.089  18
(AJ938182) Staphylococcus aureus RF122 complete genome.            36   0.10   17
(AC144730) Medicago truncatula clone mth2-5j23, WORKING DRAF...    34   0.11   6
(EJ640770) 1093011490162 Global-Ocean-Sampling_GS-29-01-01-1...    42   0.12   2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.12   13
(BX571857) Staphylococcus aureus strain MSSA476, complete ge...    36   0.13   17
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    34   0.13   13
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co...    36   0.14   17
(EU556753) Tetranychus urticae strain MR-VP cytochrome b (cy...    32   0.16   3
(EU556751) Tetranychus urticae strain GSS cytochrome b (cytb...    32   0.16   3
(EU556750) Tetranychus urticae strain HOL4 cytochrome b (cyt...    32   0.16   3
(EU556749) Tetranychus urticae strain HOL3 cytochrome b (cyt...    32   0.16   3
(EU556748) Tetranychus urticae strain HOL2 cytochrome b (cyt...    32   0.16   3
(EU556747) Tetranychus urticae strain HOL1 cytochrome b (cyt...    32   0.16   3
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375...    36   0.17   17
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151...    36   0.17   17
(AP009351) Staphylococcus aureus subsp. aureus str. Newman D...    36   0.17   17
(Z92850) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE...    36   0.18   7
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   0.19   13
(AC198105) Nomascus leucogenys BAC clone CH271-100L3 from ch...    34   0.20   6
(EY134366) CBTH4460.g1_G12.ab1:P Triphysaria pusilla root ti...    34   0.20   2
(EY134365) CBTH4460.b1_G12.ab1:P Triphysaria pusilla root ti...    34   0.20   2
(AC141114) Medicago truncatula clone mth2-8g20, complete seq...    34   0.20   7
(AB236337) Clostridium perfringens F5603 plasmid pCPF5603 DN...    32   0.21   7
(AL355796) Human DNA sequence from clone RP11-46B11 on chrom...    44   0.22   5
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.24   10
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   0.25   9
(AL844506) Plasmodium falciparum chromosome  7.                    34   0.25   13
(BX571856) Staphylococcus aureus subsp. aureus strain MRSA25...    36   0.26   18
(AC006754) Caenorhabditis elegans clone Y40B10, *** SEQUENCI...    38   0.26   6
(CP000487) Campylobacter fetus subsp. fetus 82-40, complete ...    34   0.27   16
(AC190156) Pan troglodytes BAC clone CH251-487F13 from chrom...    48   0.27   1
(AC145899) Pan troglodytes BAC clone RP43-19O5 from chromoso...    48   0.27   1
(AC152573) Bos taurus clone CH240-13C10, WORKING DRAFT SEQUE...    48   0.27   1
(EK339556) 1095467056185 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.27   1
(EK087643) 1092961169240 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.27   1
(EK026057) 1092955366660 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.27   1
(EI808828) MUGQ_CH252P256K17Sp6_CN524_069 CHORI-252 Vervet M...    48   0.27   1
(EV837395) TT1DV81TV Tetrahymena thermophila SB210 cDNA libr...    48   0.27   1
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    32   0.27   6
(AL034557) Plasmodium falciparum MAL4P1.                           34   0.28   10
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    30   0.29   10
(DQ832718) Phytophthora ramorum mitochondrion, complete genome.    40   0.29   5
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr...    40   0.29   5
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    30   0.30   12
(AC199990) Nomascus leucogenys leucogenys clone CH271-368K21...    40   0.31   5
(CR940352) Theileria annulata genomic DNA chromosome 3.            36   0.33   14
(AZ790582) 2M0039I12F Mouse 10kb plasmid UUGC1M library Mus ...    36   0.33   2
(AY077835) Goatpox virus Pellor, complete genome.                  34   0.34   8
(AY077836) Goatpox virus G20-LKV, complete genome.                 34   0.34   8
(BZ473765) BONCR67TF BO_1.6_2_KB_tot Brassica oleracea genom...    40   0.35   2
(AC151708) Medicago truncatula clone mth2-15h5, complete seq...    34   0.36   5
(CU407094) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   0.36   8
(BX649620) Zebrafish DNA sequence from clone DKEY-11N14 in l...    38   0.37   3
(DX391560) GE__Sa0045C10.b1 Gossypium exiguum WGS library Go...    36   0.38   3
(EJ656195) 1092955006898 Global-Ocean-Sampling_GS-30-02-01-1...    30   0.39   4
(AL035476) Plasmodium falciparum MAL4P3.                           38   0.40   8
(EU024653) Polistes sp. MD1 mitochondrion, partial genome.         32   0.40   5
(CP000013) Borrelia garinii PBi, complete genome.                  34   0.41   14
(AE000783) Borrelia burgdorferi B31, complete genome.              32   0.44   14
(EJ177345) 1092344105960 Global-Ocean-Sampling_GS-27-01-01-1...    32   0.44   3
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    38   0.46   14
(AC157533) Pan troglodytes BAC clone CH251-276N1 from chromo...    40   0.46   4
(AA800520) EST190017 Normalized rat lung, Bento Soares Rattu...    36   0.50   2

>(C24376) Dictyostelium discoideum gamete cDNA, clone FC-AS09.
          Length = 448

 Score =  888 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Plus


Query: 1   aaattatttataacaataacaccaaatttagaaaaattattacataatgaaattaaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaattatttataacaataacaccaaatttagaaaaattattacataatgaaattaaagat 60


Query: 61  attttaagaacaaataaattaacgttaccaaaatttcaagtttttgaaggtggtattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attttaagaacaaataaattaacgttaccaaaatttcaagtttttgaaggtggtattgaa 120


Query: 121 attgatttaacaaaggatccaaatataagtgaacaagaaaaagaatattatttatggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgatttaacaaaggatccaaatataagtgaacaagaaaaagaatattatttatggtca 180


Query: 181 atttcaaattgtagtagattagcagaatcgattagaattagagtaggtttatcatttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttcaaattgtagtagattagcagaatcgattagaattagagtaggtttatcatttcca 240


Query: 241 tgtaaaaatttcagtcaatttaatattaatttagagaaattagattataaaacctatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtaaaaatttcagtcaatttaatattaatttagagaaattagattataaaacctatttt 300


Query: 301 ccaacatcatcaatcgaaccacaagtggcggttagttgtaatgcttcaacattgtatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccaacatcatcaatcgaaccacaagtggcggttagttgtaatgcttcaacattgtatcat 360


Query: 361 acaaatgcaattaaagaaagatttattaaacattttaataattcaataaaagataaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acaaatgcaattaaagaaagatttattaaacattttaataattcaataaaagataaaata 420


Query: 421 tcaatcgatataaattattcaaaattta 448
           ||||||||||||||||||||||||||||
Sbjct: 421 tcaatcgatataaattattcaaaattta 448

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 713,763,943
Number of extensions: 49967592
Number of successful extensions: 4487946
Number of sequences better than 10.0: 409
Length of query: 448
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 425
Effective length of database: 93,106,754,628
Effective search space: 39570370716900
Effective search space used: 39570370716900
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15148-1 (Contig-U15148-1Q) /CSM_Contig/Contig-U15148-1Q.Seq.d
         (448 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014185_256(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    50   2e-05
AM055943_176(AM055943|pid:none) Toxoplasma gondii RH, genomic DN...    44   0.002
AM910988_109(AM910988|pid:none) Plasmodium knowlesi strain H chr...    41   0.012
AM180355_1836(AM180355|pid:none) Clostridium difficile 630 compl...    36   0.37
AP009153_383(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DNA...    36   0.37
Z69902_11(Z69902|pid:none) Caenorhabditis elegans Cosmid C47D12,...    36   0.49
FJ430564_18(FJ430564|pid:none) Bacillus cereus strain UW85 zwitt...    36   0.49
(P52709) RecName: Full=Threonyl-tRNA synthetase, cytoplasmic;   ...    36   0.49
CP000387_1766(CP000387|pid:none) Streptococcus sanguinis SK36, c...    34   1.8
CP001129_1513(CP001129|pid:none) Streptococcus equi subsp. zooep...    33   3.1
CR940348_878(CR940348|pid:none) Theileria annulata strain Ankara...    33   3.1
AP008230_4065(AP008230|pid:none) Desulfitobacterium hafniense Y5...    33   4.1
CP000312_1913(CP000312|pid:none) Clostridium perfringens SM101, ...    32   5.4
CP000921_391(CP000921|pid:none) Streptococcus pneumoniae Taiwan1...    32   7.0
CP001015_333(CP001015|pid:none) Streptococcus pneumoniae G54, co...    32   7.0
BT001848_1(BT001848|pid:none) Drosophila melanogaster RH56418 fu...    32   7.0
AE005672_356(AE005672|pid:none) Streptococcus pneumoniae TIGR4, ...    32   7.0
AE007317_333(AE007317|pid:none) Streptococcus pneumoniae R6, com...    32   7.0
CP000936_452(CP000936|pid:none) Streptococcus pneumoniae Hungary...    32   7.0
FM211187_334(FM211187|pid:none) Streptococcus pneumoniae ATCC 70...    32   7.0
CP000407_411(CP000407|pid:none) Streptococcus suis 05ZYH33, comp...    32   7.0
AE014134_2248(AE014134|pid:none) Drosophila melanogaster chromos...    32   7.0
AK341622_1(AK341622|pid:none) Acyrthosiphon pisum ACYPI004137 mR...    32   9.1
FJ002987_1(FJ002987|pid:none) Paramecium sonneborni strain AP59 ...    32   9.1
AB037166_5(AB037166|pid:none) Clostridium botulinum genes for OR...    32   9.1
CP000725_584(CP000725|pid:none) Streptococcus gordonii str. Chal...    32   9.1

>AE014185_256(AE014185|pid:none) Plasmodium falciparum 3D7
           chromosome 10, complete sequence.
           &AE014833_27(AE014833|pid:none)
          Length = 588

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = +1

Query: 136 DPNISEQEKEYYLWSISNCSRLAESIRIRVGLSFPCKNFSQFNINLEKLDYKTYFPTSSI 315
           D NI  +   YYL+ +   SR  E IR+ V  S+ C   + F  +++K+++  Y P SS+
Sbjct: 79  DKNIEIESDLYYLYKLLINSRTIEQIRLEVYRSY-CAYENNFINDMKKINWNAYIPFSSV 137

Query: 316 --EPQVAVSCNASTLYHTNAIK 375
             EP+++++   S LYHT  IK
Sbjct: 138 LKEPEISITSIKSRLYHTCMIK 159

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 623,558,606
Number of extensions: 11137893
Number of successful extensions: 32416
Number of sequences better than 10.0: 26
Number of HSP's gapped: 32406
Number of HSP's successfully gapped: 26
Length of query: 149
Length of database: 1,051,180,864
Length adjustment: 111
Effective length of query: 38
Effective length of database: 691,922,815
Effective search space: 26293066970
Effective search space used: 26293066970
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.50  gvh: 0.17  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.60  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: peroxisomal
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U15148-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0