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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15147-1
Contig ID Contig-U15147-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15147-1 (Contig-U15147-1Q) /CSM_Contig/Contig-U15147-1Q.Seq.d
CATATTTATAAAAAAAAAAAAAAAAATAAATAAGTAATTATAGGATGTTA
TCAAGAGCAACTAGATTATTATCTACAAAAAATGTTGTTGTAAACTCAAT
TGTAAAACACACTACCATTCGTTCATTTGCAAGTCATGGTGGTGGTGAAG
CAGGTGGTGCTTATCCAACTGAACCTGAAGCAGGTACACAAATGATTACA
AGAAGAGTAGAATTTGGTGACGCAGTCTATTCATACAAACACGGAAATTT
TATTGTTGATCCAATTCAAATTAGAGAATTAGCAGAAGAACAACAACAAC
AACAACATCATGTTCATGGTCCAGGTTGTTCACATGGCCATCATCACGAT
AGTCACGCAAACGATGGTCACCATGATGAACACCATGATGAACACCACGA
TCATGTTAATCCAGATGATGTTGAAGATGAATTCCCAAGAGGTTACTTTT
TAAATACACCACCATCAGTACCATACCCAATGAATCCATACTATTTAACA
GCTCTTTGTTTACTTCCAATCATTGGTTCATTATTTTCAATACGTTATTT
TGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATACTTGG
AAGCAAATCCAGCACTCAAACAAAAATATTACGATATCACCCACAAATAT
CCATTATCTCATTAAATTCGATAAATAATTTTTTAAAAAAATAATACATA
TAAAAAGAATAATAATACAGTTAAAGTAATACAGAAATTGTAGAAAATAT
TCAAAACTCAAAAATTTAAAAAAAAAAAAAAAAATAAAAAAGAAAAGATA
AAGGAAGAAACATAGAGTATTGTAATAAAAAAAAAAAAAACAAATAAAAA
GAAAAAAAAAAATTTATATATAAAAGAA
Gap no gap
Contig length 878
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1045868
End point 1044991
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 4
Link to clone list U15147
List of clone(s) 

est1=SSK578E,1,878
est2=FC-AS05E,10,786
est3=SSF511Z,174,775
est4=FC-AV08E,424,844
Translated Amino Acid sequence 
yl*kkkkk*ISNYRMLSRATRLLSTKNVVVNSIVKHTTIRSFASHGGGEAGGAYPTEPEA
GTQMITRRVEFGDAVYSYKHGNFIVDPIQIRELAEEQQQQQHHVHGPGCSHGHHHDSHAN
DGHHDEHHDEHHDHVNPDDVEDEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSI
RYFDNKSENDYELFRSEYLEANPALKQKYYDITHKYPLSH*ir*iif*knntykknnntv
kviqkl*kifktqkfkkkkknkkekikeet*sivikkkktnkkkkknlyike
Translated Amino Acid sequence (All Frames) 
Frame A:
hiykkkkknk*viigcyqeqldyylqkmll*tql*ntlpfvhlqvmvvvkqvvliqlnlk
qvhk*lqee*nlvtqsihtnteillliqfklen*qknnnnnnimfmvqvvhmaiitivtq
tmvtmmntmmnttimliqmmlkmnsqevtf*ihhhqyhtq*ihti*qlfvyfqslvhyfq
yviliinqktimnyleantwkqiqhsnknitisptnihylikfdk*ffkkiihikriiiq
lk*yrncrkysklknlkkkkkikkkr*rkkhrvl**kkkkqikrkkkiyi*k


Frame B:
ifikkkkkink*l*dviksn*iiiykkcccklnckthyhsfickswww*srwclsn*t*s
rytndykksriw*rslfiqtrkfyc*snsn*risrrttttttscswsrlftwpssr*srk
rwsp**tp**tprsc*sr*c*r*ipkrllfkyttistipnesilfnsslftsnhwfiifn
tlf***irkrl*ii*krilgsksstqtkilryhpqisiislnsinnflkk*yi*ke**ys
*snteiveniqnski*kkkkk*krkdkgrnieycnkkkknk*kekkkfiykr


Frame C:
yl*kkkkk*ISNYRMLSRATRLLSTKNVVVNSIVKHTTIRSFASHGGGEAGGAYPTEPEA
GTQMITRRVEFGDAVYSYKHGNFIVDPIQIRELAEEQQQQQHHVHGPGCSHGHHHDSHAN
DGHHDEHHDEHHDHVNPDDVEDEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSI
RYFDNKSENDYELFRSEYLEANPALKQKYYDITHKYPLSH*ir*iif*knntykknnntv
kviqkl*kifktqkfkkkkknkkekikeet*sivikkkktnkkkkknlyike
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15147-1 (Contig-U15147-1Q)
/CSM_Contig/Contig-U15147-1Q.Seq.d
         (878 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15147-1 (Contig-U15147-1Q) /CSM_Contig/Conti...   700  0.0
Contig-U16419-1 (Contig-U16419-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11587-1 (Contig-U11587-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U02603-1 (Contig-U02603-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U13509-1 (Contig-U13509-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U01935-1 (Contig-U01935-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U15867-1 (Contig-U15867-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U13989-1 (Contig-U13989-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U13796-1 (Contig-U13796-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U12425-1 (Contig-U12425-1Q) /CSM_Contig/Conti...    34  0.35

>Contig-U15147-1 (Contig-U15147-1Q) /CSM_Contig/Contig-U15147-1Q.Seq.d
          Length = 878

 Score =  700 bits (353), Expect = 0.0
 Identities = 353/353 (100%)
 Strand = Plus / Plus

                                                                       
Query: 308 tcatgttcatggtccaggttgttcacatggccatcatcacgatagtcacgcaaacgatgg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcatgttcatggtccaggttgttcacatggccatcatcacgatagtcacgcaaacgatgg 367

                                                                       
Query: 368 tcaccatgatgaacaccatgatgaacaccacgatcatgttaatccagatgatgttgaaga 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcaccatgatgaacaccatgatgaacaccacgatcatgttaatccagatgatgttgaaga 427

                                                                       
Query: 428 tgaattcccaagaggttactttttaaatacaccaccatcagtaccatacccaatgaatcc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaattcccaagaggttactttttaaatacaccaccatcagtaccatacccaatgaatcc 487

                                                                       
Query: 488 atactatttaacagctctttgtttacttccaatcattggttcattattttcaatacgtta 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atactatttaacagctctttgtttacttccaatcattggttcattattttcaatacgtta 547

                                                                       
Query: 548 ttttgataataaatcagaaaacgattatgaattatttagaagcgaatacttggaagcaaa 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttttgataataaatcagaaaacgattatgaattatttagaagcgaatacttggaagcaaa 607

                                                                
Query: 608 tccagcactcaaacaaaaatattacgatatcacccacaaatatccattatctc 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tccagcactcaaacaaaaatattacgatatcacccacaaatatccattatctc 660


 Score =  519 bits (262), Expect = e-147
 Identities = 262/262 (100%)
 Strand = Plus / Plus

                                                                       
Query: 27  taaataagtaattataggatgttatcaagagcaactagattattatctacaaaaaatgtt 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27  taaataagtaattataggatgttatcaagagcaactagattattatctacaaaaaatgtt 86

                                                                       
Query: 87  gttgtaaactcaattgtaaaacacactaccattcgttcatttgcaagtcatggtggtggt 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gttgtaaactcaattgtaaaacacactaccattcgttcatttgcaagtcatggtggtggt 146

                                                                       
Query: 147 gaagcaggtggtgcttatccaactgaacctgaagcaggtacacaaatgattacaagaaga 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gaagcaggtggtgcttatccaactgaacctgaagcaggtacacaaatgattacaagaaga 206

                                                                       
Query: 207 gtagaatttggtgacgcagtctattcatacaaacacggaaattttattgttgatccaatt 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gtagaatttggtgacgcagtctattcatacaaacacggaaattttattgttgatccaatt 266

                                 
Query: 267 caaattagagaattagcagaag 288
           ||||||||||||||||||||||
Sbjct: 267 caaattagagaattagcagaag 288


 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                     
Query: 718 cagttaaagtaatacagaaattgtagaaaatattcaaaactc 759
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 cagttaaagtaatacagaaattgtagaaaatattcaaaactc 759


 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 797 gataaaggaagaaacatagagtattgtaat 826
           ||||||||||||||||||||||||||||||
Sbjct: 797 gataaaggaagaaacatagagtattgtaat 826


 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 863 tttatatataaaagaa 878
           ||||||||||||||||
Sbjct: 863 tttatatataaaagaa 878


>Contig-U16419-1 (Contig-U16419-1Q) /CSM_Contig/Contig-U16419-1Q.Seq.d
          Length = 2413

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 246 aattttattgttgatccaattcaaatta 273
           ||||||||| || |||||||||||||||
Sbjct: 161 aattttatttttaatccaattcaaatta 188


>Contig-U11587-1 (Contig-U11587-1Q) /CSM_Contig/Contig-U11587-1Q.Seq.d
          Length = 2537

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 455  tacaccaccatcagtaccat 474
            ||||||||||||||||||||
Sbjct: 1833 tacaccaccatcagtaccat 1814


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,622
Number of Sequences: 8402
Number of extensions: 12622
Number of successful extensions: 1234
Number of sequences better than 10.0: 132
length of query: 878
length of database: 8,075,542
effective HSP length: 16
effective length of query: 862
effective length of database: 7,941,110
effective search space: 6845236820
effective search space used: 6845236820
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.13
Homology vs DNA 
Query= Contig-U15147-1 (Contig-U15147-1Q) /CSM_Contig/Contig-U15147-1Q.Seq.d
         (878 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C24335) Dictyostelium discoideum gamete cDNA, clone FC-AS05.     704   0.0    2
(C92857) Dictyostelium discoideum slug cDNA, clone SSF511.        704   0.0    2
(C94240) Dictyostelium discoideum slug cDNA, clone SSK578.        704   0.0    3
(AU284435) Dictyostelium discoideum gamete cDNA clone:FC-AV0...   474   e-129  1
(AU074396) Dictyostelium discoideum slug cDNA, clone SSK578.      424   e-114  1
(EK365231) 1095469394383 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.11   2
(AC113857) Rattus norvegicus clone CH230-258I11, WORKING DRA...    48   0.56   1
(DH099802) Oryzias latipes Fosmid clone:GOLWFno345_j07, forw...    48   0.56   1
(CB337223) Tc027G06R Tribolium castaneum embryonic cDNA libr...    48   0.56   1
(CB335197) Tc004E01R Tribolium castaneum embryonic cDNA libr...    48   0.56   1
(CB335186) Tc004D02R Tribolium castaneum embryonic cDNA libr...    48   0.56   1
(FI019846) CHO_OF6926xm05r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   1.5    2
(EL714815) CBSU9989.fwd NICHD_XGC_tropLimb_m Xenopus (Silura...    36   1.5    2
(EL714814) CBSU9989.rev NICHD_XGC_tropLimb_m Xenopus (Silura...    36   1.5    2
(FG641164) TT-24_N11 K326 trichome library Nicotiana tabacum...    44   1.6    2
(BI743351) kx41h10.y1 Parastrongyloides trichosuri FL pAMP1 ...    36   1.6    2
(EB681513) KL4B.113L10F.060131T7 KL4B Nicotiana tabacum cDNA...    44   1.7    2
(ET737819) CHO_OF135xj11f1.ab1 CHO_OF Nicotiana tabacum geno...    44   1.8    2
(CX162728) 90688.1 Mixed Leaf Solanum tuberosum cDNA clone 9...    44   1.8    2
(EK126168) 1092984300343 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.2    1
(EK125289) 1092974801486 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.2    1
(EJ402320) 1093012063761 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.2    1
(DW993696) EST46077 Larval Stage 1 Aedes aegypti cDNA clone ...    46   2.2    1
(DW988160) EST40541 Larval Stage 1 Aedes aegypti cDNA clone ...    46   2.2    1
(DW207983) EST24247 Larval Stage 1 Aedes aegypti cDNA clone ...    46   2.2    1
(DW202226) EST18496 Larval Stage 1 Aedes aegypti cDNA clone ...    46   2.2    1
(FD427153) Atr01b_32_H08_C010.g1 FGP Male Amborella trichopo...    46   2.2    1
(AW818473) RC1-ST0278-020300-015-h02 ST0278 Homo sapiens cDN...    42   3.1    2
(Z68003) Caenorhabditis elegans Cosmid E02H4.                      44   3.5    3
(AC155977) Xenopus tropicalis clone CH216-60E17, complete se...    32   4.2    2
(AL035476) Plasmodium falciparum MAL4P3.                           42   5.8    5
(AC023852) Homo sapiens chromosome 8 clone RP11-106J22 map 8...    38   8.6    3
(AC183881) Loxodonta africana clone VMRC15-357B10, WORKING D...    44   8.8    1
(FH108130) CHO_OF3214xi10f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   8.8    1
(EJ843279) 1093017843480 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.8    1
(CZ542825) SRAA-aad46d06.g1 Strongyloides ratti whole genome...    44   8.8    1
(CZ291564) cp76d09.r Candida parapsilosis Random Genomic Lib...    44   8.8    1
(CW321289) 104_814_11475468_148_35937_038 Sorghum methylatio...    44   8.8    1
(CW321288) 104_814_11475468_116_35933_038 Sorghum methylatio...    44   8.8    1
(CW253890) 104_717_11225355_148_35108_004 Sorghum methylatio...    44   8.8    1
(EH698352) CCIS10174.b1_L23.ab1 CCI(LMS) chicory Cichorium i...    44   8.8    1
(EY123909) NADL-aaa08g11.b1 Rhodnius_prolixus_EST_NADL_RpcDN...    44   8.8    1
(EY123642) NADL-aaa08g11.g1 Rhodnius_prolixus_EST_NADL_RpcDN...    44   8.8    1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    44   8.8    1

>(C24335) Dictyostelium discoideum gamete cDNA, clone FC-AS05.
          Length = 776

 Score =  704 bits (355), Expect(2) = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Plus


Query: 308 tcatgttcatggtccaggttgttcacatggccatcatcacgatagtcacgcaaacgatgg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcatgttcatggtccaggttgttcacatggccatcatcacgatagtcacgcaaacgatgg 358


Query: 368 tcaccatgatgaacaccatgatgaacaccacgatcatgttaatccagatgatgttgaaga 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcaccatgatgaacaccatgatgaacaccacgatcatgttaatccagatgatgttgaaga 418


Query: 428 tgaattcccaagaggttactttttaaatacaccaccatcagtaccatacccaatgaatcc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgaattcccaagaggttactttttaaatacaccaccatcagtaccatacccaatgaatcc 478


Query: 488 atactatttaacagctctttgtttacttccaatcattggttcattattttcaatacgtta 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atactatttaacagctctttgtttacttccaatcattggttcattattttcaatacgtta 538


Query: 548 ttttgataataaatcagaaaacgattatgaattatttagaagcgaatacttggaagcaaa 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttttgataataaatcagaaaacgattatgaattatttagaagcgaatacttggaagcaaa 598


Query: 608 tccagcactcaaacaaaaatattacgatatcacccacaaatatccattatctcat 662
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tccagcactcaaacaaaaatattacgatatcacccacaaatatccattatctcat 653

 Score =  519 bits (262), Expect(2) = 0.0
 Identities = 262/262 (100%)
 Strand = Plus / Plus


Query: 27  taaataagtaattataggatgttatcaagagcaactagattattatctacaaaaaatgtt 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18  taaataagtaattataggatgttatcaagagcaactagattattatctacaaaaaatgtt 77


Query: 87  gttgtaaactcaattgtaaaacacactaccattcgttcatttgcaagtcatggtggtggt 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  gttgtaaactcaattgtaaaacacactaccattcgttcatttgcaagtcatggtggtggt 137


Query: 147 gaagcaggtggtgcttatccaactgaacctgaagcaggtacacaaatgattacaagaaga 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gaagcaggtggtgcttatccaactgaacctgaagcaggtacacaaatgattacaagaaga 197


Query: 207 gtagaatttggtgacgcagtctattcatacaaacacggaaattttattgttgatccaatt 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gtagaatttggtgacgcagtctattcatacaaacacggaaattttattgttgatccaatt 257


Query: 267 caaattagagaattagcagaag 288
           ||||||||||||||||||||||
Sbjct: 258 caaattagagaattagcagaag 279

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 757,346,304
Number of extensions: 45050413
Number of successful extensions: 3493952
Number of sequences better than 10.0: 45
Length of query: 878
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 854
Effective length of database: 97,308,875,965
Effective search space: 83101780074110
Effective search space used: 83101780074110
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15147-1 (Contig-U15147-1Q) /CSM_Contig/Contig-U15147-1Q.Seq.d
         (878 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QN4) RecName: Full=Uncharacterized transmembrane protein DDB...   305   1e-81
AY338732_1(AY338732|pid:none) Avian infectious bronchitis virus ...    34   5.7
EU637854_1(EU637854|pid:none) Infectious bronchitis virus strain...    34   7.4
CP001055_1360(CP001055|pid:none) Elusimicrobium minutum Pei191, ...    33   9.7

>(Q54QN4) RecName: Full=Uncharacterized transmembrane protein
           DDB_G0283731;
          Length = 206

 Score =  305 bits (782), Expect = 1e-81
 Identities = 157/206 (76%), Positives = 157/206 (76%)
 Frame = +3

Query: 45  MLSRATRLLSTKNVVVNSIVKHTTIRSFASHGGGEAGGAYPTEPEAGTQMITRRVEFGDA 224
           MLSRATRLLSTKNVVVNSIVKHTTIRSFASHGGGEAGGAYPTEPEAGTQMITRRVEFGDA
Sbjct: 1   MLSRATRLLSTKNVVVNSIVKHTTIRSFASHGGGEAGGAYPTEPEAGTQMITRRVEFGDA 60

Query: 225 VYSYKHGNFIVDPIQIRELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 404
           VYSYKHGNFIVDPIQIRELA
Sbjct: 61  VYSYKHGNFIVDPIQIRELAEEQQQQQHHVHGPGCSHGHHHDSHANDGHHDEHHDEHHDH 120

Query: 405 XXXXXXXXXFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSIRYFDNKSENDYELF 584
                    FPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSIRYFDNKSENDYELF
Sbjct: 121 VNPDDVEDEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSIRYFDNKSENDYELF 180

Query: 585 RSEYLEANPALKQKYYDITHKYPLSH 662
           RSEYLEANPALKQKYYDITHKYPLSH
Sbjct: 181 RSEYLEANPALKQKYYDITHKYPLSH 206

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 829,969,671
Number of extensions: 12407698
Number of successful extensions: 44998
Number of sequences better than 10.0: 4
Number of HSP's gapped: 44990
Number of HSP's successfully gapped: 5
Length of query: 292
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 165
Effective length of database: 640,137,871
Effective search space: 105622748715
Effective search space used: 105622748715
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.64  gvh: 0.34  alm: 0.29  top: 0.73  tms: 0.07  mit: 0.50  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U15147-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 2
FC-IC (SUB) 0