Contig-U02923-1
Contig ID Contig-U02923-1
Contig update 2001. 8.29
Contig sequence
>Contig-U02923-1 (Contig-U02923-1Q) /CSM_Contig/Contig-U02923-1Q.Seq.d
AGAAAAAAGCATCTTTTGGTAAAGAATTTCANCAAAANNCAATAATTCAT
TGTTGTTATGTTTATTCTTTTGANNCAACTTTCTTTGGAACCAGTGATGG
TAATATTTTAGTTTTTAAAGCAAATAATTTAATTCAATTAATTAAATTAT
CACCCAATAATCAAATACAACANCANCANCANCANCAACAATTCTCTCCA
ATATTTACAATTTCACCCTACAATAGTAAAGATGAAAGAAAAATAATTCA
ATTTTCAATTCAACAATTATTATTTCAACAACAACATCATCAACAACAAC
AATTATTACAACAACAGTCTCAACAACAACCAAACCCAACCAATTCAACA
ACAGACTCAACAACCAAACCTACCTACCCAAACAATTCAACAACAGCAAT
TACAACAACAACAACAACAACAACAACAGCAACAATCTATACAAACAATA
CAGCAACAATTAAATGGTAATATTGGAAATTTTAATAATAGTGGTAGTAC
AGGTGCTAGTGGTGGTGCTAGTGCAAGTGCTAGTGCTAGTAATATAGTTT
CCAGTTTTAGAAAAAGTGGATTTTTTGTTGCTTTT

Gap no gap
Contig length 585
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2009572
End point 2008987
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U02923
List of clone(s)

est1=AFK618Z,1,586
Translated Amino Acid sequence
KKASFGKEFXQXXIIHCCYVYSFXXTFFGTSDGNILVFKANNLIQLIKLSPNNQIQXXXX
XQQFSPIFTISPYNSKDERKIIQFSIQQLLFQQQHHQQQQLLQQQSQQQPNPTNSTTDST
TKPTYPNNSTTAITTTTTTTTTATIYTNNTATIKW*ywkf***w*yrc*wwc*ckc*c**
ysfqf*kkwifccf


Translated Amino Acid sequence (All Frames)
Frame A:
rkkhllvknfxkxq*fivvmfillxqlslepvmvif*flkqii*fn*lnyhpiikynxxx
xxnnslqylqfhptivkmkek*fnfqfnnyyfnnniinnnnyynnslnnnqtqpiqqqtq
qpnlptqtiqqqqlqqqqqqqqqqqsiqtiqqqlngnignfnnsgstgasggasasasas
nivssfrksgffvaf


Frame B:
eksifw*risxkxnnslllclff*xnflwnq*w*yfsf*sk*fnsin*iitq*snttxxx
xxtilsniynftlq**r*kknnsifnstiiistttsstttiitttvstttkpnqfnnrln
nqtylpkqfnnsnynnnnnnnnsnnlykqysnn*mvileiliivvvqvlvvvlvqvlvlv
i*fpvlekvdflll


Frame C:
KKASFGKEFXQXXIIHCCYVYSFXXTFFGTSDGNILVFKANNLIQLIKLSPNNQIQXXXX
XQQFSPIFTISPYNSKDERKIIQFSIQQLLFQQQHHQQQQLLQQQSQQQPNPTNSTTDST
TKPTYPNNSTTAITTTTTTTTTATIYTNNTATIKW*ywkf***w*yrc*wwc*ckc*c**
ysfqf*kkwifccf


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U02923-1 (Contig-U02923-1Q)
/CSM_Contig/Contig-U02923-1Q.Seq.d
(585 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U02923-1 (Contig-U02923-1Q) /CSM_Contig/Conti... 448 e-126
Contig-U12715-1 (Contig-U12715-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U11109-1 (Contig-U11109-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U06954-1 (Contig-U06954-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U05407-1 (Contig-U05407-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U14478-1 (Contig-U14478-1Q) /CSM_Contig/Conti... 36 0.041
Contig-U11845-1 (Contig-U11845-1Q) /CSM_Contig/Conti... 36 0.041
Contig-U11707-1 (Contig-U11707-1Q) /CSM_Contig/Conti... 36 0.041
Contig-U11694-1 (Contig-U11694-1Q) /CSM_Contig/Conti... 36 0.041
Contig-U11303-1 (Contig-U11303-1Q) /CSM_Contig/Conti... 36 0.041

>Contig-U02923-1 (Contig-U02923-1Q) /CSM_Contig/Contig-U02923-1Q.Seq.d
Length = 585

Score = 448 bits (226), Expect = e-126
Identities = 256/256 (100%)
Strand = Plus / Plus


Query: 1 agaaaaaagcatcttttggtaaagaatttcancaaaanncaataattcattgttgttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaaaaaagcatcttttggtaaagaatttcancaaaanncaataattcattgttgttatg 60


Query: 61 tttattcttttganncaactttctttggaaccagtgatggtaatattttagtttttaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttattcttttganncaactttctttggaaccagtgatggtaatattttagtttttaaag 120


Query: 121 caaataatttaattcaattaattaaattatcacccaataatcaaatacaacancancanc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaataatttaattcaattaattaaattatcacccaataatcaaatacaacancancanc 180


Query: 181 ancancaacaattctctccaatatttacaatttcaccctacaatagtaaagatgaaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ancancaacaattctctccaatatttacaatttcaccctacaatagtaaagatgaaagaa 240


Query: 241 aaataattcaattttc 256
||||||||||||||||
Sbjct: 241 aaataattcaattttc 256


Score = 250 bits (126), Expect = 1e-66
Identities = 126/126 (100%)
Strand = Plus / Plus


Query: 460 ttaaatggtaatattggaaattttaataatagtggtagtacaggtgctagtggtggtgct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttaaatggtaatattggaaattttaataatagtggtagtacaggtgctagtggtggtgct 519


Query: 520 agtgcaagtgctagtgctagtaatatagtttccagttttagaaaaagtggattttttgtt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agtgcaagtgctagtgctagtaatatagtttccagttttagaaaaagtggattttttgtt 579


Query: 580 gctttt 585
||||||
Sbjct: 580 gctttt 585


Score = 30.2 bits (15), Expect = 2.5
Identities = 24/27 (88%)
Strand = Plus / Minus


Query: 124 ataatttaattcaattaattaaattat 150
||||||||||| | | |||||||||||
Sbjct: 150 ataatttaattaattgaattaaattat 124


>Contig-U12715-1 (Contig-U12715-1Q) /CSM_Contig/Contig-U12715-1Q.Seq.d
Length = 422

Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 465 tggtaatattggaaattttaataata 490
|||||||||| |||||||||||||||
Sbjct: 246 tggtaatattagaaattttaataata 271


>Contig-U11109-1 (Contig-U11109-1Q) /CSM_Contig/Contig-U11109-1Q.Seq.d
Length = 1337

Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 502 ggtgctagtggtggtgctagtg 523
||||||||||||||||||||||
Sbjct: 554 ggtgctagtggtggtgctagtg 575


Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 509 gtggtggtgctagtg 523
|||||||||||||||
Sbjct: 549 gtggtggtgctagtg 563


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9013
Number of Sequences: 6905
Number of extensions: 9013
Number of successful extensions: 1125
Number of sequences better than 10.0: 330
length of query: 585
length of database: 5,674,871
effective HSP length: 16
effective length of query: 569
effective length of database: 5,564,391
effective search space: 3166138479
effective search space used: 3166138479
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.24
Homology vs DNA
Query= Contig-U02923-1 (Contig-U02923-1Q) /CSM_Contig/Contig-U02923-1Q.Seq.d
(585 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ343095) Dictyostelium discoideum cDNA clone:dda22c06, 3' ... 307 e-173 3
(M73809) Plasmodium falciparum strain 311 merozoite surface ... 56 0.002 1
(EU810494) Plasmodium falciparum isolate 085_N15 merozoite s... 56 0.002 1
(EU810462) Plasmodium falciparum isolate 053_F55 merozoite s... 56 0.002 1
(EU647468) Plasmodium falciparum isolate 19 merozoite surfac... 56 0.002 1
(EU647460) Plasmodium falciparum isolate 22 merozoite surfac... 56 0.002 1
(DQ168571) Plasmodium falciparum isolate wos50 merozoite sur... 56 0.002 1
(DQ153256) Plasmodium falciparum isolate AR2 merozoite surfa... 56 0.002 1
(DQ115967) Plasmodium falciparum isolate AR1 merozoite surfa... 56 0.002 1
(AY375168) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1
(AY331640) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1
(AY331637) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1
(AY331635) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1
(AY331623) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1
(AY331619) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1
(AY331614) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1
(AY331601) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1
(AY137763) Plasmodium falciparum isolate IVc merozoite surfa... 56 0.002 1
(AF329581) Plasmodium falciparum genotype 3 from Solomon Isl... 56 0.002 1
(AF329578) Plasmodium falciparum genotype 1 from Malawi mero... 56 0.002 1
(AF329541) Plasmodium falciparum genotype 3 from Papua New G... 56 0.002 1
(DW201801) EST18071 Larval Stage 1 Aedes aegypti cDNA clone ... 40 0.006 2
(AF217015) Plasmodium falciparum isolate 65-58A merozoite su... 50 0.021 2
(FL606023) CAIG4094.fwd CAIG Postia placenta in rich medium ... 52 0.024 1
(FL606022) CAIG4094.rev CAIG Postia placenta in rich medium ... 52 0.024 1
(EU518806) Manihot violacea accD gene and accD-psaI intergen... 50 0.096 1
(EU518805) Manihot tristis accD gene and accD-psaI intergeni... 50 0.096 1
(EU518804) Manihot triphylla accD gene and accD-psaI interge... 50 0.096 1
(EU518803) Manihot sparsifolia accD gene and accD-psaI inter... 50 0.096 1
(EU518801) Manihot purpureocostata accD gene and accD-psaI i... 50 0.096 1
(EU518799) Manihot pilosa accD gene and accD-psaI intergenic... 50 0.096 1
(EU518798) Manihot pentaphylla accD gene and accD-psaI inter... 50 0.096 1
(EU518797) Manihot peltata accD gene and accD-psaI intergeni... 50 0.096 1
(EU518796) Manihot irwinii accD gene and accD-psaI intergeni... 50 0.096 1
(EU518792) Manihot esculenta subsp. peruviana accD gene and ... 50 0.096 1
(EU518791) Manihot esculenta subsp. esculenta accD gene and ... 50 0.096 1
(EU518789) Manihot chlorosticta accD gene and accD-psaI inte... 50 0.096 1
(EU518788) Manihot cecropiifolia accD gene and accD-psaI int... 50 0.096 1
(EU518784) Manihot anomala accD gene and accD-psaI intergeni... 50 0.096 1
(EU518783) Manihot alutacea accD gene and accD-psaI intergen... 50 0.096 1
(EU117376) Manihot esculenta cultivar TME3 chloroplast, comp... 50 0.096 1
(AP010521) Lotus japonicus genomic DNA, chromosome 6, clone:... 50 0.096 1
(U72957) Plasmodium falciparum merozoite surface protein 2 (... 50 0.096 1
(L22688) Plasmodium falciparum merozoite surface antigen 2 g... 50 0.096 1
(EU810598) Plasmodium falciparum isolate 189_TSY1690 merozoi... 50 0.096 1
(EU810597) Plasmodium falciparum isolate 188_TSY1285 merozoi... 50 0.096 1
(EU810596) Plasmodium falciparum isolate 187_TSY1280 merozoi... 50 0.096 1
(EU810588) Plasmodium falciparum isolate 179_TSY1092 merozoi... 50 0.096 1
(EU810533) Plasmodium falciparum isolate 124_TM154 merozoite... 50 0.096 1
(EU810521) Plasmodium falciparum isolate 112_TM109 merozoite... 50 0.096 1
(EU810461) Plasmodium falciparum isolate 052_F51 merozoite s... 50 0.096 1
(EU810457) Plasmodium falciparum isolate 048_F12 merozoite s... 50 0.096 1
(DQ166542) Plasmodium falciparum isolate wos58 merozoite sur... 50 0.096 1
(AJ318755) Plasmodium falciparum partial 3D7-wos41 gene for ... 50 0.096 1
(AJ318754) Plasmodium falciparum partial 3D7-wos44 gene for ... 50 0.096 1
(AJ318753) Plasmodium falciparum partial 3D7-wos42 gene for ... 50 0.096 1
(AJ318752) Plasmodium falciparum partial 3D7-wos43 gene for ... 50 0.096 1
(AF399999) Plasmodium falciparum isolate HN66 merozoite surf... 50 0.096 1
(AF329567) Plasmodium falciparum genotype 19 from Papua New ... 50 0.096 1
(AF329543) Plasmodium falciparum genotype 4/3D7 from Papua N... 50 0.096 1
(AF104717) Plasmodium falciparum isolate VN14 merozoite surf... 50 0.096 1
(AB116615) Plasmodium falciparum msp2 gene for merozoite sur... 50 0.096 1
(DX282338) OR_ABa0182J14.f OR_ABa Oryza ridleyi genomic clon... 50 0.096 1
(DB941719) Manihot esculenta mRNA, clone: CAS01_010_A18, 3'end. 50 0.096 1
(AC053484) Homo sapiens chromosome 12 clone RP11-20E24, WORK... 36 0.22 2
(AC107032) Homo sapiens 12 BAC RP11-613M5 (Roswell Park Canc... 36 0.22 2
(AC023961) Homo sapiens chromosome 12 clone RP11-613M5 map 1... 36 0.22 2
(AG727387) Macaca fuscata fuscata DNA, clone: MSB2-181H19_F,... 36 0.28 2
(CR382139) Debaryomyces hansenii strain CBS767 chromosome G ... 48 0.38 1
(EU810587) Plasmodium falciparum isolate 178_TSY682 merozoit... 48 0.38 1
(EU810510) Plasmodium falciparum isolate 101_TM54 merozoite ... 48 0.38 1
(DQ166541) Plasmodium falciparum isolate wos57 merozoite sur... 48 0.38 1
(DQ166538) Plasmodium falciparum isolate wos53 merozoite sur... 48 0.38 1
(AY534507) Plasmodium falciparum merozoite surface protein 2... 48 0.38 1
(AC168074) Bos taurus clone CH240-210K15, WORKING DRAFT SEQU... 48 0.38 1
(CZ532154) SRAA-aac77b06.b1 Strongyloides ratti whole genome... 48 0.38 1
(EH411819) RTHAIR1_73_A11.g1_A002 Sorghum bicolor BTx623 Roo... 48 0.38 1
(EG724765) GTE00007083 Guillardia theta non-normalised Guill... 48 0.38 1
(EG718241) GTE00003807 Guillardia theta non-normalised Guill... 48 0.38 1
(BG411756) OV2_37_F09.g1_A002 Ovary 2 (OV2) Sorghum bicolor ... 48 0.38 1
(AW745958) WS1_38_B04.g1_A002 Water-stressed 1 (WS1) Sorghum... 48 0.38 1
(EY809850) PT11-C1-900-001-A02-CT.F Poncirus trifoliata leaf... 48 0.38 1
(EX818211) CBNA5973.fwd CBNA Phycomyces blakesleeanus NRRL15... 48 0.38 1
(AM180088) Haloquadratum walsbyi DSM 16790 complete genome. 48 0.38 1
(AF329549) Plasmodium falciparum genotype 8 from Papua New G... 38 0.41 2
(EK427080) 1095516039253 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.85 2
(EJ145113) 1092343698669 Global-Ocean-Sampling_GS-27-01-01-1... 42 0.86 2
(FE878247) XYM17530.rev XYM Monosiga brevicollis rapidly gro... 34 1.1 2
(AX348509) Sequence 17 from Patent WO0202809. 42 1.3 2
(CR847881) Zebrafish DNA sequence from clone DKEY-277E10 in ... 46 1.5 1
(BV239176) S234P6243FB12.T0 EnglishShepherd Canis familiaris... 46 1.5 1
(AC146599) Mus musculus BAC clone RP24-128L9 from 6, complet... 46 1.5 1
(AC122240) Mus musculus BAC clone RP23-145L9 from 6, complet... 46 1.5 1
(U91674) Plasmodium falciparum isolate V375, merozoite surfa... 46 1.5 1
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1. 46 1.5 1
(FH245957) CHO_OF3007xk04r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 1.5 1
(ET983630) CHO_OF699xl16r1.ab1 CHO_OF Nicotiana tabacum geno... 46 1.5 1
(EK175603) 1095458096165 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1
(DH441558) Macropus eugenii DNA with T7 primer, fosmid clone... 46 1.5 1
(DE829998) Monosiga ovata DNA, BAC clone: MOBS-004J10_R, 3'end. 46 1.5 1
(BX227917) Danio rerio genomic clone DKEY-244L7, genomic sur... 46 1.5 1
(BX124359) Danio rerio genomic clone DKEY-73E19, genomic sur... 46 1.5 1
(EH777378) CNSM9682.b1_C21.ab1 CNS(LMS) yellow starthistle C... 46 1.5 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 46 1.5 1
(CP000033) Lactobacillus acidophilus NCFM, complete genome. 46 1.5 1
(AC213151) Populus trichocarpa clone POP014-H20, complete se... 38 1.7 6
(AM488960) Vitis vinifera contig VV78X259221.3, whole genome... 38 2.7 2
(FC644411) CAXU7157.rev CAXU Lottia gigantea from female gon... 38 2.7 2
(AC160660) Bos taurus clone CH240-95L1, WORKING DRAFT SEQUEN... 32 2.9 2
(AC167985) Bos taurus clone CH240-215K19, WORKING DRAFT SEQU... 32 2.9 2
(AC163376) Bos taurus clone CH240-126B14, WORKING DRAFT SEQU... 32 2.9 2
(ED323811) AUAC-aaf06d04.b1 Ascaris suum whole genome shotgu... 34 4.0 2
(ED198863) AUAC-aao93e04.b1 Ascaris suum whole genome shotgu... 34 4.1 2
(AC114041) Rattus norvegicus clone CH230-187A1, WORKING DRAF... 38 5.7 5
(CU929038) Zebrafish DNA sequence from clone CH1073-184K22 i... 44 5.9 1
(BX539308) Zebrafish DNA sequence from clone DKEYP-84C8 in l... 44 5.9 1
(AC153945) Mus musculus 10 BAC RP24-501G17 (Roswell Park Can... 44 5.9 1
(AC153137) Mus musculus BAC clone RP23-471J16 from chromosom... 44 5.9 1
(AC122501) Mus musculus BAC clone RP24-410D23 from chromosom... 44 5.9 1
(AC121911) Mus musculus BAC clone RP24-181L3 from chromosome... 44 5.9 1
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ... 44 5.9 1
(AM489336) Vitis vinifera contig VV78X236196.3, whole genome... 44 5.9 1
(AM439595) Vitis vinifera contig VV78X168610.8, whole genome... 44 5.9 1
(AJ003165) Populus trichocarpa cv. Trichobel ABI3 gene. 44 5.9 1
(AC124951) Medicago truncatula chromosome 6 clone mth2-7p23,... 44 5.9 1
(DJ386697) Diagnosis of Diseases Associated with Metastasis. 44 5.9 1
(AX348857) Sequence 315 from Patent WO0202807. 44 5.9 1
(AX281493) Sequence 157 from Patent WO0177376. 44 5.9 1
(Z98853) Caenorhabditis elegans Cosmid R08A2. 44 5.9 1
(U81000) Dictyostelium discoideum unknown protein mRNA, prom... 44 5.9 1
(EF710647) Glyptapanteles flavicoxis clone BAC 9N7, complete... 44 5.9 1
(DQ317108) Drosophila mojavensis Dscam gene, exons 3 through... 44 5.9 1
(DQ141107) Drosophila mojavensis Dscam gene, partial sequence. 44 5.9 1
(AY375169) Plasmodium falciparum merozoite surface protein 2... 44 5.9 1
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 44 5.9 1
(CR759834) Human DNA sequence from clone DAMC-220I8 on chrom... 44 5.9 1
(AL662852) Human DNA sequence from clone XXbac-228J24 on chr... 44 5.9 1
(AL645937) Human DNA sequence from clone XXbac-171B11 on chr... 44 5.9 1
(AC137551) Homo sapiens chromosome 5 clone RP11-867C24, comp... 44 5.9 1
(AC136590) Homo sapiens chromosome 5 clone CTD-2312G21, comp... 44 5.9 1
(AC010105) Homo sapiens BAC clone RP11-563E24 from 2, comple... 44 5.9 1
(AC008169) Homo sapiens BAC clone RP11-252D22 from 2, comple... 44 5.9 1
(AC007600) Homo sapiens chromosome 16 clone RP11-264A16, com... 44 5.9 1
(AC159962) Medicago truncatula chromosome 6 clone mth2-180f1... 44 5.9 1
(AC146773) Didelphis virginiana clone LB3-175O22, WORKING DR... 44 5.9 1
(AC138514) Homo sapiens chromosome 5 clone XXfos-351A6, WORK... 44 5.9 1
(AC137815) Homo sapiens chromosome 5 clone XXfos-X186A1, WOR... 44 5.9 1
(CU914399) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1
(CU655921) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1
(CU606863) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1
(CU570995) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1
(CU466333) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1
(CU137690) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1
(CR759862) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 5.9 1
(AC224012) Bos taurus clone CH240-452G7, WORKING DRAFT SEQUE... 44 5.9 1
(AC213477) Pan troglodytes chromosome X clone CH251-670O24, ... 44 5.9 1
(AC179900) Strongylocentrotus purpuratus clone R3-1003N13, W... 44 5.9 1
(AC173373) Strongylocentrotus purpuratus clone R3-1004P12, W... 44 5.9 1
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72... 44 5.9 1
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 44 5.9 1
(AQ901452) HS_3203_B2_D11_T7C CIT Approved Human Genomic Spe... 44 5.9 1
(AQ450098) 500007H11.x1 CpIOWAM13mp18gDNA1 Cryptosporidium p... 44 5.9 1
(FH519239) CHO_OF4716xg21f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 5.9 1
(EK047486) 1092959645904 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.9 1
(EK043724) 1092959537194 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.9 1
(AQ189539) HS_3203_B2_D11_T7 CIT Approved Human Genomic Sper... 44 5.9 1
(EI084113) hgw0001ba04.g1 hgw Oryza punctata genomic clone h... 44 5.9 1
(ED613371) GM_WBa0004M02.f GM_WBa Glycine max genomic clone ... 44 5.9 1
(ED316290) AUAC-aab62h11.b1 Ascaris suum whole genome shotgu... 44 5.9 1
(ED202958) AUAC-aay66d07.b1 Ascaris suum whole genome shotgu... 44 5.9 1
(DX105594) MUGQ_CH252P020D02Sp6_GL339_013 CHORI-252 Vervet M... 44 5.9 1
(DH485494) Monosiga ovata DNA, fosmid clone: MOF-042A01, gen... 44 5.9 1
(DH456574) Macropus eugenii DNA with T7 primer, fosmid clone... 44 5.9 1
(DH437043) Macropus eugenii DNA with T7 primer, fosmid clone... 44 5.9 1
(CZ526004) GMW2-69A16a.g1 GMW2 Glycine max genomic, genomic ... 44 5.9 1
(CU103447) Equus caballus GSS, BAC clone CH241-209C12, SP6 e... 44 5.9 1
(CT133172) Sus scrofa genomic clone CH242-274G3, genomic sur... 44 5.9 1
(AG934215) Drosophila melanogaster DNA, clone: DME1-021O02.F... 44 5.9 1
(EH295710) UAHYP_02A_R_G11 UaHyphae_ARS Uromyces appendicula... 44 5.9 1
(EH253865) JGI_ACAC17775.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1
(EH246937) JGI_ACAC13502.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1
(EH246523) JGI_ACAC11763.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1
(EH244178) JGI_ACAC11810.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1
(EH237005) JGI_ACAC9977.rev ACAC Phakopsora pachyrhizi TW72-... 44 5.9 1
(EH236768) JGI_ACAC9836.rev ACAC Phakopsora pachyrhizi TW72-... 44 5.9 1
(EH236703) JGI_ACAC18518.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1
(EH236101) JGI_ACAC9823.rev ACAC Phakopsora pachyrhizi TW72-... 44 5.9 1
(DV132355) CV03062B2C04.f1 CV03-normalized library Euphorbia... 44 5.9 1
(DN739977) Pp1302 Phakopsora pachyrhizi germinating uredinio... 44 5.9 1
(CN577241) rf59f02.x1 Meloidogyne hapla J2 pAMP1 v1 Meloidog... 44 5.9 1
(CD819812) BN20.050D07F011221 BN20 Brassica napus cDNA clone... 44 5.9 1
(BJ338532) Dictyostelium discoideum cDNA clone:dda61l22, 5' ... 44 5.9 1
(BJ336534) Dictyostelium discoideum cDNA clone:dda54c09, 5' ... 44 5.9 1
(BJ334202) Dictyostelium discoideum cDNA clone:dda45b14, 5' ... 44 5.9 1
(BJ330385) Dictyostelium discoideum cDNA clone:dda31j09, 5' ... 44 5.9 1
(FL757227) CCGC7597.g1 CCGC Panicum virgatum early floral bu... 44 5.9 1
(FE663219) UAHYP_19C_R_F04 UaHyphae_ARS Uromyces appendicula... 44 5.9 1
(FE663138) UAHYP_19C_F_F04 UaHyphae_ARS Uromyces appendicula... 44 5.9 1
(CP000524) Bartonella bacilliformis KC583, complete genome. 44 5.9 1
(AL161511) Arabidopsis thaliana DNA chromosome 4, contig fra... 42 7.3 4
(ER546053) 1093016175619 Global-Ocean-Sampling_GS-35-01-01-1... 40 9.0 2
(AL357121) Human DNA sequence from clone RP11-381J15 on chro... 42 9.2 2
(FC623566) CAXT3409.rev CAXT Lottia gigantea from mantle Lot... 38 9.6 2
(EY406503) pOP-EAP01580_EST_C_1_pBSK_SK EA (Oil Palm Embryoi... 34 9.6 2
(CR391961) Zebrafish DNA sequence from clone DKEY-44G17 in l... 36 10.0 5

>(BJ343095) Dictyostelium discoideum cDNA clone:dda22c06, 3' end,
single read.
Length = 586

Score = 307 bits (155), Expect(3) = e-173
Identities = 170/170 (100%)
Strand = Plus / Minus


Query: 1 agaaaaaagcatcttttggtaaagaatttcancaaaanncaataattcattgttgttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agaaaaaagcatcttttggtaaagaatttcancaaaanncaataattcattgttgttatg 527


Query: 61 tttattcttttganncaactttctttggaaccagtgatggtaatattttagtttttaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tttattcttttganncaactttctttggaaccagtgatggtaatattttagtttttaaag 467


Query: 121 caaataatttaattcaattaattaaattatcacccaataatcaaatacaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caaataatttaattcaattaattaaattatcacccaataatcaaatacaa 417

Score = 250 bits (126), Expect(3) = e-173
Identities = 126/126 (100%)
Strand = Plus / Minus


Query: 460 ttaaatggtaatattggaaattttaataatagtggtagtacaggtgctagtggtggtgct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ttaaatggtaatattggaaattttaataatagtggtagtacaggtgctagtggtggtgct 68


Query: 520 agtgcaagtgctagtgctagtaatatagtttccagttttagaaaaagtggattttttgtt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 agtgcaagtgctagtgctagtaatatagtttccagttttagaaaaagtggattttttgtt 8


Query: 580 gctttt 585
||||||
Sbjct: 7 gctttt 2

Score = 113 bits (57), Expect(3) = e-173
Identities = 57/57 (100%)
Strand = Plus / Minus


Query: 188 acaattctctccaatatttacaatttcaccctacaatagtaaagatgaaagaaaaat 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acaattctctccaatatttacaatttcaccctacaatagtaaagatgaaagaaaaat 343

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 522,625,670
Number of extensions: 35495904
Number of successful extensions: 2926625
Number of sequences better than 10.0: 205
Length of query: 585
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 562
Effective length of database: 99,442,330,388
Effective search space: 55886589678056
Effective search space used: 55886589678056
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.21
Homology vs Protein
Query= Contig-U02923-1 (Contig-U02923-1Q) /CSM_Contig/Contig-U02923-1Q.Seq.d
(585 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 413,692,339
Number of extensions: 4560826
Number of successful extensions: 4400
Number of sequences better than 10.0: 0
Number of HSP's gapped: 4400
Number of HSP's successfully gapped: 0
Length of query: 195
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 73
Effective length of database: 656,320,666
Effective search space: 47911408618
Effective search space used: 47911408618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.90 gvh: 0.47 alm: 0.44 top: 0.30 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: extracellular, including cell wall
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U02923-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0