Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U02923-1 (Contig-U02923-1Q) /CSM_Contig/Contig-U02923-1Q.Seq.d (585 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ343095) Dictyostelium discoideum cDNA clone:dda22c06, 3' ... 307 e-173 3 (M73809) Plasmodium falciparum strain 311 merozoite surface ... 56 0.002 1 (EU810494) Plasmodium falciparum isolate 085_N15 merozoite s... 56 0.002 1 (EU810462) Plasmodium falciparum isolate 053_F55 merozoite s... 56 0.002 1 (EU647468) Plasmodium falciparum isolate 19 merozoite surfac... 56 0.002 1 (EU647460) Plasmodium falciparum isolate 22 merozoite surfac... 56 0.002 1 (DQ168571) Plasmodium falciparum isolate wos50 merozoite sur... 56 0.002 1 (DQ153256) Plasmodium falciparum isolate AR2 merozoite surfa... 56 0.002 1 (DQ115967) Plasmodium falciparum isolate AR1 merozoite surfa... 56 0.002 1 (AY375168) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1 (AY331640) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1 (AY331637) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1 (AY331635) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1 (AY331623) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1 (AY331619) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1 (AY331614) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1 (AY331601) Plasmodium falciparum merozoite surface protein 2... 56 0.002 1 (AY137763) Plasmodium falciparum isolate IVc merozoite surfa... 56 0.002 1 (AF329581) Plasmodium falciparum genotype 3 from Solomon Isl... 56 0.002 1 (AF329578) Plasmodium falciparum genotype 1 from Malawi mero... 56 0.002 1 (AF329541) Plasmodium falciparum genotype 3 from Papua New G... 56 0.002 1 (DW201801) EST18071 Larval Stage 1 Aedes aegypti cDNA clone ... 40 0.006 2 (AF217015) Plasmodium falciparum isolate 65-58A merozoite su... 50 0.021 2 (FL606023) CAIG4094.fwd CAIG Postia placenta in rich medium ... 52 0.024 1 (FL606022) CAIG4094.rev CAIG Postia placenta in rich medium ... 52 0.024 1 (EU518806) Manihot violacea accD gene and accD-psaI intergen... 50 0.096 1 (EU518805) Manihot tristis accD gene and accD-psaI intergeni... 50 0.096 1 (EU518804) Manihot triphylla accD gene and accD-psaI interge... 50 0.096 1 (EU518803) Manihot sparsifolia accD gene and accD-psaI inter... 50 0.096 1 (EU518801) Manihot purpureocostata accD gene and accD-psaI i... 50 0.096 1 (EU518799) Manihot pilosa accD gene and accD-psaI intergenic... 50 0.096 1 (EU518798) Manihot pentaphylla accD gene and accD-psaI inter... 50 0.096 1 (EU518797) Manihot peltata accD gene and accD-psaI intergeni... 50 0.096 1 (EU518796) Manihot irwinii accD gene and accD-psaI intergeni... 50 0.096 1 (EU518792) Manihot esculenta subsp. peruviana accD gene and ... 50 0.096 1 (EU518791) Manihot esculenta subsp. esculenta accD gene and ... 50 0.096 1 (EU518789) Manihot chlorosticta accD gene and accD-psaI inte... 50 0.096 1 (EU518788) Manihot cecropiifolia accD gene and accD-psaI int... 50 0.096 1 (EU518784) Manihot anomala accD gene and accD-psaI intergeni... 50 0.096 1 (EU518783) Manihot alutacea accD gene and accD-psaI intergen... 50 0.096 1 (EU117376) Manihot esculenta cultivar TME3 chloroplast, comp... 50 0.096 1 (AP010521) Lotus japonicus genomic DNA, chromosome 6, clone:... 50 0.096 1 (U72957) Plasmodium falciparum merozoite surface protein 2 (... 50 0.096 1 (L22688) Plasmodium falciparum merozoite surface antigen 2 g... 50 0.096 1 (EU810598) Plasmodium falciparum isolate 189_TSY1690 merozoi... 50 0.096 1 (EU810597) Plasmodium falciparum isolate 188_TSY1285 merozoi... 50 0.096 1 (EU810596) Plasmodium falciparum isolate 187_TSY1280 merozoi... 50 0.096 1 (EU810588) Plasmodium falciparum isolate 179_TSY1092 merozoi... 50 0.096 1 (EU810533) Plasmodium falciparum isolate 124_TM154 merozoite... 50 0.096 1 (EU810521) Plasmodium falciparum isolate 112_TM109 merozoite... 50 0.096 1 (EU810461) Plasmodium falciparum isolate 052_F51 merozoite s... 50 0.096 1 (EU810457) Plasmodium falciparum isolate 048_F12 merozoite s... 50 0.096 1 (DQ166542) Plasmodium falciparum isolate wos58 merozoite sur... 50 0.096 1 (AJ318755) Plasmodium falciparum partial 3D7-wos41 gene for ... 50 0.096 1 (AJ318754) Plasmodium falciparum partial 3D7-wos44 gene for ... 50 0.096 1 (AJ318753) Plasmodium falciparum partial 3D7-wos42 gene for ... 50 0.096 1 (AJ318752) Plasmodium falciparum partial 3D7-wos43 gene for ... 50 0.096 1 (AF399999) Plasmodium falciparum isolate HN66 merozoite surf... 50 0.096 1 (AF329567) Plasmodium falciparum genotype 19 from Papua New ... 50 0.096 1 (AF329543) Plasmodium falciparum genotype 4/3D7 from Papua N... 50 0.096 1 (AF104717) Plasmodium falciparum isolate VN14 merozoite surf... 50 0.096 1 (AB116615) Plasmodium falciparum msp2 gene for merozoite sur... 50 0.096 1 (DX282338) OR_ABa0182J14.f OR_ABa Oryza ridleyi genomic clon... 50 0.096 1 (DB941719) Manihot esculenta mRNA, clone: CAS01_010_A18, 3'end. 50 0.096 1 (AC053484) Homo sapiens chromosome 12 clone RP11-20E24, WORK... 36 0.22 2 (AC107032) Homo sapiens 12 BAC RP11-613M5 (Roswell Park Canc... 36 0.22 2 (AC023961) Homo sapiens chromosome 12 clone RP11-613M5 map 1... 36 0.22 2 (AG727387) Macaca fuscata fuscata DNA, clone: MSB2-181H19_F,... 36 0.28 2 (CR382139) Debaryomyces hansenii strain CBS767 chromosome G ... 48 0.38 1 (EU810587) Plasmodium falciparum isolate 178_TSY682 merozoit... 48 0.38 1 (EU810510) Plasmodium falciparum isolate 101_TM54 merozoite ... 48 0.38 1 (DQ166541) Plasmodium falciparum isolate wos57 merozoite sur... 48 0.38 1 (DQ166538) Plasmodium falciparum isolate wos53 merozoite sur... 48 0.38 1 (AY534507) Plasmodium falciparum merozoite surface protein 2... 48 0.38 1 (AC168074) Bos taurus clone CH240-210K15, WORKING DRAFT SEQU... 48 0.38 1 (CZ532154) SRAA-aac77b06.b1 Strongyloides ratti whole genome... 48 0.38 1 (EH411819) RTHAIR1_73_A11.g1_A002 Sorghum bicolor BTx623 Roo... 48 0.38 1 (EG724765) GTE00007083 Guillardia theta non-normalised Guill... 48 0.38 1 (EG718241) GTE00003807 Guillardia theta non-normalised Guill... 48 0.38 1 (BG411756) OV2_37_F09.g1_A002 Ovary 2 (OV2) Sorghum bicolor ... 48 0.38 1 (AW745958) WS1_38_B04.g1_A002 Water-stressed 1 (WS1) Sorghum... 48 0.38 1 (EY809850) PT11-C1-900-001-A02-CT.F Poncirus trifoliata leaf... 48 0.38 1 (EX818211) CBNA5973.fwd CBNA Phycomyces blakesleeanus NRRL15... 48 0.38 1 (AM180088) Haloquadratum walsbyi DSM 16790 complete genome. 48 0.38 1 (AF329549) Plasmodium falciparum genotype 8 from Papua New G... 38 0.41 2 (EK427080) 1095516039253 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.85 2 (EJ145113) 1092343698669 Global-Ocean-Sampling_GS-27-01-01-1... 42 0.86 2 (FE878247) XYM17530.rev XYM Monosiga brevicollis rapidly gro... 34 1.1 2 (AX348509) Sequence 17 from Patent WO0202809. 42 1.3 2 (CR847881) Zebrafish DNA sequence from clone DKEY-277E10 in ... 46 1.5 1 (BV239176) S234P6243FB12.T0 EnglishShepherd Canis familiaris... 46 1.5 1 (AC146599) Mus musculus BAC clone RP24-128L9 from 6, complet... 46 1.5 1 (AC122240) Mus musculus BAC clone RP23-145L9 from 6, complet... 46 1.5 1 (U91674) Plasmodium falciparum isolate V375, merozoite surfa... 46 1.5 1 (CR940347) Theileria annulata genomic DNA chromosome 1 part 1. 46 1.5 1 (FH245957) CHO_OF3007xk04r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 1.5 1 (ET983630) CHO_OF699xl16r1.ab1 CHO_OF Nicotiana tabacum geno... 46 1.5 1 (EK175603) 1095458096165 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1 (DH441558) Macropus eugenii DNA with T7 primer, fosmid clone... 46 1.5 1 (DE829998) Monosiga ovata DNA, BAC clone: MOBS-004J10_R, 3'end. 46 1.5 1 (BX227917) Danio rerio genomic clone DKEY-244L7, genomic sur... 46 1.5 1 (BX124359) Danio rerio genomic clone DKEY-73E19, genomic sur... 46 1.5 1 (EH777378) CNSM9682.b1_C21.ab1 CNS(LMS) yellow starthistle C... 46 1.5 1 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 46 1.5 1 (CP000033) Lactobacillus acidophilus NCFM, complete genome. 46 1.5 1 (AC213151) Populus trichocarpa clone POP014-H20, complete se... 38 1.7 6 (AM488960) Vitis vinifera contig VV78X259221.3, whole genome... 38 2.7 2 (FC644411) CAXU7157.rev CAXU Lottia gigantea from female gon... 38 2.7 2 (AC160660) Bos taurus clone CH240-95L1, WORKING DRAFT SEQUEN... 32 2.9 2 (AC167985) Bos taurus clone CH240-215K19, WORKING DRAFT SEQU... 32 2.9 2 (AC163376) Bos taurus clone CH240-126B14, WORKING DRAFT SEQU... 32 2.9 2 (ED323811) AUAC-aaf06d04.b1 Ascaris suum whole genome shotgu... 34 4.0 2 (ED198863) AUAC-aao93e04.b1 Ascaris suum whole genome shotgu... 34 4.1 2 (AC114041) Rattus norvegicus clone CH230-187A1, WORKING DRAF... 38 5.7 5 (CU929038) Zebrafish DNA sequence from clone CH1073-184K22 i... 44 5.9 1 (BX539308) Zebrafish DNA sequence from clone DKEYP-84C8 in l... 44 5.9 1 (AC153945) Mus musculus 10 BAC RP24-501G17 (Roswell Park Can... 44 5.9 1 (AC153137) Mus musculus BAC clone RP23-471J16 from chromosom... 44 5.9 1 (AC122501) Mus musculus BAC clone RP24-410D23 from chromosom... 44 5.9 1 (AC121911) Mus musculus BAC clone RP24-181L3 from chromosome... 44 5.9 1 (FM992693) Candida dubliniensis CD36 chromosome 6, complete ... 44 5.9 1 (AM489336) Vitis vinifera contig VV78X236196.3, whole genome... 44 5.9 1 (AM439595) Vitis vinifera contig VV78X168610.8, whole genome... 44 5.9 1 (AJ003165) Populus trichocarpa cv. Trichobel ABI3 gene. 44 5.9 1 (AC124951) Medicago truncatula chromosome 6 clone mth2-7p23,... 44 5.9 1 (DJ386697) Diagnosis of Diseases Associated with Metastasis. 44 5.9 1 (AX348857) Sequence 315 from Patent WO0202807. 44 5.9 1 (AX281493) Sequence 157 from Patent WO0177376. 44 5.9 1 (Z98853) Caenorhabditis elegans Cosmid R08A2. 44 5.9 1 (U81000) Dictyostelium discoideum unknown protein mRNA, prom... 44 5.9 1 (EF710647) Glyptapanteles flavicoxis clone BAC 9N7, complete... 44 5.9 1 (DQ317108) Drosophila mojavensis Dscam gene, exons 3 through... 44 5.9 1 (DQ141107) Drosophila mojavensis Dscam gene, partial sequence. 44 5.9 1 (AY375169) Plasmodium falciparum merozoite surface protein 2... 44 5.9 1 (AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 44 5.9 1 (CR759834) Human DNA sequence from clone DAMC-220I8 on chrom... 44 5.9 1 (AL662852) Human DNA sequence from clone XXbac-228J24 on chr... 44 5.9 1 (AL645937) Human DNA sequence from clone XXbac-171B11 on chr... 44 5.9 1 (AC137551) Homo sapiens chromosome 5 clone RP11-867C24, comp... 44 5.9 1 (AC136590) Homo sapiens chromosome 5 clone CTD-2312G21, comp... 44 5.9 1 (AC010105) Homo sapiens BAC clone RP11-563E24 from 2, comple... 44 5.9 1 (AC008169) Homo sapiens BAC clone RP11-252D22 from 2, comple... 44 5.9 1 (AC007600) Homo sapiens chromosome 16 clone RP11-264A16, com... 44 5.9 1 (AC159962) Medicago truncatula chromosome 6 clone mth2-180f1... 44 5.9 1 (AC146773) Didelphis virginiana clone LB3-175O22, WORKING DR... 44 5.9 1 (AC138514) Homo sapiens chromosome 5 clone XXfos-351A6, WORK... 44 5.9 1 (AC137815) Homo sapiens chromosome 5 clone XXfos-X186A1, WOR... 44 5.9 1 (CU914399) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1 (CU655921) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1 (CU606863) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1 (CU570995) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1 (CU466333) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1 (CU137690) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1 (CR759862) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 5.9 1 (AC224012) Bos taurus clone CH240-452G7, WORKING DRAFT SEQUE... 44 5.9 1 (AC213477) Pan troglodytes chromosome X clone CH251-670O24, ... 44 5.9 1 (AC179900) Strongylocentrotus purpuratus clone R3-1003N13, W... 44 5.9 1 (AC173373) Strongylocentrotus purpuratus clone R3-1004P12, W... 44 5.9 1 (AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72... 44 5.9 1 (AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 44 5.9 1 (AQ901452) HS_3203_B2_D11_T7C CIT Approved Human Genomic Spe... 44 5.9 1 (AQ450098) 500007H11.x1 CpIOWAM13mp18gDNA1 Cryptosporidium p... 44 5.9 1 (FH519239) CHO_OF4716xg21f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 5.9 1 (EK047486) 1092959645904 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.9 1 (EK043724) 1092959537194 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.9 1 (AQ189539) HS_3203_B2_D11_T7 CIT Approved Human Genomic Sper... 44 5.9 1 (EI084113) hgw0001ba04.g1 hgw Oryza punctata genomic clone h... 44 5.9 1 (ED613371) GM_WBa0004M02.f GM_WBa Glycine max genomic clone ... 44 5.9 1 (ED316290) AUAC-aab62h11.b1 Ascaris suum whole genome shotgu... 44 5.9 1 (ED202958) AUAC-aay66d07.b1 Ascaris suum whole genome shotgu... 44 5.9 1 (DX105594) MUGQ_CH252P020D02Sp6_GL339_013 CHORI-252 Vervet M... 44 5.9 1 (DH485494) Monosiga ovata DNA, fosmid clone: MOF-042A01, gen... 44 5.9 1 (DH456574) Macropus eugenii DNA with T7 primer, fosmid clone... 44 5.9 1 (DH437043) Macropus eugenii DNA with T7 primer, fosmid clone... 44 5.9 1 (CZ526004) GMW2-69A16a.g1 GMW2 Glycine max genomic, genomic ... 44 5.9 1 (CU103447) Equus caballus GSS, BAC clone CH241-209C12, SP6 e... 44 5.9 1 (CT133172) Sus scrofa genomic clone CH242-274G3, genomic sur... 44 5.9 1 (AG934215) Drosophila melanogaster DNA, clone: DME1-021O02.F... 44 5.9 1 (EH295710) UAHYP_02A_R_G11 UaHyphae_ARS Uromyces appendicula... 44 5.9 1 (EH253865) JGI_ACAC17775.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1 (EH246937) JGI_ACAC13502.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1 (EH246523) JGI_ACAC11763.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1 (EH244178) JGI_ACAC11810.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1 (EH237005) JGI_ACAC9977.rev ACAC Phakopsora pachyrhizi TW72-... 44 5.9 1 (EH236768) JGI_ACAC9836.rev ACAC Phakopsora pachyrhizi TW72-... 44 5.9 1 (EH236703) JGI_ACAC18518.rev ACAC Phakopsora pachyrhizi TW72... 44 5.9 1 (EH236101) JGI_ACAC9823.rev ACAC Phakopsora pachyrhizi TW72-... 44 5.9 1 (DV132355) CV03062B2C04.f1 CV03-normalized library Euphorbia... 44 5.9 1 (DN739977) Pp1302 Phakopsora pachyrhizi germinating uredinio... 44 5.9 1 (CN577241) rf59f02.x1 Meloidogyne hapla J2 pAMP1 v1 Meloidog... 44 5.9 1 (CD819812) BN20.050D07F011221 BN20 Brassica napus cDNA clone... 44 5.9 1 (BJ338532) Dictyostelium discoideum cDNA clone:dda61l22, 5' ... 44 5.9 1 (BJ336534) Dictyostelium discoideum cDNA clone:dda54c09, 5' ... 44 5.9 1 (BJ334202) Dictyostelium discoideum cDNA clone:dda45b14, 5' ... 44 5.9 1 (BJ330385) Dictyostelium discoideum cDNA clone:dda31j09, 5' ... 44 5.9 1 (FL757227) CCGC7597.g1 CCGC Panicum virgatum early floral bu... 44 5.9 1 (FE663219) UAHYP_19C_R_F04 UaHyphae_ARS Uromyces appendicula... 44 5.9 1 (FE663138) UAHYP_19C_F_F04 UaHyphae_ARS Uromyces appendicula... 44 5.9 1 (CP000524) Bartonella bacilliformis KC583, complete genome. 44 5.9 1 (AL161511) Arabidopsis thaliana DNA chromosome 4, contig fra... 42 7.3 4 (ER546053) 1093016175619 Global-Ocean-Sampling_GS-35-01-01-1... 40 9.0 2 (AL357121) Human DNA sequence from clone RP11-381J15 on chro... 42 9.2 2 (FC623566) CAXT3409.rev CAXT Lottia gigantea from mantle Lot... 38 9.6 2 (EY406503) pOP-EAP01580_EST_C_1_pBSK_SK EA (Oil Palm Embryoi... 34 9.6 2 (CR391961) Zebrafish DNA sequence from clone DKEY-44G17 in l... 36 10.0 5
>(BJ343095) Dictyostelium discoideum cDNA clone:dda22c06, 3' end, single read. Length = 586
Score = 307 bits (155), Expect(3) = e-173 Identities = 170/170 (100%) Strand = Plus / Minus
Query: 1 agaaaaaagcatcttttggtaaagaatttcancaaaanncaataattcattgttgttatg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 agaaaaaagcatcttttggtaaagaatttcancaaaanncaataattcattgttgttatg 527
Query: 61 tttattcttttganncaactttctttggaaccagtgatggtaatattttagtttttaaag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 tttattcttttganncaactttctttggaaccagtgatggtaatattttagtttttaaag 467
Query: 121 caaataatttaattcaattaattaaattatcacccaataatcaaatacaa 170 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 caaataatttaattcaattaattaaattatcacccaataatcaaatacaa 417
Score = 250 bits (126), Expect(3) = e-173 Identities = 126/126 (100%) Strand = Plus / Minus
Query: 460 ttaaatggtaatattggaaattttaataatagtggtagtacaggtgctagtggtggtgct 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 ttaaatggtaatattggaaattttaataatagtggtagtacaggtgctagtggtggtgct 68
Query: 520 agtgcaagtgctagtgctagtaatatagtttccagttttagaaaaagtggattttttgtt 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 agtgcaagtgctagtgctagtaatatagtttccagttttagaaaaagtggattttttgtt 8
Query: 580 gctttt 585 |||||| Sbjct: 7 gctttt 2
Score = 113 bits (57), Expect(3) = e-173 Identities = 57/57 (100%) Strand = Plus / Minus
Query: 188 acaattctctccaatatttacaatttcaccctacaatagtaaagatgaaagaaaaat 244 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 acaattctctccaatatttacaatttcaccctacaatagtaaagatgaaagaaaaat 343
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 522,625,670 Number of extensions: 35495904 Number of successful extensions: 2926625 Number of sequences better than 10.0: 205 Length of query: 585 Length of database: 101,790,757,118 Length adjustment: 23 Effective length of query: 562 Effective length of database: 99,442,330,388 Effective search space: 55886589678056 Effective search space used: 55886589678056 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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Homology vs Protein |
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