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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15132-1
Contig ID Contig-U15132-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15132-1 (Contig-U15132-1Q) /CSM_Contig/Contig-U15132-1Q.Seq.d
AAATAACAAAAAATAAATAAATAAACAATAAATAAATAAATAAATAAAAA
AATCATATATAAATTTGTCAAAAAATGCAATCAGATGATATTATTTGGGA
TGTTATAAATAAGAATTTCTGTTCTTTTAAAACAACATTTAATAAAACTA
AATTTTGTAGAAATGAATATAATGTAACTGGTGTTTGTAATAAAGTATCA
TGTCCATTAGCAAATAGTAGATATGCAACAGTACGTGAAGAAGAAGGTGT
ATGTTATTTATATATGAAAACAGTTGAAAGAGCTCATACTCCAAATAGAC
TTTGGGAAAAGATTAAATTGGATCCAAATTTCATGAAAGCAATAGAACAA
ATCGATAGTCATTTAGAATTTTGGCCAGGTCATATGAGTCATAGAGTTAA
ACAAAGATATATTAGAATTACACAATATTTAATTAGAATGAGAAAAATGA
GAAAACAAATCAAACGTGAATTAGTACCAATTAAAAAGAAAGCAGAAAGA
AGAGATGCAACTCGTGAGAATAAAGCATTGATTGCAGCTCATTTAACTAC
AAATATTAAGAAAGAATTATTAGAGAGATTGAATAAGGGTACTTATGCTG
ATATGCATTATTTCCCAGAAGATATTATTAATAATGTTTTGGAGAAAGAA
GGTGAAGCCGATCAATTCAGTGAAGAAGAAGCTGATGAAAATGAAGAAGA
AGGTGAAGAAGAAATGGAAGAAGAATTTGAAGATGATATCGATGATATTG
AAGATGCTGGTGGTGCTTTCGAATATGTCGAGGGTGATGATGATGAAGAT
GATATTGATGATGAATACGAAAATGAACCATACCAAGATGATGATGAAGA
AGATGATGATGATGATGATGATGATGACGAAGAAGTTAAACCACAAATTA
CAAAGAAGAGAGGTCCAACCTTCAAACCAACCAAAAAAACACCACAAAAA
CGTGTACATATGGAAGTCGAAATCGAAGAAGAAACCGAAAACCAAGCAAA
TTAAAGAAATTCTTAATTCTGGCAAAGATAATAATAAAAATCCAAATAAT
GTTAAAAATAACAATTTCAACTCCAAAAATAATCTCAATATTCAACACCC
CAATAAA
Gap no gap
Contig length 1107
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3202229
End point 3203335
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U15132
List of clone(s) 

est1=FC-AM03E,1,1107
Translated Amino Acid sequence 
itknk*innk*ink*knhi*ICQKMQSDDIIWDVINKNFCSFKTTFNKTKFCRNEYNVTG
VCNKVSCPLANSRYATVREEEGVCYLYMKTVERAHTPNRLWEKIKLDPNFMKAIEQIDSH
LEFWPGHMSHRVKQRYIRITQYLIRMRKMRKQIKRELVPIKKKAERRDATRENKALIAAH
LTTNIKKELLERLNKGTYADMHYFPEDIINNVLEKEGEADQFSEEEADENEEEGEEEMEE
EFEDDIDDIEDAGGAFEYVEGDDDEDDIDDEYENEPYQDDDEEDDDDDDDDDEEVKPQIT
KKRGPTFKPTKKTPQKRVHMEVEIEEETENQAN*rns*fwqr***ksk*c*k*qfqlqk*
sqystpq*
Translated Amino Acid sequence (All Frames) 
Frame A:
k*qkink*tink*inkkiiykfvkkcnqmilfgml*irisvllkqhliklnfvemnim*l
vfvikyhvh*qivdmqqyvkkkvyviyi*kqlkelilqidfgkrlnwiqis*kq*nksiv
i*nfgqvi*vielnkdilelhni*le*ek*enksnvn*yqlkrkqkeemqlvrikh*lql
i*lqilrkny*rd*irvlmliciisqkillimfwrkkvkpinsvkkklmkmkkkvkkkwk
knlkmismilkmlvvlsnmsrvmmmkmilmmntkmnhtkmmmkkmmmmmmmmtkklnhkl
qrrevqpsnqpkkhhknvyiwkskskkkpktkqikeilnsgkdnnknpnnvknnnfnskn
nlniqhpnk


Frame B:
nnkk*inkq*ink*ikksyinlsknair*yylgcyk*eflff*nni**n*il*k*i*cnw
cl**simsisk**icnst*rrrcmlfiyens*kssysk*tlgkd*igskfhesnrtnr*s
frilarsyes*s*tkiy*nytifn*neknektnqt*istn*kesrkkrcns*e*sidcss
fnyky*eriireie*gylc*yalfprryy**cfgerr*srsiq*rrs**k*rrr*rrngr
ri*r*yr*y*rcwwcfricrg****r*y***irk*tipr***rr********rrs*ttny
keersnlqtnqknttktctygsrnrrrnrkpsklkkflilakiiikiqimlkitistpki
isifntpi


Frame C:
itknk*innk*ink*knhi*ICQKMQSDDIIWDVINKNFCSFKTTFNKTKFCRNEYNVTG
VCNKVSCPLANSRYATVREEEGVCYLYMKTVERAHTPNRLWEKIKLDPNFMKAIEQIDSH
LEFWPGHMSHRVKQRYIRITQYLIRMRKMRKQIKRELVPIKKKAERRDATRENKALIAAH
LTTNIKKELLERLNKGTYADMHYFPEDIINNVLEKEGEADQFSEEEADENEEEGEEEMEE
EFEDDIDDIEDAGGAFEYVEGDDDEDDIDDEYENEPYQDDDEEDDDDDDDDDEEVKPQIT
KKRGPTFKPTKKTPQKRVHMEVEIEEETENQAN*rns*fwqr***ksk*c*k*qfqlqk*
sqystpq*
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15132-1 (Contig-U15132-1Q)
/CSM_Contig/Contig-U15132-1Q.Seq.d
         (1107 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15132-1 (Contig-U15132-1Q) /CSM_Contig/Conti...  1181  0.0
Contig-U05839-1 (Contig-U05839-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11914-1 (Contig-U11914-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U09443-1 (Contig-U09443-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U09271-1 (Contig-U09271-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U15871-1 (Contig-U15871-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U15744-1 (Contig-U15744-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U12285-1 (Contig-U12285-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Conti...    38  0.028

>Contig-U15132-1 (Contig-U15132-1Q) /CSM_Contig/Contig-U15132-1Q.Seq.d
          Length = 1107

 Score = 1181 bits (596), Expect = 0.0
 Identities = 596/596 (100%)
 Strand = Plus / Plus

                                                                       
Query: 77  gcaatcagatgatattatttgggatgttataaataagaatttctgttcttttaaaacaac 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  gcaatcagatgatattatttgggatgttataaataagaatttctgttcttttaaaacaac 136

                                                                       
Query: 137 atttaataaaactaaattttgtagaaatgaatataatgtaactggtgtttgtaataaagt 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atttaataaaactaaattttgtagaaatgaatataatgtaactggtgtttgtaataaagt 196

                                                                       
Query: 197 atcatgtccattagcaaatagtagatatgcaacagtacgtgaagaagaaggtgtatgtta 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atcatgtccattagcaaatagtagatatgcaacagtacgtgaagaagaaggtgtatgtta 256

                                                                       
Query: 257 tttatatatgaaaacagttgaaagagctcatactccaaatagactttgggaaaagattaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttatatatgaaaacagttgaaagagctcatactccaaatagactttgggaaaagattaa 316

                                                                       
Query: 317 attggatccaaatttcatgaaagcaatagaacaaatcgatagtcatttagaattttggcc 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attggatccaaatttcatgaaagcaatagaacaaatcgatagtcatttagaattttggcc 376

                                                                       
Query: 377 aggtcatatgagtcatagagttaaacaaagatatattagaattacacaatatttaattag 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggtcatatgagtcatagagttaaacaaagatatattagaattacacaatatttaattag 436

                                                                       
Query: 437 aatgagaaaaatgagaaaacaaatcaaacgtgaattagtaccaattaaaaagaaagcaga 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatgagaaaaatgagaaaacaaatcaaacgtgaattagtaccaattaaaaagaaagcaga 496

                                                                       
Query: 497 aagaagagatgcaactcgtgagaataaagcattgattgcagctcatttaactacaaatat 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aagaagagatgcaactcgtgagaataaagcattgattgcagctcatttaactacaaatat 556

                                                                       
Query: 557 taagaaagaattattagagagattgaataagggtacttatgctgatatgcattatttccc 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taagaaagaattattagagagattgaataagggtacttatgctgatatgcattatttccc 616

                                                                   
Query: 617 agaagatattattaataatgttttggagaaagaaggtgaagccgatcaattcagtg 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agaagatattattaataatgttttggagaaagaaggtgaagccgatcaattcagtg 672


 Score =  414 bits (209), Expect = e-115
 Identities = 223/230 (96%)
 Strand = Plus / Plus

                                                                        
Query: 878  cgaagaagttaaaccacaaattacaaagaagagaggtccaaccttcaaaccaaccnnnnn 937
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 878  cgaagaagttaaaccacaaattacaaagaagagaggtccaaccttcaaaccaaccaaaaa 937

                                                                        
Query: 938  nncaccacaaaaacgtgtacatatggaagtcgaaatcgaagaagaaaccgaaaaccaagc 997
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938  aacaccacaaaaacgtgtacatatggaagtcgaaatcgaagaagaaaccgaaaaccaagc 997

                                                                        
Query: 998  aaattaaagaaattcttaattctggcaaagataataataaaaatccaaataatgttaaaa 1057
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998  aaattaaagaaattcttaattctggcaaagataataataaaaatccaaataatgttaaaa 1057

                                                              
Query: 1058 ataacaatttcaactccaaaaataatctcaatattcaacaccccaataaa 1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 ataacaatttcaactccaaaaataatctcaatattcaacaccccaataaa 1107


 Score =  101 bits (51), Expect = 2e-21
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                              
Query: 734 tgatatcgatgatattgaagatgctggtggtgctttcgaatatgtcgaggg 784
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgatatcgatgatattgaagatgctggtggtgctttcgaatatgtcgaggg 784


>Contig-U05839-1 (Contig-U05839-1Q) /CSM_Contig/Contig-U05839-1Q.Seq.d
          Length = 814

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 880 aagaagttaaaccacaaatta 900
           |||||||||||||||||||||
Sbjct: 448 aagaagttaaaccacaaatta 468


>Contig-U11914-1 (Contig-U11914-1Q) /CSM_Contig/Contig-U11914-1Q.Seq.d
          Length = 1451

 Score = 40.1 bits (20), Expect = 0.007
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 tttaataaaactaaattttg 157
           ||||||||||||||||||||
Sbjct: 980 tttaataaaactaaattttg 961


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,421
Number of Sequences: 8402
Number of extensions: 21421
Number of successful extensions: 3016
Number of sequences better than 10.0: 293
length of query: 1107
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1091
effective length of database: 7,941,110
effective search space: 8663751010
effective search space used: 8663751010
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.12
Homology vs DNA 
Query= Contig-U15132-1 (Contig-U15132-1Q) /CSM_Contig/Contig-U15132-1Q.Seq.d
         (1107 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C22922) Dictyostelium discoideum gamete cDNA, clone FC-AM03.    1122   0.0    1
(EY489954) CBBP17356.rev CBBP Hirudo medicinalis hermaphrodi...    56   9e-12  4
(EY481037) CBBP11163.rev CBBP Hirudo medicinalis hermaphrodi...    56   1e-11  4
(FC731328) CBBG6567.fwd CBBG Lottia gigantea 12,15,18h embry...    68   2e-11  3
(FC788212) CBGC18596.fwd CBGC Lottia gigantea 15h 18h embryo...    68   2e-11  3
(FC785557) CBGC15857.fwd CBGC Lottia gigantea 15h 18h embryo...    68   2e-11  3
(FC803203) CBGC5627.fwd CBGC Lottia gigantea 15h 18h embryos...    68   2e-11  3
(FC789589) CBGC19803.fwd CBGC Lottia gigantea 15h 18h embryo...    68   2e-11  3
(FC757013) CBBI9771.fwd CBBI Lottia gigantea 26h,37h,61h Lar...    68   6e-11  3
(CZ542454) SRAA-aad44c05.g1 Strongyloides ratti whole genome...    66   1e-10  3
(EY491469) CBBP18281.fwd CBBP Hirudo medicinalis hermaphrodi...    56   3e-10  2
(EY481038) CBBP11163.fwd CBBP Hirudo medicinalis hermaphrodi...    56   3e-10  2
(EY489955) CBBP17356.fwd CBBP Hirudo medicinalis hermaphrodi...    56   3e-10  2
(EY499351) CBBP4633.fwd CBBP Hirudo medicinalis hermaphrodit...    56   3e-10  2
(BI743001) kx37f01.y1 Parastrongyloides trichosuri IL pAMP1 ...    64   4e-09  2
(CV659940) tak20e03.y1 Hydra EST UCI 6 Hydra magnipapillata ...    34   2e-08  4
(CV563757) taj77g08.y1 Hydra EST UCI 6 Hydra magnipapillata ...    34   2e-08  4
(EH009597) USDA-FP_182778 Lysiphlebus testaceipes adult whol...    60   2e-07  2
(FF606594) G825P5129RE3.T0 Acorn worm normalized gastrula pE...    52   3e-06  2
(FF468171) G613P6014RG8.T0 Acorn worm blastula/gastrula pCMV...    52   3e-06  2
(FF630422) G825P541RF5.T0 Acorn worm normalized gastrula pEx...    52   3e-06  2
(FF606593) G825P5129FE3.T0 Acorn worm normalized gastrula pE...    52   3e-06  2
(CT820488) Paramecium tetraurelia 5-PRIME EST from clone LK0...    46   4e-06  2
(AU283107) Molgula tectiformis mRNA, clone:MT02B1D08R, 5' end.     60   3e-05  2
(CT776317) Paramecium tetraurelia 5-PRIME EST from clone LK0...    46   7e-05  2
(ES517925) BIG_AF_28027 Brine Shrimp embryos, 15 hours after...    46   2e-04  2
(DN557308) Ls_af1_14e12_T7 Litomosoides sigmodontis adult fe...    58   7e-04  1
(BM517910) ki84c05.y1 Ascaris suum male head SL1 TOPO v1 Mur...    58   7e-04  1
(BM284587) ki60g08.y1 Ascaris suum male gut SL1 TOPO v1 Murp...    58   7e-04  1
(BM283504) ki55b05.y1 Ascaris suum male gut SL1 TOPO v1 Murp...    58   7e-04  1
(BM283172) ki46b09.y1 Ascaris suum male gut SL1 TOPO v1 Murp...    58   7e-04  1
(EV466702) MDEST614 Hessian fly salivary gland cDNA Library ...    50   0.001  2
(BX538350) Cryptosporidium parvum chromosome 6, complete seq...    46   0.002  2
(DY447535) HSAA-aaa16e06.g1 UCI-11 Hydra vulgaris cDNA 5' si...    32   0.005  4
(BU092031) Mg_AFB_08E05_M13F Mesobuthus gibbosus adult femal...    44   0.008  2
(AE001377) Plasmodium falciparum 3D7 chromosome 2 section 14...    42   0.025  3
(CN761259) ID0AAA2DD04RM1 ApMS Acyrthosiphon pisum cDNA clon...    48   0.029  2
(CN748976) ApAL3SD-I-F10 ApAL3SD Acyrthosiphon pisum cDNA cl...    48   0.039  2
(EX611147) 255374548 Pea aphid whole body normalized full le...    48   0.043  2
(FF300656) 279338603 Pea aphid whole body normalized full le...    48   0.044  2
(EX648585) 256725214 Pea aphid whole body normalized full le...    48   0.045  2
(EX638059) 256617484 Pea aphid whole body normalized full le...    48   0.045  2
(CZ287533) cp53b05.f Candida parapsilosis Random Genomic Lib...    52   0.046  1
(EX610280) 255372060 Pea aphid whole body normalized full le...    48   0.046  2
(EX632511) 256563403 Pea aphid whole body normalized full le...    48   0.047  2
(AC016830) Homo sapiens chromosome 22 clone b81b3 map 22q11,...    38   0.11   2
(AC016027) Homo sapiens chromosome 22 clone b476c20 map 22q1...    38   0.11   2
(EE571192) D11_D11fv2b22_pDNRf_530635 Myzus persicae, line F...    50   0.18   1
(EE570946) B12_B12fv3i24_pDNRf_531217 Myzus persicae, line F...    50   0.18   1
(EE570698) H12_H12fm4h24_pDNRf_533047 Myzus persicae, line F...    50   0.18   1
(DW014455) w8f24_M13F Myzus persicae, tobacco lineage, whole...    50   0.18   1
(AF083031) Guillardia theta nucleomorph chromosome 3, comple...    34   0.40   2
(EG726430) GTE00013967 Guillardia theta non-normalised Guill...    34   0.52   2
(CO720291) tai41h08.y1 HyEch JUMY T1 Hydractinia echinata cD...    38   0.53   2
(AM732230) Cucumis melo subsp. melo EST, clone CI_03-G10-M13R.     44   0.57   2
(ED462159) AUAC-aax34e01.b1 Ascaris suum whole genome shotgu...    36   0.64   2
(DT740296) EST1174145 Aquilegia cDNA library Aquilegia formo...    36   0.69   2
(AC110250) Mus musculus chromosome 1, clone RP23-260K6, comp...    48   0.71   1
(AC187130) Callithrix jacchus chromosome UNK clone CH259-73H...    48   0.71   1
(ER613467) 1093016327660 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.71   1
(FK393521) 454GmaGlobSeed128153 Soybean Seeds Containing Glo...    48   0.71   1
(EX638650) 256624588 Pea aphid whole body normalized full le...    48   0.71   1
(AC116002) Homo sapiens chromosome 18, clone RP11-182L8, com...    40   1.5    4
(CU914527) S.lycopersicum DNA sequence from clone LE_HBa-213...    38   1.9    4
(EB564300) AGENCOURT_51782363 D. virilis EST Drosophila viri...    44   2.3    2
(CU606856) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   2.3    6
(CN629895) taf40h10.y1 Hydra EST Darmstadt I Hydra magnipapi...    32   2.7    3
(CT573123) Zebrafish DNA sequence from clone CH211-39K3 in l...    46   2.8    1
(CR387933) Zebrafish DNA sequence from clone DKEY-81L17 in l...    46   2.8    1
(BX957252) Zebrafish DNA sequence from clone CH211-106J21.         46   2.8    1
(BX927135) Zebrafish DNA sequence from clone DKEY-16P6 in li...    46   2.8    1
(BX901958) Zebrafish DNA sequence from clone DKEY-3H2 in lin...    46   2.8    1
(BX890613) Zebrafish DNA sequence from clone DKEY-156K2 in l...    46   2.8    1
(BX649241) Zebrafish DNA sequence from clone CH211-154K18 in...    46   2.8    1
(BX548173) Zebrafish DNA sequence from clone DKEY-47K16 in l...    46   2.8    1
(BX539310) Zebrafish DNA sequence from clone DKEY-19C16 in l...    46   2.8    1
(BX324003) Zebrafish DNA sequence from clone DKEY-81I14 in l...    46   2.8    1
(BX323072) Zebrafish DNA sequence from clone CH211-271G18.         46   2.8    1
(AC110896) Mus musculus chromosome 3, clone RP24-127P11, com...    46   2.8    1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    46   2.8    1
(AP005172) Oryza sativa Japonica Group genomic DNA, chromoso...    46   2.8    1
(AM471984) Vitis vinifera contig VV78X165229.4, whole genome...    46   2.8    1
(AM470847) Vitis vinifera contig VV78X061867.16, whole genom...    46   2.8    1
(EA680431) Sequence 59310 from patent US 7365185.                  46   2.8    1
(EA641621) Sequence 20500 from patent US 7365185.                  46   2.8    1
(BT025418) Bos taurus acyl-Coenzyme A dehydrogenase family, ...    46   2.8    1
(BC120061) Bos taurus acyl-Coenzyme A dehydrogenase family, ...    46   2.8    1
(CT033384) Platynereis dumerilii EST IB0AAA21CA05EM1.              46   2.8    1
(AC120679) Rattus norvegicus clone CH230-37N18, *** SEQUENCI...    46   2.8    1
(AC102965) Rattus norvegicus clone CH230-163F8, *** SEQUENCI...    46   2.8    1
(CT954273) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.8    1
(CT737212) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.8    1
(CT737182) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.8    1
(CT573234) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.8    1
(CR936985) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.8    1
(CR931804) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.8    1
(CR385089) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.8    1
(AC189604) Brassica rapa subsp. pekinensis clone KBrH015E17,...    46   2.8    1
(AC181643) Strongylocentrotus purpuratus clone R3-1103B10, W...    46   2.8    1
(AC171718) Bos taurus clone CH240-219P5, WORKING DRAFT SEQUE...    46   2.8    1

>(C22922) Dictyostelium discoideum gamete cDNA, clone FC-AM03.
          Length = 1107

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus


Query: 77  gcaatcagatgatattatttgggatgttataaataagaatttctgttcttttaaaacaac 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  gcaatcagatgatattatttgggatgttataaataagaatttctgttcttttaaaacaac 136


Query: 137 atttaataaaactaaattttgtagaaatgaatataatgtaactggtgtttgtaataaagt 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atttaataaaactaaattttgtagaaatgaatataatgtaactggtgtttgtaataaagt 196


Query: 197 atcatgtccattagcaaatagtagatatgcaacagtacgtgaagaagaaggtgtatgtta 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atcatgtccattagcaaatagtagatatgcaacagtacgtgaagaagaaggtgtatgtta 256


Query: 257 tttatatatgaaaacagttgaaagagctcatactccaaatagactttgggaaaagattaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttatatatgaaaacagttgaaagagctcatactccaaatagactttgggaaaagattaa 316


Query: 317 attggatccaaatttcatgaaagcaatagaacaaatcgatagtcatttagaattttggcc 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attggatccaaatttcatgaaagcaatagaacaaatcgatagtcatttagaattttggcc 376


Query: 377 aggtcatatgagtcatagagttaaacaaagatatattagaattacacaatatttaattag 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggtcatatgagtcatagagttaaacaaagatatattagaattacacaatatttaattag 436


Query: 437 aatgagaaaaatgagaaaacaaatcaaacgtgaattagtaccaattaaaaagaaagcaga 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatgagaaaaatgagaaaacaaatcaaacgtgaattagtaccaattaaaaagaaagcaga 496


Query: 497 aagaagagatgcaactcgtgagaataaagcattgattgcagctcatttaactacaaatat 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aagaagagatgcaactcgtgagaataaagcattgattgcagctcatttaactacaaatat 556


Query: 557 taagaaagaattattagagagattgaataagggtacttatgctgatatgcattatttccc 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taagaaagaattattagagagattgaataagggtacttatgctgatatgcattatttccc 616


Query: 617 agaagatattattaataatgttttgg 642
           ||||||||||||||||||||||||||
Sbjct: 617 agaagatattattaataatgttttgg 642

 Score =  115 bits (58), Expect(5) = 1e-60
 Identities = 58/58 (100%)
 Strand = Plus / Plus


Query: 940 caccacaaaaacgtgtacatatggaagtcgaaatcgaagaagaaaccgaaaaccaagc 997
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 caccacaaaaacgtgtacatatggaagtcgaaatcgaagaagaaaccgaaaaccaagc 997

 Score =  109 bits (55), Expect(5) = 1e-60
 Identities = 55/55 (100%)
 Strand = Plus / Plus


Query: 878 cgaagaagttaaaccacaaattacaaagaagagaggtccaaccttcaaaccaacc 932
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 cgaagaagttaaaccacaaattacaaagaagagaggtccaaccttcaaaccaacc 932

 Score = 56.0 bits (28), Expect(5) = 1e-60
 Identities = 28/28 (100%)
 Strand = Plus / Plus


Query: 757 ctggtggtgctttcgaatatgtcgaggg 784
           ||||||||||||||||||||||||||||
Sbjct: 757 ctggtggtgctttcgaatatgtcgaggg 784

 Score = 34.2 bits (17), Expect(5) = 1e-60
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 1091 ttcaacaccccaataaa 1107
            |||||||||||||||||
Sbjct: 1091 ttcaacaccccaataaa 1107

 Score = 28.2 bits (14), Expect(5) = 1e-60
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 236 tgaagaagaaggtg 249
           ||||||||||||||
Sbjct: 692 tgaagaagaaggtg 705

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 963,835,254
Number of extensions: 60873356
Number of successful extensions: 5143507
Number of sequences better than 10.0: 147
Length of query: 1107
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1083
Effective length of database: 97,308,875,965
Effective search space: 105385512670095
Effective search space used: 105385512670095
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15132-1 (Contig-U15132-1Q) /CSM_Contig/Contig-U15132-1Q.Seq.d
         (1107 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DJ3) RecName: Full=Protein MAK16 homolog; AltName: Full=MAK1...   385   e-105
BT081500_1(BT081500|pid:none) Rana catesbeiana clone rcat-evr-52...   223   9e-57
BC039740_1(BC039740|pid:none) Homo sapiens MAK16 homolog (S. cer...   223   1e-56
(Q9BXY0) RecName: Full=Protein MAK16 homolog; AltName: Full=Prot...   223   1e-56
(Q1RML7) RecName: Full=Protein MAK16 homolog;  &BC114829_1(BC114...   222   2e-56
AE017346_231(AE017346|pid:none) Cryptococcus neoformans var. neo...   222   2e-56
BC090035_1(BC090035|pid:none) Rattus norvegicus MAK16 homolog (S...   221   5e-56
AK015369_1(AK015369|pid:none) Mus musculus adult male testis cDN...   219   1e-55
AK340431_1(AK340431|pid:none) Acyrthosiphon pisum ACYPI003160 mR...   219   1e-55
BT080831_1(BT080831|pid:none) Caligus clemensi clone ccle-evs-51...   217   7e-55
(Q9UTE6) RecName: Full=Protein mak16;  &AL132798_6(AL132798|pid:...   216   1e-54
BT071318_1(BT071318|pid:none) Picea sitchensis clone WS02824_L05...   205   2e-51
B88481(B88481) protein C16A3.5 [imported] - Caenorhabditis elega...   199   2e-49
AK068904_1(AK068904|pid:none) Oryza sativa Japonica Group cDNA c...   194   5e-48
BX538350_122(BX538350|pid:none) Cryptosporidium parvum chromosom...   194   5e-48
CP001574_347(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   192   1e-47
AC005292_12(AC005292|pid:none) Genomic sequence for Arabidopsis ...   192   2e-47
CP000499_462(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...   186   2e-45
FM992689_577(FM992689|pid:none) Candida dubliniensis CD36 chromo...   184   4e-45
FN392322_687(FN392322|pid:none) Pichia pastoris GS115 chromosome...   183   1e-44
CU928176_217(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   183   1e-44
CP000582_273(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...   182   2e-44
CR380953_262(CR380953|pid:none) Candida glabrata strain CBS138 c...   181   4e-44
AM920435_1300(AM920435|pid:none) Penicillium chrysogenum Wiscons...   180   7e-44
CR382129_305(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   180   9e-44
AP007164_129(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...   179   2e-43
(P10962) RecName: Full=Protein MAK16; AltName: Full=Maintenance ...   178   3e-43
AM494959_128(AM494959|pid:none) Leishmania braziliensis chromoso...   176   1e-42
AL513463_7(AL513463|pid:none) Neurospora crassa DNA linkage grou...   176   2e-42
CT005261_136(CT005261|pid:none) Leishmania major strain Friedlin...   175   3e-42
AC159429_41(AC159429|pid:none) Trypanosoma brucei chromosome 7 c...   174   7e-42
CR940352_682(CR940352|pid:none) Theileria annulata strain Ankara...   173   1e-41
CU640366_1114(CU640366|pid:none) Podospora anserina genomic DNA ...   170   7e-41
CR380952_24(CR380952|pid:none) Candida glabrata strain CBS138 ch...   166   2e-39
AY816157_1(AY816157|pid:none) Schistosoma japonicum SJCHGC04498 ...   165   3e-39
(P46435) RecName: Full=Protein MAK16 homolog; AltName: Full=SmMA...   163   1e-38
AE001362_34(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...   161   3e-38
G71621(G71621)MAK16 homolog PFB0175c - malaria parasite (Plasmod...   161   3e-38
AP005172_5(AP005172|pid:none) Oryza sativa Japonica Group genomi...   160   1e-37
L06180_1(L06180|pid:none) Schistosoma mansoni MAK16-like protein...   139   2e-31
CP000881_133(CP000881|pid:none) Hemiselmis andersenii chromosome...   117   6e-25

>(Q55DJ3) RecName: Full=Protein MAK16 homolog; AltName:
            Full=MAK16-like protein;
          Length = 309

 Score =  385 bits (988), Expect = e-105
 Identities = 204/309 (66%), Positives = 205/309 (66%)
 Frame = +3

Query: 75   MQSDDIIWDVINKNFCSFKTTFNKTKFCRNEYNVTGVCNKVSCPLANSRYATVREEEGVC 254
            MQSDDIIWDVINKNFCSFKTTFNKTKFC+NEYNVTGVCNKVSCPLANSRYATVREEEGVC
Sbjct: 1    MQSDDIIWDVINKNFCSFKTTFNKTKFCKNEYNVTGVCNKVSCPLANSRYATVREEEGVC 60

Query: 255  YLYMKTVERAHTPNRLWEKIKLDPNFMKAIEQIDSHLEFWPGHMSHRVKQRYIRITQYLX 434
            YLYMKTVERAHTPNRLWEKIKLDPNFMKAIEQIDSHLEFWPGHMSHRVKQRYIRITQYL
Sbjct: 61   YLYMKTVERAHTPNRLWEKIKLDPNFMKAIEQIDSHLEFWPGHMSHRVKQRYIRITQYLI 120

Query: 435  XXXXXXXXXXXELVPIKKKAERRDATRENKALIAAHLTTNIKKELLERLNKGTYADMHYF 614
                       ELVPIKKKAERRDATRENKALIAAHLTTNIKKELLERLNKGTYADMHYF
Sbjct: 121  RMRKMRKQIKRELVPIKKKAERRDATRENKALIAAHLTTNIKKELLERLNKGTYADMHYF 180

Query: 615  PEDIINNVLEKEGEADQFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAFXXXXXXXX 794
            PEDIINNVLEKEGEADQFS                            AGGAF
Sbjct: 181  PEDIINNVLEKEGEADQFSEEEADENEEEGEEEMEEEFEDDIDDIEDAGGAFEYVEGDDD 240

Query: 795  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKPQIXXXXXXXXXXXXXXXXXRVHMXXXX 974
                                          VKPQI                 RVHM
Sbjct: 241  EDDIDDEYENEPYQDDDEEDDDDDDDDDEEVKPQITKKRGPTFKPTKKTPQKRVHMEVEI 300

Query: 975  XXXXXNQAN 1001
                 NQAN
Sbjct: 301  EEETENQAN 309

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 961,427,423
Number of extensions: 13381309
Number of successful extensions: 34328
Number of sequences better than 10.0: 41
Number of HSP's gapped: 34274
Number of HSP's successfully gapped: 41
Length of query: 369
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 239
Effective length of database: 630,428,194
Effective search space: 150672338366
Effective search space used: 150672338366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.22  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U15132-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0