NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15128-1
Contig ID Contig-U15128-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15128-1 (Contig-U15128-1Q) /CSM_Contig/Contig-U15128-1Q.Seq.d
CTGTTGGCCTACTGGGATCATATCAATGCTAAAATGGGTCGTGTTAGAAC
AAAGACAATCAAAAGAGCTTCCAAACTCCTCATTGAGAAGCATTACCCAA
GACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCC
AAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCA
TTTAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAAT
TACAAGAAGAAGAAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCA
GCCATCAAAACCAACGAAGTTAAAATCGATCGTGATGTTGAAGAAATGCT
TAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTTGACC
AAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGAT
TGTTGATTATATAGAATTTTTTTTTATTTATTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 519
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3669512
End point 3669958
Strand (PLUS/MINUS) PLUS
Number of clones 33
Number of EST 48
Link to clone list U15128
List of clone(s) 

est1=VFM121F,1,479
est2=VFE119F,17,473
est3=VFE119Z,17,449
est4=VSI470Z,18,475
est5=VFG881F,20,458
est6=VFG881Z,20,438
est7=SSK109E,21,467
est8=VSB711E,22,504
est9=VSI470F,22,502
est10=VSJ410F,22,475
est11=VSJ410Z,22,449
est12=VSI191F,23,473
est13=VSE463Z,25,511
est14=SLE319E,26,518
est15=VSD873Z,27,449
est16=VSG216F,29,475
est17=VSG216Z,29,449
est18=VSC806E,31,465
est19=VSD836F,31,473
est20=VSD836Z,31,449
est21=VSF388F,31,475
est22=VSF388Z,31,443
est23=VSH591F,31,473
est24=VSH591Z,31,449
est25=VSH760F,31,490
est26=VSH760Z,31,424
est27=VSI191Z,31,439
est28=VSI273F,31,490
est29=VSI273Z,31,455
est30=FC-AQ04E,32,477
est31=FC-BA14E,32,477
est32=VSB780E,38,502
est33=VSG239E,38,519
est34=SSC462E,42,490
est35=VSE339E,43,510
est36=VSH427F,43,473
est37=VSH427Z,43,449
est38=FC-AL05Z,48,480
est39=VSG345F,56,490
est40=VSG546F,63,475
est41=VSI879F,80,473
est42=VSI879Z,80,449
est43=VSE245Z,91,514
est44=VSF193F,98,473
est45=VSF193Z,98,440
est46=VSI574F,104,259
est47=VSD835F,171,473
est48=VSG345Z,255,447
Translated Amino Acid sequence 
LLAYWDHINAKMGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNK
IAGFCTHLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKST
LEFPTIPQIHVVDQKRYNKNTKKSNK*tsdc*lyriffylfkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
LLAYWDHINAKMGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNK
IAGFCTHLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKST
LEFPTIPQIHVVDQKRYNKNTKKSNK*tsdc*lyriffylfkkkkkkkkkkkk


Frame B:
cwptgiismlkwvvleqrqskelpnsslrsitqdlpmtstltrelatnsprshqnv*etr
llvsvpi**dvllmvqsvvfltnykkkkekreittfhknqpskptklksivmlkkclnll
wnsqpshkstsltkrdttktpknqtnkrqivdyiefffiylkkkkkkkkkkk


Frame C:
vgllgsyqc*ngsc*nkdnqksfqtph*ealpktyq*lrh*qenlrqtrqdpiktfkkqd
cwflypfnetyc*wsspwyflqitrrrkrker*lrstrishqnqrs*nrs*c*rna*iyf
gipnhptnprr*pkeiqqkhqkikqinvrllii*nfflfi*kkkkkkkkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15128-1 (Contig-U15128-1Q)
/CSM_Contig/Contig-U15128-1Q.Seq.d
         (519 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15128-1 (Contig-U15128-1Q) /CSM_Contig/Conti...   502  e-142
Contig-U15708-1 (Contig-U15708-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U14454-1 (Contig-U14454-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U11477-1 (Contig-U11477-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U14539-1 (Contig-U14539-1Q) /CSM_Contig/Conti...    32  0.80
Contig-U16463-1 (Contig-U16463-1Q) /CSM_Contig/Conti...    30  3.2
Contig-U15795-1 (Contig-U15795-1Q) /CSM_Contig/Conti...    30  3.2
Contig-U15657-1 (Contig-U15657-1Q) /CSM_Contig/Conti...    30  3.2
Contig-U15519-1 (Contig-U15519-1Q) /CSM_Contig/Conti...    30  3.2

>Contig-U15128-1 (Contig-U15128-1Q) /CSM_Contig/Contig-U15128-1Q.Seq.d
          Length = 519

 Score =  502 bits (253), Expect = e-142
 Identities = 253/253 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttggcctactgggatcatatcaatgctaaaatgggtcgtgttagaacaaagacaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctgttggcctactgggatcatatcaatgctaaaatgggtcgtgttagaacaaagacaatc 60

                                                                       
Query: 61  aaaagagcttccaaactcctcattgagaagcattacccaagacttaccaatgacttcgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaagagcttccaaactcctcattgagaagcattacccaagacttaccaatgacttcgac 120

                                                                       
Query: 121 actaacaagagaacttgcgacaaactcgccaagatcccatcaaaacgtttaagaaacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actaacaagagaacttgcgacaaactcgccaagatcccatcaaaacgtttaagaaacaag 180

                                                                       
Query: 181 attgctggtttctgtacccatttaatgagacgtattgctaatggtccagtccgtggtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgctggtttctgtacccatttaatgagacgtattgctaatggtccagtccgtggtatt 240

                        
Query: 241 tcttacaaattac 253
           |||||||||||||
Sbjct: 241 tcttacaaattac 253


 Score =  238 bits (120), Expect = 7e-63
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                       
Query: 279 taactacgttccacaagaatcagccatcaaaaccaacgaagttaaaatcgatcgtgatgt 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taactacgttccacaagaatcagccatcaaaaccaacgaagttaaaatcgatcgtgatgt 338

                                                                       
Query: 339 tgaagaaatgcttaaatctactttggaattcccaaccatcccacaaatccacgtcgttga 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgaagaaatgcttaaatctactttggaattcccaaccatcccacaaatccacgtcgttga 398


 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 444 gtcagattgttgattatatagaa 466
           |||||||||||||||||||||||
Sbjct: 444 gtcagattgttgattatatagaa 466


>Contig-U15708-1 (Contig-U15708-1Q) /CSM_Contig/Contig-U15708-1Q.Seq.d
          Length = 2412

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  ctgttggcctactgggatc 19
          |||||||||||||||||||
Sbjct: 2  ctgttggcctactgggatc 20


>Contig-U14454-1 (Contig-U14454-1Q) /CSM_Contig/Contig-U14454-1Q.Seq.d
          Length = 151

 Score = 36.2 bits (18), Expect = 0.051
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                               
Query: 1  ctgttggcctactgggatcat 21
          ||||||||||||||| |||||
Sbjct: 1  ctgttggcctactggnatcat 21


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3490
Number of Sequences: 8402
Number of extensions: 3490
Number of successful extensions: 878
Number of sequences better than 10.0: 631
length of query: 519
length of database: 8,075,542
effective HSP length: 16
effective length of query: 503
effective length of database: 7,941,110
effective search space: 3994378330
effective search space used: 3994378330
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.12
Homology vs DNA 
Query= Contig-U15128-1 (Contig-U15128-1Q) /CSM_Contig/Contig-U15128-1Q.Seq.d
         (519 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ416146) Dictyostelium discoideum cDNA clone:ddv25i05, 5' ...   394   0.0    5
(AU268746) Dictyostelium discoideum vegetative cDNA clone:VS...   446   0.0    3
(AU034777) Dictyostelium discoideum slug cDNA, clone SLE319.      446   0.0    3
(AU268429) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    3
(AU267929) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    3
(AU268747) Dictyostelium discoideum vegetative cDNA clone:VS...   446   0.0    3
(AU051950) Dictyostelium discoideum slug cDNA, clone SSC462.      418   0.0    3
(AU266142) Dictyostelium discoideum vegetative cDNA clone:VS...   446   0.0    3
(C91349) Dictyostelium discoideum slug cDNA, clone SSK109.        446   0.0    3
(AU262192) Dictyostelium discoideum vegetative cDNA clone:VS...   446   0.0    3
(AU284509) Dictyostelium discoideum gamete cDNA clone:FC-BA1...   440   0.0    3
(AU269870) Dictyostelium discoideum vegetative cDNA clone:VS...   446   0.0    3
(BJ412565) Dictyostelium discoideum cDNA clone:ddv9e05, 5' e...   446   0.0    3
(AU262802) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    3
(AU267681) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    3
(AU264629) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    3
(AU284373) Dictyostelium discoideum gamete cDNA clone:FC-AQ0...   432   0.0    3
(AU265157) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    3
(AU268297) Dictyostelium discoideum vegetative cDNA clone:VS...   436   0.0    3
(BJ413236) Dictyostelium discoideum cDNA clone:ddv14b22, 5' ...   446   0.0    3
(AU266177) Dictyostelium discoideum vegetative cDNA clone:VS...   428   0.0    3
(BJ430855) Dictyostelium discoideum cDNA clone:ddv9e05, 3' e...   446   0.0    2
(AU269871) Dictyostelium discoideum vegetative cDNA clone:VS...   446   0.0    2
(AU264691) Dictyostelium discoideum vegetative cDNA clone:VS...   446   0.0    2
(AU266143) Dictyostelium discoideum vegetative cDNA clone:VS...   446   0.0    2
(BJ431595) Dictyostelium discoideum cDNA clone:ddv14b22, 3' ...   446   0.0    2
(AU268430) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(AU264630) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(AU265158) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(AU268298) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(AU266342) Dictyostelium discoideum vegetative cDNA clone:VS...   394   0.0    3
(AU267682) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(AU263033) Dictyostelium discoideum vegetative cDNA clone:VS...   418   0.0    3
(L35173) Dictyostelium discoideum ribosomal protein (rps17) ...   432   0.0    4
(AU262244) Dictyostelium discoideum vegetative cDNA clone:VS...   420   e-180  3
(AU284320) Dictyostelium discoideum gamete cDNA clone:FC-AL0...   400   e-178  3
(AU267432) Dictyostelium discoideum vegetative cDNA clone:VS...   418   e-178  2
(AU267431) Dictyostelium discoideum vegetative cDNA clone:VS...   394   e-175  3
(AU267930) Dictyostelium discoideum vegetative cDNA clone:VS...   375   e-171  3
(AU266613) Dictyostelium discoideum vegetative cDNA clone:VS...   381   e-169  3
(AU266178) Dictyostelium discoideum vegetative cDNA clone:VS...   391   e-168  2
(AU269379) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-161  3
(AU269380) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-157  2
(AU264851) Dictyostelium discoideum vegetative cDNA clone:VS...   311   e-150  3
(AU263126) Dictyostelium discoideum vegetative cDNA clone:VS...   319   e-147  3
(AU264852) Dictyostelium discoideum vegetative cDNA clone:VS...   311   e-146  2
(AU262968) Dictyostelium discoideum vegetative cDNA clone:VS...   299   e-145  3
(AU264628) Dictyostelium discoideum vegetative cDNA clone:VS...   240   6e-99  3
(AU268914) Dictyostelium discoideum vegetative cDNA clone:VS...   299   5e-77  1
(AU266343) Dictyostelium discoideum vegetative cDNA clone:VS...   222   1e-53  1
(EC762614) PSE00005856 rw_mgpallid Polysphondylium pallidum ...    66   2e-14  3
(EC760830) PSE00006503 rw_mgpallid Polysphondylium pallidum ...    66   1e-11  3
(EC745634) PSE00007772 rw_mgpallid Polysphondylium pallidum ...    66   3e-10  2
(BQ434132) AGENCOURT_7808782 NIH_MGC_92 Homo sapiens cDNA cl...    50   1e-08  2
(CK755548) eca01-9cs1-f06 Eca01 Eschscholzia californica cDN...    62   4e-08  2
(BG259081) 602379133F1 NIH_MGC_92 Homo sapiens cDNA clone IM...    50   4e-08  2
(EC747136) OTE00002073 Oxytricha trifallax nondirectional cD...    48   1e-07  2
(EC747116) OTE00002096 Oxytricha trifallax nondirectional cD...    48   1e-07  2
(EC746726) OTE00002191 Oxytricha trifallax nondirectional cD...    48   1e-07  2
(EC761391) PSE00000079 rw_mgpallid Polysphondylium pallidum ...    56   6e-07  2
(DV737030) AL010001000F11 AL01-normalized and subtracted lib...    42   3e-06  3
(CV509674) kc85g11.y1 Xiphinema index CSEQDL01 Xiphinema ind...    52   1e-05  3
(CV568872) kd22e02.y3 Xiphinema index CSEQDL01 Xiphinema ind...    52   1e-05  3
(CV507288) kc13h07.y1 Xiphinema index Xiphinema index cDNA 5...    52   1e-05  3
(DR346972) 73155 CERES-148 Arabidopsis thaliana cDNA clone 3...    36   8e-05  3
(DR346971) 133832 CERES-148 Arabidopsis thaliana cDNA clone ...    36   1e-04  3
(EE004442) ROE00009181 Rhizopus oryzae Company Rhizopus oryz...    38   1e-04  3
(EE004164) ROE00009085 Rhizopus oryzae Company Rhizopus oryz...    38   1e-04  3
(EE002200) ROE00008989 Rhizopus oryzae Company Rhizopus oryz...    38   1e-04  3
(EE002065) ROE00008893 Rhizopus oryzae Company Rhizopus oryz...    38   1e-04  3
(EE007447) ROE00002233 Rhizopus oryzae Company Rhizopus oryz...    38   1e-04  3
(CD477300) eca01-12ms1-h08 Eca01 Eschscholzia californica cD...    42   1e-04  2
(CD476897) eca01-7ms1-c05 Eca01 Eschscholzia californica cDN...    42   1e-04  2
(DR346973) 153686 CERES-148 Arabidopsis thaliana cDNA clone ...    36   1e-04  3
(CD477145) eca01-14ms1-h01 Eca01 Eschscholzia californica cD...    42   1e-04  2
(DR376354) 108514 CERES-148 Arabidopsis thaliana cDNA clone ...    36   2e-04  3
(AY087862) Arabidopsis thaliana clone 39018 mRNA, complete s...    36   2e-04  3
(FC712805) CAXY7651.rev CAXY Lottia gigantea from male gonad...    58   3e-04  1
(DB996387) Quercus mongolica subsp. crispula mRNA, clone: Qm...    36   4e-04  3
(DR306407) 4526382 CERES-149 Arabidopsis thaliana cDNA clone...    36   5e-04  3
(AM793722) Nicotiana tabacum EST, clone nt005147020.               40   5e-04  2
(DB998751) Quercus mongolica subsp. crispula mRNA, clone: Qm...    36   6e-04  3
(DB997114) Quercus mongolica subsp. crispula mRNA, clone: Qm...    36   6e-04  3
(AM686227) Entamoeba terrapinae GSS, clone terra148d06.q1k.        46   7e-04  3
(DN950767) Ost2T_420 Oak tissue culture growing 2 days in hy...    36   7e-04  3
(AM765040) Sycon raphanus EST, 5' end sequence, clone IL0ADA...    38   0.001  3
(FC807562) CBGC9073.fwd CBGC Lottia gigantea 15h 18h embryos...    56   0.001  1
(FC800522) CBGC3757.fwd CBGC Lottia gigantea 15h 18h embryos...    56   0.001  1
(FC798770) CBGC25625.fwd CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC797006) CBGC24534.fwd CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC797005) CBGC24534.rev CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC795897) CBGC2385.fwd CBGC Lottia gigantea 15h 18h embryos...    56   0.001  1
(FC791909) CBGC21280.fwd CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC791908) CBGC21280.rev CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC790325) CBGC20273.fwd CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC790324) CBGC20273.rev CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC790314) CBGC20266.fwd CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC790313) CBGC20266.rev CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC789910) CBGC20003.fwd CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1
(FC789909) CBGC20003.rev CBGC Lottia gigantea 15h 18h embryo...    56   0.001  1

>(BJ416146) Dictyostelium discoideum cDNA clone:ddv25i05, 5' end,
           single read.
          Length = 480

 Score =  394 bits (199), Expect(5) = 0.0
 Identities = 199/199 (100%)
 Strand = Plus / Plus


Query: 55  acaatcaaaagagcttccaaactcctcattgagaagcattacccaagacttaccaatgac 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  acaatcaaaagagcttccaaactcctcattgagaagcattacccaagacttaccaatgac 116


Query: 115 ttcgacactaacaagagaacttgcgacaaactcgccaagatcccatcaaaacgtttaaga 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ttcgacactaacaagagaacttgcgacaaactcgccaagatcccatcaaaacgtttaaga 176


Query: 175 aacaagattgctggtttctgtacccatttaatgagacgtattgctaatggtccagtccgt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aacaagattgctggtttctgtacccatttaatgagacgtattgctaatggtccagtccgt 236


Query: 235 ggtatttcttacaaattac 253
           |||||||||||||||||||
Sbjct: 237 ggtatttcttacaaattac 255

 Score =  240 bits (121), Expect(5) = 0.0
 Identities = 121/121 (100%)
 Strand = Plus / Plus


Query: 279 taactacgttccacaagaatcagccatcaaaaccaacgaagttaaaatcgatcgtgatgt 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taactacgttccacaagaatcagccatcaaaaccaacgaagttaaaatcgatcgtgatgt 340


Query: 339 tgaagaaatgcttaaatctactttggaattcccaaccatcccacaaatccacgtcgttga 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgaagaaatgcttaaatctactttggaattcccaaccatcccacaaatccacgtcgttga 400


Query: 399 c 399
           |
Sbjct: 401 c 401

 Score = 69.9 bits (35), Expect(5) = 0.0
 Identities = 35/35 (100%)
 Strand = Plus / Plus


Query: 444 gtcagattgttgattatatagaatttttttttatt 478
           |||||||||||||||||||||||||||||||||||
Sbjct: 446 gtcagattgttgattatatagaatttttttttatt 480

 Score = 61.9 bits (31), Expect(5) = 0.0
 Identities = 31/31 (100%)
 Strand = Plus / Plus


Query: 24 caatgctaaaatgggtcgtgttagaacaaag 54
          |||||||||||||||||||||||||||||||
Sbjct: 25 caatgctaaaatgggtcgtgttagaacaaag 55

 Score = 46.1 bits (23), Expect(5) = 0.0
 Identities = 23/23 (100%)
 Strand = Plus / Plus


Query: 1  ctgttggcctactgggatcatat 23
          |||||||||||||||||||||||
Sbjct: 1  ctgttggcctactgggatcatat 23

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 572,963,871
Number of extensions: 37017337
Number of successful extensions: 4137493
Number of sequences better than 10.0: 645
Length of query: 519
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 496
Effective length of database: 93,106,754,628
Effective search space: 46180950295488
Effective search space used: 46180950295488
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15128-1 (Contig-U15128-1Q) /CSM_Contig/Contig-U15128-1Q.Seq.d
         (519 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU124942_1(EU124942|pid:none) Arenicola marina ribosomal protein...   158   7e-38
EU247177_1(EU247177|pid:none) Lycosa singoriensis clone LSsin973...   158   9e-38
AY857475_1(AY857475|pid:none) Suberites domuncula S17 mRNA, comp...   157   1e-37
DQ066305_1(DQ066305|pid:none) Ixodes scapularis isolate IS-6-12L...   156   3e-37
AF548334_1(AF548334|pid:none) Branchiostoma belcheri ribosomal p...   156   3e-37
(A5PK63) RecName: Full=40S ribosomal protein S17;  &BC142374_1(B...   155   7e-37
BC091562_1(BC091562|pid:none) Danio rerio zgc:114188, mRNA (cDNA...   155   7e-37
AY892179_1(AY892179|pid:none) Synthetic construct Homo sapiens c...   154   1e-36
BT058153_1(BT058153|pid:none) Salmo salar clone Contig981 40S ri...   154   1e-36
(P08708) RecName: Full=40S ribosomal protein S17;  &AB174364_1(A...   154   1e-36
CR382132_602(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   154   1e-36
(P08636) RecName: Full=40S ribosomal protein S17;  &(Q7ZUB2) Rec...   154   1e-36
(P63273) RecName: Full=40S ribosomal protein S17;  &(P63274) Rec...   154   1e-36
EU551637_1(EU551637|pid:none) Dermacentor variabilis isolate DvM...   154   2e-36
(P04644) RecName: Full=40S ribosomal protein S17;  &BC058484_1(B...   154   2e-36
BC073558_1(BC073558|pid:none) Xenopus laevis MGC82841 protein, m...   153   2e-36
EU116928_1(EU116928|pid:none) Barentsia elongata putative riboso...   152   4e-36
(Q9P7J6) RecName: Full=40S ribosomal protein S17-B;  &AL157991_9...   152   5e-36
EU302578_1(EU302578|pid:none) Lineus viridis ribosomal protein r...   152   6e-36
(O42984) RecName: Full=40S ribosomal protein S17-A;  &AL096796_5...   152   6e-36
BT057407_1(BT057407|pid:none) Salmo salar clone ssal-evd-519-332...   152   6e-36
AY909424_1(AY909424|pid:none) Siniperca chuatsi clone C133 40S r...   151   8e-36
CP000584_487(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...   151   8e-36
AL935050_4(AL935050|pid:none) Zebrafish DNA sequence from clone ...   151   1e-35
AK167206_1(AK167206|pid:none) Mus musculus blastocyst blastocyst...   151   1e-35
CP001328_699(CP001328|pid:none) Micromonas sp. RCC299 chromosome...   151   1e-35
U22230_1(U22230|pid:none) Felis domesticus ribosomal protein S17...   150   2e-35
EF207952_1(EF207952|pid:none) Heliconius melpomene ribosomal pro...   150   2e-35
AB180423_1(AB180423|pid:none) Plutella xylostella mRNA for Ribos...   150   2e-35
(Q9LZ17) RecName: Full=40S ribosomal protein S17-4;  &AB008271_1...   150   2e-35
AB291571_1(AB291571|pid:none) Solea senegalensis rpS17 mRNA for ...   150   2e-35
EF070555_1(EF070555|pid:none) Maconellicoccus hirsutus clone WHM...   150   2e-35
(Q962R2) RecName: Full=40S ribosomal protein S17;  &AF400214_1(A...   150   2e-35
BT056862_1(BT056862|pid:none) Salmo salar clone ssal-rgb-518-182...   149   4e-35
AY087862_1(AY087862|pid:none) Arabidopsis thaliana clone 39018 m...   149   4e-35
(Q9SJ36) RecName: Full=40S ribosomal protein S17-2;  &AC007018_8...   149   4e-35
T28755(T28755)hypothetical protein T08B2.10 - Caenorhabditis ele...   148   9e-35
AM920437_2047(AM920437|pid:none) Penicillium chrysogenum Wiscons...   147   1e-34
AP007169_89(AP007169|pid:none) Aspergillus oryzae RIB40 genomic ...   147   1e-34
AJ783885_1(AJ783885|pid:none) Carabus granulatus mRNA for S17e r...   147   2e-34
CR380957_261(CR380957|pid:none) Candida glabrata strain CBS138 c...   146   3e-34
CR382122_57(CR382122|pid:none) Kluyveromyces lactis strain NRRL ...   146   3e-34
AM048971_1(AM048971|pid:none) Eucinetus sp. APV-2005 mRNA for ri...   146   3e-34
(Q9SQZ1) RecName: Full=40S ribosomal protein S17-3;  &AC011560_1...   146   3e-34
AM270369_14(AM270369|pid:none) Aspergillus niger contig An16c017...   145   4e-34
(P02407) RecName: Full=40S ribosomal protein S17-A; AltName: Ful...   145   6e-34
(P27770) RecName: Full=40S ribosomal protein S17; AltName: Full=...   145   6e-34
BT043963_1(BT043963|pid:none) Salmo salar clone HM5_0922 ribosom...   145   8e-34
CU928171_182(CU928171|pid:none) Kluyveromyces thermotolerans str...   145   8e-34
BT074356_1(BT074356|pid:none) Oncorhynchus mykiss clone omyk-evo...   144   1e-33
AJ783887_1(AJ783887|pid:none) Biphyllus lunatus mRNA for S17e ri...   144   1e-33
EF541358_1(EF541358|pid:none) Lygus lineolaris clone O47 ribosom...   144   1e-33
EF146750_1(EF146750|pid:none) Populus trichocarpa clone WS01213_...   144   1e-33
BT070777_1(BT070777|pid:none) Picea sitchensis clone WS0274_H02 ...   144   2e-33
EU934273_1(EU934273|pid:none) TSA: Anopheles darlingi AD-230 40S...   144   2e-33
BT051451_1(BT051451|pid:none) Medicago truncatula clone MTYF1_F2...   144   2e-33
AM460071_1(AM460071|pid:none) Vitis vinifera contig VV78X031109....   144   2e-33
AY231772_1(AY231772|pid:none) Drosophila yakuba clone yak-em_RpS...   143   3e-33
S00760(S00760) ribosomal protein S17, cytosolic - chicken (fragm...   143   3e-33
(P17704) RecName: Full=40S ribosomal protein S17;  &AE014296_175...   143   3e-33
CU928176_575(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   142   5e-33
EU032340_1(EU032340|pid:none) Phlebotomus papatasi 40S ribosomal...   142   6e-33
BT075902_1(BT075902|pid:none) Caligus rogercresseyi clone crog-e...   141   8e-33
BT036869_1(BT036869|pid:none) Zea mays full-length cDNA clone ZM...   140   1e-32
AY496126_1(AY496126|pid:none) Capsicum annuum 40S ribosomal prot...   140   1e-32
EU962934_1(EU962934|pid:none) Zea mays clone 246689 40S ribosoma...   140   1e-32
EF145090_1(EF145090|pid:none) Populus trichocarpa clone WS01120_...   140   1e-32
BT080183_1(BT080183|pid:none) Caligus clemensi clone ccle-evs-51...   139   3e-32
AM450949_2(AM450949|pid:none) Vitis vinifera contig VV78X115216....   139   4e-32
CP000496_938(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   139   4e-32
BT051179_1(BT051179|pid:none) Medicago truncatula clone MTYF1_F2...   139   5e-32
AC105733_11(AC105733|pid:none) Oryza sativa (japonica cultivar-g...   138   7e-32
CR382139_618(CR382139|pid:none) Debaryomyces hansenii strain CBS...   138   7e-32
AY850937_1(AY850937|pid:none) Pectinaria gouldii ribosomal prote...   136   3e-31
AY816063_1(AY816063|pid:none) Schistosoma japonicum clone SJCHGC...   136   4e-31
AY395570_1(AY395570|pid:none) Chlamys farreri ribosomal protein ...   135   5e-31
AY814268_1(AY814268|pid:none) Schistosoma japonicum SJCHGC00723 ...   135   6e-31
FN323033_1(FN323033|pid:none) Schistosoma japonicum isolate Anhu...   134   1e-30
(Q4MYY1) RecName: Full=40S ribosomal protein S17;                     134   1e-30
AM910996_592(AM910996|pid:none) Plasmodium knowlesi strain H chr...   132   4e-30
BT047781_1(BT047781|pid:none) Salmo salar clone ssal-evd-516-298...   132   4e-30
AM055943_45(AM055943|pid:none) Toxoplasma gondii RH, genomic DNA...   132   5e-30
AL049693_2(AL049693|pid:none) Human DNA sequence from clone RP4-...   131   9e-30
FN357437_3(FN357437|pid:none) Schistosoma mansoni genome sequenc...   130   1e-29
AJ563483_1(AJ563483|pid:none) Crassostrea gigas partial mRNA for...   125   5e-28
CP000883_72(CP000883|pid:none) Hemiselmis andersenii chromosome ...   114   1e-24
CT005266_265(CT005266|pid:none) Leishmania major strain Friedlin...   109   5e-23
AM494965_276(AM494965|pid:none) Leishmania braziliensis chromoso...   108   6e-23
AF539801_1(AF539801|pid:none) Plasmodiophora brassicae S17 ribos...   106   4e-22
AY826141_1(AY826141|pid:none) Aedes albopictus clone AL_160 ribo...   104   1e-21
AY881984_1(AY881984|pid:none) Verticillium dahliae ribosomal pro...   102   7e-21
AL590442_76(AL590442|pid:none) chromosome II of strain GB-M1 of ...    87   2e-16
AJ010592_89(AJ010592|pid:none) Guillardia theta DNA for complete...    79   5e-14
FN316308_1(FN316308|pid:none) Schistosoma japonicum isolate Anhu...    73   4e-12
(A6UVG8) RecName: Full=30S ribosomal protein S17e;  &CP000743_89...    70   4e-11
F64330(F64330) ribosomal protein S17B - Methanococcus jannaschii...    67   3e-10
S51665(S51665) ribosomal protein S17, cytosolic - tomato (fragme...    65   1e-09
(A3DMZ6) RecName: Full=30S ribosomal protein S17e;  &CP000575_89...    63   4e-09
(O26894) RecName: Full=30S ribosomal protein S17e;  &AE000666_79...    61   1e-08
(Q9YA67) RecName: Full=30S ribosomal protein S17e;  &B72512(B725...    60   4e-08
(Q8TUZ3) RecName: Full=30S ribosomal protein S17e;  &AE009439_16...    59   5e-08
(Q8ZYF4) RecName: Full=30S ribosomal protein S17e;  &AE009441_54...    59   9e-08
(A5ULG0) RecName: Full=30S ribosomal protein S17e;  &CP000678_83...    58   1e-07
(Q2NHW6) RecName: Full=30S ribosomal protein S17e;  &CP000102_10...    57   2e-07
(A6US72) RecName: Full=30S ribosomal protein S17e;  &CP000742_14...    57   2e-07
(A8A954) RecName: Full=30S ribosomal protein S17e;  &CP000816_27...    56   5e-07
CP000852_451(CP000852|pid:none) Caldivirga maquilingensis IC-167...    56   5e-07
(Q9V0G0) RecName: Full=30S ribosomal protein S17e;  &AJ248285_19...    55   8e-07
(Q5JDC7) RecName: Full=30S ribosomal protein S17e;  &AP006878_22...    52   7e-06
(Q46DC5) RecName: Full=30S ribosomal protein S17e;  &CP000099_11...    51   1e-05
(Q975V4) RecName: Full=30S ribosomal protein S17e;                     50   4e-05
(Q8PXL8) RecName: Full=30S ribosomal protein S17e;  &AE008384_12...    50   4e-05
(Q2FNR1) RecName: Full=30S ribosomal protein S17e;  &CP000254_14...    49   6e-05
(Q4JAX5) RecName: Full=30S ribosomal protein S17e;  &CP000077_62...    49   7e-05
(A4YIZ6) RecName: Full=30S ribosomal protein S17e;  &CP000682_22...    49   1e-04
BA000023_353(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ...    48   1e-04
(Q980K7) RecName: Full=30S ribosomal protein S17e;  &A90171(A901...    47   3e-04
CP001399_1796(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    46   6e-04
(O29351) RecName: Full=30S ribosomal protein S17e;  &AE000782_89...    46   6e-04
CP001338_455(CP001338|pid:none) Candidatus Methanosphaerula palu...    44   0.002
(Q3IS04) RecName: Full=30S ribosomal protein S17e;  &CR936257_99...    43   0.004
CP001365_2308(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4...    43   0.004
(Q12ZG3) RecName: Full=30S ribosomal protein S17e;  &CP000300_13...    42   0.007
CP000477_813(CP000477|pid:none) Methanosaeta thermophila PT, com...    42   0.007
(A3CVI8) RecName: Full=30S ribosomal protein S17e;  &CP000562_14...    42   0.012
S63968(S63968;S49027)ribosomal protein S17.eR [validated] - Halo...    42   0.012
(Q5V5R5) RecName: Full=30S ribosomal protein S17e; AltName: Full...    42   0.012
(Q97B13) RecName: Full=30S ribosomal protein S17e;                     41   0.015
(A2SST9) RecName: Full=30S ribosomal protein S17e;  &CP000559_12...    41   0.020
(B0R5L3) RecName: Full=30S ribosomal protein S17e;  &(Q9HPX1) Re...    40   0.034
AY714867_8(AY714867|pid:none) Uncultured archaeon GZfos37B2 clon...    40   0.034
(Q9HKK8) RecName: Full=30S ribosomal protein S17e;  &AL445064_26...    38   0.17
CP000932_1412(CP000932|pid:none) Campylobacter lari RM2100, comp...    37   0.38
EU016641_16(EU016641|pid:none) Uncultured Group I marine crenarc...    35   0.85
CP000883_41(CP000883|pid:none) Hemiselmis andersenii chromosome ...    35   1.1
(Q6L0U7) RecName: Full=30S ribosomal protein S17e;  &AE017261_82...    34   1.9
AE008691_1900(AE008691|pid:none) Thermoanaerobacter tengcongensi...    34   1.9
CP000826_4870(CP000826|pid:none) Serratia proteamaculans 568, co...    33   4.2
AJ248288_164(AJ248288|pid:none) Pyrococcus abyssi complete genom...    33   5.5
AM920428_1005(AM920428|pid:none) Penicillium chrysogenum Wiscons...    32   9.4
CP000411_1204(CP000411|pid:none) Oenococcus oeni PSU-1, complete...    32   9.4

>EU124942_1(EU124942|pid:none) Arenicola marina ribosomal protein
           rps17 mRNA, complete cds.
          Length = 139

 Score =  158 bits (400), Expect = 7e-38
 Identities = 77/120 (64%), Positives = 100/120 (83%)
 Frame = +1

Query: 34  MGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRR 213
           MGRVRTKT+K+AS+++IEK+Y RLT DF TNKR C+++A IPSK+LRNKIAGF THLMRR
Sbjct: 1   MGRVRTKTVKKASRVIIEKYYTRLTLDFHTNKRICEEIAIIPSKKLRNKIAGFATHLMRR 60

Query: 214 IANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTIPQIHV 393
           I  GPVRGIS KLQEEERE+RDN+VP+ SAI+++ +++D D +EMLK  ++   IP + V
Sbjct: 61  IQKGPVRGISIKLQEEERERRDNFVPEISAIESDIIEVDPDTKEMLKQ-MDMANIPGLQV 119

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 791,996,373
Number of extensions: 14763954
Number of successful extensions: 44183
Number of sequences better than 10.0: 141
Number of HSP's gapped: 44125
Number of HSP's successfully gapped: 141
Length of query: 173
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 53
Effective length of database: 662,793,784
Effective search space: 35128070552
Effective search space used: 35128070552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.51  gvh: 0.22  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.05
 nuc: 0.23  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U15128-1 is cyt
VS (DIR, S) 24
VH (FL, L) 0
VF (FL, S) 3
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 3
FC-IC (SUB) 0