Contig-U02919-1
Contig ID Contig-U02919-1
Contig update 2002. 9.13
Contig sequence
>Contig-U02919-1 (Contig-U02919-1Q) /CSM_Contig/Contig-U02919-1Q.Seq.d
AATTATTATTTCATTAGAGATACAAATAAATAAATAAAAATAAAAATAAA
AATAAAAATAAAATATAAAATATAAAAATAAAAAAAAAATAAAAATAAAA
ATAAAATAAAAATAAAAAAATATTGGAAAAATAAATAAATAAATAAATAA
ACAAACTATTGATAACAATTTAAATAAATTAAAAATGAACTCAACTAGTT
CATCAACATCAACATCATCGTCATCATTTACTTCAACTATACCAAAGAAT
GAAAATTCATCAAGTAAAGCAACACCATTCTACAGNGATCAAGTTATATT
TGNGGATGGTAAAACTTATGATCGTAAATTCACAATTTCAAAAGCATTTT
TAGATTTAGAAGATCCACCAGGNGTTAAACAATCATTCCATAAATTTGTT
CACAGAAATAGAATCTTAATATTCTCATTAATTTTACTTTATTTTGCAAT
TGATGGTAAAAATCATGGTATCAATAAATTAGTTCATCATGCATCAGTTC
TTAAAACAATTTTTGT

Gap no gap
Contig length 516
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7001388
End point 7000872
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U02919
List of clone(s)

est1=AFK533F,1,517
Translated Amino Acid sequence
iiisleiqink*k*k*k*k*nikyknkkkikikik*k*knigkink*INKQTIDNNLNKL
KMNSTSSSTSTSSSSFTSTIPKNENSSSKATPFYXDQVIFXDGKTYDRKFTISKAFLDLE
DPPGVKQSFHKFVHRNRILIFSLILLYFAIDGKNHGINKLVHHASVLKTIF


Translated Amino Acid sequence (All Frames)
Frame A:
nyyfirdtnk*ikikikikikyki*k*kknknknkikikkywknk*ink*tny**qfk*i
kneln*fininiiviiyfnytke*kfik*sntilqxssyixgw*nl*s*ihnfksifrfr
rstrx*tiip*icsqk*nlnilinftlfcn*w*kswyq*isssciss*nnfc


Frame B:
iiisleiqink*k*k*k*k*nikyknkkkikikik*k*knigkink*INKQTIDNNLNKL
KMNSTSSSTSTSSSSFTSTIPKNENSSSKATPFYXDQVIFXDGKTYDRKFTISKAFLDLE
DPPGVKQSFHKFVHRNRILIFSLILLYFAIDGKNHGINKLVHHASVLKTIF


Frame C:
llfh*ryk*inknknknknki*nikikkk*k*k*nknkkilek*ink*inklliti*in*
k*tqlvhqhqhhrhhllqlyqrmkihqvkqhhstxiklylxmvklmivnsqfqkhf*i*k
ihqxlnnhsinlfteies*ysh*fyfilqlmvkimvsin*fimhqflkqfl


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U02919-1 (Contig-U02919-1Q)
/CSM_Contig/Contig-U02919-1Q.Seq.d
(516 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U02919-1 (Contig-U02919-1Q) /CSM_Contig/Conti... 636 0.0
Contig-U10675-1 (Contig-U10675-1Q) /CSM_Contig/Conti... 48 9e-06
Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U09043-1 (Contig-U09043-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U08180-1 (Contig-U08180-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U05787-1 (Contig-U05787-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U03036-1 (Contig-U03036-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U02520-1 (Contig-U02520-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U01201-1 (Contig-U01201-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U11437-1 (Contig-U11437-1Q) /CSM_Contig/Conti... 32 0.56

>Contig-U02919-1 (Contig-U02919-1Q) /CSM_Contig/Contig-U02919-1Q.Seq.d
Length = 516

Score = 636 bits (321), Expect = 0.0
Identities = 330/330 (100%)
Strand = Plus / Plus


Query: 187 gaactcaactagttcatcaacatcaacatcatcgtcatcatttacttcaactataccaaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaactcaactagttcatcaacatcaacatcatcgtcatcatttacttcaactataccaaa 246


Query: 247 gaatgaaaattcatcaagtaaagcaacaccattctacagngatcaagttatatttgngga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaatgaaaattcatcaagtaaagcaacaccattctacagngatcaagttatatttgngga 306


Query: 307 tggtaaaacttatgatcgtaaattcacaatttcaaaagcatttttagatttagaagatcc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tggtaaaacttatgatcgtaaattcacaatttcaaaagcatttttagatttagaagatcc 366


Query: 367 accaggngttaaacaatcattccataaatttgttcacagaaatagaatcttaatattctc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 accaggngttaaacaatcattccataaatttgttcacagaaatagaatcttaatattctc 426


Query: 427 attaattttactttattttgcaattgatggtaaaaatcatggtatcaataaattagttca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 attaattttactttattttgcaattgatggtaaaaatcatggtatcaataaattagttca 486


Query: 487 tcatgcatcagttcttaaaacaatttttgt 516
||||||||||||||||||||||||||||||
Sbjct: 487 tcatgcatcagttcttaaaacaatttttgt 516


Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1 aattattatttcattagagatac 23
|||||||||||||||||||||||
Sbjct: 1 aattattatttcattagagatac 23


>Contig-U10675-1 (Contig-U10675-1Q) /CSM_Contig/Contig-U10675-1Q.Seq.d
Length = 2372

Score = 48.1 bits (24), Expect = 9e-06
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 200 tcatcaacatcaacatcatcgtcatcat 227
|||||||||||||||||||| |||||||
Sbjct: 912 tcatcaacatcaacatcatcatcatcat 939


Score = 36.2 bits (18), Expect = 0.036
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 202 atcaacatcaacatcatc 219
||||||||||||||||||
Sbjct: 896 atcaacatcaacatcatc 913


Score = 30.2 bits (15), Expect = 2.2
Identities = 24/27 (88%)
Strand = Plus / Plus


Query: 201 catcaacatcaacatcatcgtcatcat 227
||||| ||||||||||| | |||||||
Sbjct: 907 catcatcatcaacatcaacatcatcat 933


>Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Contig-U11541-1Q.Seq.d
Length = 2580

Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 203 tcaacatcaacatcatcgtcatcat 227
||||||||||||||||| |||||||
Sbjct: 241 tcaacatcaacatcatcatcatcat 265


Score = 30.2 bits (15), Expect = 2.2
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 201 catcaacatcaacatcatc 219
||||||||||| |||||||
Sbjct: 245 catcaacatcatcatcatc 263


Score = 28.2 bits (14), Expect = 8.7
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 200 tcatcaacatcaac 213
||||||||||||||
Sbjct: 262 tcatcaacatcaac 275


Score = 28.2 bits (14), Expect = 8.7
Identities = 17/18 (94%)
Strand = Plus / Plus


Query: 200 tcatcaacatcaacatca 217
|||||| |||||||||||
Sbjct: 256 tcatcatcatcaacatca 273


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5956
Number of Sequences: 6905
Number of extensions: 5956
Number of successful extensions: 897
Number of sequences better than 10.0: 330
length of query: 516
length of database: 5,674,871
effective HSP length: 16
effective length of query: 500
effective length of database: 5,564,391
effective search space: 2782195500
effective search space used: 2782195500
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.24
Homology vs DNA
Query= Contig-U02919-1 (Contig-U02919-1Q) /CSM_Contig/Contig-U02919-1Q.Seq.d
(516 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ327919) Dictyostelium discoideum cDNA clone:dda22a09, 5' ... 636 0.0 2
(AC116961) Dictyostelium discoideum chromosome 2 map 369654-... 636 0.0 2
(BZ299842) KD0376.R1 Kluyveromyces delphensis Random Genomic... 54 0.005 1
(AC179782) Strongylocentrotus purpuratus clone R3-1015J01, W... 52 0.021 1
(AC178007) Strongylocentrotus purpuratus clone R3-3052H22, W... 52 0.021 1
(AC177998) Strongylocentrotus purpuratus clone R3-3052D20, W... 52 0.021 1
(AC177175) Strongylocentrotus purpuratus clone R3-4018A3, WO... 52 0.021 1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 0.037 6
(AC106549) Rattus norvegicus clone CH230-126G7, *** SEQUENCI... 40 0.050 2
(BJ424885) Dictyostelium discoideum cDNA clone:ddv53m19, 5' ... 42 0.082 2
(FP017200) Medicago truncatula chromosome 5 clone mtf9p20, C... 50 0.084 1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ... 50 0.084 1
(DQ275158) Arabidopsis thaliana fertilization-independent se... 50 0.084 1
(CR933104) Medicago truncatula chromosome 5 clone mth2-25b3,... 50 0.084 1
(AF096095) Arabidopsis thaliana fertilization-independent se... 50 0.084 1
(AC159125) Medicago truncatula clone mth2-189o22, complete s... 50 0.084 1
(AC159124) Medicago truncatula clone mth2-172h20, complete s... 50 0.084 1
(AC149207) Medicago truncatula chromosome 2 clone mte1-60l24... 50 0.084 1
(AC124960) Medicago truncatula clone mth2-26j24, complete se... 50 0.084 1
(AC006068) Arabidopsis thaliana chromosome 2 clone T20F21 ma... 50 0.084 1
(BD223811) Novel method of regulating seed development in pl... 50 0.084 1
(BD223810) Novel method of regulating seed development in pl... 50 0.084 1
(AC122996) Rattus norvegicus clone CH230-26H5, *** SEQUENCIN... 50 0.084 1
(AC108256) Rattus norvegicus clone CH230-60I11, WORKING DRAF... 50 0.084 1
(AC178593) Strongylocentrotus purpuratus clone R3-3021M6, WO... 50 0.084 1
(AC178183) Strongylocentrotus purpuratus clone R3-3082D3, WO... 50 0.084 1
(BH349161) CH230-198I22.TV CHORI-230 Segment 1 Rattus norveg... 50 0.084 1
(DH520465) Rattus norvegicus DNA, BAC clone: RNB1-017L09, 5'... 50 0.084 1
(EL415234) CHCL392.b1_O01.ab1 CHC(LMS) Texas blueweed Helian... 50 0.084 1
(DY893266) CeleSEQ12556 Cunninghamella elegans pBluescript (... 50 0.084 1
(DY887810) CeleSEQ4518 Cunninghamella elegans pBluescript (E... 50 0.084 1
(DY887779) CeleSEQ4453 Cunninghamella elegans pBluescript (E... 50 0.084 1
(AU284661) Dictyostelium discoideum gamete cDNA clone:FC-BG1... 50 0.084 1
(BJ408016) Dictyostelium discoideum cDNA clone:dds44m09, 3' ... 50 0.084 1
(EY307151) CAWX20308.fwd CAWX Helobdella robusta Primary Ear... 50 0.084 1
(EY297402) CAWX13347.rev CAWX Helobdella robusta Primary Ear... 50 0.084 1
(AC180145) Strongylocentrotus purpuratus clone R3-4004A12, W... 40 0.10 3
(AC106915) Rattus norvegicus clone CH230-77B13, *** SEQUENCI... 38 0.18 2
(AC109392) Rattus norvegicus clone CH230-79N18, *** SEQUENCI... 38 0.19 2
(AC112610) Rattus norvegicus clone CH230-372L5, *** SEQUENCI... 38 0.19 2
(AC119622) Rattus norvegicus clone CH230-334J20, *** SEQUENC... 38 0.19 2
(AC142124) Rattus norvegicus clone CH230-304M22, WORKING DRA... 38 0.20 2
(BZ142253) CH230-412D8.TV CHORI-230 Segment 2 Rattus norvegi... 38 0.25 2
(CT867981) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.25 4
(CU468092) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.31 4
(BK001933) TPA_inf: Drosophila melanogaster HDC08426 (HDC084... 48 0.33 1
(BV212110) OMM1594 GIS Microsatellite Repeat Enriched Librar... 48 0.33 1
(AC152167) Mus musculus BAC clone RP23-330B16 from 7, comple... 48 0.33 1
(AC135081) Mus musculus BAC clone RP24-131A24 from chromosom... 48 0.33 1
(AC134440) Mus musculus BAC clone RP24-528L1 from chromosome... 48 0.33 1
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 48 0.33 1
(CT485665) Leptosphaeria maculans : genomic region surroundi... 48 0.33 1
(CT485661) Leptosphaeria maculans : genomic region surroundi... 48 0.33 1
(CT485655) Leptosphaeria maculans : genomic region surroundi... 48 0.33 1
(AL732384) Leptosphaeria maculans : genomic region surroundi... 48 0.33 1
(AL732383) Leptosphaeria maculans : genomic region surroundi... 48 0.33 1
(AJ295347) Leptosphaeria maculans Tox+/A group AD1-1.5. 48 0.33 1
(AJ294758) Leptosphaeria maculans MinLm1 minisatellite DNA. 48 0.33 1
(DJ337278) GENES ASSOCIATED WITH CANINE OSTEOARTHRITIS AND R... 48 0.33 1
(CS149253) Sequence 373 from Patent WO2005075685. 48 0.33 1
(AC188529) Canis Familiaris chromosome 10, clone XX-181J11, ... 48 0.33 1
(DQ866994) Bothriocephalus acheilognathi isolate 06/32 5.8S ... 48 0.33 1
(DQ866993) Bothriocephalus acheilognathi isolate 06/31 5.8S ... 48 0.33 1
(AJ002382) Dictyostelium discoideum mRNA for paxillin-like p... 48 0.33 1
(AF362424) Bothriocephalus acheilognathi clone OTU-J25 18S r... 48 0.33 1
(AF362423) Bothriocephalus acheilognathi clone OTU-E19 18S r... 48 0.33 1
(AF362422) Bothriocephalus acheilognathi clone OTU-E20 18S r... 48 0.33 1
(AF362421) Bothriocephalus acheilognathi clone OTU-E18 18S r... 48 0.33 1
(AF362420) Bothriocephalus acheilognathi clone OTU-K26 18S r... 48 0.33 1
(AF362419) Bothriocephalus acheilognathi clone OTU-E17 18S r... 48 0.33 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 48 0.33 1
(AC171141) Helobdella robusta clone CH306-1B3, complete sequ... 48 0.33 1
(AC154043) Drosophila melanogaster clone BACR39O11, complete... 48 0.33 1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 48 0.33 1
(AC091951) Homo sapiens chromosome 5 clone RP11-404K5, compl... 48 0.33 1
(AC091889) Homo sapiens chromosome 5 clone RP11-122F24, comp... 48 0.33 1
(AC140810) Homo sapiens chromosome 5 clone RP11-133I8, WORKI... 48 0.33 1
(AC126293) Rattus norvegicus clone CH230-157B17, WORKING DRA... 48 0.33 1
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 48 0.33 1
(AC120315) Rattus norvegicus clone CH230-398J22, WORKING DRA... 48 0.33 1
(AC115255) Rattus norvegicus clone CH230-312K10, WORKING DRA... 48 0.33 1
(AC109973) Rattus norvegicus clone CH230-66J18, *** SEQUENCI... 48 0.33 1
(AC109546) Rattus norvegicus clone CH230-228P2, *** SEQUENCI... 48 0.33 1
(AC201502) Strongylocentrotus purpuratus clone R3-3077G13, W... 48 0.33 1
(AC201182) Strongylocentrotus purpuratus clone R3-14O1, WORK... 48 0.33 1
(AC184225) Strongylocentrotus purpuratus clone R3-3048L21, W... 48 0.33 1
(AC181345) Strongylocentrotus purpuratus clone R3-40H23, WOR... 48 0.33 1
(AC181155) Strongylocentrotus purpuratus clone R3-16C24, WOR... 48 0.33 1
(AC181029) Strongylocentrotus purpuratus clone R3-3050O24, W... 48 0.33 1
(AC179996) Strongylocentrotus purpuratus clone R3-16P23, WOR... 48 0.33 1
(AC179685) Strongylocentrotus purpuratus clone R3-1021M20, W... 48 0.33 1
(AC179013) Strongylocentrotus purpuratus clone R3-1108K19, W... 48 0.33 1
(AC178830) Strongylocentrotus purpuratus clone R3-29F11, WOR... 48 0.33 1
(AC178133) Strongylocentrotus purpuratus clone R3-3078F18, W... 48 0.33 1
(AC177726) Strongylocentrotus purpuratus clone R3-1008P4, WO... 48 0.33 1
(AC177271) Strongylocentrotus purpuratus clone R3-43O10, WOR... 48 0.33 1
(AC177199) Strongylocentrotus purpuratus clone R3-4018N2, WO... 48 0.33 1
(AC176608) Strongylocentrotus purpuratus clone R3-3079G22, W... 48 0.33 1
(AC176590) Strongylocentrotus purpuratus clone R3-3077L03, W... 48 0.33 1
(AC176151) Strongylocentrotus purpuratus clone R3-2I13, WORK... 48 0.33 1
(AC176022) Strongylocentrotus purpuratus clone R3-17P11, WOR... 48 0.33 1
(AC175907) Strongylocentrotus purpuratus clone R3-3043H23, W... 48 0.33 1
(AC172391) Strongylocentrotus purpuratus clone R3-14O19, WOR... 48 0.33 1
(AC168578) Strongylocentrotus purpuratus clone R3-3065J20, W... 48 0.33 1
(AC168502) Strongylocentrotus purpuratus clone R3-3117D16, W... 48 0.33 1
(AC168375) Strongylocentrotus purpuratus clone R3-4013G22, W... 48 0.33 1
(AC015398) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.33 1
(AC010700) Drosophila melanogaster clone RPCI98-31B14, WORKI... 48 0.33 1
(AM629694) Entamoeba dispar GSS, clone dispar3b09.p1k. 48 0.33 1
(DH743642) Rattus norvegicus DNA, BAC clone: RNB1-318N10, 3'... 48 0.33 1
(DE219315) Trifolium pratense DNA, clone:RCG10209. 48 0.33 1
(CW934408) EDCCO13TR A. castellanii, 6-8 kb library from tot... 48 0.33 1
(CU185586) Equus caballus GSS, BAC clone CH241-336H20, T7 en... 48 0.33 1
(CU158587) Equus caballus GSS, BAC clone CH241-296F1, T7 end... 48 0.33 1
(EL463794) CHTS1962.b2_C11.ab1 CHT(LMS) Jerusalem artichoke ... 48 0.33 1
(EH087692) PMEBG28TR Perkinsus marinus large insert cDNA lib... 48 0.33 1
(EH010743) USDA-FP_183811 Lysiphlebus testaceipes adult whol... 48 0.33 1
(EC251334) 521506 CK01 Drosophila melanogaster cDNA clone 28... 48 0.33 1
(EB564440) AGENCOURT_51776285 D. virilis EST Drosophila viri... 48 0.33 1
(DY910796) CHAX5749.b1_J22.ab1 CHA(XYZ) common wild sunflowe... 48 0.33 1
(DT573931) EST1084571 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.33 1
(DN959009) USDA-FP/ARO_14839 Star Ruby grapefruit hot water-... 48 0.33 1
(AU060072) Dictyostelium discoideum slug cDNA, clone SLA102. 48 0.33 1
(CX947806) DH0AQA5ZG09RM1 HaDevS1 Helianthus annuus cDNA clo... 48 0.33 1
(CO334045) EK308739.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 48 0.33 1
(CF835267) UCRCS02_06P01_r Ruby Orange Ovary at Anthesis cDN... 48 0.33 1
(CF835266) UCRCS02_06P01_f Ruby Orange Ovary at Anthesis cDN... 48 0.33 1
(CD854329) DH0AMM29ZC06ZZM1 HaDevR6 Helianthus annuus cDNA c... 48 0.33 1
(CB285041) DF1898 Dermatophagoides farinae cDNA library Derm... 48 0.33 1
(C25513) Dictyostelium discoideum slug cDNA, clone SLA102. 48 0.33 1
(BJ374255) Dictyostelium discoideum cDNA clone:ddc6m05, 3' e... 48 0.33 1
(BJ354934) Dictyostelium discoideum cDNA clone:dda55p02, 3' ... 48 0.33 1
(BG639745) SD05368.3prime SD Drosophila melanogaster Schneid... 48 0.33 1
(GE546688) CCHS5592.b1_O06.ab1 CCHS Espina Barnadesia spinos... 48 0.33 1
(GE514209) CCFT9326.b1_L03.ab1 CCF(STU) sunflower Helianthus... 48 0.33 1
(EY854494) CG32-C1-003-049-A11-CT.F Mexican lime leaf, green... 48 0.33 1
(EY741855) CS00-C3-705-002-C09-CT.F Sweet orange fruit, deve... 48 0.33 1
(EY657268) CS00-C1-100-083-A09-CT.F Sweet orange leaf, green... 48 0.33 1
(EY653746) CS00-C1-100-047-H05-CT.F Sweet orange leaf, green... 48 0.33 1
(EY363779) CAWZ8956.fwd CAWZ Helobdella robusta Primary Late... 48 0.33 1
(EY352337) CAWZ18727.fwd CAWZ Helobdella robusta Primary Lat... 48 0.33 1
(EX163194) LY_YIT_DP1265 Dermatophagoides pteronyssinus cDNA... 48 0.33 1
(AZ388653) 1M0148H16R Mouse 10kb plasmid UUGC1M library Mus ... 44 0.34 2
(AC184608) Strongylocentrotus purpuratus clone R3-3084A6, WO... 42 0.40 2
(AC094378) Rattus norvegicus clone CH230-3P3, *** SEQUENCING... 46 0.46 3
(AC149933) Strongylocentrotus purpuratus clone R3-16M7, WORK... 40 0.50 4
(AC102412) Mus musculus clone RP24-377A1, WORKING DRAFT SEQU... 44 0.97 3
(AC158680) Mus musculus 6 BAC RP23-112F6 (Roswell Park Cance... 44 1.2 5
(BX936371) Zebrafish DNA sequence from clone DKEY-43K4 in li... 46 1.3 1
(BX649528) Zebrafish DNA sequence from clone DKEY-19F4 in li... 46 1.3 1
(BX571979) Zebrafish DNA sequence from clone DKEYP-51C11 in ... 46 1.3 1
(BC125715) Xenopus tropicalis hypothetical protein MGC146056... 46 1.3 1
(BV724094) 00.200516.016E02 Xenopus tropicalis (Nigerian str... 46 1.3 1
(BV311286) S236P6244FA8.T0 AlaskanMalamute Canis familiaris ... 46 1.3 1
(BV103454) MARC 14259-14260:1008709935:3 SCF - porcine splee... 46 1.3 1
(AC131724) Mus musculus BAC clone RP23-129E9 from 19, comple... 46 1.3 1
(AC108826) Mus musculus chromosome 16, clone RP23-109P11, co... 46 1.3 1
(EU350504) Tetratheca paynterae subsp. paynterae clone C130 ... 46 1.3 1
(AF080105) Pisum sativum knotted I class homeodomain protein... 46 1.3 1
(AE017342) Cryptococcus neoformans var. neoformans JEC21 chr... 46 1.3 1
(AC148097) Medicago truncatula clone mth2-15a20, complete se... 46 1.3 1
(AC140551) Medicago truncatula clone mth2-80i8, complete seq... 46 1.3 1
(AC140549) Medicago truncatula clone mth2-28o14, complete se... 46 1.3 1
(CQ580307) Sequence 8065 from Patent WO0171042. 46 1.3 1
(GC701084) Sequence 16329 from patent US 6812339. 46 1.3 1
(AY333070) Drosophila virilis antennapedia (Antp), CG10013 (... 46 1.3 1
(AY232267) Dictyostelium discoideum putative protein Roco5 (... 46 1.3 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 46 1.3 1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 46 1.3 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 46 1.3 1
(AC007291) Drosophila melanogaster, chromosome 2L, region 30... 46 1.3 1
(AP003029) Homo sapiens genomic DNA, chromosome 11q, clone:C... 46 1.3 1
(AP000843) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 46 1.3 1
(AL596210) Human DNA sequence from clone RP11-92O17 on chrom... 46 1.3 1
(AC148638) Callithrix jacchus clone CH259-510M8, WORKING DRA... 46 1.3 1
(CU694915) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(CU466243) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(CU407010) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(CR847892) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.3 1
(AP003640) Mus musculus genomic DNA, chromosome 16q clone:RP... 46 1.3 1
(AP000912) Homo sapiens genomic DNA, chromosome 11q25 clone:... 46 1.3 1
(AC232091) Solanum tuberosum chromosome 1 clone RH138F06, **... 46 1.3 1
(AC231222) Monodelphis domestica clone VMRC18-665C2, WORKING... 46 1.3 1
(AC224134) Bos taurus clone CH240-449C6, WORKING DRAFT SEQUE... 46 1.3 1
(AC216009) Zea mays chromosome 1 clone CH201-38H19; ZMMBBc00... 46 1.3 1
(AC211578) Zea mays chromosome 2 clone CH201-60C6; ZMMBBc006... 46 1.3 1
(AC209252) Zea mays chromosome 2 clone CH201-319N10; ZMMBBc0... 46 1.3 1
(AC205485) Zea mays chromosome 4 clone CH201-348A9; ZMMBBc03... 46 1.3 1
(AC198034) Zea mays chromosome 10 clone CH201-20B1; ZMMBBc00... 46 1.3 1
(AC196260) Zea mays chromosome 1 clone CH201-396I24; ZMMBBc0... 46 1.3 1
(AC185177) Felis catus clone RP86-268O18, WORKING DRAFT SEQU... 46 1.3 1
(AC181502) Strongylocentrotus purpuratus clone R3-1111D7, WO... 46 1.3 1
(AC178325) Strongylocentrotus purpuratus clone R3-3101O07, W... 46 1.3 1
(AC178013) Strongylocentrotus purpuratus clone R3-3055A17, W... 46 1.3 1
(AC177294) Strongylocentrotus purpuratus clone R3-1033E4, WO... 46 1.3 1
(AC176575) Strongylocentrotus purpuratus clone R3-3077E08, W... 46 1.3 1
(AC176032) Strongylocentrotus purpuratus clone R3-18G21, WOR... 46 1.3 1
(AC020324) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 1.3 1
(AC009339) Drosophila melanogaster strain y chromosome 2 clo... 46 1.3 1
(FI457626) CH322-28N20.x CHORI-322 Drosophila melanogaster g... 46 1.3 1
(ET175864) MUGQ_CH252P380I22Sp6_CP716_087 CHORI-252 Vervet M... 46 1.3 1
(DX333282) OR_ABa0257D22.r OR_ABa Oryza ridleyi genomic clon... 46 1.3 1
(DH470816) Monosiga ovata DNA, fosmid clone: MOF-016G23, gen... 46 1.3 1
(CR115058) Reverse strand read from insert in 3'HPRT inserti... 46 1.3 1
(CL404393) ZMMBBb0398O21f ZMMBBb (HindIII) Zea mays subsp. m... 46 1.3 1
(CL260696) ZMMBBb0619A18f ZMMBBb (HindIII) Zea mays subsp. m... 46 1.3 1
(CG889898) ZMMBBb0366O15.f ZMMBBb Zea mays subsp. mays genom... 46 1.3 1
(EL704311) CBSU3899.fwd NICHD_XGC_tropLimb_m Xenopus (Silura... 46 1.3 1
(EL481838) CHUM3844.b1_G01.ab1 CHU(LMS) puzzle sunflower Hel... 46 1.3 1
(EL464702) CHTS3650.b1_C02.ab1 CHT(LMS) Jerusalem artichoke ... 46 1.3 1
(EH728264) CNMM14716.b1_H07.ab1 CNM(LMS) spotted knapweed Ce... 46 1.3 1
(EH693503) CCIM5519.b1_N11.ab1 CCI(LMS) chicory Cichorium in... 46 1.3 1
(EH016295) USDA-FP_188809 Lysiphlebus testaceipes adult whol... 46 1.3 1
(EG694642) RCSBF35TP Castor bean cDNA library from seeds (12... 46 1.3 1
(EG669565) RCRCD53TP Castor bean cDNA library from roots, 1.... 46 1.3 1
(DN003213) JGI_CAAQ4527.fwd NIH_XGC_tropHrt1 Xenopus (Silura... 46 1.3 1
(DN002476) JGI_CAAQ4113.fwd NIH_XGC_tropHrt1 Xenopus (Silura... 46 1.3 1
(DN002388) JGI_CAAQ4063.rev NIH_XGC_tropHrt1 Xenopus (Silura... 46 1.3 1
(DN002060) JGI_CAAQ3871.fwd NIH_XGC_tropHrt1 Xenopus (Silura... 46 1.3 1
(AU073015) Dictyostelium discoideum slug cDNA, clone SSF710. 46 1.3 1
(CX877791) JGI_CAAL18665.fwd NIH_XGC_tropBrn4 Xenopus (Silur... 46 1.3 1
(CX806647) JGI_CAAJ17879.fwd NIH_XGC_tropBrn2 Xenopus (Silur... 46 1.3 1
(CX802317) JGI_CAAJ15454.fwd NIH_XGC_tropBrn2 Xenopus (Silur... 46 1.3 1
(CX530154) s13dNF44H10MJ089_246343 Methyl Jasmonate-Elicited... 46 1.3 1
(CF783778) AGENCOURT_15972868 XtSt10-30 Xenopus (Silurana) t... 46 1.3 1
(CF721753) CCAHD11TF C.neoformans strain JEC21 Cryptococcus ... 46 1.3 1
(CF720282) CCAHP13TF C.neoformans strain JEC21 Cryptococcus ... 46 1.3 1
(CF697098) CCAI509TF C.neoformans strain JEC21 Cryptococcus ... 46 1.3 1
(CF695067) CCABH29TF C.neoformans strain JEC21 Cryptococcus ... 46 1.3 1
(CF694067) CCAC416TF C.neoformans strain JEC21 Cryptococcus ... 46 1.3 1
(CF678542) CCABM86TF C.neoformans strain JEC21 Cryptococcus ... 46 1.3 1
(CF245416) Fcylcold161 Fragilariopsis cylindrus SMART cDNA l... 46 1.3 1
(BW720445) Branchiostoma floridae cDNA, adult clone:bfad006c... 46 1.3 1
(BQ526293) NISC_no15e08.y1 NICHD_XGC_Emb8 Xenopus (Silurana)... 46 1.3 1
(AI398111) NCSP1F5T3 Subtracted Perithecial Neurospora crass... 46 1.3 1
(AA933304) SWBmL3SA487T3 Brugia malayi L3 subtracted cDNA li... 46 1.3 1
(AW586489) EST318184 MHAM Medicago truncatula/Glomus versifo... 46 1.3 1
(EY377249) CAXA16614.fwd CAXA Helobdella robusta Subtracted ... 46 1.3 1
(EY377248) CAXA16614.rev CAXA Helobdella robusta Subtracted ... 46 1.3 1
(EY327290) CAWY12523.fwd CAWY Helobdella robusta Subtracted ... 46 1.3 1
(EY315418) CAWX26041.rev CAWX Helobdella robusta Primary Ear... 46 1.3 1
(EY314038) CAWX25284.rev CAWX Helobdella robusta Primary Ear... 46 1.3 1
(EY308595) CAWX21118.rev CAWX Helobdella robusta Primary Ear... 46 1.3 1
(EW279467) rjca30c_c5.y1 jca Sus scrofa cDNA 5', mRNA sequence. 46 1.3 1
(AC178570) Strongylocentrotus purpuratus clone R3-3027A17, W... 36 1.7 4
(EH782919) CNSS21763.b1_E18.ab1 CNS(LMS) yellow starthistle ... 32 1.8 3
(AC156657) Bos taurus clone CH240-61F3, WORKING DRAFT SEQUEN... 40 1.8 2
(EU912438) Vaucheria litorea chloroplast, complete genome. 34 1.8 5
(CG789445) ZMMBBb0263H14.f ZMMBBb Zea mays subsp. mays genom... 40 1.9 2
(AC098759) Rattus norvegicus clone CH230-167F9, *** SEQUENCI... 40 1.9 4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 42 1.9 7
(ED684305) GM_WBb0018K14.f GM_WBb Glycine max genomic clone ... 40 1.9 2
(AC098603) Rattus norvegicus clone CH230-139E21, WORKING DRA... 44 2.0 4
(ED758736) GM_WBb0128I08.f GM_WBb Glycine max genomic clone ... 40 2.1 2
(ED719458) GM_WBb0071C08.r GM_WBb Glycine max genomic clone ... 40 2.1 2
(AZ208128) SP_0136_B1_D12_SP6E Strongylocentrotus purpuratus... 42 2.2 2
(AC207195) Zea mays chromosome 1 clone CH201-299L4; ZMMBBc02... 38 2.3 3
(AC190529) Zea mays chromosome 2 clone ZMMBBb-600M11; ZMMBBb... 32 2.6 2
(AC176688) Strongylocentrotus purpuratus clone R3-112B2, WOR... 32 2.6 2
(AC173358) Strongylocentrotus purpuratus clone R3-1116I4, WO... 40 2.7 3
(AC114392) Rattus norvegicus clone CH230-58G14, *** SEQUENCI... 40 2.8 4
(AC192458) Zea mays chromosome 6 clone ZMMBBb-120I4; ZMMBBb0... 44 2.8 3
(AC168645) Strongylocentrotus purpuratus clone R3-3017K16, W... 44 2.9 3
(AC181518) Strongylocentrotus purpuratus clone R3-62E1, WORK... 40 3.3 3
(AC151498) Dasypus novemcinctus clone VMRC5-119C6, WORKING D... 40 3.4 4
(EJ519663) 1092955129807 Global-Ocean-Sampling_GS-29-01-01-1... 34 3.4 2
(EJ547904) 1092959415750 Global-Ocean-Sampling_GS-29-01-01-1... 34 3.4 2
(EX611539) 255375953 Pea aphid whole body normalized full le... 32 3.4 2
(FF312075) 279384469 Pea aphid whole body normalized full le... 32 3.4 2
(GE611157) CCPX7992.b1_P06.ab1 CCP(UWX) Globe Artichoke Cyna... 32 3.4 2
(AC178381) Strongylocentrotus purpuratus clone R3-3107H19, W... 40 3.5 4
(AC181710) Strongylocentrotus purpuratus clone R3-1039N13, W... 40 3.7 2
(AC225629) Zea mays chromosome 10 clone ZMMBBb-6P3; ZMMBBb00... 44 4.0 2
(Z48334) Caenorhabditis elegans Cosmid F10B5. 42 4.2 2
(CN631301) taf53g04.y1 Hydra EST Darmstadt I Hydra magnipapi... 40 4.4 2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 4.5 5
(AC168443) Strongylocentrotus purpuratus clone R3-39C17, WOR... 38 4.7 2
(AC168805) Strongylocentrotus purpuratus clone R3-13H12, WOR... 40 4.9 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 5.1 8
(EF427384) Salmo salar clone BAC CHORI214-92I04, complete se... 44 5.2 1
(EF210363) Salmo salar clone CH214-714P22 MHC Class I (Sasa-... 44 5.2 1
(AL935317) Zebrafish DNA sequence from clone CH211-199I10. 44 5.2 1
(AL929299) Zebrafish DNA sequence from clone BUSM1-SL6. 44 5.2 1
(AC135668) Mus musculus BAC clone RP23-280P7 from chromosome... 44 5.2 1
(AC116999) Mus musculus BAC clone RP23-28L10 from 19, comple... 44 5.2 1
(AJ296728) Picea abies ATC microsatellite DNA, clone EATC2G05. 44 5.2 1
(AJ271438) Prunus persica mRNA for plasma membrane H+ ATPase... 44 5.2 1
(AC217788) Solanum lycopersicum chromosome 9 clone C09HBa017... 44 5.2 1
(AC182567) Mimulus guttatus clone MGBa-50E20, complete seque... 44 5.2 1
(DL173738) Methods for Identifying the Target of a Compound ... 44 5.2 1
(AX489298) Sequence 6598 from Patent WO02053728. 44 5.2 1
(AR545344) Sequence 475 from patent US 6747137. 44 5.2 1
(AC184823) Canis Familiaris chromosome 8, clone XX-20B16, co... 44 5.2 1
(AY775956) Caenorhabditis remanei qua-1 protein mRNA, comple... 44 5.2 1
(AY484462) Dictyostelium discoideum kinesin family member 8 ... 44 5.2 1
(AC107487) Drosophila melanogaster 3L BAC RP98-10D20 (Roswel... 44 5.2 1
(AB025783) Octopus vulgaris OvGas mRNA for G protein alpha s... 44 5.2 1
(AL365229) Human DNA sequence from clone RP11-723K16 on chro... 44 5.2 1
(AC126471) Homo sapiens 12 BAC RP11-629O19 (Roswell Park Can... 44 5.2 1
(AC152583) Bos taurus clone CH240-13L2, *** SEQUENCING IN PR... 44 5.2 1
(AC150405) Branchiostoma floridae clone CH302-50F24, WORKING... 44 5.2 1
(AC145225) Zea mays clone ZMMBBc0063A01, *** SEQUENCING IN P... 44 5.2 1
(AC142031) Rattus norvegicus clone CH230-252D9, *** SEQUENCI... 44 5.2 1
(AC137347) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 44 5.2 1
(AC136269) Rattus norvegicus clone CH230-455A5, *** SEQUENCI... 44 5.2 1
(AC133852) Rattus norvegicus clone CH230-5O14, WORKING DRAFT... 44 5.2 1
(AC131224) Rattus norvegicus clone CH230-154I12, *** SEQUENC... 44 5.2 1
(AC123501) Rattus norvegicus clone CH230-136D22, *** SEQUENC... 44 5.2 1
(AC122590) Rattus norvegicus clone CH230-155G23, *** SEQUENC... 44 5.2 1
(AC117066) Rattus norvegicus clone CH230-309D4, *** SEQUENCI... 44 5.2 1
(AC115347) Rattus norvegicus clone CH230-61F18, *** SEQUENCI... 44 5.2 1
(AC110973) Rattus norvegicus clone CH230-111K9, WORKING DRAF... 44 5.2 1
(AC110972) Rattus norvegicus clone CH230-71J5, WORKING DRAFT... 44 5.2 1
(AC110460) Rattus norvegicus clone CH230-275F9, *** SEQUENCI... 44 5.2 1
(AC109703) Rattus norvegicus clone CH230-218F15, *** SEQUENC... 44 5.2 1
(AC107582) Rattus norvegicus clone CH230-29B17, *** SEQUENCI... 44 5.2 1
(AC107475) Rattus norvegicus clone CH230-221E18, *** SEQUENC... 44 5.2 1
(AC106666) Rattus norvegicus clone CH230-101E22, *** SEQUENC... 44 5.2 1
(AC097920) Rattus norvegicus clone CH230-48I7, *** SEQUENCIN... 44 5.2 1
(AC095699) Rattus norvegicus clone CH230-9B16, WORKING DRAFT... 44 5.2 1
(AC095377) Rattus norvegicus clone CH230-2E12, WORKING DRAFT... 44 5.2 1
(CU855496) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.2 1
(AC091662) Rattus norvegicus clone CH230-3F16, *** SEQUENCIN... 44 5.2 1
(AC234162) Zea mays chromosome 3 clone CH201-274F7; ZMMBBc02... 44 5.2 1
(AC226215) Zea mays chromosome unknown clone CH201-431H20; Z... 44 5.2 1
(AC226201) Zea mays chromosome 3 clone ZMMBBb-411F8; ZMMBBb0... 44 5.2 1
(AC219090) Zea mays chromosome 9 clone ZMMBBb-174D10; ZMMBBb... 44 5.2 1
(AC218836) Bos taurus clone CH240-292A19, WORKING DRAFT SEQU... 44 5.2 1
(AC215304) Zea mays chromosome 3 clone CH201-517I11; ZMMBBc0... 44 5.2 1
(AC213399) Zea mays chromosome 3 clone CH201-280C17; ZMMBBc0... 44 5.2 1
(AC212978) Zea mays chromosome 8 clone CH201-97B6; ZMMBBc009... 44 5.2 1
(AC212444) Zea mays chromosome 2 clone CH201-237F24; ZMMBBc0... 44 5.2 1
(AC212197) Zea mays chromosome 3 clone CH201-554A18; ZMMBBc0... 44 5.2 1
(AC211706) Zea mays chromosome 9 clone CH201-102C9; ZMMBBc01... 44 5.2 1
(AC210973) Zea mays chromosome 7 clone CH201-326L3; ZMMBBc03... 44 5.2 1
(AC210810) Zea mays chromosome 4 clone CH201-298O10; ZMMBBc0... 44 5.2 1
(AC210214) Zea mays chromosome 9 clone ZMMBBb-288K13; ZMMBBb... 44 5.2 1
(AC209852) Zea mays chromosome 3 clone CH201-108J15; ZMMBBc0... 44 5.2 1
(AC209399) Zea mays chromosome 3 clone CH201-498B13; ZMMBBc0... 44 5.2 1
(AC209251) Zea mays chromosome 9 clone CH201-5F9; ZMMBBc0005... 44 5.2 1
(AC208665) Zea mays chromosome 1 clone CH201-376H17; ZMMBBc0... 44 5.2 1
(AC208636) Zea mays chromosome 3 clone CH201-25G23; ZMMBBc00... 44 5.2 1
(AC207286) Zea mays chromosome 5 clone CH201-106A4; ZMMBBc01... 44 5.2 1
(AC206775) Zea mays chromosome 1 clone CH201-69I6; ZMMBBc006... 44 5.2 1
(AC206326) Zea mays chromosome 1 clone CH201-489D3; ZMMBBc04... 44 5.2 1
(AC206290) Zea mays chromosome 1 clone CH201-120K24; ZMMBBc0... 44 5.2 1
(AC205588) Zea mays chromosome 1 clone ZMMBBb-7F3; ZMMBBb000... 44 5.2 1
(AC205520) Zea mays chromosome 3 clone CH201-15E3; ZMMBBc001... 44 5.2 1
(AC204748) Zea mays chromosome 5 clone CH201-422C21; ZMMBBc0... 44 5.2 1
(AC203983) Zea mays chromosome 2 clone CH201-365E4; ZMMBBc03... 44 5.2 1
(AC202113) Zea mays chromosome 7 clone ZMMBBb-347N6; ZMMBBb0... 44 5.2 1
(AC200959) Strongylocentrotus purpuratus clone R3-1111E4, WO... 44 5.2 1
(AC200673) Zea mays chromosome 1 clone CH201-113P6; ZMMBBc01... 44 5.2 1
(AC200542) Zea mays chromosome 1 clone ZMMBBb-386P1; ZMMBBb0... 44 5.2 1
(AC199348) Zea mays chromosome 10 clone CH201-324M3; ZMMBBc0... 44 5.2 1
(AC199084) Zea mays chromosome 7 clone CH201-215C17; ZMMBBc0... 44 5.2 1
(AC198868) Zea mays chromosome 1 clone CH201-250J7; ZMMBBc02... 44 5.2 1
(AC198767) Zea mays chromosome 6 clone CH201-395P14; ZMMBBc0... 44 5.2 1
(AC198499) Zea mays chromosome 10 clone CH201-23N13; ZMMBBc0... 44 5.2 1
(AC198383) Zea mays chromosome unknown clone CH201-208I16; Z... 44 5.2 1
(AC197672) Zea mays chromosome 10 clone ZMMBBb-620F14; ZMMBB... 44 5.2 1
(AC197525) Zea mays chromosome 7 clone CH201-393F7; ZMMBBc03... 44 5.2 1
(AC196408) Zea mays chromosome 9 clone CH201-67A20; ZMMBBc00... 44 5.2 1
(AC195579) Zea mays chromosome 3 clone ZMMBBb-184P16; ZMMBBb... 44 5.2 1
(AC195348) Zea mays chromosome 3 clone CH201-38E18; ZMMBBc00... 44 5.2 1
(AC195238) Zea mays chromosome 4 clone CH201-183N11, *** SEQ... 44 5.2 1
(AC194843) Zea mays chromosome 1 clone CH201-252D5; ZMMBBc02... 44 5.2 1
(AC194202) Zea mays chromosome 3 clone CH201-261M1; ZMMBBc02... 44 5.2 1
(AC191777) Zea mays chromosome 4 clone ZMMBBb-297K23; ZMMBBb... 44 5.2 1
(AC191280) Zea mays chromosome 2 clone CH201-129E10; ZMMBBc0... 44 5.2 1
(AC191176) Zea mays chromosome 3 clone CH201-234B22; ZMMBBc0... 44 5.2 1
(AC190934) Zea mays chromosome 1 clone CH201-39N2; ZMMBBc003... 44 5.2 1
(AC190899) Zea mays chromosome 10 clone ZMMBBb-621F3; ZMMBBb... 44 5.2 1
(AC190893) Zea mays chromosome 1 clone CH201-539J15; ZMMBBc0... 44 5.2 1
(AC190652) Zea mays chromosome 3 clone CH201-163O7; ZMMBBc01... 44 5.2 1
(AC189846) Atelerix albiventris clone LB4-514O5, WORKING DRA... 44 5.2 1
(AC188825) Zea mays chromosome 9 clone CH201-186P12; ZMMBBc0... 44 5.2 1
(AC187208) Zea mays chromosome 9 clone ZMMBBb-52O2; ZMMBBb00... 44 5.2 1
(AC187096) Zea mays chromosome 8 clone CH201-179D18; ZMMBBc0... 44 5.2 1
(AC187088) Zea mays chromosome 6 clone CH201-191G19; ZMMBBc0... 44 5.2 1
(AC185651) Zea mays chromosome 4 clone CH201-347G1; ZMMBBc03... 44 5.2 1
(AC184556) Strongylocentrotus purpuratus clone R3-7B10, WORK... 44 5.2 1
(AC184461) Strongylocentrotus purpuratus clone R3-4003J3, WO... 44 5.2 1
(AC184321) Strongylocentrotus purpuratus clone R3-4005K7, WO... 44 5.2 1
(AC184142) Zea mays chromosome 2 clone CH201-1F12; gnl|WUGSC... 44 5.2 1
(AC181544) Strongylocentrotus purpuratus clone R3-7E23, WORK... 44 5.2 1
(AC181523) Strongylocentrotus purpuratus clone R3-64O23, WOR... 44 5.2 1
(AC181144) Strongylocentrotus purpuratus clone R3-16F2, WORK... 44 5.2 1
(AC180378) Strongylocentrotus purpuratus clone R3-3113D22, W... 44 5.2 1
(AC180100) Strongylocentrotus purpuratus clone R3-4008A19, W... 44 5.2 1
(AC179061) Strongylocentrotus purpuratus clone R3-4005N21, W... 44 5.2 1
(AC178847) Strongylocentrotus purpuratus clone R3-26F8, WORK... 44 5.2 1
(AC178127) Strongylocentrotus purpuratus clone R3-3078B4, WO... 44 5.2 1
(AC177819) Zea mays chromosome 1 clone CH201-237H1; gnl|WUGS... 44 5.2 1
(AC177398) Strongylocentrotus purpuratus clone R3-1031H15, W... 44 5.2 1
(AC177156) Strongylocentrotus purpuratus clone R3-4015D06, W... 44 5.2 1
(AC177098) Strongylocentrotus purpuratus clone R3-1037N15, W... 44 5.2 1
(AC176837) Strongylocentrotus purpuratus clone R3-3120B11, W... 44 5.2 1
(AC176586) Strongylocentrotus purpuratus clone R3-3077J04, W... 44 5.2 1
(AC176513) Strongylocentrotus purpuratus clone R3-3073A17, W... 44 5.2 1
(AC176317) Strongylocentrotus purpuratus clone R3-3054G10, W... 44 5.2 1
(AC176146) Strongylocentrotus purpuratus clone R3-2F1, WORKI... 44 5.2 1
(AC174871) Strongylocentrotus purpuratus clone R3-3112P21, W... 44 5.2 1
(AC168594) Strongylocentrotus purpuratus clone R3-3065D10, W... 44 5.2 1
(AC019575) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 5.2 1
(AK247546) Solanum lycopersicum cDNA, clone: LEFL1045DA10, H... 44 5.2 1
(AK247541) Solanum lycopersicum cDNA, clone: LEFL1045AB04, H... 44 5.2 1
(BH328892) CH230-93P16.TJ CHORI-230 Segment 1 Rattus norvegi... 44 5.2 1
(AZ208436) SP_0151_A1_A09_SP6E Strongylocentrotus purpuratus... 44 5.2 1
(FP088180) Brassica napus GSS, clone JBnB152D01, end read, p... 44 5.2 1
(FI204272) CccaBa013-B4TR CccABa Cajanus cajan genomic clone... 44 5.2 1
(FI199123) CccaBa031-F5TR CccABa Cajanus cajan genomic clone... 44 5.2 1
(EK099685) 1092963005704 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.2 1
(EI194380) ZMMBBb0635D03.fv ZMMBB_VAL Zea mays genomic clone... 44 5.2 1
(ED984064) hfqb0635D03.fq.scf ZMMBB_VAL Zea mays genomic clo... 44 5.2 1
(ED548853) ZMMBBc0038E18.rq ZMMBB_VAL Zea mays genomic clone... 44 5.2 1
(DX911283) KBrH048E01F KBrH, Brassica rapa HindIII BAC libra... 44 5.2 1
(DX599902) ZMMBBb0635D03.fq ZMMBB_VAL Zea mays genomic clone... 44 5.2 1
(DX599872) ZMMBBb0620F14.fq ZMMBB_VAL Zea mays genomic clone... 44 5.2 1
(DE201333) Branchiostoma floridae DNA, clone: CH302-086_N13_... 44 5.2 1
(DE193293) Branchiostoma floridae DNA, clone: CH302-074_E18_... 44 5.2 1
(DE033157) Branchiostoma floridae DNA, clone: CH302-051G14.R... 44 5.2 1
(DE002069) Branchiostoma floridae DNA, clone: CH302-005A21.R... 44 5.2 1
(DE001253) Branchiostoma floridae DNA, clone: CH302-003N22.R... 44 5.2 1
(CZ394814) ZMMBF0174G07f ZMMBF Zea mays genomic clone ZMMBF0... 44 5.2 1
(CZ338800) ZMMBF0107C09r ZMMBF Zea mays genomic clone ZMMBF0... 44 5.2 1
(CZ320080) ZMMBF0021P13r ZMMBF Zea mays genomic clone ZMMBF0... 44 5.2 1
(CL453968) ZMMBBb0485L17f ZMMBBb (HindIII) Zea mays subsp. m... 44 5.2 1
(CL443615) ZMMBBb0461F04f ZMMBBb (HindIII) Zea mays subsp. m... 44 5.2 1
(CL264397) ZMMBBb0620F14f ZMMBBb (HindIII) Zea mays subsp. m... 44 5.2 1
(CL258590) ZMMBBb0611J04f ZMMBBb (HindIII) Zea mays subsp. m... 44 5.2 1
(CG996951) ZMMBBb0528O06f ZMMBBb (HindIII) Zea mays subsp. m... 44 5.2 1
(CG917098) ZMMBBb0383O11.f ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CG911678) ZMMBBb0363L20.r ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CG734488) ZMMBBb0287F24.f ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CG412299) ZMMBBb0271N04.f ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CG406664) ZMMBBb0265J21.r ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CG402020) ZMMBBb0243M23.f ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CG401576) ZMMBBb0243A22.f ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CG288144) OG0BH93TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(CC900013) ZMMBBb0233F08.r ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CC898041) ZMMBBb0225M18.f ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CC862173) NDL.118P2.SP6 Notre Dame Liverpool Aedes aegypti ... 44 5.2 1
(CC831893) ZMMBBb0183H06.f ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CC825190) ZMMBBb0169J23.f ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CC760102) ZMMBBb0148E07.r ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CC751003) ZMMBBb0131N07.f ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(CC696578) OGVBH71TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(CC343072) OGRAH68TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(CC148478) ZMMBBb0012P01.r ZMMBBb Zea mays subsp. mays genom... 44 5.2 1
(BZ999943) pPGSseq-17D11 pPGS Arachis hypogaea subsp. hypoga... 44 5.2 1
(BZ726534) OGEDS40TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(BZ726357) OGEBZ28TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(BZ712562) OGEAI27TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(BZ712553) OGEAI27TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(BZ654334) OGAMS63TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(BZ532157) OGAHC61TC ZM2_0.7_1.5_KB Zea mays genomic clone Z... 44 5.2 1
(BZ525475) OGAFC55TC ZM2_0.7_1.5_KB Zea mays genomic clone Z... 44 5.2 1
(BZ418713) if26d03.b1 WGS-ZmaysF (DH5a methyl filtered) Zea ... 44 5.2 1
(BZ414530) if26d03.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ... 44 5.2 1
(BZ405444) OGABE62TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(BZ405432) OGABE62TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(BZ404509) OGABS48TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.2 1
(BZ323337) ia77a10.g1 WGS-ZmaysF (JM107 adapted methyl filte... 44 5.2 1
(BZ316819) ia77a10.b1 WGS-ZmaysF (JM107 adapted methyl filte... 44 5.2 1
(BH837356) LMCR050013A03f Zea mays L. Zea mays genomic clone... 44 5.2 1
(BH660882) BOHYD40TF BO_2_3_KB Brassica oleracea genomic clo... 44 5.2 1
(EL428940) CHCM8172.b1_H03.ab1 CHC(LMS) Texas blueweed Helia... 44 5.2 1
(EL428315) CHCM7601.b1_B06.ab1 CHC(LMS) Texas blueweed Helia... 44 5.2 1
(EL413817) CHCL11320.b1_P21.ab1 CHC(LMS) Texas blueweed Heli... 44 5.2 1
(EL373852) CFFM11086.b1_L12.ab1 CFF(LMS) safflower Carthamus... 44 5.2 1
(EL373588) CFFM10819.b1_E17.ab1 CFF(LMS) safflower Carthamus... 44 5.2 1
(EH719708) CNML6187.b1_E11.ab1 CNM(LMS) spotted knapweed Cen... 44 5.2 1
(EH211481) USDA-FP_174271 WHMH (pink hibiscus mealybug) Maco... 44 5.2 1
(EG246369) MSAM169037_3502_2652 LCM-dissected maize inbred l... 44 5.2 1
(EG192839) MSAM011313_3758_0777 LCM-dissected maize inbred l... 44 5.2 1
(EE653668) CHES2853.b1_J17.ab1 CHE(LMS) serpentine sunflower... 44 5.2 1
(EE463356) BNSCS2CT_UP_009_B11_05JAN2005_093 Brassica napus ... 44 5.2 1
(EE262019) G11_G11ff5d21_pDNRf_514846 Myzus persicae, line F... 44 5.2 1
(EC090068) 434180 CK01 Drosophila melanogaster cDNA clone 18... 44 5.2 1
(EB459076) 1099435218099 12-DrosW-std-1P6Kb Drosophila willi... 44 5.2 1
(DY894699) CeleSEQ14331 Cunninghamella elegans pBluescript (... 44 5.2 1
(DY894479) CeleSEQ14059 Cunninghamella elegans pBluescript (... 44 5.2 1
(DY893920) CeleSEQ13383 Cunninghamella elegans pBluescript (... 44 5.2 1
(DY892982) CeleSEQ12131 Cunninghamella elegans pBluescript (... 44 5.2 1
(DY890871) CeleSEQ7344 Cunninghamella elegans pBluescript (E... 44 5.2 1
(DY887800) CeleSEQ4497 Cunninghamella elegans pBluescript (E... 44 5.2 1
(DY885447) CeleSEQ693 Cunninghamella elegans pBluescript (Ec... 44 5.2 1
(DV448809) CV01025B2B05.f1 CV01-normalized library Manihot e... 44 5.2 1
(DV447001) CV01020B2B09.f1 CV01-normalized library Manihot e... 44 5.2 1
(DV095595) 327-384-57_J12_M13-FP Nematostella vectensis norm... 44 5.2 1
(DR776488) BAAC-PNP1251K09.g1 C.remanei EST SB146 Caenorhabd... 44 5.2 1
(DC613089) Lethenteron japonicum cDNA, clone: Lamprey_liver_... 44 5.2 1
(DC612168) Lethenteron japonicum cDNA, clone: Lamprey_liver_... 44 5.2 1
(DB934706) Manihot esculenta mRNA, clone: CAS01_041_H07, 5'end. 44 5.2 1
(DB884315) Populus nigra mRNA, clone: PnFL2-053_I23, 5'end. 44 5.2 1
(DB694373) Solanum lycopersicum cDNA, clone: LEFL1051AH12, 5... 44 5.2 1
(DB684768) Solanum lycopersicum cDNA, clone: LEFL1020DE06, 5... 44 5.2 1
(CX668221) UCRCP01_036_D04_T3 Swingle citrumelo nematode-cha... 44 5.2 1
(CV968006) PC030G10 infected tomato, center of lesion 3 dpi ... 44 5.2 1

>(BJ327919) Dictyostelium discoideum cDNA clone:dda22a09, 5' end,
single read.
Length = 517

Score = 636 bits (321), Expect(2) = 0.0
Identities = 330/330 (100%)
Strand = Plus / Plus


Query: 187 gaactcaactagttcatcaacatcaacatcatcgtcatcatttacttcaactataccaaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaactcaactagttcatcaacatcaacatcatcgtcatcatttacttcaactataccaaa 246


Query: 247 gaatgaaaattcatcaagtaaagcaacaccattctacagngatcaagttatatttgngga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaatgaaaattcatcaagtaaagcaacaccattctacagngatcaagttatatttgngga 306


Query: 307 tggtaaaacttatgatcgtaaattcacaatttcaaaagcatttttagatttagaagatcc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tggtaaaacttatgatcgtaaattcacaatttcaaaagcatttttagatttagaagatcc 366


Query: 367 accaggngttaaacaatcattccataaatttgttcacagaaatagaatcttaatattctc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 accaggngttaaacaatcattccataaatttgttcacagaaatagaatcttaatattctc 426


Query: 427 attaattttactttattttgcaattgatggtaaaaatcatggtatcaataaattagttca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 attaattttactttattttgcaattgatggtaaaaatcatggtatcaataaattagttca 486


Query: 487 tcatgcatcagttcttaaaacaatttttgt 516
||||||||||||||||||||||||||||||
Sbjct: 487 tcatgcatcagttcttaaaacaatttttgt 516

Score = 46.1 bits (23), Expect(2) = 0.0
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1 aattattatttcattagagatac 23
|||||||||||||||||||||||
Sbjct: 1 aattattatttcattagagatac 23

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 480,086,361
Number of extensions: 30157577
Number of successful extensions: 2705702
Number of sequences better than 10.0: 624
Length of query: 516
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 493
Effective length of database: 99,442,330,388
Effective search space: 49025068881284
Effective search space used: 49025068881284
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.21
Homology vs Protein
Query= Contig-U02919-1 (Contig-U02919-1Q) /CSM_Contig/Contig-U02919-1Q.Seq.d
(516 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116961_1(AC116961|pid:none) Dictyostelium discoideum chromosom... 184 9e-46

>AC116961_1(AC116961|pid:none) Dictyostelium discoideum chromosome 2
map 369654-374956 strain AX4, complete sequence.
Length = 463

Score = 184 bits (468), Expect = 9e-46
Identities = 90/92 (97%), Positives = 90/92 (97%)
Frame = +2

Query: 239 IPKNENSSSKATPFYXDQVIFXDGKTYDRKFTISKAFLDLEDPPGVKQSFHKFVHRNRIL 418
IPKNENSSSKATPFY DQVIF DGKTYDRKFTISKAFLDLEDPPGVKQSFHKFVHRNRIL
Sbjct: 19 IPKNENSSSKATPFYSDQVIFVDGKTYDRKFTISKAFLDLEDPPGVKQSFHKFVHRNRIL 78

Query: 419 IFSLILLYFAIDGKNHGINKLVHHASVLKTIF 514
IFSLILLYFAIDGKNHGINKLVHHASVLKTIF
Sbjct: 79 IFSLILLYFAIDGKNHGINKLVHHASVLKTIF 110

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 448,330,350
Number of extensions: 6414454
Number of successful extensions: 15131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15131
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 1,051,180,864
Length adjustment: 119
Effective length of query: 53
Effective length of database: 666,030,343
Effective search space: 35299608179
Effective search space used: 35299608179
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.52 gvh: 0.48 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.47 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: mitochondrial
32.0 %: cytoplasmic
8.0 %: nuclear
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for Contig-U02919-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0