Contig-U15119-1
Contig ID Contig-U15119-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15119-1 (Contig-U15119-1Q) /CSM_Contig/Contig-U15119-1Q.Seq.d
AAACACACAGGGTATTTCAAAATGAGCAAAATCTCAAGCGACCAAGTTAG
ATCAATCGTCTCCCAACTTTTCAAAGAAGCACAAGAATCCAAAAGAGGTT
TCTTAGAAACTGTTGAACTCCAAATCAACTTAAAGAATTATGATACCAAG
AAAGATAAGCGTTTCTCTGGTCAAATCAAAATCGGTACCGTCACCAAACC
AAAATTAAGCGTTTGTGTCTTTGCTGATCAACAACATTGTGATGAAGCCC
ACTAAAATCGGTGCTGAATTCATGGATATTGAAGCCTTAAAGAAAATCGG
TCCAAAGAACAAGAAAGCCATCAAGAAGCTCTCATGAGAAATACGATGCT
TTCTTAGCCTCTGAATCTATCTTACGTCAAGTTCCAAAACTCTTAGGTCC
AGGTCTCAACAAGGTCGGTAAATTCCCAACCCTCCTTACTCACTCTGAAG
ATATGGCCTCAAAGATCAATGATGTCAAATCAACCGTCAAATTCCAACTT
AAGAAAGTCTTATGTTTAGCCGTCGCTGTCGGTCACATCGAATTAACTGA
AAGAGAAGTTGCCACCAACATCATTCAATCAATTAATTTCTTAGTCTCCC
TCTTAAAGAAAGGATGGCAAAATATTAAGACTTTATACGTCAAAACCTCT
ATGGGTCCATCACACCGTGTCTACTAAGGATACTGTTGGTTTCTAATACA
CCAATACTGGGTTAATAGGAGTGTTTGATACTGTCATTTTTGACTTTATT
GACATTTTGTTTCCCATCTATTGGAAGCTAAAAAATTAACTTATAATAAA
AAAATACCCTTTTTTAATATAAACAAAAAAAAAAAAAAAAAAAAAAAAAG
TTTGTTCCTTGGCCGGGACCNCCTTTAA

Gap no gap
Contig length 878
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7519573
End point 7520418
Strand (PLUS/MINUS) PLUS
Number of clones 18
Number of EST 17
Link to clone list U15119
List of clone(s)

est1=VFL861E,-15,766
est2=FCL-AA22E,19,860
est3=FC-AH14F,20,676
est4=FC-BQ02E,20,850
est5=FC-IC0845F,187,859
est6=FC-IC1111F,187,832
est7=FC-IC1388F,187,878
est8=FC-IC1768Z,187,628
est9=VSC391Z,306,857
est10=VSD564F,312,829
est11=VSD564Z,312,815
est12=VSJ259F,512,829
est13=VSJ259Z,512,812
est14=VSH176Z,620,814
est15=VSJ201E,635,812
est16=VSH176F,659,829
est17=FC-IC0845Z,727,856
Translated Amino Acid sequence
thrvfqneqnlkrps*inrlptfqrstriqkrflrnc*tpnqlkel*yqer*aflwsnqn
ryrhqtkikrlclc*sttl**splksvlnswilkp*RKSVQRTRKPSRSSHEKYDAFLAS
ESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIE
LTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY*gycwflihqywvnrs
v*ychf*ly*hfvshlleakkltynkkipffninkkkkkkkkslflgrdxl*


Translated Amino Acid sequence (All Frames)
Frame A:
khtgyfkmskissdqvrsivsqlfkeaqeskrgfletvelqinlknydtkkdkrfsgqik
igtvtkpklsvcvfadqqhcdeah*nrc*ihgy*slkenrskeqeshqealmrntmls*p
lnlsyvkfqns*vqvstrsvnsqpslltlkiwpqrsmmsnqpsnsnlrksyv*pslsvts
n*lkeklpptsfnqlis*sps*rkdgkilrlytskplwvhhtvstkdtvgf*ytntglig
vfdtvifdfidilfpiywklkn*liikkypfli*tkkkkkkkkvcslagtxf


Frame B:
ntqgisk*aksqatkldqsspnfskkhknpkevs*kllnskst*rimiprkisvslvksk
svpspnqn*afvsllinnivmkptkigaefmdiealkkigpknkkaikkls*eircflsl
*iyltsssktlrsrsqqgr*ipnppysl*ryglkdq*cqinrqipt*eslmfsrrcrshr
in*krschqhhsin*flslplkermaky*dfirqnlygsitpcllrillvsntpilg**e
clilsfltlltfcfpsigs*kinl**kntlf*ykqkkkkkkkkfvpwpgppl


Frame C:
thrvfqneqnlkrps*inrlptfqrstriqkrflrnc*tpnqlkel*yqer*aflwsnqn
ryrhqtkikrlclc*sttl**splksvlnswilkp*RKSVQRTRKPSRSSHEKYDAFLAS
ESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIE
LTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY*gycwflihqywvnrs
v*ychf*ly*hfvshlleakkltynkkipffninkkkkkkkkslflgrdxl*


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15119-1 (Contig-U15119-1Q)
/CSM_Contig/Contig-U15119-1Q.Seq.d
(878 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15119-1 (Contig-U15119-1Q) /CSM_Contig/Conti... 1540 0.0
Contig-U13318-1 (Contig-U13318-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U14162-1 (Contig-U14162-1Q) /CSM_Contig/Conti... 34 0.35
Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Conti... 34 0.35
Contig-U11132-1 (Contig-U11132-1Q) /CSM_Contig/Conti... 34 0.35
Contig-U16455-1 (Contig-U16455-1Q) /CSM_Contig/Conti... 32 1.4
Contig-U16231-1 (Contig-U16231-1Q) /CSM_Contig/Conti... 32 1.4
Contig-U15703-1 (Contig-U15703-1Q) /CSM_Contig/Conti... 32 1.4
Contig-U15527-1 (Contig-U15527-1Q) /CSM_Contig/Conti... 32 1.4
Contig-U14807-1 (Contig-U14807-1Q) /CSM_Contig/Conti... 32 1.4

>Contig-U15119-1 (Contig-U15119-1Q) /CSM_Contig/Contig-U15119-1Q.Seq.d
Length = 878

Score = 1540 bits (777), Expect = 0.0
Identities = 777/777 (100%)
Strand = Plus / Plus


Query: 1 aaacacacagggtatttcaaaatgagcaaaatctcaagcgaccaagttagatcaatcgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacacacagggtatttcaaaatgagcaaaatctcaagcgaccaagttagatcaatcgtc 60


Query: 61 tcccaacttttcaaagaagcacaagaatccaaaagaggtttcttagaaactgttgaactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcccaacttttcaaagaagcacaagaatccaaaagaggtttcttagaaactgttgaactc 120


Query: 121 caaatcaacttaaagaattatgataccaagaaagataagcgtttctctggtcaaatcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaatcaacttaaagaattatgataccaagaaagataagcgtttctctggtcaaatcaaa 180


Query: 181 atcggtaccgtcaccaaaccaaaattaagcgtttgtgtctttgctgatcaacaacattgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcggtaccgtcaccaaaccaaaattaagcgtttgtgtctttgctgatcaacaacattgt 240


Query: 241 gatgaagcccactaaaatcggtgctgaattcatggatattgaagccttaaagaaaatcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatgaagcccactaaaatcggtgctgaattcatggatattgaagccttaaagaaaatcgg 300


Query: 301 tccaaagaacaagaaagccatcaagaagctctcatgagaaatacgatgctttcttagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccaaagaacaagaaagccatcaagaagctctcatgagaaatacgatgctttcttagcct 360


Query: 361 ctgaatctatcttacgtcaagttccaaaactcttaggtccaggtctcaacaaggtcggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgaatctatcttacgtcaagttccaaaactcttaggtccaggtctcaacaaggtcggta 420


Query: 421 aattcccaaccctccttactcactctgaagatatggcctcaaagatcaatgatgtcaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aattcccaaccctccttactcactctgaagatatggcctcaaagatcaatgatgtcaaat 480


Query: 481 caaccgtcaaattccaacttaagaaagtcttatgtttagccgtcgctgtcggtcacatcg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caaccgtcaaattccaacttaagaaagtcttatgtttagccgtcgctgtcggtcacatcg 540


Query: 541 aattaactgaaagagaagttgccaccaacatcattcaatcaattaatttcttagtctccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aattaactgaaagagaagttgccaccaacatcattcaatcaattaatttcttagtctccc 600


Query: 601 tcttaaagaaaggatggcaaaatattaagactttatacgtcaaaacctctatgggtccat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcttaaagaaaggatggcaaaatattaagactttatacgtcaaaacctctatgggtccat 660


Query: 661 cacaccgtgtctactaaggatactgttggtttctaatacaccaatactgggttaatagga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cacaccgtgtctactaaggatactgttggtttctaatacaccaatactgggttaatagga 720


Query: 721 gtgtttgatactgtcatttttgactttattgacattttgtttcccatctattggaag 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gtgtttgatactgtcatttttgactttattgacattttgtttcccatctattggaag 777


Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 850 gtttgttccttggccgggaccncctttaa 878
|||||||||||||||||||||||||||||
Sbjct: 850 gtttgttccttggccgggaccncctttaa 878


>Contig-U13318-1 (Contig-U13318-1Q) /CSM_Contig/Contig-U13318-1Q.Seq.d
Length = 692

Score = 36.2 bits (18), Expect = 0.088
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 83 aagaatccaaaagaggtt 100
||||||||||||||||||
Sbjct: 613 aagaatccaaaagaggtt 630


>Contig-U14162-1 (Contig-U14162-1Q) /CSM_Contig/Contig-U14162-1Q.Seq.d
Length = 1182

Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 740 ttgactttattgacatt 756
|||||||||||||||||
Sbjct: 562 ttgactttattgacatt 578


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7322
Number of Sequences: 8402
Number of extensions: 7322
Number of successful extensions: 569
Number of sequences better than 10.0: 46
length of query: 878
length of database: 8,075,542
effective HSP length: 16
effective length of query: 862
effective length of database: 7,941,110
effective search space: 6845236820
effective search space used: 6845236820
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.12
Homology vs DNA
Query= Contig-U15119-1 (Contig-U15119-1Q) /CSM_Contig/Contig-U15119-1Q.Seq.d
(878 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 868 0.0 3
(AU285027) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 868 0.0 3
(AU272458) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 868 0.0 3
(AU271890) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 868 0.0 3
(AU272135) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 862 0.0 3
(AU284923) Dictyostelium discoideum gamete cDNA clone:FC-BQ0... 860 0.0 6
(C23763) Dictyostelium discoideum gamete cDNA, clone FC-AH14. 666 0.0 3
(BJ416026) Dictyostelium discoideum cDNA clone:ddv24j16, 5' ... 561 0.0 3
(BJ434672) Dictyostelium discoideum cDNA clone:ddv24j16, 3' ... 793 0.0 3
(AU264249) Dictyostelium discoideum vegetative cDNA clone:VS... 868 0.0 2
(AU264250) Dictyostelium discoideum vegetative cDNA clone:VS... 854 0.0 2
(AU262533) Dictyostelium discoideum vegetative cDNA clone:VS... 829 0.0 2
(AU275239) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 654 0.0 3
(AU269655) Dictyostelium discoideum vegetative cDNA clone:VS... 525 e-145 1
(AU269656) Dictyostelium discoideum vegetative cDNA clone:VS... 511 e-140 1
(EC761176) PSE00006627 rw_mgpallid Polysphondylium pallidum ... 151 e-112 5
(AU267027) Dictyostelium discoideum vegetative cDNA clone:VS... 297 4e-76 1
(AU269563) Dictyostelium discoideum vegetative cDNA clone:VS... 248 3e-61 1
(AU267026) Dictyostelium discoideum vegetative cDNA clone:VS... 228 3e-55 1
(AU269562) Dictyostelium discoideum vegetative cDNA clone:VS... 218 3e-52 1
(EC744903) PSE00005681 rw_mgpallid Polysphondylium pallidum ... 139 9e-43 2
(EC762460) PSE00006594 rw_mgpallid Polysphondylium pallidum ... 113 1e-20 1
(EC761413) PSE00001376 rw_mgpallid Polysphondylium pallidum ... 105 3e-18 1
(AU271891) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 103 1e-17 1
(EC761187) PSE00008042 rw_mgpallid Polysphondylium pallidum ... 100 2e-16 1
(EE000623) ROE00002741 Rhizopus oryzae Company Rhizopus oryz... 40 7e-16 6
(EE004254) ROE00013827 Rhizopus oryzae Company Rhizopus oryz... 40 1e-15 6
(EE004550) ROE00002624 Rhizopus oryzae Company Rhizopus oryz... 40 2e-15 6
(EE004749) ROE00001977 Rhizopus oryzae Company Rhizopus oryz... 40 2e-15 6
(EE005186) ROE00009741 Rhizopus oryzae Company Rhizopus oryz... 40 2e-15 6
(EE004881) ROE00009645 Rhizopus oryzae Company Rhizopus oryz... 40 2e-15 6
(EE007208) ROE00000202 Rhizopus oryzae Company Rhizopus oryz... 40 2e-15 6
(EE005790) ROE00002600 Rhizopus oryzae Company Rhizopus oryz... 40 2e-15 6
(EE006156) ROE00007280 Rhizopus oryzae Company Rhizopus oryz... 40 2e-15 6
(EE009035) ROE00005231 Rhizopus oryzae Company Rhizopus oryz... 40 4e-15 6
(EE004831) ROE00005858 Rhizopus oryzae Company Rhizopus oryz... 40 3e-13 6
(EC998582) ROE00010547 Rhizopus oryzae Company Rhizopus oryz... 40 2e-12 5
(EC744501) PSE00006609 rw_mgpallid Polysphondylium pallidum ... 86 3e-12 1
(EL910387) INIT2_39_H09.b1_A006 G5 trophont cDNA (INIT2) Ich... 58 3e-12 4
(EL911091) INIT2_43_F11.g1_A006 G5 trophont cDNA (INIT2) Ich... 58 3e-12 4
(EC999584) ROE00011357 Rhizopus oryzae Company Rhizopus oryz... 40 4e-12 5
(EE000963) ROE00013980 Rhizopus oryzae Company Rhizopus oryz... 40 4e-12 5
(EL912165) INIT2_50_H08.b1_A006 G5 trophont cDNA (INIT2) Ich... 58 5e-12 4
(EE000389) ROE00008840 Rhizopus oryzae Company Rhizopus oryz... 40 5e-12 5
(EE000946) ROE00002828 Rhizopus oryzae Company Rhizopus oryz... 40 6e-12 5
(EE004167) ROE00002696 Rhizopus oryzae Company Rhizopus oryz... 40 1e-11 5
(CK150005) CsmgEST00729 Culicoides sonorensis female serum-f... 44 7e-11 4
(CX301152) C08006E01SK PhyRootSr1 Citrus aurantium cDNA clon... 42 2e-10 4
(DY887606) CeleSEQ4081 Cunninghamella elegans pBluescript (E... 48 6e-10 4
(EE008926) ROE00002280 Rhizopus oryzae Company Rhizopus oryz... 36 4e-09 5
(EH013753) USDA-FP_186522 Lysiphlebus testaceipes adult whol... 50 4e-09 3
(AY961562) Lysiphlebus testaceipes ribosomal protein L10a is... 50 6e-09 3
(EH016701) USDA-FP_189176 Lysiphlebus testaceipes adult whol... 50 7e-09 3
(EH012059) USDA-FP_184997 Lysiphlebus testaceipes adult whol... 50 7e-09 3
(EH015060) USDA-FP_187698 Lysiphlebus testaceipes adult whol... 50 8e-09 3
(EH012823) USDA-FP_185685 Lysiphlebus testaceipes adult whol... 50 8e-09 3
(DY890920) CeleSEQ7405 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY886956) CeleSEQ2797 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY887093) CeleSEQ2982 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY890625) CeleSEQ9794 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY891104) CeleSEQ7647 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY894283) CeleSEQ13820 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY887900) CeleSEQ4717 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY890603) CeleSEQ9663 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY888958) CeleSEQ6404 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY888918) CeleSEQ6334 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY895051) CeleSEQ14776 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY891455) CeleSEQ10153 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY888364) CeleSEQ5265 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY886449) CeleSEQ2110 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY893176) CeleSEQ12446 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY894979) CeleSEQ14684 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY893709) CeleSEQ13124 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY889558) CeleSEQ11459 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY888175) CeleSEQ3659 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY889474) CeleSEQ11341 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY892227) CeleSEQ9719 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY886217) CeleSEQ1780 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY894396) CeleSEQ13958 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY886198) CeleSEQ1756 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY894494) CeleSEQ14076 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY895644) CeleSEQ15521 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY888238) CeleSEQ5028 Cunninghamella elegans pBluescript (E... 48 1e-08 2
(DY885085) CeleSEQ272 Cunninghamella elegans pBluescript (Ec... 48 1e-08 2
(DY894166) CeleSEQ13677 Cunninghamella elegans pBluescript (... 48 1e-08 2
(DY893048) CeleSEQ12214 Cunninghamella elegans pBluescript (... 48 1e-08 2
(EC762465) PSE00004976 rw_mgpallid Polysphondylium pallidum ... 72 4e-08 1
(AL436699) T7 end of clone BC0AA004G07 of library BC0AA from... 52 5e-08 3
(EL913133) INIT2_56_G09.g2_A006 G5 trophont cDNA (INIT2) Ich... 58 8e-08 3
(EC999483) ROE00008744 Rhizopus oryzae Company Rhizopus oryz... 40 1e-07 4
(EE006682) ROE00003515 Rhizopus oryzae Company Rhizopus oryz... 36 1e-07 5
(EC999856) ROE00011261 Rhizopus oryzae Company Rhizopus oryz... 40 1e-07 4
(EL909016) INIT2_28_E09.g1_A006 G5 trophont cDNA (INIT2) Ich... 58 1e-07 3
(EC999970) ROE00010452 Rhizopus oryzae Company Rhizopus oryz... 40 1e-07 4
(EL912248) INIT2_50_H08.g1_A006 G5 trophont cDNA (INIT2) Ich... 58 1e-07 3
(EE001554) ROE00009549 Rhizopus oryzae Company Rhizopus oryz... 40 1e-07 4
(EE001390) ROE00009453 Rhizopus oryzae Company Rhizopus oryz... 40 1e-07 4
(EA486976) Sequence 1423 from patent US 7348410. 44 2e-07 3
(DD175519) FLEA HEAD, NERVE CORD, HINDGUT AND MALPIGHIAN TUB... 44 2e-07 3
(CS432502) Sequence 1423 from Patent EP1710252. 44 2e-07 3

>(AC117075) Dictyostelium discoideum chromosome 2 map 5201047-5455781
strain AX4, complete sequence.
Length = 254733

Score = 868 bits (438), Expect(3) = 0.0
Identities = 441/442 (99%)
Strand = Plus / Plus


Query: 337 agaaatacgatgctttcttagcctctgaatctatcttacgtcaagttccaaaactcttag 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241690 agaaatacgatgctttcttagcctctgaatctatcttacgtcaagttccaaaactcttag 241749


Query: 397 gtccaggtctcaacaaggtcggtaaattcccaaccctccttactcactctgaagatatgg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241750 gtccaggtctcaacaaggtcggtaaattcccaaccctccttactcactctgaagatatgg 241809


Query: 457 cctcaaagatcaatgatgtcaaatcaaccgtcaaattccaacttaagaaagtcttatgtt 516
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 241810 cctcaaagatcaatgatgtcaaatcaaccgtcaaattccaacttaagaaagttttatgtt 241869


Query: 517 tagccgtcgctgtcggtcacatcgaattaactgaaagagaagttgccaccaacatcattc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241870 tagccgtcgctgtcggtcacatcgaattaactgaaagagaagttgccaccaacatcattc 241929


Query: 577 aatcaattaatttcttagtctccctcttaaagaaaggatggcaaaatattaagactttat 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241930 aatcaattaatttcttagtctccctcttaaagaaaggatggcaaaatattaagactttat 241989


Query: 637 acgtcaaaacctctatgggtccatcacaccgtgtctactaaggatactgttggtttctaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241990 acgtcaaaacctctatgggtccatcacaccgtgtctactaaggatactgttggtttctaa 242049


Query: 697 tacaccaatactgggttaataggagtgtttgatactgtcatttttgactttattgacatt 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242050 tacaccaatactgggttaataggagtgtttgatactgtcatttttgactttattgacatt 242109


Query: 757 ttgtttcccatctattggaagc 778
||||||||||||||||||||||
Sbjct: 242110 ttgtttcccatctattggaagc 242131

Score = 446 bits (225), Expect(3) = 0.0
Identities = 225/225 (100%)
Strand = Plus / Plus


Query: 25 agcaaaatctcaagcgaccaagttagatcaatcgtctcccaacttttcaaagaagcacaa 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241380 agcaaaatctcaagcgaccaagttagatcaatcgtctcccaacttttcaaagaagcacaa 241439


Query: 85 gaatccaaaagaggtttcttagaaactgttgaactccaaatcaacttaaagaattatgat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241440 gaatccaaaagaggtttcttagaaactgttgaactccaaatcaacttaaagaattatgat 241499


Query: 145 accaagaaagataagcgtttctctggtcaaatcaaaatcggtaccgtcaccaaaccaaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241500 accaagaaagataagcgtttctctggtcaaatcaaaatcggtaccgtcaccaaaccaaaa 241559


Query: 205 ttaagcgtttgtgtctttgctgatcaacaacattgtgatgaagcc 249
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241560 ttaagcgtttgtgtctttgctgatcaacaacattgtgatgaagcc 241604

Score = 170 bits (86), Expect(3) = 0.0
Identities = 86/86 (100%)
Strand = Plus / Plus


Query: 249 ccactaaaatcggtgctgaattcatggatattgaagccttaaagaaaatcggtccaaaga 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241603 ccactaaaatcggtgctgaattcatggatattgaagccttaaagaaaatcggtccaaaga 241662


Query: 309 acaagaaagccatcaagaagctctca 334
||||||||||||||||||||||||||
Sbjct: 241663 acaagaaagccatcaagaagctctca 241688

Score = 52.0 bits (26), Expect = 0.036
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1 aaacacacagggtatttcaaaatgag 26
||||||||||||||||||||||||||
Sbjct: 241102 aaacacacagggtatttcaaaatgag 241127

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 857,556,445
Number of extensions: 46666118
Number of successful extensions: 3429001
Number of sequences better than 10.0: 1938
Length of query: 878
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 854
Effective length of database: 97,308,875,965
Effective search space: 83101780074110
Effective search space used: 83101780074110
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15119-1 (Contig-U15119-1Q) /CSM_Contig/Contig-U15119-1Q.Seq.d
(878 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q86L05) RecName: Full=60S ribosomal protein L10a; &AC117075_90... 224 3e-97
BC158335_1(BC158335|pid:none) Xenopus tropicalis hypothetical pr... 172 4e-63
BC168113_1(BC168113|pid:none) Xenopus tropicalis cDNA clone IMAG... 172 8e-63
(Q7ZYS8) RecName: Full=60S ribosomal protein L10a; &BC041308_1(... 172 2e-62
(Q6PC69) RecName: Full=60S ribosomal protein L10a; &AL929282_11... 168 4e-62
AM049020_1(AM049020|pid:none) Biphyllus lunatus mRNA for ribosom... 166 1e-61
CP000584_290(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 175 2e-61
AY890829_1(AY890829|pid:none) Synthetic construct Homo sapiens c... 169 3e-61
(Q9VTP4) RecName: Full=60S ribosomal protein L10a-2; &AE014296_... 165 3e-61
U12404_1(U12404|pid:none) Human Csa-19 mRNA, complete cds. 168 3e-61
(Q90YV8) RecName: Full=60S ribosomal protein L10a; &AF401564_1(... 167 4e-61
AY232031_1(AY232031|pid:none) Drosophila yakuba clone yak-ad_CG7... 165 4e-61
(Q963B6) RecName: Full=60S ribosomal protein L10a; &AF391092_1(... 164 8e-61
AK153863_1(AK153863|pid:none) Mus musculus 2 days neonate thymus... 169 2e-60
AM049021_1(AM049021|pid:none) Cicindela littoralis mRNA for ribo... 163 2e-60
EF633842_1(EF633842|pid:none) Ornithodoros parkeri clone OP-117 ... 166 2e-60
BT043860_1(BT043860|pid:none) Salmo salar clone HM5_0304 ribosom... 167 5e-60
AM049023_1(AM049023|pid:none) Georissus sp. APV-2005 mRNA for ri... 163 6e-60
BT073448_1(BT073448|pid:none) Oncorhynchus mykiss clone omyk-evn... 166 8e-60
BT073371_1(BT073371|pid:none) Oncorhynchus mykiss clone omyk-evn... 166 1e-59
EU325870_1(EU325870|pid:none) Oncorhynchus masou formosanus ribo... 166 1e-59
AY857423_1(AY857423|pid:none) Suberites domuncula L10a mRNA, com... 164 1e-59
EU961318_1(EU961318|pid:none) Zea mays clone 234483 60S ribosoma... 162 2e-59
EU302536_1(EU302536|pid:none) Lineus viridis ribosomal protein r... 164 7e-59
EU952640_1(EU952640|pid:none) Zea mays clone 1285156 60S ribosom... 162 7e-59
EU558360_1(EU558360|pid:none) Phoronis muelleri putative 60S rib... 162 1e-58
AY846821_1(AY846821|pid:none) Triticum aestivum ribosomal protei... 158 1e-58
AK062103_1(AK062103|pid:none) Oryza sativa Japonica Group cDNA c... 159 2e-58
AM049024_1(AM049024|pid:none) Scarabaeus laticollis mRNA for rib... 159 3e-58
EF634505_1(EF634505|pid:none) Pristionchus sp. 10 RS5133 large s... 156 6e-58
AY389924_1(AY389924|pid:none) Protopterus dolloi ribosomal prote... 160 6e-58
FB902427_1(FB902427|pid:none) Sequence 121700 from Patent WO2008... 161 7e-58
EF634511_1(EF634511|pid:none) Koerneria sp. RS1982 large subunit... 164 7e-58
AK061522_1(AK061522|pid:none) Oryza sativa Japonica Group cDNA c... 162 1e-57
(Q8VZB9) RecName: Full=60S ribosomal protein L10a-1; &AY065077_... 162 1e-57
BT038516_1(BT038516|pid:none) Zea mays full-length cDNA clone ZM... 157 1e-57
FB902407_1(FB902407|pid:none) Sequence 121680 from Patent WO2008... 159 1e-57
BT066491_1(BT066491|pid:none) Zea mays full-length cDNA clone ZM... 157 1e-57
FB902415_1(FB902415|pid:none) Sequence 121688 from Patent WO2008... 160 2e-57
AK122095_1(AK122095|pid:none) Oryza sativa Japonica Group cDNA c... 160 2e-57
FB902431_1(FB902431|pid:none) Sequence 121704 from Patent WO2008... 159 2e-57
EF634493_1(EF634493|pid:none) Pristionchus pacificus large subun... 154 2e-57
(P59231) RecName: Full=60S ribosomal protein L10a-3; &AB007651_... 161 3e-57
EF411210_1(EF411210|pid:none) Chlorella vulgaris strain NJ-7 60S... 161 3e-57
FB902413_1(FB902413|pid:none) Sequence 121686 from Patent WO2008... 158 3e-57
EF634502_1(EF634502|pid:none) Pristionchus marianneae large subu... 154 3e-57
BT087326_1(BT087326|pid:none) Zea mays full-length cDNA clone ZM... 157 5e-57
FB902433_1(FB902433|pid:none) Sequence 121706 from Patent WO2008... 157 5e-57
EF082939_1(EF082939|pid:none) Picea sitchensis clone WS02721_O03... 155 5e-57
EF634507_1(EF634507|pid:none) Pristionchus americanus large subu... 155 5e-57
EF634497_1(EF634497|pid:none) Pristionchus uniformis large subun... 153 5e-57
FB902447_1(FB902447|pid:none) Sequence 121720 from Patent WO2008... 159 6e-57
(Q9N4I4) RecName: Full=60S ribosomal protein L10a; &AC024200_4(... 158 6e-57
EF634506_1(EF634506|pid:none) Pristionchus sp. 11 RS5228 large s... 153 6e-57
EF634495_1(EF634495|pid:none) Pristionchus lheritieri large subu... 153 6e-57
BT035095_1(BT035095|pid:none) Zea mays full-length cDNA clone ZM... 161 8e-57
A84674(A84674)60S ribosomal protein L10A [imported] - Arabidopsi... 158 1e-56
FB902459_1(FB902459|pid:none) Sequence 121732 from Patent WO2008... 156 1e-56
EF634494_1(EF634494|pid:none) Pristionchus maupasi large subunit... 154 1e-56
EF634508_1(EF634508|pid:none) Pristionchus sp. 13 RS5231 large s... 152 1e-56
AY847949_1(AY847949|pid:none) Pectinaria gouldii ribosomal prote... 164 1e-56
EU961241_1(EU961241|pid:none) Zea mays clone 233747 60S ribosoma... 160 1e-56
EF082969_1(EF082969|pid:none) Picea sitchensis clone WS0271_A16 ... 155 1e-56
EF634496_1(EF634496|pid:none) Pristionchus entomophagus large su... 152 1e-56
AM920428_1100(AM920428|pid:none) Penicillium chrysogenum Wiscons... 167 2e-56
AM270166_12(AM270166|pid:none) Aspergillus niger contig An08c011... 160 2e-56
FB902463_1(FB902463|pid:none) Sequence 121736 from Patent WO2008... 155 2e-56
EF634510_1(EF634510|pid:none) Pristionchus sp. 15 RS5229 large s... 150 2e-56
AY389923_1(AY389923|pid:none) Latimeria chalumnae ribosomal prot... 161 2e-56
AY190729_1(AY190729|pid:none) Pagrus major ribosomal protein L10... 167 2e-56
CR382131_1316(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 162 2e-56
BX649605_46(BX649605|pid:none) Aspergillus fumigatus BAC pilot p... 159 2e-56
FB902445_1(FB902445|pid:none) Sequence 121718 from Patent WO2008... 159 2e-56
EF634504_1(EF634504|pid:none) Pristionchus pseudaerivorus large ... 152 2e-56
FB902425_1(FB902425|pid:none) Sequence 121698 from Patent WO2008... 162 3e-56
BT078350_1(BT078350|pid:none) Lepeophtheirus salmonis Pacific fo... 166 7e-56
FB902405_1(FB902405|pid:none) Sequence 121678 from Patent WO2008... 153 7e-56
EF144191_1(EF144191|pid:none) Populus trichocarpa clone PX0011_B... 158 2e-55
BT078506_1(BT078506|pid:none) Lepeophtheirus salmonis Pacific fo... 165 3e-55
EF634503_1(EF634503|pid:none) Pristionchus pauli large subunit r... 148 3e-55
CR382122_80(CR382122|pid:none) Kluyveromyces lactis strain NRRL ... 156 6e-55
EF146293_1(EF146293|pid:none) Populus trichocarpa clone WS0116_O... 157 6e-55
FB902449_1(FB902449|pid:none) Sequence 121722 from Patent WO2008... 155 7e-55
CU633900_466(CU633900|pid:none) Podospora anserina genomic DNA c... 154 2e-54
AM910994_650(AM910994|pid:none) Plasmodium knowlesi strain H chr... 155 4e-54
BT075946_1(BT075946|pid:none) Caligus rogercresseyi clone crog-e... 157 4e-54
FN392319_487(FN392319|pid:none) Pichia pastoris GS115 chromosome... 154 2e-53
(Q6FRF5) RecName: Full=60S ribosomal protein L10a; &CR380954_38... 152 2e-53
BT080277_1(BT080277|pid:none) Caligus clemensi clone ccle-evs-50... 155 2e-53
CU928181_286(CU928181|pid:none) Zygosaccharomyces rouxii strain ... 153 4e-53
AY669070_1(AY669070|pid:none) Chaetomium globosum 60S ribosomal ... 152 4e-53
CR382135_174(CR382135|pid:none) Debaryomyces hansenii strain CBS... 151 7e-53
FM992693_199(FM992693|pid:none) Candida dubliniensis CD36 chromo... 152 9e-53
FN357393_33(FN357393|pid:none) Schistosoma mansoni genome sequen... 147 3e-52
EU139207_1(EU139207|pid:none) Flustra foliacea putative 60S ribo... 147 4e-52
AY231773_1(AY231773|pid:none) Drosophila yakuba clone yak-em_CG7... 135 4e-52
AY813759_1(AY813759|pid:none) Schistosoma japonicum clone SJCHGC... 142 2e-51
AY389961_1(AY389961|pid:none) Gallus gallus ribosomal protein L1... 138 7e-50
AY389969_1(AY389969|pid:none) Xenopus laevis ribosomal protein L... 139 9e-50
EU558313_1(EU558313|pid:none) Novocrania anomala putative 60S ri... 126 1e-49
FB902435_1(FB902435|pid:none) Sequence 121708 from Patent WO2008... 142 2e-48
(P53028) RecName: Full=60S ribosomal protein L10a; &U34620_1(U3... 148 3e-48
AJ270980_1(AJ270980|pid:none) Caenorhabditis elegans partial mRN... 158 8e-48
AM494972_400(AM494972|pid:none) Leishmania braziliensis chromoso... 144 1e-47
AM494955_69(AM494955|pid:none) Leishmania braziliensis chromosom... 144 1e-47
(Q9SW75) RecName: Full=60S ribosomal protein L10a; &AF175385_1(... 137 2e-47
AM502236_63(AM502236|pid:none) Leishmania infantum chromosome 18... 144 4e-47
DQ675547_1(DQ675547|pid:none) Diaphorina citri clone WHDc0492 pu... 156 2e-45
BT049372_1(BT049372|pid:none) Salmo salar clone ssal-rgb2-646-24... 167 5e-45
EF576085_1(EF576085|pid:none) Oryza sativa (indica cultivar-grou... 150 6e-45
DQ629164_1(DQ629164|pid:none) Sus scrofa RPL10a (RPL10A) mRNA, c... 169 3e-44
AY389626_1(AY389626|pid:none) Hyacinthus orientalis 60S ribosoma... 151 2e-42
BT001825_1(BT001825|pid:none) Drosophila melanogaster RH43519 fu... 165 4e-42
AE014297_1995(AE014297|pid:none) Drosophila melanogaster chromos... 125 3e-41
AY620995_1(AY620995|pid:none) Branchiostoma belcheri tsingtaunes... 102 5e-40
BT001758_1(BT001758|pid:none) Drosophila melanogaster RH06366 fu... 166 1e-39
(P53027) RecName: Full=60S ribosomal protein L10a; Flags: Fragme... 101 2e-39
AC006932_6(AC006932|pid:none) Genomic sequence for Arabidopsis t... 97 3e-38
AP005524_6(AP005524|pid:none) Oryza sativa Japonica Group genomi... 160 5e-38
AK071249_1(AK071249|pid:none) Oryza sativa Japonica Group cDNA c... 160 5e-38
DQ095870_1(DQ095870|pid:none) Aspergillus fumigatus ribosomal pr... 159 1e-37
EU973801_1(EU973801|pid:none) Zea mays clone 416807 unknown mRNA. 157 4e-37
CR940353_103(CR940353|pid:none) Theileria annulata strain Ankara... 147 5e-37
EU116853_1(EU116853|pid:none) Sipunculus nudus putative ribosoma... 124 9e-36
EU124961_1(EU124961|pid:none) Arenicola marina ribosomal protein... 152 1e-35
AY223376_1(AY223376|pid:none) Schistosoma japonicum clone ZZZ245... 141 2e-35
AX884867_1(AX884867|pid:none) Sequence 730 from Patent EP1033401. 150 5e-35
AF070993_1(AF070993|pid:none) Trichomonas vaginalis ribosomal pr... 93 1e-31
BT051527_1(BT051527|pid:none) Medicago truncatula clone MTYF1_F2... 86 1e-29
AY813359_1(AY813359|pid:none) Schistosoma japonicum SJCHGC01224 ... 107 3e-25
FB902423_1(FB902423|pid:none) Sequence 121696 from Patent WO2008... 117 4e-25
AP008214_1747(AP008214|pid:none) Oryza sativa (japonica cultivar... 87 6e-25
AY909400_1(AY909400|pid:none) Siniperca chuatsi clone C401 ribos... 115 2e-24
AX969653_1(AX969653|pid:none) Sequence 456 from Patent EP1104808. 88 5e-24
(O15613) RecName: Full=60S ribosomal protein L10a; Flags: Fragme... 75 2e-23
DQ160125_1(DQ160125|pid:none) Taraxacum officinale TO97-3 (To97-... 111 3e-23
DQ424827_1(DQ424827|pid:none) Cathaya argyrophylla isolate 2009_... 89 2e-20
(Q9NBJ7) RecName: Full=60S ribosomal protein L10a; Flags: Fragme... 86 2e-20
DQ424826_1(DQ424826|pid:none) Cathaya argyrophylla isolate 2009_... 89 4e-20
AY915484_1(AY915484|pid:none) Schistosoma japonicum SJCHGC07046 ... 97 5e-19
DQ232979_1(DQ232979|pid:none) Pinus densata isolate PtIFG200901 ... 89 1e-18
DQ232916_1(DQ232916|pid:none) Pinus armandii isolate PtIFG200902... 89 1e-18
DQ232915_1(DQ232915|pid:none) Pinus armandii isolate PtIFG200901... 88 2e-18
AY909401_1(AY909401|pid:none) Siniperca chuatsi clone C330 ribos... 90 9e-17
AF293406_1(AF293406|pid:none) Phaseolus coccineus 60S ribosomal ... 88 3e-16
AF419170_1(AF419170|pid:none) Gillichthys mirabilis ribosomal pr... 84 6e-15
(Q5JH35) RecName: Full=50S ribosomal protein L1P; &AP006878_141... 63 3e-12
CP001398_488(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 63 4e-12
AY714853_7(AY714853|pid:none) Uncultured archaeon GZfos31B6 clon... 74 6e-12
(Q18G90) RecName: Full=50S ribosomal protein L1P; &AM180088_197... 65 1e-11
(A2STT9) RecName: Full=50S ribosomal protein L1P; &CP000559_156... 71 5e-11
(B0R4W2) RecName: Full=50S ribosomal protein L1P; &(P13575) Rec... 62 6e-11
(Q8TX51) RecName: Full=50S ribosomal protein L1P; &AE009439_825... 62 8e-11
X15078_4(X15078|pid:none) Halobium cutirubrum L11, L1, L10 and L... 61 8e-11
(Q12UP9) RecName: Full=50S ribosomal protein L1P; &CP000300_180... 70 9e-11
(Q6L1X9) RecName: Full=50S ribosomal protein L1P; &AE017261_438... 58 2e-10
(Q8TZJ9) RecName: Full=50S ribosomal protein L1P; &AE009950_199... 69 3e-10
CP001338_160(CP001338|pid:none) Candidatus Methanosphaerula palu... 68 5e-10
(Q2NEW1) RecName: Full=50S ribosomal protein L1P; &CP000102_122... 67 6e-10
(Q9HL71) RecName: Full=50S ribosomal protein L1P; &AL445064_36(... 64 7e-09
(Q2FQ32) RecName: Full=50S ribosomal protein L1P; &CP000254_631... 64 7e-09
AM980975_1(AM980975|pid:none) Echinorhynchus truttae partial mRN... 58 7e-09
EF677770_1(EF677770|pid:none) Picea sitchensis clone WS02774_M12... 62 3e-08
CR954205_406(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 61 6e-08
AE000666_1643(AE000666|pid:none) Methanothermobacter thermautotr... 60 7e-08
BT056459_1(BT056459|pid:none) Salmo salar clone ssal-rgb-502-206... 60 1e-07
CR937008_19(CR937008|pid:none) uncultured archaeon clone fos0128... 59 2e-07
EU016645_4(EU016645|pid:none) Uncultured Group I marine crenarch... 59 2e-07
CP000077_1349(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 59 2e-07
(O52704) RecName: Full=50S ribosomal protein L1P; &AF044919_1(A... 59 2e-07
(Q8PY52) RecName: Full=50S ribosomal protein L1P; &AE008384_101... 59 3e-07
(A3CSJ6) RecName: Full=50S ribosomal protein L1P; &CP000562_411... 58 4e-07
CP000866_378(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 58 5e-07
CR954205_510(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 57 1e-06
CP001576_409(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 55 4e-06
(A6UTF9) RecName: Full=50S ribosomal protein L1P; &CP000743_188... 55 4e-06
AY574350_1(AY574350|pid:none) Antonospora locustae 60S ribosomal... 54 5e-06
AL049999_1(AL049999|pid:none) Homo sapiens mRNA; cDNA DKFZp564M1... 53 1e-05
DQ399457_1(DQ399457|pid:none) Ictalurus punctatus clone SND02A c... 53 2e-05
(A3DNI1) RecName: Full=50S ribosomal protein L1P; &CP000575_107... 52 3e-05
(A4YH88) RecName: Full=50S ribosomal protein L1P; &CP000682_161... 51 4e-05
CR858325_1(CR858325|pid:none) Pongo abelii mRNA; cDNA DKFZp468I2... 51 4e-05
(A6VIQ0) RecName: Full=50S ribosomal protein L1P; &CP000745_125... 51 4e-05
BC019069_1(BC019069|pid:none) Homo sapiens ribosomal L1 domain c... 51 4e-05
(P96038) RecName: Full=50S ribosomal protein L1P; &AE006641_308... 51 4e-05
AY154473_1(AY154473|pid:none) Homo sapiens cellular senescence i... 51 4e-05
BC017899_1(BC017899|pid:none) Homo sapiens ribosomal L1 domain c... 51 4e-05
(O76021) RecName: Full=Ribosomal L1 domain-containing protein 1;... 51 4e-05
(A4FZS7) RecName: Full=50S ribosomal protein L1P; &CP000609_139... 51 6e-05
(O28782) RecName: Full=50S ribosomal protein L1P; &A69436(A6943... 51 6e-05
CP001401_1722(CP001401|pid:none) Sulfolobus islandicus M.16.27, ... 50 1e-04
AM469646_1(AM469646|pid:none) Vitis vinifera contig VV78X004607.... 50 1e-04
CP001399_1743(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 50 1e-04
BC157448_1(BC157448|pid:none) Xenopus laevis hypothetical protei... 49 2e-04
(Q74M51) RecName: Full=50S ribosomal protein L1P; &AE017199_532... 49 3e-04
AY078921_1(AY078921|pid:none) Arabidopsis thaliana At2g42650/F14... 47 8e-04
AC007087_7(AC007087|pid:none) Arabidopsis thaliana chromosome 2 ... 47 8e-04
AL353032_1(AL353032|pid:none) Arabidopsis thaliana DNA chromosom... 47 8e-04
AY102561_1(AY102561|pid:none) Arabidopsis thaliana hypothetical ... 47 8e-04
BC099279_1(BC099279|pid:none) Xenopus laevis hypothetical protei... 47 0.001
(B1YAC8) RecName: Full=50S ribosomal protein L1P; &CP001014_161... 47 0.001
BC106650_1(BC106650|pid:none) Xenopus laevis hypothetical protei... 47 0.001
(Q6M0L0) RecName: Full=50S ribosomal protein L1P; &BX950229_260... 47 0.001
(A3MX83) RecName: Full=50S ribosomal protein L1P; &CP000561_181... 45 0.002
CP000816_1174(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, c... 45 0.004
AC068143_8(AC068143|pid:none) Sequence of BAC T2D23 from Arabido... 44 0.005
BC069934_1(BC069934|pid:none) Mus musculus cDNA clone MGC:78228 ... 43 0.012
A23060(A23060) spliced leader (SL) - Trypanosoma brucei (fragmen... 43 0.012
AK012937_1(AK012937|pid:none) Mus musculus 10, 11 days embryo wh... 43 0.012
AK075933_1(AK075933|pid:none) Mus musculus ES cells cDNA, RIKEN ... 43 0.012
AK168469_1(AK168469|pid:none) Mus musculus 17 days embryo stomac... 43 0.012
BC034355_1(BC034355|pid:none) Mus musculus RIKEN cDNA 2410005K20... 43 0.012
AK166479_1(AK166479|pid:none) Mus musculus mammary gland RCB-052... 43 0.012
AK162241_1(AK162241|pid:none) Mus musculus in vitro fertilized e... 43 0.012
AK165572_1(AK165572|pid:none) Mus musculus brain CRL-1443 BC3H1 ... 43 0.012
CR925678_168(CR925678|pid:none) Ehrlichia ruminantium str. Welge... 42 0.027
(B5YEX9) RecName: Full=50S ribosomal protein L1; &CP001146_1200... 37 0.077
(Q3YST8) RecName: Full=50S ribosomal protein L1; &CP000107_166(... 40 0.10
CP000770_53(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, ... 40 0.13
AL442115_11(AL442115|pid:none) Oryza sativa genomic DNA, chromos... 40 0.13
AL606594_15(AL606594|pid:none) Oryza sativa genomic DNA, chromos... 40 0.13
(P38779) RecName: Full=Proteasome-interacting protein CIC1; AltN... 39 0.30
BC107631_1(BC107631|pid:none) Danio rerio similar to ribosomal L... 38 0.39
(Q30X09) RecName: Full=50S ribosomal protein L1; &CP000112_2986... 38 0.51
BC121740_1(BC121740|pid:none) Danio rerio similar to ribosomal L... 38 0.51
AY069795_1(AY069795|pid:none) Drosophila melanogaster SD03546 fu... 38 0.51
(Q9VLK2) RecName: Full=Ribosomal L1 domain-containing protein CG... 38 0.51
AM920427_617(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 37 0.67
BC129256_1(BC129256|pid:none) Danio rerio similar to ribosomal L... 37 0.67
(B7J1W4) RecName: Full=50S ribosomal protein L1; &CP001205_375(... 37 0.87
(O51353) RecName: Full=50S ribosomal protein L1; &AE000783_391(... 37 0.87
DQ518127_1(DQ518127|pid:none) Troglosiro longifossa voucher MCZD... 37 1.1
CP000499_63(CP000499|pid:none) Pichia stipitis CBS 6054 chromoso... 36 1.5
EU887061_1(EU887061|pid:none) Troglosiro wilsoni voucher MCZ DNA... 35 3.3
DQ513113_1(DQ513113|pid:none) Siro acaroides voucher MCZ DNA1016... 35 3.3
DQ518128_1(DQ518128|pid:none) Troglosiro ninqua voucher MCZDNA10... 35 3.3
DQ992265_1(DQ992265|pid:none) Rakaia denticulata isolate DNA1018... 35 3.3
EU887041_1(EU887041|pid:none) Troglosiro oscitatio voucher MCZ D... 35 3.3
DQ825643_1(DQ825643|pid:none) Siro acaroides voucher MCZDNA10048... 35 3.3
AY639578_1(AY639578|pid:none) Siro acaroides voucher MCZ DNA1004... 35 3.3
EU887040_1(EU887040|pid:none) Troglosiro urbanus voucher MCZ DNA... 35 3.3
DQ992269_1(DQ992269|pid:none) Rakaia denticulata isolate DNA1018... 35 4.3
DQ992308_1(DQ992308|pid:none) Rakaia denticulata isolate DNA1009... 35 4.3
CP000771_1131(CP000771|pid:none) Fervidobacterium nodosum Rt17-B... 35 4.3
DQ992270_1(DQ992270|pid:none) Rakaia denticulata isolate DNA1018... 35 4.3
(P27150) RecName: Full=50S ribosomal protein L1; &(Q72GV9) RecN... 35 4.3
DQ276607_1(DQ276607|pid:none) Xylophanes chiron voucher 01-SRNP-... 35 4.3
DQ992307_1(DQ992307|pid:none) Rakaia denticulata isolate DNA1009... 35 4.3
DQ992268_1(DQ992268|pid:none) Rakaia denticulata isolate DNA1018... 35 4.3
(Q5SLP7) RecName: Full=50S ribosomal protein L1; &AP008226_246(... 35 4.3
DQ992241_1(DQ992241|pid:none) Rakaia denticulata isolate DNA1009... 35 4.3
DQ992236_1(DQ992236|pid:none) Rakaia denticulata isolate DNA1009... 35 4.3
EU887051_1(EU887051|pid:none) Troglosiro juberthiei voucher MCZ ... 34 5.7
EU887053_1(EU887053|pid:none) Troglosiro cf. juberthiei PS-2008 ... 34 5.7
EU887039_1(EU887039|pid:none) Troglosiro brevifossa voucher MCZ ... 34 5.7
EU887063_1(EU887063|pid:none) Troglosiro cf. juberthiei PS-2008 ... 34 5.7
CP000499_505(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 34 5.7
EU887055_1(EU887055|pid:none) Troglosiro cf. juberthiei PS-2008 ... 34 5.7
EU887047_1(EU887047|pid:none) Troglosiro juberthiei voucher MCZ ... 34 5.7
DQ205105_1(DQ205105|pid:none) Limenitis populi voucher SPM031 cy... 34 5.7
AY639584_1(AY639584|pid:none) Troglosiro aelleni voucher MCZ DNA... 34 5.7
EU887058_1(EU887058|pid:none) Troglosiro cf. juberthiei PS-2008 ... 34 5.7
EU887048_1(EU887048|pid:none) Troglosiro juberthiei voucher MCZ ... 34 5.7
EF032240_1(EF032240|pid:none) Megalyra sp. JC179 cytochrome oxid... 34 5.7
EF473790_1(EF473790|pid:none) Parnassius inopinatus voucher AC14... 34 7.4
AM231444_1(AM231444|pid:none) Parnassius huberi mitochondrial pa... 34 7.4
AM231456_1(AM231456|pid:none) Parnassius augustus augustus mitoc... 34 7.4
EU092976_1(EU092976|pid:none) Parnassius mnemosyne isolate At602... 34 7.4
EF473789_1(EF473789|pid:none) Parnassius charltonius vaporosus v... 34 7.4
EF485045_1(EF485045|pid:none) Parnassius glacialis voucher AC20-... 34 7.4
AM231470_1(AM231470|pid:none) Parnassius staudingeri chitralica ... 34 7.4
(A0M3Z2) RecName: Full=50S ribosomal protein L1; &CU207366_2346... 34 7.4
AM231442_1(AM231442|pid:none) Parnassius acco tagalangi mitochon... 34 7.4
AM231465_1(AM231465|pid:none) Parnassius delphius mitochondrial ... 34 7.4
AM231463_1(AM231463|pid:none) Parnassius patricius uzyngyrus mit... 34 7.4
EF473807_1(EF473807|pid:none) Parnassius hide voucher AC13-10 cy... 34 7.4
EF473826_1(EF473826|pid:none) Parnassius arcticus voucher AC23-4... 34 7.4
EF473801_1(EF473801|pid:none) Parnassius stubbendorfii hoenei vo... 34 7.4
AM231421_1(AM231421|pid:none) Parnassius mnemosyne ochracea mito... 34 7.4
EF473800_1(EF473800|pid:none) Parnassius stubbendorfii koreanus ... 34 7.4
DQ407762_1(DQ407762|pid:none) Parnassius delphius voucher UP 100... 34 7.4
EU092969_1(EU092969|pid:none) Parnassius mnemosyne isolate Bu775... 34 7.4
AM231417_1(AM231417|pid:none) Parnassius mnemosyne parmenides mi... 34 7.4
DQ407773_1(DQ407773|pid:none) Parnassius staudingeri voucher UP ... 34 7.4
EU836670_1(EU836670|pid:none) Parnassius mnemosyne haplotype 1.0... 34 7.4
AM231435_1(AM231435|pid:none) Parnassius tenedius mitochondrial ... 34 7.4
EU092967_1(EU092967|pid:none) Parnassius mnemosyne isolate U428 ... 34 7.4
EU093020_1(EU093020|pid:none) Parnassius glacialis isolate 1 cyt... 34 7.4
EF473793_1(EF473793|pid:none) Parnassius imperator musageta vouc... 34 7.4
AJ012664_1(AJ012664|pid:none) Heliothis virescens mRNA for cycli... 34 7.4
EU836669_1(EU836669|pid:none) Parnassius mnemosyne haplotype 1.0... 34 7.4
AM231454_1(AM231454|pid:none) Parnassius autocrator mitochondria... 34 7.4
EF473796_1(EF473796|pid:none) Parnassius eversmanni eversmanni v... 34 7.4
AM231434_1(AM231434|pid:none) Parnassius tenedius arcticus mitoc... 34 7.4
AM231459_1(AM231459|pid:none) Parnassius stoliczkanus stoliczkan... 34 7.4
AM231419_1(AM231419|pid:none) Parnassius mnemosyne pseudonubilos... 34 7.4
EF473820_1(EF473820|pid:none) Parnassius cephalus voucher AC10-6... 34 7.4
EF473819_1(EF473819|pid:none) Parnassius hannyngtoni voucher AC2... 34 7.4
EF473788_1(EF473788|pid:none) Parnassius autocrator voucher AC1-... 34 7.4
AM231447_1(AM231447|pid:none) Parnassius cephalus irene mitochon... 34 7.4
DQ407774_1(DQ407774|pid:none) Parnassius charltonius voucher UP ... 34 7.4
EU836673_1(EU836673|pid:none) Parnassius mnemosyne haplotype 1.1... 34 7.4
AM231452_1(AM231452|pid:none) Parnassius loxias tashkorensis mit... 34 7.4
AM231430_1(AM231430|pid:none) Parnassius eversmanni felderi mito... 34 7.4
AM231474_1(AM231474|pid:none) Parnassius staudingeri darvasicus ... 34 7.4
EF473824_1(EF473824|pid:none) Parnassius schultei voucher AC14-6... 34 7.4
EU836679_1(EU836679|pid:none) Parnassius mnemosyne haplotype 1.2... 34 7.4
AM231473_1(AM231473|pid:none) Parnassius staudingeri jacobsoni m... 34 7.4
EF473821_1(EF473821|pid:none) Parnassius szechenyii voucher AC13... 34 7.4
AM231429_1(AM231429|pid:none) Parnassius ariadne ariadne mitocho... 34 7.4
AB107920_1(AB107920|pid:none) Limenitis populi jezoensis mitocho... 34 7.4
AM231467_1(AM231467|pid:none) Parnassius cardinal mitochondrial ... 34 7.4
EF473803_1(EF473803|pid:none) Parnassius cardinal voucher AC20-6... 34 7.4
EU092975_1(EU092975|pid:none) Parnassius mnemosyne isolate D757 ... 34 7.4
EU887059_1(EU887059|pid:none) Troglosiro cf. juberthiei PS-2008 ... 34 7.4
DQ407760_1(DQ407760|pid:none) Parnassius acdestis voucher UP 100... 34 7.4
AM231443_1(AM231443|pid:none) Parnassius hunnyngtoni mitochondri... 34 7.4
EF473804_1(EF473804|pid:none) Parnassius delphius namanganus vou... 34 7.4
DQ255995_1(DQ255995|pid:none) Chydaekata acuminata isolate B097A... 33 9.7
AE017346_471(AE017346|pid:none) Cryptococcus neoformans var. neo... 33 9.7
AF377975_1(AF377975|pid:none) Bentheledone sp. CYV-2001 cytochro... 33 9.7
AF525228_1(AF525228|pid:none) Pontastacus leptodactylus cytochro... 33 9.7
AM270125_9(AM270125|pid:none) Aspergillus niger contig An07c0070... 33 9.7
EF473816_1(EF473816|pid:none) Parnassius simonius nigrificatus v... 33 9.7
AY694098_1(AY694098|pid:none) Pseudachorutinae sp. RCG-2004 hapl... 33 9.7
EF057716_1(EF057716|pid:none) Pseudachorutinae sp. RCG-2004 hapl... 33 9.7
DQ256006_1(DQ256006|pid:none) Chydaekata acuminata isolate miks_... 33 9.7
AY184369_1(AY184369|pid:none) Stratiolaelaps lamington cytochrom... 33 9.7
DQ922839_1(DQ922839|pid:none) Cupha prosope voucher NW71-7 cytoc... 33 9.7
DQ407758_1(DQ407758|pid:none) Parnassius simonius voucher UP 100... 33 9.7
DQ992272_1(DQ992272|pid:none) Rakaia denticulata isolate DNA1018... 33 9.7
AY557075_1(AY557075|pid:none) Agrodiaetus sekercioglui voucher M... 33 9.7
EF473815_1(EF473815|pid:none) Parnassius simo avinovi voucher AC... 33 9.7
AP007151_351(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 33 9.7
AY513467_1(AY513467|pid:none) Platycotis sp. 1 CPL-2004 cytochro... 33 9.7
EF632144_1(EF632144|pid:none) Platycotis sp. 1 CPL-2004 voucher ... 33 9.7
AB501202_1(AB501202|pid:none) Herona marathus mitochondrial COI,... 33 9.7
AM231440_1(AM231440|pid:none) Parnassius simo andreji mitochondr... 33 9.7
AY694106_1(AY694106|pid:none) Pseudachorutinae sp. RCG-2004 hapl... 33 9.7

>(Q86L05) RecName: Full=60S ribosomal protein L10a;
&AC117075_90(AC117075|pid:none)
Length = 217

Score = 224 bits (570), Expect(3) = 3e-97
Identities = 114/128 (89%), Positives = 119/128 (92%)
Frame = +3

Query: 291 RKSVQRTRKPSRSSHEKYDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKIN 470
+K + +K + +KYDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKIN
Sbjct: 90 KKIGPKNKKAIKKLSKKYDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKIN 149

Query: 471 DVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTS 650
DVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTS
Sbjct: 150 DVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTS 209

Query: 651 MGPSHRVY 674
MGPSHRVY
Sbjct: 210 MGPSHRVY 217

Score = 151 bits (382), Expect(3) = 3e-97
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1

Query: 22 MSKISSDQVRSIVSQLFKEAQESKRGFLETVELQINLKNYDTKKDKRFSGQIKIGTVTKP 201
MSKISSDQVRSIVSQLFKEAQESKRGFLETVELQINLKNYDTKKDKRFSGQIKIGTVTKP
Sbjct: 1 MSKISSDQVRSIVSQLFKEAQESKRGFLETVELQINLKNYDTKKDKRFSGQIKIGTVTKP 60

Query: 202 KLSVCVFADQQHCDEA 249
KLSVCVFADQQHCDEA
Sbjct: 61 KLSVCVFADQQHCDEA 76

Score = 25.8 bits (55), Expect(3) = 3e-97
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2

Query: 251 TKIGAEFMDIE 283
TKIGAEFMDIE
Sbjct: 77 TKIGAEFMDIE 87

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,370,505,034
Number of extensions: 26380220
Number of successful extensions: 87280
Number of sequences better than 10.0: 339
Number of HSP's gapped: 87243
Number of HSP's successfully gapped: 487
Length of query: 292
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 165
Effective length of database: 640,137,871
Effective search space: 105622748715
Effective search space used: 105622748715
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.44 gvh: 0.30 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.56 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: mitochondrial
36.0 %: nuclear
20.0 %: cytoplasmic

>> prediction for Contig-U15119-1 is mit

VS (DIR, S) 5
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 1
FC (DIR, S) 7
FC-IC (SUB) 4