>Contig-U15106-1 (Contig-U15106-1Q) /CSM_Contig/Contig-U15106-1Q.Seq.d
GTAATTCCTCGATAGATAATTAACATATACAATTAAACATGGGTCGTATG
CATTCAAACGGTAAAGGTATCAGTGGTTCTTCATTACCATACAACAGAAA
ACCACATGCTTGGACTAAACCAACTGCCTCAGAAGTCTGTGAAACTGTCT
GCAAATTAGCCAAGAGAGGTTATACTCCATCCAAAATTGGTTCATCTTTA
AGAGATTCATTAGGTGTAGCCCAAGTTAAAAACGTCACCGGTAGCAAAAT
CTTACGTATCTTAAAGGTTAACGGTCTCGCCCCAACCATCCCAGAAGATT
TATACCATTTAATCAAAAAAGCCGTCACCATCAACAAACATTTACAAAGA
GCCCGTAAAGATTACGATGGTAAATTCCATTTACGTTTAGTTGAATCTCG
TATCCACAGATTAACTCGTCCATACAGAAAGAACGGTACTTTAGCTCCAA
ACTGGAAATACGAATCTAACAACGCTTCAACTTTAGTTGCTTAAACACCC
TCGTTTTAAAAAAATTTAAATAAAATAGGAGGTTTCGGGGTCTTATTAGT
GATTTATCACTAATTTGTACTTTTTTTAACAAAAAATACTGATCCTTACT
ATTAAATCAAAAAAAAAA

est1=VFI206F,1,618
est2=VFI206Z,1,586
est3=VHG639Z,11,564
est4=SFJ609F,14,580
est5=VSI643Z,14,589
est6=FC-BI13E,18,606
est7=VSI643F,18,479
est8=FC-AD19E,32,597
est9=FC-BE08Z,54,585
est10=FC-AY02Z,200,608

nssidn*HIQLNMGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPS
KIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKD
YDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA*tpsf*knlnkiggfgv
llviyh*fvlfltkntdpyy*ikkk

Frame A:
vipr*iiniyn*twvvciqtvkvsvvlhyhttenhmlglnqlpqksvklsan*previlh
pklvhl*eih*v*pklktspvaksyvs*rltvspqpsqkiyti*skkpspstniykepvk
itmvnsiyv*lnlvstd*lvhtertvl*lqtgntnlttlql*llkhprfkki*ik*evsg
sy**fitnlyff*qkililtikskkk


Frame B:
*fldr*ltytikhgsyafkr*ryqwffitiqqkttcld*tnclrsl*nclqisqerlysi
qnwfifkrfircsps*krhr*qnltylkg*rsrpnhprrfipfnqksrhhqqtftksp*r
lrw*ipftfs*isypqinssiqkeryfsskleiri*qrfnfsclntlvlkkfk*nrrfrg
lisdlslictffnkky*slllnqkk


Frame C:
nssidn*HIQLNMGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPS
KIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKD
YDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA*tpsf*knlnkiggfgv
llviyh*fvlfltkntdpyy*ikkk

Query= Contig-U15106-1 (Contig-U15106-1Q)
/CSM_Contig/Contig-U15106-1Q.Seq.d
         (618 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15106-1 (Contig-U15106-1Q) /CSM_Contig/Conti...  1122  0.0
Contig-U15050-1 (Contig-U15050-1Q) /CSM_Contig/Conti...    56  7e-08
Contig-U15626-1 (Contig-U15626-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U15114-1 (Contig-U15114-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U12131-1 (Contig-U12131-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U12445-1 (Contig-U12445-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U15937-1 (Contig-U15937-1Q) /CSM_Contig/Conti...    32  0.96
Contig-U15581-1 (Contig-U15581-1Q) /CSM_Contig/Conti...    32  0.96
Contig-U15224-1 (Contig-U15224-1Q) /CSM_Contig/Conti...    32  0.96
Contig-U14950-1 (Contig-U14950-1Q) /CSM_Contig/Conti...    32  0.96

>Contig-U15106-1 (Contig-U15106-1Q) /CSM_Contig/Contig-U15106-1Q.Seq.d
          Length = 618

 Score = 1122 bits (566), Expect = 0.0
 Identities = 594/608 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaattcctcgatagataattaacatatacaattaaacatgggtcgtatgcattcaaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtaattcctcgatagataattaacatatacaattaaacatgggtcgtatgcattcaaacg 60

                                                                       
Query: 61  gtaaaggtatcagtggttcttcattaccatacaacagaaaaccacatgcttggactaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtaaaggtatcagtggttcttcattaccatacaacagaaaaccacatgcttggactaaac 120

                                                                       
Query: 121 caactgcctcagaagtctgtgaaactgtctgcaaattagccaagagaggttatactccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caactgcctcagaagtctgtgaaactgtctgcaaattagccaagagaggttatactccat 180

                                                                       
Query: 181 ccaaaattggttcatctttaagagattcattaggtgtagcccaagttaaaaacgtcaccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccaaaattggttcatctttaagagattcattaggtgtagcccaagttaaaaacgtcaccg 240

                                                                       
Query: 241 gtagcaaaatcttacgtatcttaaaggttaacggtctcgccccaaccatcccagaagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtagcaaaatcttacgtatcttaaaggttaacggtctcgccccaaccatcccagaagatt 300

                                                                       
Query: 301 tataccatttaatcaaaaaagccgtcaccatcaacaaacatttacaaagagcccgtaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tataccatttaatcaaaaaagccgtcaccatcaacaaacatttacaaagagcccgtaaag 360

                                                                       
Query: 361 attacgatggtaaattccatttacgtttagttgaatctcgtatccacagattaactcgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attacgatggtaaattccatttacgtttagttgaatctcgtatccacagattaactcgtc 420

                                                                       
Query: 421 catacagaaagaacggtactttagctccaaactggaaatacgaatctaacaacgcttcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catacagaaagaacggtactttagctccaaactggaaatacgaatctaacaacgcttcaa 480

                                                                       
Query: 481 ctttagttgcttaaacaccctcgttttnnnnnnntttaaataaaataggaggtttcgggg 540
           |||||||||||||||||||||||||||       ||||||||||||||||||||||||||
Sbjct: 481 ctttagttgcttaaacaccctcgttttaaaaaaatttaaataaaataggaggtttcgggg 540

                                                                       
Query: 541 tcttattagtgatttatcactaatttgtacnnnnnnnaacaaaaaatactgatccttact 600
           ||||||||||||||||||||||||||||||       |||||||||||||||||||||||
Sbjct: 541 tcttattagtgatttatcactaatttgtactttttttaacaaaaaatactgatccttact 600

                   
Query: 601 attaaatc 608
           ||||||||
Sbjct: 601 attaaatc 608


>Contig-U15050-1 (Contig-U15050-1Q) /CSM_Contig/Contig-U15050-1Q.Seq.d
          Length = 1300

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                        
Query: 581  aaaaaatactgatccttactattaaatc 608
            ||||||||||||||||||||||||||||
Sbjct: 1189 aaaaaatactgatccttactattaaatc 1216


>Contig-U15626-1 (Contig-U15626-1Q) /CSM_Contig/Contig-U15626-1Q.Seq.d
          Length = 2010

 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 183  aaaattggttcatcttta 200
            ||||||||||||||||||
Sbjct: 1585 aaaattggttcatcttta 1568


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6072
Number of Sequences: 8402
Number of extensions: 6072
Number of successful extensions: 519
Number of sequences better than 10.0: 35
length of query: 618
length of database: 8,075,542
effective HSP length: 16
effective length of query: 602
effective length of database: 7,941,110
effective search space: 4780548220
effective search space used: 4780548220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U15106-1 (Contig-U15106-1Q) /CSM_Contig/Contig-U15106-1Q.Seq.d
         (618 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ431950) Dictyostelium discoideum cDNA clone:ddv17k02, 3' ...  1005   0.0    3
(BJ413839) Dictyostelium discoideum cDNA clone:ddv17k02, 5' ...  1005   0.0    3
(AU269013) Dictyostelium discoideum vegetative cDNA clone:VS...   979   0.0    2
(BJ389764) Dictyostelium discoideum cDNA clone:dds20a04, 5' ...   979   0.0    2
(AU284721) Dictyostelium discoideum gamete cDNA clone:FC-BI1...   963   0.0    2
(BJ440680) Dictyostelium discoideum cDNA clone:ddv44m10, 3' ...   985   0.0    2
(BJ444176) Dictyostelium discoideum cDNA clone:ddv55b18, 3' ...   965   0.0    3
(C23680) Dictyostelium discoideum gamete cDNA, clone FC-AD19.     783   0.0    4
(AU269012) Dictyostelium discoideum vegetative cDNA clone:VS...   916   0.0    1
(AU284595) Dictyostelium discoideum gamete cDNA clone:FC-BE0...   837   0.0    2
(AU284471) Dictyostelium discoideum gamete cDNA clone:FC-AY0...   611   0.0    3
(EC760477) PSE00000324 rw_mgpallid Polysphondylium pallidum ...    90   2e-23  4
(CJ401547) Molgula tectiformis cDNA, gonad clone:mtgd015f21,...    56   5e-09  3
(CJ390973) Molgula tectiformis cDNA, gonad clone:mtgd015f21,...    56   6e-09  3
(EH217543) USDA-FP_180339 WHMH (pink hibiscus mealybug) Maco...    42   9e-09  5
(EH216324) USDA-FP_179124 WHMH (pink hibiscus mealybug) Maco...    42   1e-08  5
(AX537062) Sequence 663 from Patent WO02064766.                    42   6e-07  4
(AR941736) Sequence 663 from patent US 7101990.                    42   6e-07  4
(CJ422041) Molgula tectiformis cDNA, larva clone:mtlv009a23,...    56   8e-07  3
(CJ404444) Molgula tectiformis cDNA, gonad clone:mtgd020h20,...    56   9e-07  3
(CJ393783) Molgula tectiformis cDNA, gonad clone:mtgd020h20,...    56   1e-06  3
(DV744007) ID0AAG12AD02CM1 ID0AAG Acyrthosiphon pisum cDNA c...    50   1e-06  3
(M58330) C.maltosa autonomously replicating sequence.              42   2e-06  3
(AF508262) Pyrocystis lunula cytoplasmic ribosomal protein S...    32   2e-06  5
(EH218187) USDA-FP_180987 WHMH (pink hibiscus mealybug) Maco...    42   2e-06  4
(X62673) M.domestica mRNA for ribosomal protein S13.               38   4e-06  4
(DT479701) WS02526.BR_L07 PT-MB-N-A-15 Populus trichocarpa c...    42   5e-06  3
(FE339219) CAOF1462.fwd CAOF_Daphnia_pulex_Log50_Library_12 ...    58   1e-05  2
(FE339218) CAOF1462.rev CAOF_Daphnia_pulex_Log50_Library_12 ...    58   1e-05  2
(DT484892) WS02526.B21_L07 PT-MB-N-A-15 Populus trichocarpa ...    40   2e-05  3
(EV467017) MDEST299 Hessian fly salivary gland cDNA Library ...    40   2e-05  3
(CJ423940) Molgula tectiformis cDNA, larva clone:mtlv019i22,...    56   3e-05  2
(CJ414761) Molgula tectiformis cDNA, larva clone:mtlv019i22,...    56   3e-05  2
(DN293475) PL030014A10H02 cDNA from sexually mature hermapho...    48   4e-05  2
(CJ425441) Molgula tectiformis cDNA, larva clone:mtlv023o20,...    56   4e-05  2
(AU283363) Molgula tectiformis mRNA, clone:MT03B2H06R, 5' end.     56   4e-05  2
(CJ425859) Molgula tectiformis cDNA, larva clone:mtlv025c17,...    56   4e-05  2
(AU283420) Molgula tectiformis mRNA, clone:MT03B2H06T, 3' end.     56   4e-05  2
(CJ424969) Molgula tectiformis cDNA, larva clone:mtlv022i24,...    56   4e-05  2
(CJ424967) Molgula tectiformis cDNA, larva clone:mtlv022i22,...    56   4e-05  2
(CJ423611) Molgula tectiformis cDNA, larva clone:mtlv018j22,...    56   4e-05  2
(CJ416233) Molgula tectiformis cDNA, larva clone:mtlv023o20,...    56   5e-05  2
(CJ416650) Molgula tectiformis cDNA, larva clone:mtlv025c17,...    56   5e-05  2
(DN295600) PL03020A2E10 cDNA from sexually mature hermaphodi...    48   5e-05  2
(DN293320) PL030013B10D07 cDNA from sexually mature hermapho...    48   5e-05  2
(CJ415773) Molgula tectiformis cDNA, larva clone:mtlv022i24,...    56   5e-05  2
(CJ415771) Molgula tectiformis cDNA, larva clone:mtlv022i22,...    56   5e-05  2
(CJ414448) Molgula tectiformis cDNA, larva clone:mtlv018j22,...    56   5e-05  2
(DN300612) PL04019B2E08 cDNA from sexually mature hermaphodi...    48   5e-05  2
(DN297421) PL04009A2D12 cDNA from sexually mature hermaphodi...    48   5e-05  2
(DN293996) PL030015B10H02 cDNA from sexually mature hermapho...    48   5e-05  2
(EH431574) NPE00000741 Neocallimastix patriciarum ZAP II cDN...    48   5e-05  2
(EH431704) NPE00000524 Neocallimastix patriciarum ZAP II cDN...    48   6e-05  2
(EW780336) SmSal094 Orange wheat blossom midge salivary glan...    40   1e-04  3
(CD492286) DD3-37D Diff. display PCR-Script Amp lib. pg. 14-...    38   1e-04  4
(CO238794) WS00722.B21_N23 WS-PS-N-A-8 Picea glauca cDNA clo...    36   1e-04  4
(AR550458) Sequence 5589 from patent US 6747137.                   42   1e-04  3
(DN952412) B12 Adult salivary gland cDNA library XWJRABMK St...    38   4e-04  4
(DN952913) C06-SC-P8 Adult salivary gland cDNA library XWJRA...    38   5e-04  4
(CN752798) ApHL3LD-VI-B1 ApHL3LD Acyrthosiphon pisum cDNA cl...    50   7e-04  2
(CN750142) ApDT-VI-C3 ApDT Acyrthosiphon pisum cDNA clone Ap...    50   7e-04  2
(CN585228) USDA-FP_128298 Acyrthosiphon pisum, Pea Aphid Acy...    50   7e-04  2
(CN583940) USDA-FP_127005 Acyrthosiphon pisum, Pea Aphid Acy...    50   8e-04  2
(CN749665) ApAL3SD-XV-B2 ApAL3SD Acyrthosiphon pisum cDNA cl...    50   8e-04  2
(CN749909) ApDT-I-A1 ApDT Acyrthosiphon pisum cDNA clone ApD...    50   8e-04  2
(CN585751) USDA-FP_128822 Acyrthosiphon pisum, Pea Aphid Acy...    50   8e-04  2
(CN585696) USDA-FP_128767 Acyrthosiphon pisum, Pea Aphid Acy...    50   8e-04  2
(CN584584) USDA-FP_127653 Acyrthosiphon pisum, Pea Aphid Acy...    50   8e-04  2
(CN756891) ID0AAA19DG08RM1 ApMS Acyrthosiphon pisum cDNA clo...    50   8e-04  2
(DY229497) ID0AAK7YC24CM1 ApHL3SD Acyrthosiphon pisum cDNA c...    50   8e-04  2
(DY228115) ID0AAK3YC10CM1 ApHL3SD Acyrthosiphon pisum cDNA c...    50   8e-04  2
(DV738263) ID0AFF10AG07CM1 ID0AFF Acyrthosiphon pisum cDNA c...    50   8e-04  2
(CN583103) USDA-FP_126167 Acyrthosiphon pisum, Pea Aphid Acy...    50   8e-04  2
(FF305566) 279363211 Pea aphid whole body normalized full le...    50   8e-04  2
(FF304088) 279358464 Pea aphid whole body normalized full le...    50   8e-04  2
(EX611546) 255375945 Pea aphid whole body normalized full le...    50   8e-04  2
(EX609702) 255370885 Pea aphid whole body normalized full le...    50   8e-04  2
(CF587974) USDA-FP_121100-062 Acyrthosiphon pisum, Pea Aphid...    50   8e-04  2
(DV742460) ID0AFF7AF11CM1 ID0AFF Acyrthosiphon pisum cDNA cl...    50   8e-04  2
(DY230004) ID0AAK8YL07CM1 ApHL3SD Acyrthosiphon pisum cDNA c...    50   8e-04  2
(CV834860) ID0ACC26DD06RM1 ID0ACC Acyrthosiphon pisum cDNA c...    50   8e-04  2
(CV831384) ID0ACC18AG03RM1 ID0ACC Acyrthosiphon pisum cDNA c...    50   8e-04  2
(CN586222) USDA-FP_129294 Acyrthosiphon pisum, Pea Aphid Acy...    50   8e-04  2
(DV742804) ID0AFF8AF04CM1 ID0AFF Acyrthosiphon pisum cDNA cl...    50   8e-04  2
(DV740873) ID0AFF2CG10CM1 ID0AFF Acyrthosiphon pisum cDNA cl...    50   8e-04  2
(DV740171) ID0AFF15CE09CM1 ID0AFF Acyrthosiphon pisum cDNA c...    50   8e-04  2
(DV744939) ID0AAG15CB07CM1 ID0AAG Acyrthosiphon pisum cDNA c...    50   8e-04  2
(EX650210) 256740338 Pea aphid whole body normalized full le...    50   8e-04  2
(DV738834) ID0AFF11DC06CM1 ID0AFF Acyrthosiphon pisum cDNA c...    50   8e-04  2
(EX609458) 255370789 Pea aphid whole body normalized full le...    50   8e-04  2
(CF587535) USDA-FP_120500-088 Acyrthosiphon pisum, Pea Aphid...    50   8e-04  2
(EX608452) 255364741 Pea aphid whole body normalized full le...    50   8e-04  2
(DV745830) ID0AAG3DE01CM1 ID0AAG Acyrthosiphon pisum cDNA cl...    50   8e-04  2
(DV740064) ID0AFF15BD05CM1 ID0AFF Acyrthosiphon pisum cDNA c...    50   8e-04  2
(FF318112) 280395939 Pea aphid whole body normalized full le...    50   8e-04  2
(FF317274) 280387636 Pea aphid whole body normalized full le...    50   8e-04  2
(EX631268) 255508828 Pea aphid whole body normalized full le...    50   8e-04  2
(BP535683) Acyrthosiphon pisum cDNA clone:BCA003014, 5prime ...    50   8e-04  2
(FF308794) 279373138 Pea aphid whole body normalized full le...    50   8e-04  2
(EX631334) 255501804 Pea aphid whole body normalized full le...    50   8e-04  2

>(BJ431950) Dictyostelium discoideum cDNA clone:ddv17k02, 3' end,
           single read.
          Length = 585

 Score = 1005 bits (507), Expect(3) = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Minus


Query: 1   gtaattcctcgatagataattaacatatacaattaaacatgggtcgtatgcattcaaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gtaattcctcgatagataattaacatatacaattaaacatgggtcgtatgcattcaaacg 526


Query: 61  gtaaaggtatcagtggttcttcattaccatacaacagaaaaccacatgcttggactaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gtaaaggtatcagtggttcttcattaccatacaacagaaaaccacatgcttggactaaac 466


Query: 121 caactgcctcagaagtctgtgaaactgtctgcaaattagccaagagaggttatactccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 caactgcctcagaagtctgtgaaactgtctgcaaattagccaagagaggttatactccat 406


Query: 181 ccaaaattggttcatctttaagagattcattaggtgtagcccaagttaaaaacgtcaccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccaaaattggttcatctttaagagattcattaggtgtagcccaagttaaaaacgtcaccg 346


Query: 241 gtagcaaaatcttacgtatcttaaaggttaacggtctcgccccaaccatcccagaagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtagcaaaatcttacgtatcttaaaggttaacggtctcgccccaaccatcccagaagatt 286


Query: 301 tataccatttaatcaaaaaagccgtcaccatcaacaaacatttacaaagagcccgtaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tataccatttaatcaaaaaagccgtcaccatcaacaaacatttacaaagagcccgtaaag 226


Query: 361 attacgatggtaaattccatttacgtttagttgaatctcgtatccacagattaactcgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 attacgatggtaaattccatttacgtttagttgaatctcgtatccacagattaactcgtc 166


Query: 421 catacagaaagaacggtactttagctccaaactggaaatacgaatctaacaacgcttcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 catacagaaagaacggtactttagctccaaactggaaatacgaatctaacaacgcttcaa 106


Query: 481 ctttagttgcttaaacaccctcgtttt 507
           |||||||||||||||||||||||||||
Sbjct: 105 ctttagttgcttaaacaccctcgtttt 79

 Score = 71.9 bits (36), Expect(3) = 0.0
 Identities = 36/36 (100%)
 Strand = Plus / Minus


Query: 515 tttaaataaaataggaggtttcggggtcttattagt 550
           ||||||||||||||||||||||||||||||||||||
Sbjct: 71  tttaaataaaataggaggtttcggggtcttattagt 36

 Score = 38.2 bits (19), Expect(3) = 0.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus


Query: 552 atttatcactaatttgtac 570
           |||||||||||||||||||
Sbjct: 35  atttatcactaatttgtac 17

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 576,392,318
Number of extensions: 30541282
Number of successful extensions: 2078443
Number of sequences better than 10.0: 382
Length of query: 618
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 595
Effective length of database: 93,106,754,628
Effective search space: 55398519003660
Effective search space used: 55398519003660
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U15106-1 (Contig-U15106-1Q) /CSM_Contig/Contig-U15106-1Q.Seq.d
         (618 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB043974_1(AB043974|pid:none) Panax ginseng mRNA for cytoplasmic...   207   1e-52
BT051212_1(BT051212|pid:none) Medicago truncatula clone MTYF1_F2...   207   1e-52
DQ056438_1(DQ056438|pid:none) Lycopersicon esculentum cytoplasmi...   207   2e-52
DQ284485_1(DQ284485|pid:none) Solanum tuberosum clone 007G12 cyt...   207   2e-52
AM445443_1(AM445443|pid:none) Vitis vinifera contig VV78X073039....   206   3e-52
(P59224) RecName: Full=40S ribosomal protein S13-2;  &AB031739_1...   206   4e-52
(P59223) RecName: Full=40S ribosomal protein S13-1;  &AF380636_1...   205   7e-52
CU633899_373(CU633899|pid:none) Podospora anserina genomic DNA c...   203   3e-51
AF378861_1(AF378861|pid:none) Arabidopsis thaliana AT3g60770/T4C...   203   3e-51
EF146546_1(EF146546|pid:none) Populus trichocarpa clone WS0119_C...   202   5e-51
EF083840_1(EF083840|pid:none) Picea sitchensis clone WS0273_L12 ...   202   6e-51
AP007151_223(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...   202   8e-51
FB899541_1(FB899541|pid:none) Sequence 118814 from Patent WO2008...   201   1e-50
EU124938_1(EU124938|pid:none) Arenicola marina ribosomal protein...   197   3e-49
AM048950_1(AM048950|pid:none) Agriotes lineatus mRNA for ribosom...   197   3e-49
AF069299_9(AF069299|pid:none) Arabidopsis thaliana BAC F6N15.  &...   197   3e-49
EU139180_1(EU139180|pid:none) Flustra foliacea putative 40S ribo...   196   3e-49
FN392322_477(FN392322|pid:none) Pichia pastoris GS115 chromosome...   196   4e-49
AL162295_18(AL162295|pid:none) Arabidopsis thaliana DNA chromoso...   196   4e-49
BC072552_1(BC072552|pid:none) Danio rerio ribosomal protein S13,...   196   6e-49
AM920427_594(AM920427|pid:none) Penicillium chrysogenum Wisconsi...   195   1e-48
AK340141_1(AK340141|pid:none) Acyrthosiphon pisum ACYPI008671 mR...   194   1e-48
(P47772) RecName: Full=40S ribosomal protein S13;  &AF402821_1(A...   194   2e-48
(P49393) RecName: Full=40S ribosomal protein S13;  &BC118690_1(B...   193   3e-48
BT079018_1(BT079018|pid:none) Esox lucius clone eluc-evq-517-047...   193   4e-48
DQ886803_1(DQ886803|pid:none) Argas monolakensis 40S ribosomal p...   192   5e-48
(Q69UI2) RecName: Full=40S ribosomal protein S13-1;                   192   5e-48
BT054744_1(BT054744|pid:none) Zea mays full-length cDNA clone ZM...   192   8e-48
AE017344_269(AE017344|pid:none) Cryptococcus neoformans var. neo...   192   8e-48
FB899539_1(FB899539|pid:none) Sequence 118812 from Patent WO2008...   192   8e-48
FM992693_56(FM992693|pid:none) Candida dubliniensis CD36 chromos...   191   1e-47
BC056028_1(BC056028|pid:none) Xenopus laevis ribosomal protein S...   191   1e-47
CP000499_100(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...   191   1e-47
(Q03334) RecName: Full=40S ribosomal protein S13;  &AE014134_153...   191   1e-47
BT049071_1(BT049071|pid:none) Salmo salar clone ssal-evf-527-299...   191   2e-47
FN357887_7(FN357887|pid:none) Schistosoma mansoni genome sequenc...   191   2e-47
CR382138_674(CR382138|pid:none) Debaryomyces hansenii strain CBS...   190   2e-47
AY232093_1(AY232093|pid:none) Drosophila yakuba clone yak-ad_RpS...   190   3e-47
(Q8MUR2) RecName: Full=40S ribosomal protein S13;  &AF514336_1(A...   190   3e-47
CU672275_2(CU672275|pid:none) H.melpomene DNA sequence from clon...   190   3e-47
(P33192) RecName: Full=40S ribosomal protein S13; AltName: Full=...   189   4e-47
AB180431_1(AB180431|pid:none) Plutella xylostella mRNA for Ribos...   189   5e-47
BT058159_1(BT058159|pid:none) Salmo salar clone Contig1060 40S r...   189   5e-47
CR382132_458(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   189   5e-47
BT073605_1(BT073605|pid:none) Oncorhynchus mykiss clone omyk-evn...   189   5e-47
AM048953_1(AM048953|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   189   7e-47
BT058185_1(BT058185|pid:none) Salmo salar clone Contig1441 40S r...   189   7e-47
EF529732_1(EF529732|pid:none) Pinctada martensi ribosomal protei...   188   9e-47
AY815861_1(AY815861|pid:none) Schistosoma japonicum SJCHGC09090 ...   188   9e-47
AY231876_1(AY231876|pid:none) Drosophila yakuba clone yak-em_RpS...   188   1e-46
CU928180_336(CU928180|pid:none) Kluyveromyces thermotolerans str...   187   2e-46
BT080969_1(BT080969|pid:none) Caligus clemensi clone ccle-evs-51...   187   2e-46
AY857470_1(AY857470|pid:none) Suberites domuncula S13 mRNA, comp...   187   3e-46
CR382126_777(CR382126|pid:none) Kluyveromyces lactis strain NRRL...   187   3e-46
(P05756) RecName: Full=40S ribosomal protein S13; AltName: Full=...   187   3e-46
CU928179_378(CU928179|pid:none) Zygosaccharomyces rouxii strain ...   186   3e-46
(P62299) RecName: Full=40S ribosomal protein S13; AltName: Full=...   186   5e-46
DQ673420_1(DQ673420|pid:none) Diaphorina citri putative ribosoma...   186   5e-46
AF526220_1(AF526220|pid:none) Argopecten irradians isolate iolsa...   186   6e-46
AJ783880_1(AJ783880|pid:none) Cicindela littoralis mRNA for S13e...   185   8e-46
EU042117_1(EU042117|pid:none) Epinephelus coioides ribosomal pro...   185   8e-46
(O77303) RecName: Full=40S ribosomal protein S13;  &AJ011706_1(A...   185   8e-46
AY741682_1(AY741682|pid:none) Aedes aegypti 40S ribosomal protei...   185   1e-45
EU153197_1(EU153197|pid:none) Heterocapsa triquetra clone Htr-cD...   185   1e-45
(P78571) RecName: Full=40S ribosomal protein S13;  &X94704_1(X94...   184   2e-45
AL844509_572(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...   182   7e-45
CR940347_718(CR940347|pid:none) Theileria annulata strain Ankara...   182   7e-45
CP000581_344(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...   181   2e-44
AM910993_120(AM910993|pid:none) Plasmodium knowlesi strain H chr...   180   2e-44
AM494956_71(AM494956|pid:none) Leishmania braziliensis chromosom...   179   4e-44
BC011192_1(BC011192|pid:none) Mus musculus ribosomal protein S13...   179   6e-44
FJ208979_1(FJ208979|pid:none) Gillichthys seta 40S ribosomal pro...   178   9e-44
Z19052_1(Z19052|pid:none) D.melanogaster ribosomal protein S17 c...   177   2e-43
CR954201_312(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   177   2e-43
AP008214_110(AP008214|pid:none) Oryza sativa (japonica cultivar-...   177   3e-43
AP004562_14(AP004562|pid:none) Oryza sativa Japonica Group genom...   177   3e-43
BT038654_1(BT038654|pid:none) Zea mays full-length cDNA clone ZM...   176   5e-43
FB899527_1(FB899527|pid:none) Sequence 118800 from Patent WO2008...   174   2e-42
CP000882_15(CP000882|pid:none) Hemiselmis andersenii chromosome ...   168   1e-40
EU969762_1(EU969762|pid:none) Zea mays clone 335330 unknown mRNA.     158   1e-37
EU970225_1(EU970225|pid:none) Zea mays clone 342401 unknown mRNA.     148   1e-34
(P62279) RecName: Full=40S ribosomal protein S13; Flags: Fragment;    139   6e-32
GM015171_199(GM015171|pid:none) Sequence 1 from Patent EP1923464.     137   2e-31
(Q5JGJ4) RecName: Full=30S ribosomal protein S15P/S13e;  &AP0068...   137   2e-31
(Q8TV08) RecName: Full=30S ribosomal protein S15P/S13e;  &AE0094...   134   3e-30
CP000855_521(CP000855|pid:none) Thermococcus onnurineus NA1, com...   134   3e-30
(P54012) RecName: Full=30S ribosomal protein S15P/S13e;  &L77117...   129   9e-29
DQ158858_1(DQ158858|pid:none) Bigelowiella natans nucleomorph ch...   127   2e-28
(A6UUL9) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0007...   124   2e-27
(Q0W938) RecName: Full=30S ribosomal protein S15P/S13e;  &AM1141...   117   3e-25
(A3DMT2) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0005...   117   3e-25
(Q12TM7) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0003...   117   3e-25
(Q9V2K9) RecName: Full=30S ribosomal protein S15P/S13e;  &AJ2482...   116   6e-25
(Q975N5) RecName: Full=30S ribosomal protein S15P/S13e;  &BA0000...   116   6e-25
(Q8TS56) RecName: Full=30S ribosomal protein S15P/S13e;  &AE0102...   115   1e-24
(Q9YCX3) RecName: Full=30S ribosomal protein S15P/S13e;  &BA0000...   114   2e-24
(O29457) RecName: Full=30S ribosomal protein S15P/S13e;  &A69350...   114   2e-24
EU016631_24(EU016631|pid:none) Uncultured Group I marine crenarc...   114   2e-24
(O57805) RecName: Full=30S ribosomal protein S15P/S13e;  &BA0000...   114   3e-24
CP001404_1022(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...   113   5e-24
CP001140_1335(CP001140|pid:none) Desulfurococcus kamchatkensis 1...   113   5e-24
(Q46BC9) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0000...   112   6e-24
(Q4JAI3) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0000...   111   2e-23
(A4WMA2) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0006...   110   4e-23
(A6UQM4) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0007...   109   7e-23
CP000867_1079(CP000867|pid:none) Methanococcus maripaludis C6, c...   108   1e-22
CP001014_838(CP001014|pid:none) Thermoproteus neutrophilus V24St...   108   2e-22
(Q8SRB3) RecName: Full=40S ribosomal protein S13;  &AL590448_107...   107   2e-22
(Q2FS30) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0002...   107   3e-22
AY714842_2(AY714842|pid:none) Uncultured archaeon GZfos26F9 clon...   107   3e-22
EU016635_18(EU016635|pid:none) Uncultured Group I marine crenarc...   106   5e-22
(A2SQ60) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0005...   105   8e-22
(A3MVD1) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0005...   104   2e-21
CP001338_2529(CP001338|pid:none) Candidatus Methanosphaerula pal...   104   2e-21
(A0RTT1) RecName: Full=30S ribosomal protein S15P/S13e;               103   3e-21
AY714871_28(AY714871|pid:none) Uncultured archaeon GZfos9D1 clon...   103   5e-21
(O27474) RecName: Full=30S ribosomal protein S15P/S13e;  &AE0006...   100   3e-20
(Q2NIA9) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0001...    99   1e-19
(A5UMH1) RecName: Full=30S ribosomal protein S15P/S13e;  &CP0006...    98   2e-19
AB195149_1(AB195149|pid:none) Nasutitermes takasagoensis Nts16-2...    96   6e-19
(Q9HJ42) RecName: Full=30S ribosomal protein S15P/S13e;  &AL4450...    94   2e-18
(Q979D0) RecName: Full=30S ribosomal protein S15P/S13e;  &BA0000...    91   3e-17
(Q3IQA3) RecName: Full=30S ribosomal protein S15P/S13e;  &CR9362...    90   6e-17
(Q9HRA2) RecName: Full=30S ribosomal protein S15P/S13e;  &AE0044...    89   8e-17
(Q18HQ4) RecName: Full=30S ribosomal protein S15P/S13e;  &AM1800...    87   5e-16
EF558549_33(EF558549|pid:none) Halorubrum sp. TP009 clone 1 sequ...    83   5e-15
CP001365_611(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49...    79   1e-13
AJ417519_1(AJ417519|pid:none) Oryza sativa partial mRNA for cyto...    54   5e-06
EF576202_1(EF576202|pid:none) Oryza sativa (indica cultivar-grou...    50   4e-05
L01123_1(L01123|pid:none) Rattus norvegicus ribosomal protein S1...    41   0.031
AY325176_1(AY325176|pid:none) Rattus norvegicus Ab2-079 mRNA, co...    37   0.34
AB169977_19(AB169977|pid:none) Moraxella bovis plasmid pMBO-2 DN...    30   0.65
EU016673_31(EU016673|pid:none) Uncultured marine bacterium HF400...    34   2.9
CP000575_37(CP000575|pid:none) Staphylothermus marinus F1, compl...    34   3.8
AM270022_69(AM270022|pid:none) Aspergillus niger contig An02c027...    34   3.8
AM233362_1575(AM233362|pid:none) Francisella tularensis subsp. h...    33   6.4
AB017010_1(AB017010|pid:none) Streptomyces coelicolor gene for C...    33   8.4
AF102271_3(AF102271|pid:none) Streptomyces coelicolor sensor-his...    33   8.4
CP001280_2743(CP001280|pid:none) Methylocella silvestris BL2, co...    33   8.4
(P36909) RecName: Full=Chitinase C;          EC=3.2.1.14; Flags:...    33   8.4

>AB043974_1(AB043974|pid:none) Panax ginseng mRNA for cytoplasmic
           ribosomal protein S13, complete cds.
          Length = 151

 Score =  207 bits (528), Expect = 1e-52
 Identities = 105/151 (69%), Positives = 117/151 (77%)
 Frame = +3

Query: 39  MGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGV 218
           MGRMHS GKGIS S+LPY R P +W K T  +V + +CK AK+G TPS+IG  LRDS G+
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKITPQDVDDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 219 AQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVES 398
           AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 399 RIHRLTRPYRKNGTLAPNWKYESNNASTLVA 491
           RIHRL R Y+K   L P WKYES  ASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,047,077,465
Number of extensions: 21636428
Number of successful extensions: 48609
Number of sequences better than 10.0: 140
Number of HSP's gapped: 48581
Number of HSP's successfully gapped: 141
Length of query: 206
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 83
Effective length of database: 653,084,107
Effective search space: 54205980881
Effective search space used: 54205980881
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

 psg: 0.68  gvh: 0.27  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U15106-1 is mit