| Contig-U15102-1 |
| Contig ID |
Contig-U15102-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
540 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
3516824 |
| End point |
3517363 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
3 |
| Number of EST |
4 |
| Link to clone list |
U15102 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 1.11 |
| Homology vs DNA |
Query= Contig-U15102-1 (Contig-U15102-1Q) /CSM_Contig/Contig-U15102-1Q.Seq.d
(540 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ414854) Dictyostelium discoideum cDNA clone:ddv20j18, 5' ... 765 0.0 1
(C23645) Dictyostelium discoideum gamete cDNA, clone FC-AC10. 704 0.0 1
(BJ433051) Dictyostelium discoideum cDNA clone:ddv20j18, 3' ... 527 0.0 2
(AU074340) Dictyostelium discoideum slug cDNA, clone SSK426. 462 e-126 1
(EL367947) CCES4102.b1_K18.ab1 CCE(LMS) endive Cichorium end... 50 6e-06 2
(EL366777) CCES2888.b1_O02.ab1 CCE(LMS) endive Cichorium end... 50 6e-06 2
(EC587224) H_H25_B11_03 H Rosa hybrid cultivar cDNA clone H2... 46 9e-05 2
(EX684236) JS7BB82JG Salt and heat stressed Fragaria vesca (... 46 9e-05 2
(EC587766) H_H6_E06_10 H Rosa hybrid cultivar cDNA clone H6E... 46 9e-05 2
(EC587445) H_H2_G11_13 H Rosa hybrid cultivar cDNA clone H2G... 46 9e-05 2
(EC586158) H_H11_F09_11 H Rosa hybrid cultivar cDNA clone H1... 46 9e-05 2
(EX672073) JS3C606JG Heat stressed Fragaria vesca (strain Ha... 46 9e-05 2
(EX688370) JS7CY41JG Salt and heat stressed Fragaria vesca (... 46 9e-05 2
(EX686293) JS7C473JG Salt and heat stressed Fragaria vesca (... 46 9e-05 2
(EX682830) JS7AS10JG Salt and heat stressed Fragaria vesca (... 46 9e-05 2
(BQ104476) fc0497.e Rose Petals (Fragrant Cloud) Lambda Zap ... 46 9e-05 2
(CF349401) fc3079.e Rose Petals (Fragrant Cloud) Lambda Zap ... 46 9e-05 2
(EC589469) W_W4_A01_01 W Rosa luciae cDNA clone W4A01, mRNA ... 46 9e-05 2
(AJ824050) Prunus persica EST, clone S416G9. 40 0.005 2
(CO865569) Mddb5012d07.y1 Mddb Malus x domestica cDNA clone ... 40 0.005 2
(CV627729) Mdfrt3106l23.y1 Mdfrt Malus x domestica cDNA clon... 40 0.005 2
(BG269745) L48-3842T3 Ice plant Lambda Uni-Zap XR expression... 40 0.005 2
(DW353628) PU1_plate31_N04 PU1 Prunus persica cDNA clone PU1... 40 0.005 2
(CO752094) Mdfrt3053i13.y1 Mdfrt Malus x domestica cDNA clon... 40 0.005 2
(CN496466) Mdfw2014p02.y1 Mdfw Malus x domestica cDNA clone ... 40 0.005 2
(CO067318) Mdfw2064d19.y1 Mdfw Malus x domestica cDNA clone ... 40 0.005 2
(CN994626) Mdfw2051p16.y1 Mdfw Malus x domestica cDNA clone ... 40 0.005 2
(CN493501) Mdfw2009h06.y1 Mdfw Malus x domestica cDNA clone ... 40 0.005 2
(CN579612) Mdfw2036e21.y1 Mdfw Malus x domestica cDNA clone ... 40 0.005 2
(CV466980) Mdfrt3096j09.y2 Mdfrt Malus x domestica cDNA clon... 40 0.005 2
(EC588147) W_W10_O12_16 W Rosa luciae cDNA clone W10O12, mRN... 38 0.018 2
(CT954290) N.leucogenys DNA sequence from clone CH271-224A19. 46 0.030 4
(EG978292) GLL053_A10_040 Cyamopsis tetragonoloba (L.) Taub ... 38 0.065 2
(AK110533) Oryza sativa Japonica Group cDNA clone:002-168-A0... 50 0.082 1
(CI199477) Oryza sativa Japonica Group cDNA, clone: 037-M008... 50 0.082 1
(CU657913) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.21 4
(EL401764) CFFS12977.b1_B06.ab1 CFF(LMS) safflower Carthamus... 34 0.24 2
(EH783824) CNSS23058.b1_C05.ab1 CNS(LMS) yellow starthistle ... 34 0.24 2
(EH789049) CNSS29091.b1_F02.ab1 CNS(LMS) yellow starthistle ... 34 0.24 2
(EH785216) CNSS24464.b1_O20.ab1 CNS(LMS) yellow starthistle ... 34 0.24 2
(EL380104) CFFM1729.b1_A02.ab1 CFF(LMS) safflower Carthamus ... 34 0.24 2
(EL407115) CFFS4953.b1_B16.ab1 CFF(LMS) safflower Carthamus ... 34 0.24 2
(EL372867) CFFM10086.b1_L01.ab1 CFF(LMS) safflower Carthamus... 34 0.25 2
(AC104082) Homo sapiens BAC clone RP11-570L13 from 4, comple... 38 0.34 3
(CV048154) EST 13471 Ripe Apricot Fruit Lambda Zap II Librar... 32 0.91 2
(CB822108) EST 2959 Half-Ripe Apricot Fruit Lambda Zap II Li... 32 0.91 2
(AC214318) Chlorocebus aethiops clone CH252-16H18, WORKING D... 40 0.99 4
(AC080183) Homo sapiens chromosome , clone RP11-1O24, comple... 40 1.0 4
(CU012054) Zebrafish DNA sequence from clone DKEYP-117D7 in ... 46 1.3 1
(BX294162) Zebrafish DNA sequence from clone CH211-270C5 in ... 46 1.3 1
(AL935311) Zebrafish DNA sequence from clone CH211-241N16. 46 1.3 1
(EJ457631) 1093017945909 Global-Ocean-Sampling_GS-28-01-01-1... 46 1.3 1
(BX229990) Danio rerio genomic clone DKEY-52D9, genomic surv... 46 1.3 1
(DV738443) ID0AFF10CG10CM1 ID0AFF Acyrthosiphon pisum cDNA c... 46 1.3 1
(FF318441) 280397921 Pea aphid whole body normalized full le... 46 1.3 1
(EX653192) 256782267 Pea aphid whole body normalized full le... 46 1.3 1
(AE017125) Helicobacter hepaticus ATCC 51449, complete genome. 46 1.3 1
(AC136870) Rattus norvegicus clone CH230-77E17, WORKING DRAF... 42 2.0 3
(AC083883) Homo sapiens BAC clone RP11-792N18 from 7, comple... 34 2.1 3
(AC036132) Homo sapiens chromosome 1 clone RP11-178D7 map 1,... 42 2.2 2
(BV513450) rcs95g03.b1 Clint Pan troglodytes verus STS genom... 40 2.3 2
(BX546498) Mouse DNA sequence from clone RP23-217I22 on chro... 42 2.4 4
(AM465638) Vitis vinifera contig VV78X227286.5, whole genome... 40 2.4 2
(BV512962) rbj59d01.g1 Clint Pan troglodytes verus STS genom... 40 2.6 2
(EH735610) CNMM8693.b1_I14.ab1 CNM(LMS) spotted knapweed Cen... 32 3.4 2
(EH741017) CNMS1457.b1_B06.ab1 CNM(LMS) spotted knapweed Cen... 32 3.4 2
(EH747220) CNMS6651.b1_F07.ab1 CNM(LMS) spotted knapweed Cen... 32 3.4 2
(EH748806) CNMS8151.b1_M21.ab1 CNM(LMS) spotted knapweed Cen... 32 3.4 2
(EH748765) CNMS8110.b1_K11.ab1 CNM(LMS) spotted knapweed Cen... 32 3.4 2
(FF382403) MOOA295TF MOO Vigna unguiculata cDNA 5', mRNA seq... 32 3.4 2
(EH743205) CNMS2889.b1_A04.ab1 CNM(LMS) spotted knapweed Cen... 32 3.4 2
(FF548149) MOPFP20TR MOP Vigna unguiculata cDNA 3', mRNA seq... 32 3.4 2
(EH757984) CNSL2807.b1_N05.ab1 CNS(LMS) yellow starthistle C... 32 3.4 2
(EH750585) CNMS9936.b1_P12.ab1 CNM(LMS) spotted knapweed Cen... 32 3.4 2
(FF399302) MOOFF58TF MOO Vigna unguiculata cDNA 5', mRNA seq... 32 3.4 2
(EV259391) MTYDV47TF JCVI-MT1 Medicago truncatula cDNA 5', m... 32 3.4 2
(FG889759) UCRVU08_CCNS10895_g1 Cowpea IT97K-461-4 Mixed Tis... 32 3.4 2
(FG905140) UCRVU08_CCNS3839_g1 Cowpea IT97K-461-4 Mixed Tiss... 32 3.4 2
(EH741331) CNMS15576.b1_O06.ab1 CNM(LMS) spotted knapweed Ce... 32 3.4 2
(FC462260) UCRVU12_CCNX752_b1 Cowpea UCR 2563 Mixed Tissue a... 32 3.4 2
(FG889758) UCRVU08_CCNS10895_b1 Cowpea IT97K-461-4 Mixed Tis... 32 3.4 2
(CA922460) EST640178 MTUS Medicago truncatula cDNA clone MTU... 32 3.4 2
(EV259664) MTYDY59TF JCVI-MT1 Medicago truncatula cDNA 5', m... 32 3.4 2
(AW585850) EST317473 MHAM Medicago truncatula/Glomus versifo... 32 3.4 2
(BQ149584) NF106A09FL1F1069 Developing flower Medicago trunc... 32 3.4 2
(BF636614) NF091D07DT1F1061 Drought Medicago truncatula cDNA... 32 3.4 2
(FF555555) MOPFP20TF MOP Vigna unguiculata cDNA 5', mRNA seq... 32 3.4 2
(CA901814) PCSC10481 Scarlet Runner Bean Suspensor Region Tr... 32 3.4 2
(AL359553) Human DNA sequence from clone RP5-871G17 on chrom... 42 3.4 2
(BE316187) NF030B05LF1F1041 Developing leaf Medicago truncat... 32 3.5 2
(AL378902) Medicago truncatula EST MtBB41B11F1 : T3 end of c... 32 3.5 2
(AC170561) Bos taurus clone CH240-242J12, WORKING DRAFT SEQU... 36 4.2 5
(AZ928897) 479.dif19e03.s1 Saccharomyces kluyveri Lachancea ... 44 5.1 1
(EJ006625) 1091139234541 Global-Ocean-Sampling_GS-26-01-01-1... 44 5.1 1
(AM874987) Venerupis (Ruditapes) philippinarum EST, 5' end s... 44 5.1 1
(AM869775) Venerupis (Ruditapes) decussatus EST, 5' end sequ... 44 5.1 1
(CX605928) CT02042B2E02 Equine Articular Cartilage cDNA Libr... 44 5.1 1
(CO245816) AGENCOURT_26527423 NIH_MGC_212 Homo sapiens cDNA ... 44 5.1 1
(AC119692) Rattus norvegicus clone CH230-430A23, *** SEQUENC... 42 6.8 2
(AG667431) Macaca fuscata fuscata DNA, clone: MSB2-090A24_F,... 40 8.2 2
>(BJ414854) Dictyostelium discoideum cDNA clone:ddv20j18, 5' end,
single read.
Length = 538
Score = 765 bits (386), Expect = 0.0
Identities = 395/399 (98%)
Strand = Plus / Plus
Query: 1 atttttaaagtatcgaataaacttatatttataaaaatgacagaaattcttagatattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttttaaagtatcgaataaacttatatttataaaaatgacagaaattcttagatattgt 60
Query: 61 caaggtatcatgcaacgtggtatcaaagaatctattaaaacattatattacacaggtgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaggtatcatgcaacgtggtatcaaagaatctattaaaacattatattacacaggtgaa 120
Query: 121 ctcaaatttggtacattagttggtgttgataaagttggtaatagatattatgaaaatagg 180
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 121 ctcaaatttggtacattagttggtgttgataaagttgntnntagatattatgaaaataga 180
Query: 181 caagaaatctatggaagacatagatgggtagaatatggagattacaaatcaaatgatcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caagaaatctatggaagacatagatgggtagaatatggagattacaaatcaaatgatcca 240
Query: 241 accaccatcccaccagaatatcacagttggattcaccacgtttctgataaactcccaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 accaccatcccaccagaatatcacagttggattcaccacgtttctgataaactcccaagt 300
Query: 301 gaaatgcttccattttcaccaacatacaaaagaccacatattgccaatccaactggtact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaatgcttccattttcaccaacatacaaaagaccacatattgccaatccaactggtact 360
Query: 361 gatggtgcctatacaccaccaaatttcttattcaatatt 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatggtgcctatacaccaccaaatttcttattcaatatt 399
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 465,928,486
Number of extensions: 26900397
Number of successful extensions: 2148872
Number of sequences better than 10.0: 106
Length of query: 540
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 517
Effective length of database: 93,106,754,628
Effective search space: 48136192142676
Effective search space used: 48136192142676
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.14 |
| Homology vs Protein |
Query= Contig-U15102-1 (Contig-U15102-1Q) /CSM_Contig/Contig-U15102-1Q.Seq.d
(540 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE017345_399(AE017345|pid:none) Cryptococcus neoformans var. neo... 92 9e-18
AK340695_1(AK340695|pid:none) Acyrthosiphon pisum ACYPI007810 mR... 91 1e-17
BT075977_1(BT075977|pid:none) Caligus rogercresseyi clone crog-e... 88 2e-16
AY814630_1(AY814630|pid:none) Schistosoma japonicum SJCHGC08585 ... 86 6e-16
BT077831_1(BT077831|pid:none) Lepeophtheirus salmonis Pacific fo... 84 3e-15
AY118779_1(AY118779|pid:none) Drosophila melanogaster GH12382 fu... 82 9e-15
AE014134_446(AE014134|pid:none) Drosophila melanogaster chromoso... 82 9e-15
BC084520_1(BC084520|pid:none) Xenopus tropicalis hypothetical LO... 81 2e-14
EF084009_1(EF084009|pid:none) Picea sitchensis clone WS0274_K03 ... 81 2e-14
DQ215400_1(DQ215400|pid:none) Taeniopygia guttata clone 0061P000... 80 3e-14
DQ215401_1(DQ215401|pid:none) Taeniopygia guttata clone 0058P005... 80 3e-14
AY232196_1(AY232196|pid:none) Drosophila yakuba clone yak-ad_CG3... 80 3e-14
FN357617_7(FN357617|pid:none) Schistosoma mansoni genome sequenc... 80 4e-14
AY892588_1(AY892588|pid:none) Synthetic construct Homo sapiens c... 79 8e-14
(O97725) RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha s... 77 3e-13
AK222619_1(AK222619|pid:none) Homo sapiens mRNA for 13kDa differ... 76 5e-13
AC018727_10(AC018727|pid:none) Oryza sativa chromosome 10 BAC OS... 76 6e-13
(Q7TMF3) RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha s... 75 8e-13
CP001333_77(CP001333|pid:none) Micromonas sp. RCC299 chromosome ... 74 2e-12
BT053258_1(BT053258|pid:none) Medicago truncatula clone MTYFP_FQ... 73 5e-12
AK220742_1(AK220742|pid:none) Arabidopsis thaliana mRNA for hypo... 73 5e-12
BC100047_1(BC100047|pid:none) Danio rerio zgc:112053, mRNA (cDNA... 73 5e-12
CP000613_900(CP000613|pid:none) Rhodospirillum centenum SW, comp... 73 5e-12
(Q9M9M9) RecName: Full=Probable NADH dehydrogenase [ubiquinone] ... 73 5e-12
BX897700_705(BX897700|pid:none) Bartonella quintana str. Toulous... 72 7e-12
CP000115_1753(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 71 2e-11
BT084887_1(BT084887|pid:none) Zea mays full-length cDNA clone ZM... 71 2e-11
AL670009_34(AL670009|pid:none) Neurospora crassa DNA linkage gro... 71 2e-11
CP001196_2273(CP001196|pid:none) Oligotropha carboxidovorans OM5... 71 2e-11
CP000463_2611(CP000463|pid:none) Rhodopseudomonas palustris BisA... 70 3e-11
DQ215405_1(DQ215405|pid:none) Taeniopygia guttata clone 0063P003... 70 3e-11
AM260525_782(AM260525|pid:none) Bartonella tribocorum CIP 105476... 70 4e-11
CP000738_943(CP000738|pid:none) Sinorhizobium medicae WSM419, co... 69 6e-11
CP000699_2540(CP000699|pid:none) Sphingomonas wittichii RW1, com... 69 8e-11
BA000012_153(BA000012|pid:none) Mesorhizobium loti MAFF303099 DN... 68 1e-10
CP001191_1518(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 68 1e-10
CP000633_1314(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 68 1e-10
CP001562_604(CP001562|pid:none) Bartonella grahamii as4aup, comp... 68 1e-10
AE007869_1301(AE007869|pid:none) Agrobacterium tumefaciens str. ... 68 2e-10
CP000524_529(CP000524|pid:none) Bartonella bacilliformis KC583, ... 68 2e-10
CP001074_1919(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 68 2e-10
AM236080_2090(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 68 2e-10
CP000394_1736(CP000394|pid:none) Granulibacter bethesdensis CGDN... 68 2e-10
CU640366_755(CU640366|pid:none) Podospora anserina genomic DNA c... 67 3e-10
CP000774_3279(CP000774|pid:none) Parvibaculum lavamentivorans DS... 67 3e-10
CP000230_2435(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 67 4e-10
BT048955_1(BT048955|pid:none) Salmo salar clone ssal-evd-571-042... 67 4e-10
CP000250_3022(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 67 4e-10
FM992690_211(FM992690|pid:none) Candida dubliniensis CD36 chromo... 66 5e-10
CP001389_1086(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 66 7e-10
BA000040_4279(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 65 1e-09
CP000390_1709(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 65 1e-09
BT075112_1(BT075112|pid:none) Osmerus mordax clone omor-eva-004-... 65 1e-09
BX572600_254(BX572600|pid:none) Rhodopseudomonas palustris CGA00... 65 1e-09
AD3385(AD3385) NADH-ubiquinone oxidoreductase chain b17.2 like p... 64 3e-09
CU234118_3289(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 63 4e-09
CP000498_629(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 63 6e-09
CP001001_301(CP001001|pid:none) Methylobacterium radiotolerans J... 62 7e-09
CP000697_169(CP000697|pid:none) Acidiphilium cryptum JF-5, compl... 62 7e-09
CP000661_1432(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 62 7e-09
CP000084_718(CP000084|pid:none) Candidatus Pelagibacter ubique H... 62 1e-08
CP000362_2649(CP000362|pid:none) Roseobacter denitrificans OCh 1... 61 2e-08
CP000489_1255(CP000489|pid:none) Paracoccus denitrificans PD1222... 61 2e-08
CP001280_182(CP001280|pid:none) Methylocella silvestris BL2, com... 60 3e-08
CP000449_1258(CP000449|pid:none) Maricaulis maris MCS10, complet... 60 3e-08
CP000595_249(CP000595|pid:none) Ostreococcus lucimarinus CCE9901... 60 5e-08
AM270386_24(AM270386|pid:none) Aspergillus niger contig An17c004... 59 6e-08
AM999887_1017(AM999887|pid:none) Wolbachia endosymbiont of Culex... 59 8e-08
AE017321_17(AE017321|pid:none) Wolbachia endosymbiont strain TRS... 59 1e-07
AM920436_1764(AM920436|pid:none) Penicillium chrysogenum Wiscons... 58 1e-07
CR382128_26(CR382128|pid:none) Yarrowia lipolytica strain CLIB12... 58 2e-07
AE017196_991(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 57 4e-07
CP001079_48(CP001079|pid:none) Anaplasma marginale str. Florida,... 57 4e-07
CR925677_119(CR925677|pid:none) Ehrlichia ruminantium str. Garde... 56 5e-07
CR767821_135(CR767821|pid:none) Ehrlichia ruminantium strain Wel... 56 7e-07
CP000158_2215(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 55 9e-07
CP000847_1075(CP000847|pid:none) Rickettsia akari str. Hartford,... 55 9e-07
CP000237_509(CP000237|pid:none) Neorickettsia sennetsu strain Mi... 54 3e-06
CP000107_124(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 53 4e-06
CP000927_2550(CP000927|pid:none) Caulobacter sp. K31, complete g... 53 4e-06
CP000264_2720(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 52 8e-06
CP000683_796(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 52 1e-05
CP001016_1916(CP001016|pid:none) Beijerinckia indica subsp. indi... 52 1e-05
EU961522_1(EU961522|pid:none) Zea mays clone 236135 unknown mRNA. 52 1e-05
CP000830_1383(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 52 1e-05
EU960574_1(EU960574|pid:none) Zea mays clone 226234 unknown mRNA. 52 1e-05
CP000053_181(CP000053|pid:none) Rickettsia felis URRWXCal2, comp... 51 2e-05
AM889285_911(AM889285|pid:none) Gluconacetobacter diazotrophicus... 50 5e-05
AE006914_1107(AE006914|pid:none) Rickettsia conorii str. Malish ... 49 6e-05
CP000087_367(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 49 8e-05
AM494475_1583(AM494475|pid:none) Orientia tsutsugamushi Boryong ... 49 8e-05
(Q9ZCK4) RecName: Full=Uncharacterized protein RP725; &AJ235273... 48 2e-04
CP001227_172(CP001227|pid:none) Rickettsia peacockii str. Rustic... 47 3e-04
EU964609_1(EU964609|pid:none) Zea mays clone 280323 oxidoreducta... 47 4e-04
AP008215_1029(AP008215|pid:none) Oryza sativa (japonica cultivar... 46 5e-04
AY080614_1(AY080614|pid:none) Arabidopsis thaliana unknown prote... 46 5e-04
EU972992_1(EU972992|pid:none) Zea mays clone 391334 hypothetical... 46 7e-04
AE017197_681(AE017197|pid:none) Rickettsia typhi str. Wilmington... 45 0.001
AC142394_17(AC142394|pid:none) Medicago truncatula clone mth2-11... 44 0.002
AY815958_1(AY815958|pid:none) Schistosoma japonicum SJCHGC04924 ... 37 0.33
AB045279_1(AB045279|pid:none) Rattus norvegicus beta3GnT5 mRNA f... 35 0.96
(Q8BGY6) RecName: Full=UDP-GlcNAc:betaGal beta-1,3-N-acetylgluco... 35 0.96
CP000441_325(CP000441|pid:none) Burkholderia ambifaria AMMD chro... 35 1.3
AB059620_1(AB059620|pid:none) Mus musculus beta3GnT5 mRNA for be... 35 1.6
AY029203_1(AY029203|pid:none) Mus musculus beta1,3 N-acetyglucos... 35 1.6
CP001026_914(CP001026|pid:none) Burkholderia ambifaria MC40-6 ch... 35 1.6
AX971849_1(AX971849|pid:none) Sequence 2652 from Patent EP110480... 34 2.1
CP000615_1353(CP000615|pid:none) Burkholderia vietnamiensis G4 c... 34 2.8
AP006841_3015(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 33 3.6
AL663015_19(AL663015|pid:none) Oryza sativa genomic DNA, chromos... 33 4.8
(Q9BYG0) RecName: Full=UDP-GlcNAc:betaGal beta-1,3-N-acetylgluco... 33 6.2
AB209517_1(AB209517|pid:none) Homo sapiens mRNA for beta-1,3-N-a... 33 6.2
AK341019_1(AK341019|pid:none) Acyrthosiphon pisum ACYPI006947 mR... 32 8.1
>AE017345_399(AE017345|pid:none) Cryptococcus neoformans var.
neoformans JEC21 chromosome 5, complete sequence.
Length = 144
Score = 92.0 bits (227), Expect = 9e-18
Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Frame = +1
Query: 37 MTEILRYCQGIMQRGIKESIKTLYYTGELKFGTLVGVDKVGNRYYEN---RQEIYGRHRW 207
M + R + G KE + L Y G+ K+G LVG D+ GNRY+E ++E+ GRHRW
Sbjct: 1 MVSLARTIRHFRLVGFKEWFRQLTYIGDAKYGRLVGTDQFGNRYFEQLDPKEELPGRHRW 60
Query: 208 VEYGDYKSNDPTTIPPEYHSWIHHVSDKLPSE---MLPFSPTYKRPHIANPTGTDGAY 372
++Y N + + PE+HSWIHH+ P++ M SP +K P+ N TGT G +
Sbjct: 61 IDYSQDDFN-ASQVTPEWHSWIHHIRKDAPTDDVIMKQLSPPWKAPYTENMTGTRGHF 117
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 833,162,622
Number of extensions: 17418119
Number of successful extensions: 50918
Number of sequences better than 10.0: 113
Number of HSP's gapped: 50799
Number of HSP's successfully gapped: 113
Length of query: 180
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 60
Effective length of database: 662,793,784
Effective search space: 39767627040
Effective search space used: 39767627040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
1 |
| FC-IC (SUB) |
0 |