NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15098-1
Contig ID Contig-U15098-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15098-1 (Contig-U15098-1Q) /CSM_Contig/Contig-U15098-1Q.Seq.d
TAAAATACAAGCAAATAAATTTATAGAATTAAGTTGGAAAACCGCATTAA
AAATGGTATTTAAAGTGTTATTAAATAAAAAAAATAAAGTAGATTTAAAT
TGTTTTAGTCCTTAATTCAAAATGCCATCACCAATCAACAGAACCAAAAT
CGTCAAAAAGAAGACCACCAAATTCAACAGATTCCAATCTGATCTCTTCA
AAAGAGTTGGTGCTTCATGGAGAAAACCAAGAGGTATTGATAACAGAGTC
AGAAGAAGATTCTCTGGTTCCCGTGCTATGCCAAGCATTGGTTTCGGTTC
TGCCAAAGCCACCAAAGATGTCTGCCCAGATGGTTTCAAACGTTTCGTTA
TCAGAAATGTTCAAGAATTAGAAGTTCTCTTAATGCAAAACCGTAGATAC
GCTGCCGTCATCTTCCACGGTGTGCTCTGCTAAATCCAGAAAAGCTATTG
TTGAAAGAGCTGCTGAACTCAACATTAAAGTAACTACTCCAAACGCCAGA
TTAAGATCAGAAGAAAGAGAATAAACAGTTATAAAATGTTTTTAAATATA
CAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 587
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1074040
End point 1074517
Strand (PLUS/MINUS) PLUS
Number of clones 25
Number of EST 32
Link to clone list U15098
List of clone(s) 

est1=VFE595F,1,416
est2=VFJ585Z,80,447
est3=VFK582F,97,567
est4=VFK582Z,97,551
est5=VFF375F,99,567
est6=VFF375Z,99,551
est7=VFH173E,99,534
est8=VSA120E,110,587
est9=VSH816F,110,567
est10=VSH816Z,110,519
est11=VSJ131F,110,553
est12=VSH824E,111,551
est13=VSI630E,111,550
est14=VSA858E,115,578
est15=VSJ731F,115,553
est16=VSJ731Z,115,552
est17=FC-AC01E,118,581
est18=FC-BI15E,118,570
est19=FC-BJ22E,118,570
est20=VSE247E,118,581
est21=FC-BM10E,119,580
est22=FC-AX12E,122,553
est23=VSI486F,127,567
est24=VSI486Z,127,533
est25=VSA842E,129,558
est26=VSJ647Z,130,551
est27=VSJ647F,137,567
est28=SSE391E,138,566
est29=VSD268Z,149,551
est30=VSD268F,169,567
est31=VSA311E,212,559
est32=VSA325E,212,559
Translated Amino Acid sequence 
kiqankfielswktalkmvfkvllnkknkvdlncfsp*FKMPSPINRTKIVKKKTTKFNR
FQSDLFKRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNV
QELEVLLMQNRRYAAVIFHGVLC*iqksyc*ksc*tqh*snyskrqikirrkrinsykmf
lniqqkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
*ntsk*iyriklenrikngi*svik*kk*srfklf*sliqnaitnqqnqnrqkedhqiqq
ipi*slqkswcfmektkry**qsqkkilwfpcyakhwfrfcqshqrclprwfqtfryqkc
srirsslnakp*ircrhlprcallnpeklllkellnstlk*llqtpd*dqkkenkql*nv
fkyttkkkkkkkkkk


Frame B:
kiqankfielswktalkmvfkvllnkknkvdlncfsp*FKMPSPINRTKIVKKKTTKFNR
FQSDLFKRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNV
QELEVLLMQNRRYAAVIFHGVLC*iqksyc*ksc*tqh*snyskrqikirrkrinsykmf
lniqqkkkkkkkkkk


Frame C:
kykqinl*n*vgkph*kwylkcy*ikkik*i*ivlvlnskchhqstepksskrrppnstd
snlisskelvlhgenqevliteseedslvpvlcqalvsvlpkppkmsaqmvsnvslsemf
kn*kfs*cktvdtlpssstvcsaksrkaiveraaelnikvttpnarlrseere*tvikcf
*iynkkkkkkkkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15098-1 (Contig-U15098-1Q)
/CSM_Contig/Contig-U15098-1Q.Seq.d
         (587 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15098-1 (Contig-U15098-1Q) /CSM_Contig/Conti...  1051  0.0
Contig-U16566-1 (Contig-U16566-1Q) /CSM_Contig/Conti...   151  1e-36
Contig-U05709-1 (Contig-U05709-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U04138-1 (Contig-U04138-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U14442-1 (Contig-U14442-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U11292-1 (Contig-U11292-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U11160-1 (Contig-U11160-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U10457-1 (Contig-U10457-1Q) /CSM_Contig/Conti...    34  0.23

>Contig-U15098-1 (Contig-U15098-1Q) /CSM_Contig/Contig-U15098-1Q.Seq.d
          Length = 587

 Score = 1051 bits (530), Expect = 0.0
 Identities = 546/554 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaatacaagcaaataaatttatagaattaagttggaaaaccgcattaaaaatggtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taaaatacaagcaaataaatttatagaattaagttggaaaaccgcattaaaaatggtatt 60

                                                                       
Query: 61  taaagtgttattaaatnnnnnnnntaaagtagatttaaattgttttagtccttaattcaa 120
           ||||||||||||||||        ||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaagtgttattaaataaaaaaaataaagtagatttaaattgttttagtccttaattcaa 120

                                                                       
Query: 121 aatgccatcaccaatcaacagaaccaaaatcgtcaaaaagaagaccaccaaattcaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgccatcaccaatcaacagaaccaaaatcgtcaaaaagaagaccaccaaattcaacag 180

                                                                       
Query: 181 attccaatctgatctcttcaaaagagttggtgcttcatggagaaaaccaagaggtattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attccaatctgatctcttcaaaagagttggtgcttcatggagaaaaccaagaggtattga 240

                                                                       
Query: 241 taacagagtcagaagaagattctctggttcccgtgctatgccaagcattggtttcggttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taacagagtcagaagaagattctctggttcccgtgctatgccaagcattggtttcggttc 300

                                                                       
Query: 301 tgccaaagccaccaaagatgtctgcccagatggtttcaaacgtttcgttatcagaaatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgccaaagccaccaaagatgtctgcccagatggtttcaaacgtttcgttatcagaaatgt 360

                                                                       
Query: 361 tcaagaattagaagttctcttaatgcaaaaccgtagatacgctgccgtcatcttccacgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaagaattagaagttctcttaatgcaaaaccgtagatacgctgccgtcatcttccacgg 420

                                                                       
Query: 421 tgtgctctgctaaatccagaaaagctattgttgaaagagctgctgaactcaacattaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtgctctgctaaatccagaaaagctattgttgaaagagctgctgaactcaacattaaag 480

                                                                       
Query: 481 taactactccaaacgccagattaagatcagaagaaagagaataaacagttataaaatgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taactactccaaacgccagattaagatcagaagaaagagaataaacagttataaaatgtt 540

                         
Query: 541 tttaaatatacaac 554
           ||||||||||||||
Sbjct: 541 tttaaatatacaac 554


>Contig-U16566-1 (Contig-U16566-1Q) /CSM_Contig/Contig-U16566-1Q.Seq.d
          Length = 2153

 Score =  151 bits (76), Expect = 1e-36
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    taaaatacaagcaaataaatttatagaattaagttggaaaaccgcattaaaaatggtatt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 taaaatacaagcaaataaatttatagaattaagttggaaaaccgcattaaaaatggtatt 1062

                            
Query: 61   taaagtgttattaaat 76
            ||||||||||||||||
Sbjct: 1063 taaagtgttattaaat 1078


>Contig-U05709-1 (Contig-U05709-1Q) /CSM_Contig/Contig-U05709-1Q.Seq.d
          Length = 593

 Score = 38.2 bits (19), Expect = 0.015
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 57  tatttaaagtgttattaaa 75
           |||||||||||||||||||
Sbjct: 519 tatttaaagtgttattaaa 501


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7701
Number of Sequences: 8402
Number of extensions: 7701
Number of successful extensions: 745
Number of sequences better than 10.0: 79
length of query: 587
length of database: 8,075,542
effective HSP length: 16
effective length of query: 571
effective length of database: 7,941,110
effective search space: 4534373810
effective search space used: 4534373810
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.11
Homology vs DNA 
Query= Contig-U15098-1 (Contig-U15098-1Q) /CSM_Contig/Contig-U15098-1Q.Seq.d
         (587 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ415496) Dictyostelium discoideum cDNA clone:ddv22c21, 5' ...   646   0.0    2
(BJ410251) Dictyostelium discoideum cDNA clone:ddv11f19, 5' ...   644   0.0    2
(BJ433728) Dictyostelium discoideum cDNA clone:ddv22c21, 3' ...   646   0.0    2
(BJ428402) Dictyostelium discoideum cDNA clone:ddv11f19, 3' ...   644   0.0    2
(AU261291) Dictyostelium discoideum vegetative cDNA clone:VS...   615   0.0    2
(AU261790) Dictyostelium discoideum vegetative cDNA clone:VS...   613   0.0    2
(AU269451) Dictyostelium discoideum vegetative cDNA clone:VS...   622   0.0    2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...   609   0.0    2
(AU268033) Dictyostelium discoideum vegetative cDNA clone:VS...   620   0.0    2
(C23642) Dictyostelium discoideum gamete cDNA, clone FC-AC01.     607   0.0    2
(AU268032) Dictyostelium discoideum vegetative cDNA clone:VS...   620   0.0    2
(AU270380) Dictyostelium discoideum vegetative cDNA clone:VS...   613   0.0    2
(AU270381) Dictyostelium discoideum vegetative cDNA clone:VS...   613   0.0    2
(AU284759) Dictyostelium discoideum gamete cDNA clone:FC-BJ2...   607   0.0    2
(AU284463) Dictyostelium discoideum gamete cDNA clone:FC-AX1...   599   0.0    2
(AU268771) Dictyostelium discoideum vegetative cDNA clone:VS...   589   0.0    2
(AU262970) Dictyostelium discoideum vegetative cDNA clone:VS...   607   0.0    2
(AU268991) Dictyostelium discoideum vegetative cDNA clone:VS...   620   0.0    2
(AU261778) Dictyostelium discoideum vegetative cDNA clone:VS...   585   0.0    2
(AU268019) Dictyostelium discoideum vegetative cDNA clone:VS...   563   0.0    3
(AU284828) Dictyostelium discoideum gamete cDNA clone:FC-BM1...   589   0.0    2
(AU270253) Dictyostelium discoideum vegetative cDNA clone:VS...   569   0.0    2
(AU284723) Dictyostelium discoideum gamete cDNA clone:FC-BI1...   599   0.0    2
(AU037871) Dictyostelium discoideum slug cDNA, clone SSE391.      567   0.0    2
(AU270254) Dictyostelium discoideum vegetative cDNA clone:VS...   583   0.0    2
(BJ410021) Dictyostelium discoideum cDNA clone:ddv10m23, 5' ...   654   0.0    2
(AU263749) Dictyostelium discoideum vegetative cDNA clone:VS...   545   0.0    2
(AU268772) Dictyostelium discoideum vegetative cDNA clone:VS...   589   0.0    2
(AU268020) Dictyostelium discoideum vegetative cDNA clone:VS...   745   0.0    2
(AU263748) Dictyostelium discoideum vegetative cDNA clone:VS...   505   0.0    2
(BJ413482) Dictyostelium discoideum cDNA clone:ddv15a19, 5' ...   644   0.0    2
(BJ433125) Dictyostelium discoideum cDNA clone:ddv20i21, 3' ...   648   0.0    2
(AU261423) Dictyostelium discoideum vegetative cDNA clone:VS...   420   0.0    2
(AU261412) Dictyostelium discoideum vegetative cDNA clone:VS...   420   0.0    2
(AU268990) Dictyostelium discoideum vegetative cDNA clone:VS...   557   e-154  1
(BJ431829) Dictyostelium discoideum cDNA clone:ddv15a19, 3' ...   178   e-109  3
(AU269452) Dictyostelium discoideum vegetative cDNA clone:VS...   182   9e-42  1
(AU266790) Dictyostelium discoideum vegetative cDNA clone:VS...   151   1e-34  2
(BJ417245) Dictyostelium discoideum cDNA clone:ddv29p24, 5' ...   151   1e-34  2
(AU271819) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   151   1e-34  2
(AU261517) Dictyostelium discoideum vegetative cDNA clone:VS...   151   1e-34  2
(AU271379) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   151   1e-34  2
(AU062063) Dictyostelium discoideum slug cDNA, clone SLH429.      145   6e-33  2
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   143   2e-32  2
(U02291) Dictyostelium discoideum mitochondrial NADH:ubiquin...   143   2e-32  2
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge...   127   1e-27  2
(CT775343) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   4e-15  2
(CT798124) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   4e-15  2
(CT810757) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   4e-15  2
(CT811924) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   4e-15  2
(CT821819) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(CT818624) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(CT771207) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(CT792863) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(CT805409) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(CT794970) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(CT798444) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(CT821536) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(CT788869) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(CT785369) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   5e-15  2
(AU271820) Dictyostelium discoideum gamete cDNA clone:FC-IC0...    82   4e-14  2
(CT784902) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   2e-13  2
(CT757566) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   2e-13  2
(CT815713) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-13  2
(CT751527) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-13  2
(CT749702) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-13  2
(CT757289) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-13  2
(CT801503) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-13  2
(CT819652) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-13  2
(CT748471) Paramecium tetraurelia 5-PRIME EST from clone LK0...    74   8e-13  2
(CT769477) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   3e-12  2
(CT796577) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT807335) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT816997) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT745499) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT782926) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT771397) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT820610) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT795686) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT788908) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT820643) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT743210) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT781940) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   4e-12  2
(CT821415) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT803349) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT800434) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT783253) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT778057) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT764890) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT761641) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT758436) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT756765) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT756551) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT748124) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT741859) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT741440) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT740413) Paramecium tetraurelia 5-PRIME EST from clone LK0...    82   3e-11  1
(CT820826) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   1e-10  1
(CT818707) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   1e-10  1
(CT811261) Paramecium tetraurelia 5-PRIME EST from clone LK0...    80   1e-10  1

>(BJ415496) Dictyostelium discoideum cDNA clone:ddv22c21, 5' end,
           single read.
          Length = 467

 Score =  646 bits (326), Expect(2) = 0.0
 Identities = 326/326 (100%)
 Strand = Plus / Plus


Query: 98  aattgttttagtccttaattcaaaatgccatcaccaatcaacagaaccaaaatcgtcaaa 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   aattgttttagtccttaattcaaaatgccatcaccaatcaacagaaccaaaatcgtcaaa 61


Query: 158 aagaagaccaccaaattcaacagattccaatctgatctcttcaaaagagttggtgcttca 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  aagaagaccaccaaattcaacagattccaatctgatctcttcaaaagagttggtgcttca 121


Query: 218 tggagaaaaccaagaggtattgataacagagtcagaagaagattctctggttcccgtgct 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tggagaaaaccaagaggtattgataacagagtcagaagaagattctctggttcccgtgct 181


Query: 278 atgccaagcattggtttcggttctgccaaagccaccaaagatgtctgcccagatggtttc 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atgccaagcattggtttcggttctgccaaagccaccaaagatgtctgcccagatggtttc 241


Query: 338 aaacgtttcgttatcagaaatgttcaagaattagaagttctcttaatgcaaaaccgtaga 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aaacgtttcgttatcagaaatgttcaagaattagaagttctcttaatgcaaaaccgtaga 301


Query: 398 tacgctgccgtcatcttccacggtgt 423
           ||||||||||||||||||||||||||
Sbjct: 302 tacgctgccgtcatcttccacggtgt 327

 Score =  258 bits (130), Expect(2) = 0.0
 Identities = 130/130 (100%)
 Strand = Plus / Plus


Query: 425 ctctgctaaatccagaaaagctattgttgaaagagctgctgaactcaacattaaagtaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctctgctaaatccagaaaagctattgttgaaagagctgctgaactcaacattaaagtaac 387


Query: 485 tactccaaacgccagattaagatcagaagaaagagaataaacagttataaaatgttttta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tactccaaacgccagattaagatcagaagaaagagaataaacagttataaaatgttttta 447


Query: 545 aatatacaac 554
           ||||||||||
Sbjct: 448 aatatacaac 457

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 681,251,280
Number of extensions: 40624747
Number of successful extensions: 3325291
Number of sequences better than 10.0: 1098
Length of query: 587
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 564
Effective length of database: 93,106,754,628
Effective search space: 52512209610192
Effective search space used: 52512209610192
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U15098-1 (Contig-U15098-1Q) /CSM_Contig/Contig-U15098-1Q.Seq.d
         (587 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU125026_1(EU125026|pid:none) Eurythoe complanata ribosomal prot...   131   2e-37
AB374971_1(AB374971|pid:none) Solea senegalensis RPL32 mRNA for ...   122   2e-35
EU116910_1(EU116910|pid:none) Barentsia elongata putative riboso...   125   3e-35
AB307036_1(AB307036|pid:none) Oreochromis niloticus L32 mRNA for...   122   4e-35
BT073465_1(BT073465|pid:none) Oncorhynchus mykiss clone omyk-evn...   121   4e-35
BT074302_1(BT074302|pid:none) Oncorhynchus mykiss clone omyk-evo...   121   4e-35
AY893126_1(AY893126|pid:none) Synthetic construct Homo sapiens c...   120   4e-35
BT043656_1(BT043656|pid:none) Salmo salar clone HM5_1128 ribosom...   121   5e-35
(Q3SZQ6) RecName: Full=60S ribosomal protein L32;  &BC102748_1(B...   120   5e-35
BC086909_1(BC086909|pid:none) Mus musculus ribosomal protein L32...   120   5e-35
AF450502_1(AF450502|pid:none) Epinephelus coioides ribosomal pro...   120   6e-35
BT078360_1(BT078360|pid:none) Lepeophtheirus salmonis Pacific fo...   120   8e-35
BT078325_1(BT078325|pid:none) Lepeophtheirus salmonis Pacific fo...   120   8e-35
BT050053_1(BT050053|pid:none) Salmo salar clone ssal-evd-551-353...   120   8e-35
(Q90YT6) RecName: Full=60S ribosomal protein L32;  &AF401587_1(A...   119   8e-35
BC078535_1(BC078535|pid:none) Xenopus laevis MGC85374 protein, m...   119   1e-34
EU558376_1(EU558376|pid:none) Phoronis muelleri putative 60S rib...   124   1e-34
T25221(T25221) hypothetical protein T24B8.1 - Caenorhabditis ele...   119   2e-34
BT050004_1(BT050004|pid:none) Salmo salar clone ssal-evf-533-260...   119   2e-34
DQ445524_1(DQ445524|pid:none) Graphocephala atropunctata isolate...   120   5e-34
EU124981_1(EU124981|pid:none) Arenicola marina ribosomal protein...   120   9e-34
AY961544_1(AY961544|pid:none) Lysiphlebus testaceipes ribosomal ...   121   1e-33
AB293439_1(AB293439|pid:none) Triops granarius RpL32 mRNA for ri...   118   1e-33
(Q94460) RecName: Full=60S ribosomal protein L32; AltName: Full=...   122   2e-33
EU124619_1(EU124619|pid:none) Lutzomyia longipalpis 60S ribosoma...   120   2e-33
(P04359) RecName: Full=60S ribosomal protein L32; AltName: Full=...   121   3e-33
AY961543_1(AY961543|pid:none) Lysiphlebus testaceipes ribosomal ...   119   3e-33
AY857447_1(AY857447|pid:none) Suberites domuncula L32 mRNA, comp...   123   4e-33
EF639065_1(EF639065|pid:none) Triatoma infestans clone TI-90 60S...   120   9e-33
FN357378_7(FN357378|pid:none) Schistosoma mansoni genome sequenc...   129   1e-32
DQ440260_1(DQ440260|pid:none) Aedes aegypti clone AET-3179 60S r...   125   1e-32
AY769302_1(AY769302|pid:none) Bombyx mori ribosomal protein L32 ...   122   2e-32
(P84323) RecName: Full=60S ribosomal protein L32; AltName: Full=...   118   2e-32
(P84311) RecName: Full=60S ribosomal protein L32; AltName: Full=...   118   2e-32
AF526230_1(AF526230|pid:none) Argopecten irradians isolate iolsa...   116   2e-32
AY814076_1(AY814076|pid:none) Schistosoma japonicum SJCHGC04757 ...   127   4e-32
AM049113_1(AM049113|pid:none) Hister sp. APV-2005 mRNA for ribos...   119   6e-32
(Q8WRF3) RecName: Full=60S ribosomal protein L32; AltName: Full=...   119   6e-32
AB244986_1(AB244986|pid:none) Polypedilum vanderplanki Pv-rpl32 ...   120   1e-31
AM049115_1(AM049115|pid:none) Timarcha balearica mRNA for riboso...   118   2e-31
AM049112_1(AM049112|pid:none) Georissus sp. APV-2005 mRNA for ri...   116   4e-31
(P17932) RecName: Full=Putative 60S ribosomal protein L32';  &I5...   109   6e-31
AM849534_1(AM849534|pid:none) Pomphorhynchus laevis partial mRNA...   112   7e-30
EF634753_1(EF634753|pid:none) Pristionchus sp. 11 RS5228 large s...   108   7e-30
EF634756_1(EF634756|pid:none) Pristionchus sp. 14 RS5230 large s...   107   7e-30
EF634740_1(EF634740|pid:none) Pristionchus pacificus large subun...   108   1e-29
FN316992_1(FN316992|pid:none) Schistosoma japonicum isolate Anhu...   119   2e-29
EF634757_1(EF634757|pid:none) Pristionchus sp. 15 RS5229 large s...   108   2e-29
FJ478147_1(FJ478147|pid:none) Peromyscus polionotus subgriseus r...   120   2e-29
EF634758_1(EF634758|pid:none) Koerneria sp. RS1982 large subunit...   107   2e-29
EF634741_1(EF634741|pid:none) Pristionchus maupasi large subunit...   107   3e-29
DQ864828_1(DQ864828|pid:none) Pfiesteria piscicida clone ppi-5p-...   116   6e-29
AL669972_1(AL669972|pid:none) Mouse DNA sequence from clone RP23...   102   7e-29
EF145555_1(EF145555|pid:none) Populus trichocarpa clone WS01126_...   112   7e-29
AF190579_1(AF190579|pid:none) Ovis aries ribosomal protein L32 m...   120   1e-28
AM920436_152(AM920436|pid:none) Penicillium chrysogenum Wisconsi...   120   1e-28
AM494971_196(AM494971|pid:none) Leishmania braziliensis chromoso...   115   2e-28
(P49211) RecName: Full=60S ribosomal protein L32-1;  &AL110123_7...   108   4e-28
AP008215_1036(AP008215|pid:none) Oryza sativa (japonica cultivar...   108   5e-28
EF146458_1(EF146458|pid:none) Populus trichocarpa clone WS0118_E...   111   5e-28
EU284843_1(EU284843|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   108   6e-28
AF358665_1(AF358665|pid:none) Mercurialis annua ribosomal protei...   108   1e-27
AJ547617_1(AJ547617|pid:none) Crassostrea gigas partial mRNA for...   108   2e-27
AF517865_1(AF517865|pid:none) Griffithsia japonica isolate Gj456...   114   2e-27
EU284838_1(EU284838|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   107   2e-27
EU976534_1(EU976534|pid:none) Zea mays clone 896902 60S ribosoma...   105   2e-27
AY335238_1(AY335238|pid:none) Drosophila sturtevanti clone D.stu...   112   3e-27
AM502253_219(AM502253|pid:none) Leishmania infantum chromosome 35.    114   4e-27
(Q9FHG2) RecName: Full=60S ribosomal protein L32-2;  &AB019223_2...   107   4e-27
EF082636_1(EF082636|pid:none) Picea sitchensis clone WS0282_B24 ...   106   4e-27
DQ122831_1(DQ122831|pid:none) Medicago sativa clone C3 ribosomal...   106   5e-27
EU284839_1(EU284839|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   105   7e-27
EU247158_1(EU247158|pid:none) Lycosa singoriensis clone LSsin648...   122   7e-27
(P79015) RecName: Full=60S ribosomal protein L32-A;  &CU329670_1...   110   1e-26
AC148239_23(AC148239|pid:none) Medicago truncatula clone mth2-5d...   105   2e-26
BC087976_1(BC087976|pid:none) Xenopus tropicalis hypothetical LO...   120   3e-26
CT005260_208(CT005260|pid:none) Leishmania major strain Friedlin...   110   3e-26
DQ673421_1(DQ673421|pid:none) Diaphorina citri putative ribosoma...   119   6e-26
CR382131_1261(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   109   9e-26
AL844508_39(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...   107   9e-26
AM502239_148(AM502239|pid:none) Leishmania infantum chromosome 21.    109   1e-25
CU633900_408(CU633900|pid:none) Podospora anserina genomic DNA c...   117   3e-25
AM270349_31(AM270349|pid:none) Aspergillus niger contig An15c022...   110   6e-25
AY335235_1(AY335235|pid:none) Drosophila capricorni clone D.cap1...   114   2e-24
AY335237_1(AY335237|pid:none) Drosophila saltans clone D.sal12 r...   114   2e-24
FN392321_1085(FN392321|pid:none) Pichia pastoris GS115 chromosom...   103   3e-24
(Q7RXY1) RecName: Full=60S ribosomal protein L32;                     113   3e-24
BT049236_1(BT049236|pid:none) Salmo salar clone ssal-rgb2-575-17...   113   3e-24
AK340002_1(AK340002|pid:none) Acyrthosiphon pisum ACYPI000074 mR...   113   4e-24
CU928167_244(CU928167|pid:none) Kluyveromyces thermotolerans str...   103   5e-24
CP000584_129(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    90   2e-23
AF241825_1(AF241825|pid:none) Leishmania donovani 60S ribosomal ...   103   2e-23
R5FF49(A02830)ribosomal protein L32 - fruit fly (Drosophila mela...   109   3e-23
X00848_1(X00848|pid:none) Drosophila gene for ribosomal protein ...   109   4e-23
CR940353_81(CR940353|pid:none) Theileria annulata strain Ankara ...    97   5e-23
EF585824_1(EF585824|pid:none) Sonneratia alba isolate Sonn332A_1...   100   5e-23
AY539747_1(AY539747|pid:none) Culex pipiens quinquefasciatus rib...   109   6e-23
U97380_1(U97380|pid:none) Schizosaccharomyces pombe 60S ribosoma...   108   8e-23
CR382138_540(CR382138|pid:none) Debaryomyces hansenii strain CBS...   101   9e-23
EF188258_11(EF188258|pid:none) Cucumis melo clone BAC 1-21-10 ch...    90   1e-22
BT036791_1(BT036791|pid:none) Zea mays full-length cDNA clone ZM...   107   3e-22
EU951973_1(EU951973|pid:none) Zea mays clone 1064114 60S ribosom...   106   4e-22
AJ833644_1(AJ833644|pid:none) Oryza sativa (indica cultivar-grou...   106   5e-22
AK120524_1(AK120524|pid:none) Oryza sativa Japonica Group cDNA c...   106   5e-22
BT065983_1(BT065983|pid:none) Zea mays full-length cDNA clone ZM...   106   5e-22
CP000499_139(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    98   5e-22
AK063752_1(AK063752|pid:none) Oryza sativa Japonica Group cDNA c...   105   7e-22
(Q751I7) RecName: Full=60S ribosomal protein L32;  &AE016820_90(...    97   7e-22
AB118976_1(AB118976|pid:none) Lucilia sericata rp49 mRNA for rib...   105   1e-21
CU928174_172(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    99   1e-21
FM992693_149(FM992693|pid:none) Candida dubliniensis CD36 chromo...    96   6e-21
CR382125_297(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    92   3e-19
AB074534_1(AB074534|pid:none) Sarcophaga crassipalpis RpL32 mRNA...    97   3e-19
(Q6FS03) RecName: Full=60S ribosomal protein L32;  &CR380954_188...    96   7e-19
AB048205_1(AB048205|pid:none) Bombyx mori rp49 mRNA for ribosoma...    96   9e-19
AY943310_1(AY943310|pid:none) Wyeomyia smithii ribosomal protein...    72   1e-17
DQ296005_1(DQ296005|pid:none) Antheraea pernyi ribosomal protein...    91   2e-17
EU952972_1(EU952972|pid:none) Zea mays clone 1372260 unknown mRNA.     84   3e-15
Z68338_5(Z68338|pid:none) Caenorhabditis elegans Cosmid T24B8, c...    54   5e-15
EF123124_1(EF123124|pid:none) Saccharomyces cerevisiae strain BY...    78   2e-13
EU082994_1(EU082994|pid:none) Lutzomyia intermedia isolate IAFrp...    77   3e-13
AJ965641_1(AJ965641|pid:none) Nyctotherus ovalis partial mRNA fo...    75   1e-12
AY958160_1(AY958160|pid:none) Hydractinia echinata 60S ribosomal...    74   3e-12
AF083031_150(AF083031|pid:none) Guillardia theta nucleomorph chr...    74   4e-12
EU958671_1(EU958671|pid:none) Zea mays clone 1709094 unknown mRNA.     70   6e-11
EF579953_1(EF579953|pid:none) Oncorhynchus masou ribosomal prote...    57   6e-11
(Q8PV33) RecName: Full=50S ribosomal protein L32e;                     63   5e-09
AE008384_2141(AE008384|pid:none) Methanosarcina mazei strain Goe...    63   5e-09
(Q8TRT0) RecName: Full=50S ribosomal protein L32e;                     62   2e-08
(Q8TW13) RecName: Full=50S ribosomal protein L32e;  &AE009439_12...    60   6e-08
(O59435) RecName: Full=50S ribosomal protein L32e;  &BA000001_18...    59   7e-08
CP000077_542(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63...    59   1e-07
CP000678_744(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    59   1e-07
CP001398_1986(CP001398|pid:none) Thermococcus gammatolerans EJ3,...    58   2e-07
EU016638_39(EU016638|pid:none) Uncultured Group I marine crenarc...    58   2e-07
(O26128) RecName: Full=50S ribosomal protein L32e;  &AE000666_20...    58   2e-07
(Q9UX90) RecName: Full=50S ribosomal protein L32e;  &AE006641_63...    57   4e-07
(Q5JJG5) RecName: Full=50S ribosomal protein L32e;  &AP006878_15...    57   4e-07
CP001399_1385(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    55   1e-06
CP000102_859(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    55   2e-06
(B6YSN1) RecName: Full=50S ribosomal protein L32e;  &CP000855_85...    54   2e-06
(Q8ZVV9) RecName: Full=50S ribosomal protein L32e;  &AE009441_14...    54   2e-06
EU016608_30(EU016608|pid:none) Uncultured marine microorganism H...    54   3e-06
CP000743_1384(CP000743|pid:none) Methanococcus aeolicus Nankai-3...    53   5e-06
(Q9HIS4) RecName: Full=50S ribosomal protein L32e;  &AL445067_25...    52   9e-06
(O28371) RecName: Full=50S ribosomal protein L32e;  &AE000782_18...    51   3e-05
CP000968_1552(CP000968|pid:none) Candidatus Korarchaeum cryptofi...    50   3e-05
CP000559_97(CP000559|pid:none) Methanocorpusculum labreanum Z, c...    49   4e-05
(P12736) RecName: Full=50S ribosomal protein L32e; AltName: Full...    50   6e-05
CP000504_1830(CP000504|pid:none) Pyrobaculum islandicum DSM 4184...    49   8e-05
CP000682_108(CP000682|pid:none) Metallosphaera sedula DSM 5348, ...    48   2e-04
AM180088_1893(AM180088|pid:none) Haloquadratum walsbyi DSM 16790...    48   2e-04
CP000780_543(CP000780|pid:none) Candidatus Methanoregula boonei ...    44   3e-04
CP000852_12(CP000852|pid:none) Caldivirga maquilingensis IC-167,...    47   4e-04
CP000493_1266(CP000493|pid:none) Hyperthermus butylicus DSM 5456...    47   5e-04
CP000660_1938(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135...    46   9e-04
CP000562_579(CP000562|pid:none) Methanoculleus marisnigri JR1, c...    46   9e-04
(A6UQ61) RecName: Full=50S ribosomal protein L32e;  &(P14549) Re...    45   0.001
(Q9YF92) RecName: Full=50S ribosomal protein L32e;  &BA000002_26...    45   0.002
DQ156348_22(DQ156348|pid:none) Uncultured marine group II euryar...    44   0.002
(A4FWA4) RecName: Full=50S ribosomal protein L32e;  &CP000609_16...    44   0.002
(Q74MV8) RecName: Full=50S ribosomal protein L32e;  &AE017199_51...    44   0.004
CP000561_172(CP000561|pid:none) Pyrobaculum calidifontis JCM 115...    44   0.004
(Q9HPB7) RecName: Full=50S ribosomal protein L32e; AltName: Full...    42   0.009
BT084505_1(BT084505|pid:none) Zea mays full-length cDNA clone ZM...    40   0.036
BT066829_1(BT066829|pid:none) Zea mays full-length cDNA clone ZM...    40   0.036
EU686643_1(EU686643|pid:none) Uncultured marine group II euryarc...    39   0.10
EU686610_28(EU686610|pid:none) Uncultured marine group II euryar...    39   0.14
AF084204_1(AF084204|pid:none) Medicago sativa clone MS62 unknown...    38   0.23
EU686639_19(EU686639|pid:none) Uncultured marine group II euryar...    37   0.30
CP000584_128(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    35   2.0
(Q2LCP5) RecName: Full=NADH-ubiquinone oxidoreductase 75 kDa sub...    34   2.6
AC005819_1(AC005819|pid:none) Arabidopsis thaliana chromosome 2 ...    34   2.6
FN357555_14(FN357555|pid:none) Schistosoma mansoni genome sequen...    33   4.4
AY814635_1(AY814635|pid:none) Schistosoma japonicum SJCHGC07521 ...    33   5.7

>EU125026_1(EU125026|pid:none) Eurythoe complanata ribosomal protein
           rpl32 mRNA, complete cds.
          Length = 134

 Score =  131 bits (330), Expect(2) = 2e-37
 Identities = 61/98 (62%), Positives = 78/98 (79%)
 Frame = +2

Query: 131 PINRTKIVKKKTTKFNRFQSDLFKRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKA 310
           P+ + KIVKK+T KF R QSD +K++  +WRKP+GIDNRVRRRF G   MPSIG+GSAK
Sbjct: 5   PLVKHKIVKKRTKKFIRHQSDRYKKIRTNWRKPKGIDNRVRRRFKGQFLMPSIGYGSAKK 64

Query: 311 TKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGV 424
           T+ VCPDGFK+F++ NV+ELEVL+MQNR ++A I   V
Sbjct: 65  TRHVCPDGFKKFLVHNVKELEVLMMQNRTFSAEISSSV 102

 Score = 47.0 bits (110), Expect(2) = 2e-37
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +3

Query: 414 STVCSAKSRKAIVERAAELNIKVTTPNARLRSEERE 521
           S+  S+K RKAIVERA +L IKVT P ARLRSEE E
Sbjct: 99  SSSVSSKKRKAIVERAQQLAIKVTNPFARLRSEENE 134

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 785,374,016
Number of extensions: 14324267
Number of successful extensions: 40716
Number of sequences better than 10.0: 175
Number of HSP's gapped: 40684
Number of HSP's successfully gapped: 281
Length of query: 195
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 73
Effective length of database: 656,320,666
Effective search space: 47911408618
Effective search space used: 47911408618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.47  gvh: 0.26  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.09
 nuc: 0.15  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U15098-1 is nuc
VS (DIR, S) 14
VH (FL, L) 0
VF (FL, S) 5
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 5
FC-IC (SUB) 0