| Contig-U02912-1 |
| Contig ID |
Contig-U02912-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1341 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
1415923 |
| End point |
1414599 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
4 |
| Number of EST |
8 |
| Link to clone list |
U02912 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 9 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 5.24 |
| Homology vs DNA |
Query= Contig-U02912-1 (Contig-U02912-1Q) /CSM_Contig/Contig-U02912-1Q.Seq.d
(1341 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ402027) Dictyostelium discoideum cDNA clone:dds20p01, 3' ... 1291 0.0 2
(AU038909) Dictyostelium discoideum slug cDNA, clone SSM128. 1172 0.0 1
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 632 0.0 6
(BJ401277) Dictyostelium discoideum cDNA clone:dds22a19, 3' ... 1011 0.0 1
(BJ389825) Dictyostelium discoideum cDNA clone:dds20p01, 5' ... 926 0.0 2
(BJ390520) Dictyostelium discoideum cDNA clone:dds22a19, 5' ... 916 0.0 2
(BJ345143) Dictyostelium discoideum cDNA clone:dda21b23, 3' ... 930 0.0 1
(BJ327783) Dictyostelium discoideum cDNA clone:dda21b23, 5' ... 807 0.0 2
(AU074807) Dictyostelium discoideum slug cDNA, clone SSM128. 230 1e-55 1
(BJ413238) Dictyostelium discoideum cDNA clone:ddv14c21, 5' ... 56 0.004 1
(ER803699) PPTAD26TF Solanum tuberosum RHPOTKEY BAC ends Sol... 54 0.014 1
(BJ416837) Dictyostelium discoideum cDNA clone:ddv27a16, 5' ... 54 0.014 1
(BJ416225) Dictyostelium discoideum cDNA clone:ddv25j09, 5' ... 54 0.014 1
(BJ392482) Dictyostelium discoideum cDNA clone:dds27f23, 5' ... 42 0.14 3
(BJ416175) Dictyostelium discoideum cDNA clone:ddv25o01, 5' ... 50 0.22 1
(BJ415925) Dictyostelium discoideum cDNA clone:ddv24n06, 5' ... 50 0.22 1
(BJ415684) Dictyostelium discoideum cDNA clone:ddv23j07, 5' ... 50 0.22 1
(BJ396743) Dictyostelium discoideum cDNA clone:dds43d22, 5' ... 36 0.23 3
(BJ392492) Dictyostelium discoideum cDNA clone:dds27h24, 5' ... 36 0.33 3
(BJ389583) Dictyostelium discoideum cDNA clone:dds19e08, 5' ... 42 0.38 3
(BJ363217) Dictyostelium discoideum cDNA clone:ddc25i15, 5' ... 46 0.66 2
(BJ362522) Dictyostelium discoideum cDNA clone:ddc22p04, 5' ... 38 0.73 2
(AC073521) Homo sapiens BAC clone RP11-806J6 from 7, complet... 34 0.76 7
(BJ335134) Dictyostelium discoideum cDNA clone:dda49f05, 5' ... 40 0.87 2
(CU207308) Mouse DNA sequence from clone DN-144H13 on chromo... 48 0.89 1
(AL604065) Mouse DNA sequence from clone RP23-20M18 on chrom... 48 0.89 1
(AC027032) Arabidopsis thaliana chromosome 1 BAC F10O5 genom... 48 0.89 1
(CL484719) SAIL_401_C04.v1 SAIL Collection Arabidopsis thali... 48 0.89 1
(BZ763940) SALK_122811.52.00.x Arabidopsis thaliana TDNA ins... 48 0.89 1
(BH903752) SALK_103300.47.90.x Arabidopsis thaliana TDNA ins... 48 0.89 1
(CJ492520) Macaca fascicularis mRNA, clone: QtsA-20504, 5' e... 48 0.89 1
(CJ441383) Macaca fascicularis mRNA, clone: QccE-18850, 5' e... 48 0.89 1
(BJ416439) Dictyostelium discoideum cDNA clone:ddv26n10, 5' ... 48 0.89 1
(BJ413789) Dictyostelium discoideum cDNA clone:ddv16p23, 5' ... 48 0.89 1
(BJ413589) Dictyostelium discoideum cDNA clone:ddv16e12, 5' ... 48 0.89 1
(BJ364474) Dictyostelium discoideum cDNA clone:ddc31h23, 5' ... 40 0.92 2
(ER390208) 1094428845702 Global-Ocean-Sampling_GS-34-01-01-1... 36 1.0 2
(CJ481522) Macaca fascicularis mRNA, clone: QtrA-17214, 5' e... 38 1.1 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 1.1 7
(BJ369850) Dictyostelium discoideum cDNA clone:ddc52b11, 5' ... 34 1.4 3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 1.4 5
(AC146126) Pan troglodytes BAC clone RP43-23E20 from chromos... 34 1.4 8
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 1.5 5
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 44 1.6 7
(EU306659) Medicago truncatula zinc finger protein, GH1 prot... 34 1.7 2
(AL356136) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 34 1.8 2
(BX088651) Human DNA sequence from clone RP11-475I24 on chro... 34 1.8 2
(AL590399) Human DNA sequence from clone RP11-111F5 on chrom... 34 1.8 2
(BX088717) Human DNA sequence from clone RP11-624E13 on chro... 34 1.8 2
(AC026515) Homo sapiens chromosome 15 clone RP11-111G14 map ... 34 1.8 2
(AC068367) Homo sapiens chromosome 3 clone RP11-15O3 map 3, ... 34 1.8 2
(CR788307) Human DNA sequence from clone RP11-384N15 on chro... 34 1.8 2
(BX284677) Human DNA sequence from clone RP11-315E10 on chro... 34 1.8 2
(BX664615) Human DNA sequence from clone RP11-104G3 on chrom... 34 1.8 2
(BX005266) Human DNA sequence from clone RP11-211N8 on chrom... 34 1.8 2
(CR769767) Human DNA sequence from clone RP11-204M4 on chrom... 34 1.8 2
(AC126010) Medicago truncatula clone mth2-20e4, complete seq... 34 1.8 2
(BJ387742) Dictyostelium discoideum cDNA clone:dds4h18, 5' e... 44 1.9 2
(BJ391387) Dictyostelium discoideum cDNA clone:dds13i15, 5' ... 44 1.9 2
(AC023548) Homo sapiens chromosome 5 clone RP11-28B11 map 5,... 44 2.0 4
(BX005289) Zebrafish DNA sequence from clone DKEY-68I6 in li... 42 2.2 4
(CJ462079) Macaca fascicularis mRNA, clone: QmoA-15124, 5' e... 34 2.3 3
(CJ447968) Macaca fascicularis mRNA, clone: QflA-13323, 5' e... 32 2.3 4
(BJ327683) Dictyostelium discoideum cDNA clone:dda21k07, 5' ... 40 2.3 2
(BJ390582) Dictyostelium discoideum cDNA clone:dds22o24, 5' ... 44 2.5 2
(AC206454) Pongo abelii BAC clone CH276-178M24 from chromoso... 34 2.5 7
(BJ370369) Dictyostelium discoideum cDNA clone:ddc53j22, 5' ... 38 2.6 2
(BJ326702) Dictyostelium discoideum cDNA clone:dda17n15, 5' ... 44 2.6 2
(BJ396772) Dictyostelium discoideum cDNA clone:dds43k24, 5' ... 32 3.0 3
(BZ400833) EINAJ92TF EI_10_12_KB Entamoeba invadens genomic ... 38 3.0 2
(BJ327743) Dictyostelium discoideum cDNA clone:dda21i13, 5' ... 44 3.0 2
(EG414900) SAAH-aab26g01.b1 Agen 0058 Schmidtea mediterranea... 42 3.3 2
(BJ387640) Dictyostelium discoideum cDNA clone:dds3o20, 5' e... 40 3.4 2
(BJ390435) Dictyostelium discoideum cDNA clone:dds22l12, 5' ... 34 3.4 2
(AY885234) Glycine max stearoyl-acyl carrier protein desatur... 46 3.5 1
(AY885233) Glycine max stearoyl-acyl carrier protein desatur... 46 3.5 1
(CU463322) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.5 1
(AQ735520) HS_2015_A2_A11_T7C CIT Approved Human Genomic Spe... 46 3.5 1
(CT647996) Danio rerio EST, clone ZF_mu_112o04 5'. 46 3.5 1
(CJ468774) Macaca fascicularis mRNA, clone: QnpA-18706, 5' e... 46 3.5 1
(CJ449799) Macaca fascicularis mRNA, clone: QflA-15331, 5' e... 46 3.5 1
(CI026954) Oryza sativa Japonica Group cDNA, clone: 009-M035... 46 3.5 1
(CD165529) ML1-0096P-A228-H12-U.B ML1-0096 Schistosoma manso... 46 3.5 1
(BJ392498) Dictyostelium discoideum cDNA clone:dds27j20, 5' ... 46 3.5 1
(BJ389134) Dictyostelium discoideum cDNA clone:dds17j18, 5' ... 46 3.5 1
(BJ388727) Dictyostelium discoideum cDNA clone:dds16b05, 5' ... 46 3.5 1
(BJ362924) Dictyostelium discoideum cDNA clone:ddc24i02, 5' ... 46 3.5 1
(BJ360588) Dictyostelium discoideum cDNA clone:ddc6i23, 5' e... 46 3.5 1
(BJ336856) Dictyostelium discoideum cDNA clone:dda55k12, 5' ... 46 3.5 1
(FK690305) CCBU392.b1 CCBU Cochliobolus heterostrophus, Chet... 46 3.5 1
(BJ394116) Dictyostelium discoideum cDNA clone:dds33i20, 5' ... 32 3.5 3
(BJ327568) Dictyostelium discoideum cDNA clone:dda20m24, 5' ... 36 3.7 2
(ER457947) 1092963876069 Global-Ocean-Sampling_GS-35-01-01-1... 42 3.7 2
(BJ337233) Dictyostelium discoideum cDNA clone:dda56p18, 5' ... 32 3.8 3
(CJ454484) Macaca fascicularis mRNA, clone: QflA-20227, 5' e... 38 3.8 2
(BJ387745) Dictyostelium discoideum cDNA clone:dds4k13, 5' e... 42 3.9 2
(BJ394056) Dictyostelium discoideum cDNA clone:dds33k14, 5' ... 32 4.0 3
(EJ289672) 1095370011545 Global-Ocean-Sampling_GS-27-01-01-1... 42 4.0 2
(BJ370327) Dictyostelium discoideum cDNA clone:ddc53a22, 5' ... 32 4.2 3
(BJ396730) Dictyostelium discoideum cDNA clone:dds43p17, 5' ... 32 4.4 3
(BJ336891) Dictyostelium discoideum cDNA clone:dda55d15, 5' ... 32 4.5 3
(BJ370244) Dictyostelium discoideum cDNA clone:ddc53n07, 5' ... 30 4.5 3
(BJ326391) Dictyostelium discoideum cDNA clone:dda16g07, 5' ... 32 5.1 3
(BJ369964) Dictyostelium discoideum cDNA clone:ddc52l14, 5' ... 32 5.3 3
(CU151855) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 5.6 5
(BJ338378) Dictyostelium discoideum cDNA clone:dda61c09, 5' ... 40 5.6 2
(BJ363381) Dictyostelium discoideum cDNA clone:ddc26i10, 5' ... 40 6.0 2
(CU856004) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 6.4 2
(AC148255) Callithrix jacchus clone CH259-113A4, WORKING DRA... 34 6.5 2
(AC162721) Callithrix jacchus clone CH259-305H22, WORKING DR... 34 6.5 2
(BJ386825) Dictyostelium discoideum cDNA clone:dds10i24, 5' ... 38 6.7 2
(BJ406765) Dictyostelium discoideum cDNA clone:dds36j07, 3' ... 28 7.2 4
(AC170799) Medicago truncatula clone mth2-194j10, complete s... 34 7.5 6
(BP612831) Arabidopsis thaliana cDNA clone:RAFL16-90-P19, 3'... 38 7.6 2
(BJ325690) Dictyostelium discoideum cDNA clone:dda1c02, 5' e... 42 7.7 2
(BP598812) Arabidopsis thaliana cDNA clone:RAFL16-04-L19, 3'... 38 8.1 2
(CJ459197) Macaca fascicularis mRNA, clone: QmoA-11349, 5' e... 32 8.1 3
(AZ182166) SP_0188_B2_F07_SP6E Strongylocentrotus purpuratus... 36 8.2 2
(BJ415998) Dictyostelium discoideum cDNA clone:ddv24a17, 5' ... 36 8.5 2
(FD295772) CBFA34172.b1 CBFA: Normalized cDNA library made f... 40 8.8 2
(BJ414126) Dictyostelium discoideum cDNA clone:ddv18l01, 5' ... 40 8.9 2
(BJ329133) Dictyostelium discoideum cDNA clone:dda30k24, 5' ... 42 9.8 2
>(BJ402027) Dictyostelium discoideum cDNA clone:dds20p01, 3' end,
single read.
Length = 671
Score = 1291 bits (651), Expect(2) = 0.0
Identities = 651/651 (100%)
Strand = Plus / Minus
Query: 587 attaatggtgcttgttcaaatagatatgattgtaatgtaaatcttgtttgttcatatcaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 attaatggtgcttgttcaaatagatatgattgtaatgtaaatcttgtttgttcatatcaa 612
Query: 647 tctgatagttccacttcaaaaaacttgtcaagaaccatggactaaaaaattaaatgaaaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tctgatagttccacttcaaaaaacttgtcaagaaccatggactaaaaaattaaatgaaaa 552
Query: 707 atgtgataactctcctgatgctcaaagaattccatttttctatgattgtgatattggttc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atgtgataactctcctgatgctcaaagaattccatttttctatgattgtgatattggttc 492
Query: 767 aaatttatattgtggtagtcaaggaaaatgtgttttaaatacaccaagtggaacatgttc 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaatttatattgtggtagtcaaggaaaatgtgttttaaatacaccaagtggaacatgttc 432
Query: 827 acaatgttcaaattcaacagcatgtaaaggttatagtgatagttgcatttgtaataataa 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acaatgttcaaattcaacagcatgtaaaggttatagtgatagttgcatttgtaataataa 372
Query: 887 taatatcgcaaaagatacaattaatgcaaacaaagttggaatttgtgttccagaggtttt 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taatatcgcaaaagatacaattaatgcaaacaaagttggaatttgtgttccagaggtttt 312
Query: 947 cattgatagttcatgtaaatcaacatttggtgatttaattcaatgttgtgcaacctattc 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cattgatagttcatgtaaatcaacatttggtgatttaattcaatgttgtgcaacctattc 252
Query: 1007 atgtccaatgaatcaacaactattattcaatcaagattcgtgtgcattcaaaaattgtca 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgtccaatgaatcaacaactattattcaatcaagattcgtgtgcattcaaaaattgtca 192
Query: 1067 acaatatgtttgtaaaatgagtaactgtttcagagcaactggtgcttacaatatgttaaa 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 acaatatgtttgtaaaatgagtaactgtttcagagcaactggtgcttacaatatgttaaa 132
Query: 1127 tttggctcaaaccgcttgtggttcaacttattcattaccaaaagattatacaaaagaatg 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tttggctcaaaccgcttgtggttcaacttattcattaccaaaagattatacaaaagaatg 72
Query: 1187 tccattcgaattaccaaaacaatcagatagaccaaataattcatcatcaat 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tccattcgaattaccaaaacaatcagatagaccaaataattcatcatcaat 21
Score = 40.1 bits (20), Expect(2) = 0.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1239 ataccttcaatatttttcgc 1258
||||||||||||||||||||
Sbjct: 20 ataccttcaatatttttcgc 1
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,576,955,479
Number of extensions: 100321213
Number of successful extensions: 10928577
Number of sequences better than 10.0: 145
Length of query: 1341
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1317
Effective length of database: 99,340,224,878
Effective search space: 130831076164326
Effective search space used: 130831076164326
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.21 |
| Homology vs Protein |
Query= Contig-U02912-1 (Contig-U02912-1Q) /CSM_Contig/Contig-U02912-1Q.Seq.d
(1341 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC115607_13(AC115607|pid:none) Dictyostelium discoideum chromoso... 374 e-102
AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m... 54 7e-13
AC115680_25(AC115680|pid:none) Dictyostelium discoideum chromoso... 54 7e-10
CP000251_2747(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 57 1e-06
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 42 3e-06
E88571(E88571)protein C05B5.5 [imported] - Caenorhabditis elegans 46 7e-06
S43572(S43572)C05B5.5 protein (clone C05B5) - Caenorhabditis ele... 46 7e-06
CP000769_2725(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 50 1e-04
AM746676_9366(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 50 2e-04
CP001131_2828(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 49 3e-04
AJ133651_1(AJ133651|pid:none) Trichoderma harzianum cmp1 gene. 46 3e-04
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 49 5e-04
AF483021_1(AF483021|pid:none) Boltenia villosa Ci-meta1-like pro... 48 7e-04
T29359(T29359)hypothetical protein R05G6.9 - Caenorhabditis eleg... 48 0.001
AP007166_484(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 47 0.001
AJ507288_1(AJ507288|pid:none) Cupiennius salei partial mRNA for ... 47 0.001
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 40 0.001
U58746_6(U58746|pid:none) Caenorhabditis elegans cosmid R05G6, c... 46 0.003
(Q52085) RecName: Full=Cell-cell adhesion glycoprotein 64; ... 46 0.003
AC116977_110(AC116977|pid:none) Dictyostelium discoideum chromos... 46 0.003
AM055942_182(AM055942|pid:none) Toxoplasma gondii RH, genomic DN... 46 0.003
DQ917572_1(DQ917572|pid:none) Parhyale hawaiensis notch protein ... 45 0.008
AC115680_32(AC115680|pid:none) Dictyostelium discoideum chromoso... 45 0.008
D87558_1(D87558|pid:none) Gallus gallus mRNA for C-Serrate-2, pa... 45 0.008
BX510920_1(BX510920|pid:none) Zebrafish DNA sequence from clone ... 44 0.010
AB159785_1(AB159785|pid:none) Aspergillus oryzae csnC gene for c... 44 0.010
(Q61555) RecName: Full=Fibrillin-2; Flags: Precursor; &A57278(A... 44 0.013
CP000769_2860(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 44 0.017
AY123118_1(AY123118|pid:none) Griffithsia japonica growth factor... 44 0.017
T27686(T27686)hypothetical protein ZK1067.7 - Caenorhabditis ele... 44 0.017
AB074973_1(AB074973|pid:none) Plasmodium ovale Pos28-1 gene for ... 43 0.023
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 43 0.030
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c... 43 0.030
AK220196_1(AK220196|pid:none) Mus musculus mRNA for mKIAA4226 pr... 43 0.030
AF135060_1(AF135060|pid:none) Rattus norvegicus fibrillin-2 mRNA... 43 0.030
AF016439_2(AF016439|pid:none) Caenorhabditis elegans cosmid R02F... 43 0.030
DQ812528_1(DQ812528|pid:none) Spironucleus barkhanus isolate Sp1... 35 0.036
Z70038_10(Z70038|pid:none) Caenorhabditis elegans Cosmid ZK1067,... 38 0.037
AM920433_230(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 42 0.039
U20217_1(U20217|pid:none) Mus musculus fibrillin-2 mRNA, partial... 42 0.039
AM746676_4815(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.050
BC149245_1(BC149245|pid:none) Bos taurus similar to CG33196-PB, ... 42 0.050
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 42 0.050
(Q25464) RecName: Full=Adhesive plaque matrix protein 2; AltName... 42 0.066
(O75690) RecName: Full=Keratin-associated protein 5-8; AltName: ... 42 0.066
AJ006692_1(AJ006692|pid:none) Homo sapiens UHS KerB gene. 42 0.066
AB051632_1(AB051632|pid:none) Plasmodium ovale gene for ookinete... 42 0.066
S40992(S40992)hypothetical protein K04H4.2 - Caenorhabditis eleg... 41 0.086
Z27078_4(Z27078|pid:none) Caenorhabditis elegans Cosmid K04H4, c... 41 0.086
Z27078_3(Z27078|pid:none) Caenorhabditis elegans Cosmid K04H4, c... 41 0.086
AB201466_1(AB201466|pid:none) Holotrichia diomphalia EGF-like mR... 39 0.11
S28291(S28291)hypothetical protein ZC84.1 - Caenorhabditis elegans 41 0.11
U03272_1(U03272|pid:none) Human fibrillin-2 mRNA, complete cds. 41 0.11
AB209735_1(AB209735|pid:none) Homo sapiens mRNA for fibrillin 2 ... 41 0.11
CP000769_3416(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 41 0.11
A54105(A54105;S17063;S31101)fibrillin-2 precursor - human 41 0.11
(Q6L8G4) RecName: Full=Keratin-associated protein 5-11; AltName:... 40 0.15
AM746676_392(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 40 0.19
A23475(A23475)G surface protein - Paramecium primaurelia 31 0.20
(Q04721) RecName: Full=Neurogenic locus notch homolog protein 2;... 40 0.25
AF308601_1(AF308601|pid:none) Homo sapiens NOTCH 2 (N2) mRNA, co... 40 0.25
AL035436_2(AL035436|pid:none) Drosophila melanogaster cosmid clo... 40 0.25
AX357059_1(AX357059|pid:none) Sequence 21 from Patent EP1175909.... 40 0.25
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 40 0.25
FJ222591_1(FJ222591|pid:none) Periplaneta americana Notch protei... 40 0.25
M16152_1(M16152|pid:none) Drosophila melanogaster Notch growth f... 40 0.25
AM746676_8749(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 39 0.33
T23682(T23682) hypothetical protein M02G9.3 - Caenorhabditis ele... 39 0.33
M61131_1(M61131|pid:none) T.brucei acidic integral membrane prot... 39 0.33
AM746676_9204(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 39 0.43
Y12539_1(Y12539|pid:none) Branchiostoma floridae mRNA for putati... 39 0.43
AF097183_1(AF097183|pid:none) Cryptosporidium parvum HC-10 gene,... 39 0.43
AM746676_3301(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 39 0.43
AB218869_1(AB218869|pid:none) Rhyparobia maderae LpR mRNA for Li... 39 0.43
AY034179_1(AY034179|pid:none) Littorina littorea putative metall... 39 0.43
AC004663_1(AC004663|pid:none) Homo sapiens chromosome 19, cosmid... 39 0.43
AB209447_1(AB209447|pid:none) Homo sapiens mRNA for Notch homolo... 39 0.43
BC123140_1(BC123140|pid:none) Xenopus laevis hypothetical protei... 39 0.43
X56160_1(X56160|pid:none) Human mRNA for tenascin. 39 0.43
DQ310728_1(DQ310728|pid:none) Xenopus laevis fibrillin mRNA, par... 39 0.43
EF066645_1(EF066645|pid:none) Trichinella spiralis clone T42B12 ... 38 0.53
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 39 0.56
AY845260_1(AY845260|pid:none) Mytilus edulis clone 2 foot protei... 39 0.56
(P41951) RecName: Full=Prion-like-(Q/N-rich) domain-bearing prot... 39 0.56
AF016445_6(AF016445|pid:none) Caenorhabditis elegans cosmid T05B... 39 0.56
AB073427_1(AB073427|pid:none) Ciona savignyi mRNA for Delta, com... 39 0.56
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 39 0.56
AM746676_4982(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 39 0.56
(Q6L8G8) RecName: Full=Keratin-associated protein 5-7; AltName: ... 38 0.73
(Q28660) RecName: Full=Disintegrin and metalloproteinase domain-... 38 0.73
U28735_9(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, c... 38 0.73
BC140725_1(BC140725|pid:none) Homo sapiens keratin associated pr... 38 0.73
AY751775_1(AY751775|pid:none) Xenopus laevis alpha2-macroglobuli... 38 0.73
U28735_10(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, ... 38 0.73
A56136(A56136)jagged protein precursor - rat 38 0.95
AM910994_309(AM910994|pid:none) Plasmodium knowlesi strain H chr... 38 0.95
BC104355_1(BC104355|pid:none) Mus musculus keratin associated pr... 38 0.95
CP001325_744(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 38 0.95
AC024830_9(AC024830|pid:none) Caenorhabditis elegans cosmid Y55F... 38 0.95
CP000113_5275(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 38 0.95
AF010137_1(AF010137|pid:none) Mus musculus Jagged 2 protein mRNA... 38 0.95
EU072824_1(EU072824|pid:none) Drosophila americana isolate IR04.... 38 0.95
(Q9QXX0) RecName: Full=Protein jagged-1; Short=Jagged1;... 38 0.95
BC162468_1(BC162468|pid:none) Danio rerio jagged 1a, mRNA (cDNA ... 37 1.2
CU138540_8(CU138540|pid:none) Zebrafish DNA sequence from clone ... 37 1.2
EF125736_1(EF125736|pid:none) Nyctotherus ovalis hypothetical pr... 37 1.2
EU975774_1(EU975774|pid:none) Zea mays clone 500142 hypothetical... 37 1.2
BT049805_1(BT049805|pid:none) Salmo salar clone ssal-sjb-015-270... 37 1.2
EU072820_1(EU072820|pid:none) Drosophila americana isolate IR04.... 37 1.2
AB232525_1(AB232525|pid:none) Sus scrofa DKK3 mRNA for dickkopf ... 37 1.2
AF483064_1(AF483064|pid:none) Boltenia villosa EGF repeat-contai... 37 1.6
EU441156_1(EU441156|pid:none) Patiria miniata delta protein mRNA... 37 1.6
FJ039903_1(FJ039903|pid:none) Hordeum vulgare DEP1 (DEP1) mRNA, ... 37 1.6
AF308602_1(AF308602|pid:none) Homo sapiens NOTCH 1 (N1) mRNA, co... 37 1.6
(P97607) RecName: Full=Protein jagged-2; Short=Jagged2;... 37 1.6
BT037952_1(BT037952|pid:none) Zea mays full-length cDNA clone ZM... 37 1.6
AE017351_299(AE017351|pid:none) Cryptococcus neoformans var. neo... 37 1.6
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso... 37 2.1
BC120950_1(BC120950|pid:none) Homo sapiens keratin associated pr... 37 2.1
AL022270_3(AL022270|pid:none) Caenorhabditis elegans Cosmid C26G... 37 2.1
U13646_1(U13646|pid:none) Caenorhabditis elegans cosmid ZK783, c... 37 2.1
AJ628246_1(AJ628246|pid:none) Homo sapiens partial mRNA for kera... 37 2.1
(Q6L8H2) RecName: Full=Keratin-associated protein 5-3; AltName: ... 37 2.1
(P60370) RecName: Full=Keratin-associated protein 10-5; AltName:... 37 2.1
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 37 2.1
AM403063_1(AM403063|pid:none) Blattella germanica mRNA for lipop... 37 2.1
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 37 2.1
AB076352_1(AB076352|pid:none) Homo sapiens KRTAP18.5 mRNA for ke... 37 2.1
BT048072_1(BT048072|pid:none) Salmo salar clone ssal-evf-568-267... 37 2.1
AM403064_1(AM403064|pid:none) Blattella germanica mRNA for lipop... 37 2.1
AF056116_15(AF056116|pid:none) Fugu rubripes serine/threonine ki... 37 2.1
AF224491_1(AF224491|pid:none) Halocynthia roretzi complement fac... 37 2.1
(Q6L8H1) RecName: Full=Keratin-associated protein 5-4; AltName: ... 37 2.1
(Q5BQU6) RecName: Full=Uncharacterized protein SJCHGC09803; Flag... 37 2.1
T34513(T34513)hypothetical protein ZK783.1 - Caenorhabditis eleg... 37 2.1
AX647115_1(AX647115|pid:none) Sequence 1307 from Patent EP1270724. 37 2.1
AK302554_1(AK302554|pid:none) Homo sapiens cDNA FLJ51576 complet... 36 2.8
AL590997_30(AL590997|pid:none) Mouse DNA sequence from clone RP2... 36 2.8
FN317696_1(FN317696|pid:none) Schistosoma japonicum isolate Anhu... 36 2.8
T28674(T28674) alpha-51D-immobilization antigen - Paramecium tet... 36 2.8
(P78504) RecName: Full=Protein jagged-1; Short=Jagged1;... 36 2.8
EU854565_1(EU854565|pid:none) Danio rerio fibrillin 4 (fbn4) mRN... 36 2.8
AF003521_1(AF003521|pid:none) Homo sapiens Jagged 2 mRNA, comple... 36 2.8
AB209873_1(AB209873|pid:none) Homo sapiens mRNA for notch1 prepr... 36 2.8
AK312722_1(AK312722|pid:none) Homo sapiens cDNA, FLJ93126, highl... 36 2.8
(P10079) RecName: Full=Fibropellin-1; AltName: Full=Fibropellin-... 36 2.8
CP000113_5302(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 36 2.8
AF029778_1(AF029778|pid:none) Homo sapiens Jagged2 (JAG2) mRNA, ... 36 2.8
AM270078_56(AM270078|pid:none) Aspergillus niger contig An04c017... 36 2.8
(P46531) RecName: Full=Neurogenic locus notch homolog protein 1;... 36 2.8
CP000592_153(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 36 2.8
AF029779_1(AF029779|pid:none) Homo sapiens hJAG2.del-E6 (JAG2) m... 36 2.8
AF020201_1(AF020201|pid:none) Homo sapiens Jagged 2 mRNA, comple... 36 2.8
U61276_1(U61276|pid:none) Human transmembrane protein Jagged 1 (... 36 2.8
BC098393_1(BC098393|pid:none) Homo sapiens jagged 1 (Alagille sy... 36 2.8
Y14330_1(Y14330|pid:none) Homo sapiens partial mRNA for jagged2 ... 36 2.8
Y15520_1(Y15520|pid:none) Papio hamadryas anubis gene encoding f... 36 3.6
AB041857_1(AB041857|pid:none) Ciona intestinalis mRNA for Ci-MET... 36 3.6
AF016445_8(AF016445|pid:none) Caenorhabditis elegans cosmid T05B... 36 3.6
AE014297_4237(AE014297|pid:none) Drosophila melanogaster chromos... 36 3.6
AY123122_1(AY123122|pid:none) Griffithsia japonica notch-like pr... 36 3.6
S18188(S18188)notch protein homolog - rat 36 3.6
AB100603_1(AB100603|pid:none) Mus musculus Notch1 gene for trans... 36 3.6
AY230135_1(AY230135|pid:none) Xiphophorus xiphidium epidermal gr... 36 3.6
AJ536342_1(AJ536342|pid:none) Glomeris marginata partial mRNA fo... 36 3.6
AB100603_2(AB100603|pid:none) Mus musculus Notch1 gene for trans... 36 3.6
BT011327_1(BT011327|pid:none) Drosophila melanogaster SD22390 fu... 36 3.6
(Q01705) RecName: Full=Neurogenic locus notch homolog protein 1;... 36 3.6
AF508809_1(AF508809|pid:none) Mus musculus notch 1 protein mRNA,... 36 3.6
(O88799) RecName: Full=Zonadhesin; Flags: Precursor; &T42215(T4... 35 4.7
AY765220_1(AY765220|pid:none) Tetrahymena pyriformis GL metallot... 35 4.7
AJ536344_1(AJ536344|pid:none) Archispirostreptus sp. HD-2003 par... 35 4.7
AM502222_18(AM502222|pid:none) Leishmania infantum chromosome 4. 35 4.7
EU973332_1(EU973332|pid:none) Zea mays clone 396882 keratin-asso... 35 4.7
BX571800_1(BX571800|pid:none) Zebrafish DNA sequence from clone ... 35 4.7
AF035532_1(AF035532|pid:none) HIV-1 isolate ACH168.10 clone 168P... 35 6.2
CR861193_1(CR861193|pid:none) Pongo abelii mRNA; cDNA DKFZp459D0... 35 6.2
(P60409) RecName: Full=Keratin-associated protein 10-7; AltName:... 35 6.2
(P46530) RecName: Full=Neurogenic locus notch homolog protein 1;... 35 6.2
AJ295157_1(AJ295157|pid:none) Crassostrea gigas partial mt3 gene... 35 6.2
AB174356_1(AB174356|pid:none) Macaca fascicularis brain cDNA clo... 35 6.2
AY540953_1(AY540953|pid:none) Strongylocentrotus purpuratus prot... 35 6.2
(Q9Y6R7) RecName: Full=IgGFc-binding protein; AltName: Full=Fcga... 35 6.2
DQ900937_1(DQ900937|pid:none) Ciona intestinalis gamma-carboxygl... 35 6.2
BC084953_1(BC084953|pid:none) Xenopus laevis X-Serrate-1 protein... 35 6.2
BX004766_1(BX004766|pid:none) Zebrafish DNA sequence from clone ... 35 6.2
BC163889_1(BC163889|pid:none) Danio rerio jagged 2, mRNA (cDNA c... 35 6.2
BC147871_1(BC147871|pid:none) Bos taurus dickkopf homolog 3 (Xen... 35 6.2
AF106933_1(AF106933|pid:none) Drosophila melanogaster plexin B (... 35 6.2
AF355595_1(AF355595|pid:none) Aedes aegypti lipophorin receptor ... 35 6.2
AF229450_1(AF229450|pid:none) Danio rerio jagged2 (jag2) mRNA, c... 35 6.2
AF035533_1(AF035533|pid:none) HIV-1 isolate ACH168.10 clone 168P... 35 6.2
CP001328_607(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 35 6.2
AF090432_1(AF090432|pid:none) Danio rerio serrateB mRNA, complet... 35 6.2
U15030_1(U15030|pid:none) Human immunodeficiency virus type 1 is... 35 6.2
AM746676_551(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 35 6.2
EU000310_1(EU000310|pid:none) Venerupis (Ruditapes) decussatus m... 35 6.2
AY348869_1(AY348869|pid:none) Aedes aegypti lipophorin receptor ... 35 6.2
BC030871_1(BC030871|pid:none) Mus musculus Fc fragment of IgG bi... 35 6.2
AE014296_2190(AE014296|pid:none) Drosophila melanogaster chromos... 28 7.4
BT011026_1(BT011026|pid:none) Drosophila melanogaster RE46519 fu... 28 7.5
AK122555_1(AK122555|pid:none) Mus musculus mRNA for mKIAA1781 pr... 35 8.1
(Q9BYS1) RecName: Full=Keratin-associated protein 1-5; AltName: ... 35 8.1
(Q80T91) RecName: Full=Multiple epidermal growth factor-like dom... 35 8.1
Z69717_3(Z69717|pid:none) Caenorhabditis elegans Cosmid E01G6, c... 35 8.1
CP000113_6200(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 35 8.1
BC145174_1(BC145174|pid:none) Mus musculus low density lipoprote... 35 8.1
(P60411) RecName: Full=Keratin-associated protein 10-9; AltName:... 35 8.1
AM746676_6036(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 8.1
T20406(T20406)hypothetical protein E01G6.1 - Caenorhabditis eleg... 35 8.1
F87789(F87789) protein C34G6.2 [imported] - Caenorhabditis elega... 35 8.1
AB076354_1(AB076354|pid:none) Homo sapiens KRTAP18.7 mRNA for ke... 35 8.1
BT045410_1(BT045410|pid:none) Salmo salar clone ssal-rgf-520-232... 35 8.1
AF214523_1(AF214523|pid:none) Drosophila melanogaster SP460 mRNA... 35 8.1
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 35 8.1
AM494941_25(AM494941|pid:none) Leishmania braziliensis chromosom... 35 8.1
CR383662_1(CR383662|pid:none) Zebrafish DNA sequence from clone ... 35 8.1
CP001332_225(CP001332|pid:none) Micromonas sp. RCC299 chromosome... 35 8.1
AM746676_4111(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 8.1
EU273942_1(EU273942|pid:none) Amphimedon queenslandica notch mRN... 35 8.1
AB098169_1(AB098169|pid:none) Monosiga ovata MoPTK-g mRNA for re... 35 8.1
Z81513_14(Z81513|pid:none) Caenorhabditis elegans Cosmid F26D2, ... 35 8.1
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 35 8.1
DQ917570_1(DQ917570|pid:none) Parhyale hawaiensis delta protein ... 35 8.1
AK051642_1(AK051642|pid:none) Mus musculus 12 days embryo spinal... 35 8.1
>AC115607_13(AC115607|pid:none) Dictyostelium discoideum chromosome 2
map 4559693-4624405 strain AX4, complete sequence.
Length = 368
Score = 374 bits (961), Expect = e-102
Identities = 184/224 (82%), Positives = 187/224 (83%), Gaps = 6/224 (2%)
Frame = +3
Query: 639 HINLIVPLQ------KTCQEPWTKKLNEKCDNSPDAQRIPFFYDCDIGSNLYCGSQGKCV 800
++NL+ Q KTCQEPWTKKLNEKCDNSPDAQRIPFFYDCDIGSNLYCGSQGKCV
Sbjct: 172 NVNLVCSYQSDSSTSKTCQEPWTKKLNEKCDNSPDAQRIPFFYDCDIGSNLYCGSQGKCV 231
Query: 801 LNTPSGTCSQCSNSTACKGYSDSCICNNNNIAKDTINANKVGICVPEVFIDSSCKSTFGD 980
LNTPSGTCSQCSNSTACKGYSDSCICNNNNIAKDTINANKVGICVPEVFIDSS
Sbjct: 232 LNTPSGTCSQCSNSTACKGYSDSCICNNNNIAKDTINANKVGICVPEVFIDSSY------ 285
Query: 981 LIQCCATYSCPMNQQLLFNQDSCAFKNCQQYVCKMSNCFRATGAYNMLNLAQTACGSTYS 1160
SCAFKNCQQYVCKMSNCFRATGAYNMLNLAQTACGSTYS
Sbjct: 286 ---------------------SCAFKNCQQYVCKMSNCFRATGAYNMLNLAQTACGSTYS 324
Query: 1161 LPKDYTKECPFELPKQSDRPNNSSSMIPSIFFAIFFVLTMIILS 1292
LPKDYTKECPFELPKQSDRPNNSSSMIPSIFFAIFFVLTMIILS
Sbjct: 325 LPKDYTKECPFELPKQSDRPNNSSSMIPSIFFAIFFVLTMIILS 368
Score = 371 bits (953), Expect = e-101
Identities = 173/187 (92%), Positives = 174/187 (93%)
Frame = +2
Query: 107 MNKYTXXXXXXXXXXXXXCFGQISPAIMCFNDPSIVAIGSTCNTTGDSCAFNSYCNGAPI 286
MNKYT CFGQISPAIMCFNDPSIVAIGSTCNTTG+SCAFNSYCNGAPI
Sbjct: 1 MNKYTIILILLFLNTLSICFGQISPAIMCFNDPSIVAIGSTCNTTGNSCAFNSYCNGAPI 60
Query: 287 GKCTQSLSKGDSCTSNIQCSPYQCVNGVCGNNHFSIAGQGCSVDSDCWASPIPGQEALLT 466
GKCTQSLSKGDSCTSNIQCSPYQCVNGVCGNNHFSIAGQGCSVDSDCWASPIPGQEALLT
Sbjct: 61 GKCTQSLSKGDSCTSNIQCSPYQCVNGVCGNNHFSIAGQGCSVDSDCWASPIPGQEALLT 120
Query: 467 CSSNICTLIANKQCKSPSDCKFNENCVSKGGVNSCVATSGINGACSNRYDCNVNLVCSYQ 646
CSSNICTLIANKQCKSPSDCKFNENCVSKGGVNSCVATSGINGACSNRYDCNVNLVCSYQ
Sbjct: 121 CSSNICTLIANKQCKSPSDCKFNENCVSKGGVNSCVATSGINGACSNRYDCNVNLVCSYQ 180
Query: 647 SDSSTSK 667
SDSSTSK
Sbjct: 181 SDSSTSK 187
Score = 35.4 bits (80), Expect = 4.7
Identities = 28/100 (28%), Positives = 39/100 (39%)
Frame = +3
Query: 792 KCVLNTPSGTCSQCSNSTACKGYSDSCICNNNNIAKDTINANKVGICVPEVFIDSSCKST 971
+ +L S C+ +N CK SD C N N ++K +N SC +T
Sbjct: 116 EALLTCSSNICTLIANKQ-CKSPSD-CKFNENCVSKGGVN---------------SCVAT 158
Query: 972 FGDLIQCCATYSCPMNQQLLFNQDSCAFKNCQQYVCKMSN 1091
G C Y C +N + DS K CQ+ K N
Sbjct: 159 SGINGACSNRYDCNVNLVCSYQSDSSTSKTCQEPWTKKLN 198
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,997,776,972
Number of extensions: 40093478
Number of successful extensions: 101053
Number of sequences better than 10.0: 225
Number of HSP's gapped: 100261
Number of HSP's successfully gapped: 352
Length of query: 447
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 315
Effective length of database: 623,955,076
Effective search space: 196545848940
Effective search space used: 196545848940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
1 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
2 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |