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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15090-1
Contig ID Contig-U15090-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15090-1 (Contig-U15090-1Q) /CSM_Contig/Contig-U15090-1Q.Seq.d
GGGCAGGATCATCATTTAATACTAAAGATTCAACAATAATTGCAAAAACT
CAATTTTATCAAAAAAATATTCAAATTTATAAAGGTGATCAATTATCACA
AACCATTCAATTAATTCAAAATCCAACTCAAATTAATTATTTTGATCATG
AAAAATCTCAAACTTCACTTTTAGCTATAACTGAATTTAATCAATTAAAA
ATTTTTGATCCAAGACAATCTTCAAATAATTGTTGTATTCAAAAGTTTAC
TCCAGGAACATCATGGTTATATTCAATGGCGATTTCATCAAATTCAGAAT
ATATAGCAGTTGGTGGATCATCAAGAACTGTTAGTGTTTATGATACAAAG
AGATGGAATAATTCAGGTAATTGGAAGAATTGTTTAAAGTACGAGATTAC
AAATATTGAATTTTCAAATACAAGACCTTCGATTTGTTATGTTGGTGGAT
TGGATTCAGAAGTTTTAGCAGGTGAATGGAATGGTTCAAGTGGTGTCGAT
CATTTCACTGGTCTTAGAGTTGATTCCAAATGGTTAGGTTTATCAAAATT
AAGAGATCAAGAATATATATTTGGTTATACTGGTTCTTCTTCAATCTATT
ATATCGATAATTGTGATAAATTATTCCAAGGTACTTTATCTGAAAAATCA
TTACACAATACTTCAAAACAAGAAAAAAAACAACAACATCAATTAAATAA
TCAATTAAAACAACAACAACAAAAAGATAAACAAGAACAACAACAACAAC
AACAACAACCAAATGAACAAGTTATGCAAGAAAGTGATAATAGTAATAGT
AATAATAATAATAATAATAATGAAACAACAATTGGTAAAGCAAGATCAAT
TGAAGGTTCACCAACAGGTGATGAAAAACATCAATCAAAAAAATTAAAAA
AGGAAGAATAAATAAATAATTTATTATTAAAAC
Gap no gap
Contig length 933
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4303957
End point 4304889
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U15090
List of clone(s) 

est1=FC-AA16E,1,933
Translated Amino Acid sequence 
AGSSFNTKDSTIIAKTQFYQKNIQIYKGDQLSQTIQLIQNPTQINYFDHEKSQTSLLAIT
EFNQLKIFDPRQSSNNCCIQKFTPGTSWLYSMAISSNSEYIAVGGSSRTVSVYDTKRWNN
SGNWKNCLKYEITNIEFSNTRPSICYVGGLDSEVLAGEWNGSSGVDHFTGLRVDSKWLGL
SKLRDQEYIFGYTGSSSIYYIDNCDKLFQGTLSEKSLHNTSKQEKKQQHQLNNQLKQQQQ
KDKQEQQQQQQQPNEQVMQESDNSNSNNNNNNNETTIGKARSIEGSPTGDEKHQSKKLKK
EE*innlllk
Translated Amino Acid sequence (All Frames) 
Frame A:
gqdhhlilkiqq*lqklnfikkifkfikvinyhkpfn*fkiqlkliilimknlklhf*l*
lnlin*kfliqdnlqiivvfksllqehhgyiqwrfhqiqni*qlvdhqellvfmiqrdgi
iqvigriv*strlqilnfqiqdlrfvmlvdwiqkf*qvngmvqvvsiislvlelipng*v
yqn*eikniylvilvllqsiisiivinyskvlylknhytilqnkkknnnin*iin*nnnn
kkinknnnnnnnnqmnklckkviiviviiiiiimkqqlvkqdqlkvhqqvmkninqkn*k
rknk*iiyy*n


Frame B:
griii*y*rfnnncknsilskkysnl*r*siitnhsinsksnsn*lf*s*kisnftfsyn
*i*siknf*sktifk*llyskvysrnimvifngdfikfriysswwiiknc*cl*ykeme*
fr*leelfkvrdyky*ifkyktfdllcwwigfrsfsr*mewfkwcrsfhws*s*fqmvrf
ikikrsriyiwlywfffnllyr*l**iipryfi*kiitqyfktrkktttsik*siktttt
kr*trttttttttk*tsyark*************nnnw*skin*rftnr**ktsikkikk
grink*fiik


Frame C:
AGSSFNTKDSTIIAKTQFYQKNIQIYKGDQLSQTIQLIQNPTQINYFDHEKSQTSLLAIT
EFNQLKIFDPRQSSNNCCIQKFTPGTSWLYSMAISSNSEYIAVGGSSRTVSVYDTKRWNN
SGNWKNCLKYEITNIEFSNTRPSICYVGGLDSEVLAGEWNGSSGVDHFTGLRVDSKWLGL
SKLRDQEYIFGYTGSSSIYYIDNCDKLFQGTLSEKSLHNTSKQEKKQQHQLNNQLKQQQQ
KDKQEQQQQQQQPNEQVMQESDNSNSNNNNNNNETTIGKARSIEGSPTGDEKHQSKKLKK
EE*innlllk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15090-1 (Contig-U15090-1Q)
/CSM_Contig/Contig-U15090-1Q.Seq.d
         (933 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15090-1 (Contig-U15090-1Q) /CSM_Contig/Conti...  1291  0.0
Contig-U15513-1 (Contig-U15513-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11492-1 (Contig-U11492-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U01111-1 (Contig-U01111-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U15020-1 (Contig-U15020-1Q) /CSM_Contig/Conti...    36  0.094
Contig-U14766-1 (Contig-U14766-1Q) /CSM_Contig/Conti...    36  0.094
Contig-U13998-1 (Contig-U13998-1Q) /CSM_Contig/Conti...    36  0.094
Contig-U12484-1 (Contig-U12484-1Q) /CSM_Contig/Conti...    36  0.094
Contig-U12429-1 (Contig-U12429-1Q) /CSM_Contig/Conti...    36  0.094
Contig-U11893-1 (Contig-U11893-1Q) /CSM_Contig/Conti...    36  0.094

>Contig-U15090-1 (Contig-U15090-1Q) /CSM_Contig/Contig-U15090-1Q.Seq.d
          Length = 933

 Score = 1291 bits (651), Expect = 0.0
 Identities = 665/672 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggcaggatcatcatttaatactaaagattcaacaataattgcaaaaactcaattttatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gggcaggatcatcatttaatactaaagattcaacaataattgcaaaaactcaattttatc 60

                                                                       
Query: 61  nnnnnnntattcaaatttataaaggtgatcaattatcacaaaccattcaattaattcaaa 120
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaaaaatattcaaatttataaaggtgatcaattatcacaaaccattcaattaattcaaa 120

                                                                       
Query: 121 atccaactcaaattaattattttgatcatgaaaaatctcaaacttcacttttagctataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atccaactcaaattaattattttgatcatgaaaaatctcaaacttcacttttagctataa 180

                                                                       
Query: 181 ctgaatttaatcaattaaaaatttttgatccaagacaatcttcaaataattgttgtattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgaatttaatcaattaaaaatttttgatccaagacaatcttcaaataattgttgtattc 240

                                                                       
Query: 241 aaaagtttactccaggaacatcatggttatattcaatggcgatttcatcaaattcagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaagtttactccaggaacatcatggttatattcaatggcgatttcatcaaattcagaat 300

                                                                       
Query: 301 atatagcagttggtggatcatcaagaactgttagtgtttatgatacaaagagatggaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atatagcagttggtggatcatcaagaactgttagtgtttatgatacaaagagatggaata 360

                                                                       
Query: 361 attcaggtaattggaagaattgtttaaagtacgagattacaaatattgaattttcaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attcaggtaattggaagaattgtttaaagtacgagattacaaatattgaattttcaaata 420

                                                                       
Query: 421 caagaccttcgatttgttatgttggtggattggattcagaagttttagcaggtgaatgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caagaccttcgatttgttatgttggtggattggattcagaagttttagcaggtgaatgga 480

                                                                       
Query: 481 atggttcaagtggtgtcgatcatttcactggtcttagagttgattccaaatggttaggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atggttcaagtggtgtcgatcatttcactggtcttagagttgattccaaatggttaggtt 540

                                                                       
Query: 541 tatcaaaattaagagatcaagaatatatatttggttatactggttcttcttcaatctatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatcaaaattaagagatcaagaatatatatttggttatactggttcttcttcaatctatt 600

                                                                       
Query: 601 atatcgataattgtgataaattattccaaggtactttatctgaaaaatcattacacaata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atatcgataattgtgataaattattccaaggtactttatctgaaaaatcattacacaata 660

                       
Query: 661 cttcaaaacaag 672
           ||||||||||||
Sbjct: 661 cttcaaaacaag 672


 Score =  129 bits (65), Expect = 8e-30
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                       
Query: 822 gaaacaacaattggtaaagcaagatcaattgaaggttcaccaacaggtgatgaaaaacat 881
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaaacaacaattggtaaagcaagatcaattgaaggttcaccaacaggtgatgaaaaacat 881

                
Query: 882 caatc 886
           |||||
Sbjct: 882 caatc 886


 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 902 ggaagaataaataaataatttattattaaaac 933
           ||||||||||||||||||||||||||||||||
Sbjct: 902 ggaagaataaataaataatttattattaaaac 933


 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 760 caaatgaacaagttatgcaagaaagtg 786
           |||||||||||||||||||||||||||
Sbjct: 760 caaatgaacaagttatgcaagaaagtg 786


>Contig-U15513-1 (Contig-U15513-1Q) /CSM_Contig/Contig-U15513-1Q.Seq.d
          Length = 2566

 Score = 38.2 bits (19), Expect = 0.024
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 907 aataaataaataatttatt 925
           |||||||||||||||||||
Sbjct: 110 aataaataaataatttatt 92


>Contig-U11492-1 (Contig-U11492-1Q) /CSM_Contig/Contig-U11492-1Q.Seq.d
          Length = 997

 Score = 38.2 bits (19), Expect = 0.024
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 105 attcaattaattcaaaatc 123
           |||||||||||||||||||
Sbjct: 441 attcaattaattcaaaatc 459


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,340
Number of Sequences: 8402
Number of extensions: 25340
Number of successful extensions: 4998
Number of sequences better than 10.0: 378
length of query: 933
length of database: 8,075,542
effective HSP length: 16
effective length of query: 917
effective length of database: 7,941,110
effective search space: 7281997870
effective search space used: 7281997870
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.11
Homology vs DNA 
Query= Contig-U15090-1 (Contig-U15090-1Q) /CSM_Contig/Contig-U15090-1Q.Seq.d
         (933 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C23639) Dictyostelium discoideum gamete cDNA, clone FCAA16.     1181   0.0    2
(FI066744) CHO_OF7269xp18f1.ab1 CHO_OF7 Nicotiana tabacum ge...    40   0.12   2
(FI041478) CHO_OF6466xc20r1.ab1 CHO_OF6 Nicotiana tabacum ge...    40   0.12   2
(FH439883) CHO_OF4609xc13f1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   0.12   2
(EF612188) Dictyostelium minutum unknown (Dm0233813) gene, p...    50   0.15   1
(BH550897) BOGFB16TF BOGF Brassica oleracea genomic clone BO...    50   0.15   1
(DH123359) Oryzias latipes Fosmid clone:GOLWFno388_n03, forw...    48   0.60   1
(EY573035) CAWU12813.rev CAWU Capitella sp. I ECS-2004 Prima...    48   0.60   1
(CU655954) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.3    2
(AM432676) Vitis vinifera contig VV78X192973.4, whole genome...    36   1.5    3
(ET372099) S0233B05_T7 CHORI-214 Salmo salar genomic clone S...    46   2.4    1
(ET093006) QM0AAA19AF07RM1 CCL1 Citrus clementina genomic cl...    46   2.4    1
(EL688539) OPSC00294 Elaeis guineensis Suspension cell cultu...    46   2.4    1
(CP000049) Borrelia turicatae 91E135, complete genome.             34   2.5    12
(AC179481) Strongylocentrotus purpuratus clone R3-63M7, WORK...    32   4.5    2
(AL021573) Caenorhabditis elegans DNA *** SEQUENCING IN PROG...    38   5.9    8
(BV503001) qke09a11.b1 Clint Pan troglodytes verus STS genom...    36   7.4    2
(AX282714) Sequence 1 from Patent WO0164876.                       38   7.5    5
(AX282122) Sequence 1 from Patent WO0164877.                       38   7.5    5
(EK187292) 1095460006175 Global-Ocean-Sampling_GS-31-01-01-1...    38   7.6    2
(EJ622925) 1092963102557 Global-Ocean-Sampling_GS-29-01-01-1...    34   9.0    3
(CU075930) Zebrafish DNA sequence from clone CH73-355E4 in l...    44   9.4    1
(BX571960) Zebrafish DNA sequence from clone DKEY-165I8 in l...    44   9.4    1
(AC155159) Mus musculus BAC clone RP24-482D1 from 18, comple...    44   9.4    1
(AC150277) Mus musculus BAC clone RP23-97E12 from 18, comple...    44   9.4    1
(AC125194) Mus musculus BAC clone RP23-275K6 from chromosome...    44   9.4    1
(CT573510) Medicago truncatula chromosome 5 clone mth4-41f7,...    44   9.4    1
(AM450295) Vitis vinifera contig VV78X167890.13, whole genom...    44   9.4    1
(AC146555) Medicago truncatula clone mth2-10p14, complete se...    44   9.4    1
(AF043699) Caenorhabditis elegans cosmid K02F2, complete seq...    44   9.4    1
(AL356010) Human DNA sequence from clone RP11-136B18 on chro...    44   9.4    1
(AC005540) Homo sapiens BAC clone RP11-533I8 from 2, complet...    44   9.4    1
(AC151058) Bos taurus clone CH240-113H9, WORKING DRAFT SEQUE...    44   9.4    1
(AC144746) Bos taurus clone CH240-113H9, WORKING DRAFT SEQUE...    44   9.4    1
(AC128231) Rattus norvegicus clone CH230-495M4, *** SEQUENCI...    44   9.4    1
(AC100253) Mus musculus clone RP23-66A2, LOW-PASS SEQUENCE S...    44   9.4    1
(AC098037) Rattus norvegicus clone CH230-90F19, *** SEQUENCI...    44   9.4    1
(CU694664) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.4    1
(CT737403) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.4    1
(CT033766) Medicago truncatula chromosome 5 clone mth4-42c9,...    44   9.4    1
(CR388218) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.4    1
(AC180924) Strongylocentrotus purpuratus clone R3-3064B18, W...    44   9.4    1
(AC179657) Strongylocentrotus purpuratus clone R3-1024G02, W...    44   9.4    1
(AC024487) Homo sapiens chromosome 1 clone RP11-136B18 map 1...    44   9.4    1
(AC022753) Homo sapiens clone RP11-236L13, WORKING DRAFT SEQ...    44   9.4    1
(AZ218963) Sheared DNA-119G6.TR Sheared DNA Trypanosoma bruc...    44   9.4    1
(EK421065) 1095515506994 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.4    1
(EJ381092) 1092963762214 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.4    1
(DU989688) KBrH084L15R KBrH (HindIII) BAC library Brassica r...    44   9.4    1
(CU157160) Equus caballus GSS, BAC clone CH241-295G15, SP6 e...    44   9.4    1
(CR920552) Sus scrofa BES.                                         44   9.4    1
(CL920616) OA_ABa0025B04.r OA_ABa Oryza australiensis genomi...    44   9.4    1
(CC475818) CH240_301E12.TARBAC13P2 CHORI-240 Bos taurus geno...    44   9.4    1
(DY892777) CeleSEQ11784 Cunninghamella elegans pBluescript (...    44   9.4    1
(CN774843) tae74e11.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   9.4    1
(CN634057) taf55g07.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   9.4    1
(CN629670) taf38d12.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   9.4    1
(CN554261) tae34h08.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   9.4    1
(CN154715) 941947 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence.     44   9.4    1
(FC557439) CAWC597.rev CAWC Lottia gigantea from head (L) Lo...    44   9.4    1
(EY830349) PT11-C2-300-052-A05-CT.F Poncirus trifoliata bark...    44   9.4    1

>(C23639) Dictyostelium discoideum gamete cDNA, clone FCAA16.
          Length = 933

 Score = 1181 bits (596), Expect(2) = 0.0
 Identities = 596/596 (100%)
 Strand = Plus / Plus


Query: 68  tattcaaatttataaaggtgatcaattatcacaaaccattcaattaattcaaaatccaac 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tattcaaatttataaaggtgatcaattatcacaaaccattcaattaattcaaaatccaac 127


Query: 128 tcaaattaattattttgatcatgaaaaatctcaaacttcacttttagctataactgaatt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tcaaattaattattttgatcatgaaaaatctcaaacttcacttttagctataactgaatt 187


Query: 188 taatcaattaaaaatttttgatccaagacaatcttcaaataattgttgtattcaaaagtt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 taatcaattaaaaatttttgatccaagacaatcttcaaataattgttgtattcaaaagtt 247


Query: 248 tactccaggaacatcatggttatattcaatggcgatttcatcaaattcagaatatatagc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tactccaggaacatcatggttatattcaatggcgatttcatcaaattcagaatatatagc 307


Query: 308 agttggtggatcatcaagaactgttagtgtttatgatacaaagagatggaataattcagg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agttggtggatcatcaagaactgttagtgtttatgatacaaagagatggaataattcagg 367


Query: 368 taattggaagaattgtttaaagtacgagattacaaatattgaattttcaaatacaagacc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taattggaagaattgtttaaagtacgagattacaaatattgaattttcaaatacaagacc 427


Query: 428 ttcgatttgttatgttggtggattggattcagaagttttagcaggtgaatggaatggttc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttcgatttgttatgttggtggattggattcagaagttttagcaggtgaatggaatggttc 487


Query: 488 aagtggtgtcgatcatttcactggtcttagagttgattccaaatggttaggtttatcaaa 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagtggtgtcgatcatttcactggtcttagagttgattccaaatggttaggtttatcaaa 547


Query: 548 attaagagatcaagaatatatatttggttatactggttcttcttcaatctattatatcga 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 attaagagatcaagaatatatatttggttatactggttcttcttcaatctattatatcga 607


Query: 608 taattgtgataaattattccaaggtactttatctgaaaaatcattacacaatactt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 taattgtgataaattattccaaggtactttatctgaaaaatcattacacaatactt 663

 Score =  119 bits (60), Expect(2) = 0.0
 Identities = 60/60 (100%)
 Strand = Plus / Plus


Query: 1  gggcaggatcatcatttaatactaaagattcaacaataattgcaaaaactcaattttatc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gggcaggatcatcatttaatactaaagattcaacaataattgcaaaaactcaattttatc 60

 Score =  129 bits (65), Expect(2) = 4e-29
 Identities = 65/65 (100%)
 Strand = Plus / Plus


Query: 822 gaaacaacaattggtaaagcaagatcaattgaaggttcaccaacaggtgatgaaaaacat 881
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaaacaacaattggtaaagcaagatcaattgaaggttcaccaacaggtgatgaaaaacat 881


Query: 882 caatc 886
           |||||
Sbjct: 882 caatc 886

 Score = 32.2 bits (16), Expect(2) = 4e-29
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 771 gttatgcaagaaagtg 786
           ||||||||||||||||
Sbjct: 771 gttatgcaagaaagtg 786

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 961,139,548
Number of extensions: 57951887
Number of successful extensions: 4587426
Number of sequences better than 10.0: 61
Length of query: 933
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 909
Effective length of database: 97,308,875,965
Effective search space: 88453768252185
Effective search space used: 88453768252185
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U15090-1 (Contig-U15090-1Q) /CSM_Contig/Contig-U15090-1Q.Seq.d
         (933 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM433160_1(AM433160|pid:none) Vitis vinifera contig VV78X023879....   127   5e-28
BT065157_1(BT065157|pid:none) Zea mays full-length cDNA clone ZM...   124   4e-27
AK101243_1(AK101243|pid:none) Oryza sativa Japonica Group cDNA c...   121   3e-26
CR954215_193(CR954215|pid:none) Ostreococcus tauri strain OTTH05...    90   1e-16
CP000594_264(CP000594|pid:none) Ostreococcus lucimarinus CCE9901...    87   6e-16
CP001330_537(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    77   8e-13
CP000932_969(CP000932|pid:none) Campylobacter lari RM2100, compl...    47   7e-04
AF323581_1(AF323581|pid:none) Podospora anserina beta transducin...    46   0.002
CU074315_1(CU074315|pid:none) Podospora anserina genomic DNA, NW...    43   0.017
AF323582_1(AF323582|pid:none) Podospora anserina beta transducin...    43   0.017
AF323584_1(AF323584|pid:none) Podospora anserina beta transducin...    43   0.017
AF323583_1(AF323583|pid:none) Podospora anserina beta transducin...    43   0.017
(Q00808) RecName: Full=Vegetative incompatibility protein HET-E-...    42   0.030
CP000155_1155(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    41   0.066
CP000828_167(CP000828|pid:none) Acaryochloris marina MBIC11017, ...    39   0.25
CP000094_2970(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...    39   0.25
CP000492_814(CP000492|pid:none) Chlorobium phaeobacteroides DSM ...    39   0.33
CP000828_5861(CP000828|pid:none) Acaryochloris marina MBIC11017,...    38   0.56
AL032627_17(AL032627|pid:none) Caenorhabditis elegans YAC Y41C4A...    37   0.74
BT039495_1(BT039495|pid:none) Zea mays full-length cDNA clone ZM...    37   0.74
CP000117_2617(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    37   0.96
CP001037_5275(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    37   1.3
BT044863_1(BT044863|pid:none) Salmo salar clone ssal-rgf-505-369...    37   1.3
CP000383_1228(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    31   1.6
FN357618_1(FN357618|pid:none) Schistosoma mansoni genome sequenc...    36   1.6
AL111168_731(AL111168|pid:none) Campylobacter jejuni subsp. jeju...    36   2.1
L24437_1(L24437|pid:none) Arabidopsis thaliana (COP1) regulatory...    36   2.1
CP000724_1873(CP000724|pid:none) Alkaliphilus metalliredigens QY...    36   2.1
EU965800_1(EU965800|pid:none) Zea mays clone 289040 unknown mRNA.      35   2.8
(P43254) RecName: Full=E3 ubiquitin-protein ligase COP1;        ...    35   3.6
CU074274_1(CU074274|pid:none) Podospora anserina genomic DNA, NW...    35   3.6
AK060679_1(AK060679|pid:none) Oryza sativa Japonica Group cDNA c...    35   4.8
AY812576_1(AY812576|pid:none) Schistosoma japonicum SJCHGC01217 ...    35   4.8
CP000117_5003(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    34   6.2
(Q8YTC2) RecName: Full=Uncharacterized WD repeat-containing prot...    34   6.2
(A7A258) RecName: Full=Autophagy-related protein 18; AltName: Fu...    34   6.2
(O15736) RecName: Full=Protein tipD;  &AF019236_1(AF019236|pid:n...    34   8.1
AE009952_3270(AE009952|pid:none) Yersinia pestis KIM, complete g...    34   8.1
AM286415_3268(AM286415|pid:none) Yersinia enterocolitica subsp. ...    34   8.1

>AM433160_1(AM433160|pid:none) Vitis vinifera contig VV78X023879.2,
           whole genome shotgun sequence.
          Length = 442

 Score =  127 bits (319), Expect = 5e-28
 Identities = 66/191 (34%), Positives = 108/191 (56%), Gaps = 2/191 (1%)
 Frame = +3

Query: 42  AKTQFYQKNIQIYKGDQLSQTIQLIQNPTQINYFDH--EKSQTSLLAITEFNQLKIFDPR 215
           A  + + K+I +Y  D   +T++ +  P+ +++  +    ++ S+LA+TE  QL I+D R
Sbjct: 236 AVARSFCKSIDVYDQDIHLRTLRTLWYPSSLDFMQNLSNGNERSILAVTEGCQLTIWDLR 295

Query: 216 QSSNNCCIQKFTPGTSWLYSMAISSNSEYIAVGGSSRTVSVYDTKRWNNSGNWKNCLKYE 395
              N  C+ +       ++    SS++  IAVGG+ RTV +YD +RW+    W +C KYE
Sbjct: 296 MKENGSCVHRICGPLGDIFYAVTSSSTGSIAVGGADRTVIIYDPRRWSALSRWVHCSKYE 355

Query: 396 ITNIEFSNTRPSICYVGGLDSEVLAGEWNGSSGVDHFTGLRVDSKWLGLSKLRDQEYIFG 575
           IT + FS++ P   Y+ G+D EV  G+WN +  V  F G   DS WLG SK  +++ + G
Sbjct: 356 ITGLAFSSSDPDYIYIQGVDYEVFCGQWNENKKVFSFRG---DSNWLGFSKCPNRDVLGG 412

Query: 576 YTGSSSIYYID 608
           +  S SI+  D
Sbjct: 413 WCDSGSIFVAD 423

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,068,534,687
Number of extensions: 18479421
Number of successful extensions: 47096
Number of sequences better than 10.0: 39
Number of HSP's gapped: 47059
Number of HSP's successfully gapped: 46
Length of query: 311
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 183
Effective length of database: 636,901,312
Effective search space: 116552940096
Effective search space used: 116552940096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.73  gvh: 0.27  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U15090-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0