Contig-U15087-1
Contig ID Contig-U15087-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15087-1 (Contig-U15087-1Q) /CSM_Contig/Contig-U15087-1Q.Seq.d
AAATAATAATAATATAAAAATGGAAATTAAAGTTTTAGCTAAAAGAAAAG
TATCAGCAAAACGTGCAAATGAAATATTAGGAAAATTTATTTTAGAAAGA
AAAGCAAATGAAGAAAATAGATTATTTTTATCAGGAAATGCAACACCAAC
AGAGGATTTATTTCAAATTGTATCAAATTCATTAAATAAATTTCAAAATC
ATTTAAATGAATCAATTAATCCAGAATTAGCATTAACAGAGAATAATAAT
AACAATAATACAACAAATGGCGACTCATCCGATGAAGCCTTAATTCCAAT
GAGTGATGATCAACCAAATCCATTAAAAGATTCTTCAAATACACTTCAAA
TTGACGATGGTGATGTTTCAGAAAGATATTCTGATAGTGTTTCATCTTCA
ACAACAACAACAATAATTACAAATAATAAAAAAATAAATAATAATAATAA
CAATAAATCAAAAGATATCGGATAGTTCAAACTCTACTGAATCTGAAAAT
GAAAAATCTGTACAAAAAAGTAAAAAAGAAAAAGAATCTCCCAAAAAATT
AACAAAATCTAAAAAATCTAAAAAACAAGAATCATCTGACGAATCCTCAT
CAGAATCATCTTCATCTTCATCTTCATCTTCATCATCAGAGTCTTCCTCA
TCAGAATCAGAGTCTTCATCATCATCTGAAGATGAAAAAAAGAAAAAGAA
AAAGAAATCCTCTTCAACTTCATCAAAGAAATCTTCCTCAAAGAAAAGAA
AAGTAGAATCCTCTGATGATTCAGATTCTTCATCATCGAAGAAGAAAAAA
AGAAAAAAAAGAAAAAGCAAATAAATTAAAAAGAANAATTTAAAAAT

Gap no gap
Contig length 847
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3488172
End point 3487325
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U15087
List of clone(s)

est1=FC-AA12E,1,454
est2=VSJ183E,16,847
Translated Amino Acid sequence
NNNNIKMEIKVLAKRKVSAKRANEILGKFILERKANEENRLFLSGNATPTEDLFQIVSNS
LNKFQNHLNESINPELALTENNNNNNTTNGDSSDEALIPMSDDQPNPLKDSSNTLQIDDG
DVSERYSDSVSSSTTTTIITNNKKINNNNNNKSKDIG*fkly*i*k*kictkk*krkris
qkinki*ki*ktrii*riliriififififiirvflirirvfiii*r*kkekekeilfnf
ikeiflkekksril**frffiieeekkkkkkkqin*kexfkn


Translated Amino Acid sequence (All Frames)
Frame A:
k***ykngn*sfs*kksisktck*nirkiyfrkksk*rk*iifirkcntnrgfisncikf
ik*isksfk*in*srisinre***q*ynkwrlir*slnsne**stksikrffkytsn*rw
*cfrkif**cfifnnnnnnyk**knk****q*ikryrivqtllnlkmknlykkvkkkknl
pkn*qnlknlknknhltnphqnhlhlhlhlhhqslphqnqslhhhlkmkkrkrkrnplql
hqrnlpqrkek*nplmiqilhhrrrkkekkekanklkrxi*k


Frame B:
NNNNIKMEIKVLAKRKVSAKRANEILGKFILERKANEENRLFLSGNATPTEDLFQIVSNS
LNKFQNHLNESINPELALTENNNNNNTTNGDSSDEALIPMSDDQPNPLKDSSNTLQIDDG
DVSERYSDSVSSSTTTTIITNNKKINNNNNNKSKDIG*fkly*i*k*kictkk*krkris
qkinki*ki*ktrii*riliriififififiirvflirirvfiii*r*kkekekeilfnf
ikeiflkekksril**frffiieeekkkkkkkqin*kexfkn


Frame C:
iiii*kwklkf*lkekyqqnvqmky*enlf*kekqmkkidyfyqemqhqqriyfklyqih
*infkii*mnqliqn*h*qriiitiiqqmathpmkp*fq*vminqih*kilqihfkltmv
mfqkdilivfhlqqqqq*lqiikk*iiiitinqkisdssnsteseneksvqkskkekesp
kkltkskkskkqessdesssesssssssssssessssesesssssedekkkkkkksssts
skkssskkrkvessddsdsssskkkkrkkrksk*ikkxnlk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15087-1 (Contig-U15087-1Q)
/CSM_Contig/Contig-U15087-1Q.Seq.d
(847 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15087-1 (Contig-U15087-1Q) /CSM_Contig/Conti... 815 0.0
Contig-U15059-1 (Contig-U15059-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U15831-1 (Contig-U15831-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U11233-1 (Contig-U11233-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U01997-1 (Contig-U01997-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U15789-1 (Contig-U15789-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U13127-1 (Contig-U13127-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12860-1 (Contig-U12860-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U09356-1 (Contig-U09356-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U06268-1 (Contig-U06268-1Q) /CSM_Contig/Conti... 42 0.001

>Contig-U15087-1 (Contig-U15087-1Q) /CSM_Contig/Contig-U15087-1Q.Seq.d
Length = 847

Score = 815 bits (411), Expect = 0.0
Identities = 411/411 (100%)
Strand = Plus / Plus


Query: 1 aaataataataatataaaaatggaaattaaagttttagctaaaagaaaagtatcagcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaataataataatataaaaatggaaattaaagttttagctaaaagaaaagtatcagcaaa 60


Query: 61 acgtgcaaatgaaatattaggaaaatttattttagaaagaaaagcaaatgaagaaaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgtgcaaatgaaatattaggaaaatttattttagaaagaaaagcaaatgaagaaaatag 120


Query: 121 attatttttatcaggaaatgcaacaccaacagaggatttatttcaaattgtatcaaattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attatttttatcaggaaatgcaacaccaacagaggatttatttcaaattgtatcaaattc 180


Query: 181 attaaataaatttcaaaatcatttaaatgaatcaattaatccagaattagcattaacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attaaataaatttcaaaatcatttaaatgaatcaattaatccagaattagcattaacaga 240


Query: 241 gaataataataacaataatacaacaaatggcgactcatccgatgaagccttaattccaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaataataataacaataatacaacaaatggcgactcatccgatgaagccttaattccaat 300


Query: 301 gagtgatgatcaaccaaatccattaaaagattcttcaaatacacttcaaattgacgatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagtgatgatcaaccaaatccattaaaagattcttcaaatacacttcaaattgacgatgg 360


Query: 361 tgatgtttcagaaagatattctgatagtgtttcatcttcaacaacaacaac 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgatgtttcagaaagatattctgatagtgtttcatcttcaacaacaacaac 411


Score = 172 bits (87), Expect = 6e-43
Identities = 87/87 (100%)
Strand = Plus / Plus


Query: 708 tcctcttcaacttcatcaaagaaatcttcctcaaagaaaagaaaagtagaatcctctgat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tcctcttcaacttcatcaaagaaatcttcctcaaagaaaagaaaagtagaatcctctgat 767


Query: 768 gattcagattcttcatcatcgaagaag 794
|||||||||||||||||||||||||||
Sbjct: 768 gattcagattcttcatcatcgaagaag 794


Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 464 gatatcggatagttcaaactctactgaatct 494
|||||||||||||||||||||||||||||||
Sbjct: 464 gatatcggatagttcaaactctactgaatct 494


Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 242 aataataataacaataa 258
|||||||||||||||||
Sbjct: 440 aataataataacaataa 456


>Contig-U15059-1 (Contig-U15059-1Q) /CSM_Contig/Contig-U15059-1Q.Seq.d
Length = 1812

Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 720 tcatcaaagaaatcttcctcaaagaaa 746
||||||||||||||||| |||||||||
Sbjct: 1522 tcatcaaagaaatcttcatcaaagaaa 1548


>Contig-U15831-1 (Contig-U15831-1Q) /CSM_Contig/Contig-U15831-1Q.Seq.d
Length = 2660

Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 242 aataataataacaataatacaacaaa 267
||||||||||| ||||||||||||||
Sbjct: 451 aataataataataataatacaacaaa 476


Score = 30.2 bits (15), Expect = 5.2
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 242 aataataataacaataata 260
||||||||||| |||||||
Sbjct: 675 aataataataataataata 693


Score = 30.2 bits (15), Expect = 5.2
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 242 aataataataacaataata 260
||||||||||| |||||||
Sbjct: 448 aataataataataataata 466


Score = 30.2 bits (15), Expect = 5.2
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 242 aataataataacaataata 260
||||||||||| |||||||
Sbjct: 678 aataataataataataata 696


Score = 30.2 bits (15), Expect = 5.2
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 242 aataataataacaataata 260
||||||||||| |||||||
Sbjct: 445 aataataataataataata 463


Score = 30.2 bits (15), Expect = 5.2
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 242 aataataataacaataata 260
||||||||||| |||||||
Sbjct: 681 aataataataataataata 699


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,464
Number of Sequences: 8402
Number of extensions: 60464
Number of successful extensions: 27528
Number of sequences better than 10.0: 1903
length of query: 847
length of database: 8,075,542
effective HSP length: 16
effective length of query: 831
effective length of database: 7,941,110
effective search space: 6599062410
effective search space used: 6599062410
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.11
Homology vs DNA
Query= Contig-U15087-1 (Contig-U15087-1Q) /CSM_Contig/Contig-U15087-1Q.Seq.d
(847 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU269534) Dictyostelium discoideum vegetative cDNA clone:VS... 351 e-135 4
(C22914) Dictyostelium discoideum gamete cDNA, clone FC-AA12. 351 e-131 3
(AU269535) Dictyostelium discoideum vegetative cDNA clone:VS... 343 e-110 3
(AU263241) Dictyostelium discoideum vegetative cDNA clone:VS... 38 0.014 3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 44 0.015 3
(CU695198) Zebrafish DNA sequence from clone CH1073-381M4 in... 50 0.020 2
(AY191012) Dictyostelium discoideum autophagy protein 5 (apg... 38 0.050 2
(CR589884) Zebrafish DNA sequence from clone CH211-206L14 in... 46 0.076 3
(AC116919) Dictyostelium discoideum chromosome 2 map complem... 42 0.076 2
(AB030033) Dictyostelium discoideum gene for AmiB, complete ... 42 0.076 2
(BX000366) Zebrafish DNA sequence from clone CH211-204I4. 42 0.078 2
(AL953871) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.078 2
(CF438955) EST675300 normalized cDNA library of onion Allium... 40 0.081 2
(DU053422) 141360 Tomato HindIII BAC Library Solanum lycoper... 42 0.11 2
(DY036785) zfi02-12ms1-b15 Zfi02 Zamia fischeri cDNA clone z... 38 0.11 3
(BX133816) Danio rerio genomic clone DKEY-89F8, genomic surv... 42 0.11 2
(AZ932270) 474.dhz96g05.s1 Saccharomyces unisporus NRRL Y-15... 50 0.14 1
(ED412273) AUAC-aaa97h06.g1 Ascaris suum whole genome shotgu... 50 0.14 1
(AF052006) Dictyostelium discoideum C-module-binding factor ... 38 0.17 3
(BB898639) Macaca fascicularis cDNA clone: Qlv-U246A-E5, 3'e... 40 0.18 2
(CU459194) Zebrafish DNA sequence from clone CH73-313L22 in ... 42 0.18 2
(CT027747) Zebrafish DNA sequence from clone CH211-165F6 in ... 42 0.21 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 0.22 3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 0.22 2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 42 0.23 2
(CB930757) ri58g03.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo... 36 0.24 2
(AF153362) Dictyostelium discoideum adenylyl cyclase (acrA) ... 38 0.25 2
(AM431834) Vitis vinifera contig VV78X106747.9, whole genome... 38 0.26 2
(AF361947) Dictyostelium discoideum SgcA (sgcA) mRNA, comple... 42 0.26 2
(CR847851) Zebrafish DNA sequence from clone DKEYP-115D7 in ... 42 0.27 2
(BX244851) Danio rerio genomic clone DKEY-234L7, genomic sur... 38 0.29 2
(BX178255) Danio rerio genomic clone DKEY-173I9, genomic sur... 38 0.30 2
(AU039138) Dictyostelium discoideum slug cDNA, clone SSM436. 38 0.31 2
(CR391910) Zebrafish DNA sequence from clone DKEY-108F8 in l... 40 0.31 2
(FE119421) LV_HC_RA070H03f Litopenaeus vannamei hemocyte cDN... 40 0.31 2
(DE053035) Oryzias latipes DNA, clone: ola1-022L02.F, genomi... 44 0.32 2
(CZ742290) OC__Ba0088M02.f OC__Ba Oryza coarctata genomic cl... 42 0.32 2
(EI417211) PV_GBa0003F10.f PV_GBa Phaseolus vulgaris genomic... 36 0.33 2
(BJ000247) Oryzias latipes cDNA clone:MF01SSA013F04 : 5' end... 44 0.33 2
(AL748211) Danio rerio genomic clone DKEY-19D20, genomic sur... 38 0.33 2
(AM448073) Vitis vinifera contig VV78X195432.5, whole genome... 38 0.33 3
(DE070673) Oryzias latipes DNA, clone: ola1-168M12.F, genomi... 38 0.34 2
(CV181544) tai77a03.x1 Hydra EST UCI 5 ALP Hydra magnipapill... 38 0.35 2
(CZ710269) OC__Ba0031I15.r OC__Ba Oryza coarctata genomic cl... 42 0.35 2
(AF286894) Plasmodium falciparum clone CS016 microsatellite ... 36 0.36 2
(FF076674) G1045P319FB3.T0 Aplysia californica Pooled Normal... 46 0.38 2
(BJ445987) Dictyostelium discoideum cDNA clone:ddv61d10, 3' ... 44 0.38 2
(EY321162) CAWX7755.rev CAWX Helobdella robusta Primary Earl... 38 0.41 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.41 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 0.42 3
(EI454953) PV_GBa0056B10.f PV_GBa Phaseolus vulgaris genomic... 36 0.44 2
(EK181157) 1095458122459 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.47 2
(G38821) TA101 Plasmodium falciparum haploid Plasmodium falc... 36 0.47 2
(DY886882) CeleSEQ2705 Cunninghamella elegans pBluescript (E... 44 0.49 2
(EL502687) D07_PFLAB1-LARGE-PLATE12B.AB1 Blood stage Plasmod... 34 0.52 3
(BJ404946) Dictyostelium discoideum cDNA clone:dds30j04, 3' ... 38 0.53 3
(BX247827) Danio rerio genomic clone DKEY-234B3, genomic sur... 40 0.54 3
(CU467882) Zebrafish DNA sequence from clone DKEY-211B20 in ... 48 0.54 1
(BX571676) Zebrafish DNA sequence from clone DKEY-242N5 in l... 48 0.54 1
(AL714031) Zebrafish DNA sequence from clone BUSM1-60J23 in ... 48 0.54 1
(AL671894) Mouse DNA sequence from clone RP23-316M11 on chro... 48 0.54 1
(AC146723) Medicago truncatula chromosome 8 clone mth2-34n4,... 48 0.54 1
(AL135778) Human DNA sequence from clone RP1-119C5 on chromo... 48 0.54 1
(AC020602) Homo sapiens BAC clone RP11-461M18 from 2, comple... 48 0.54 1
(BZ758478) UP_546-10F_T7 RPCI11 Human Male BAC Library Homo ... 48 0.54 1
(BX229075) Danio rerio genomic clone DKEY-242N5, genomic sur... 48 0.54 1
(DC232769) Plasmodium berghei strain ANKA cDNA clone:SG02572... 48 0.54 1
(DC220928) Plasmodium berghei strain ANKA cDNA clone:MZ00342... 48 0.54 1
(DC218776) Plasmodium berghei strain ANKA cDNA clone:MZ00001... 48 0.54 1
(BX215524) Danio rerio genomic clone DKEY-251B18, genomic su... 34 0.55 3
(BV682382) GBL030403 Ensembl chicken genome sequences browse... 42 0.57 2
(CU855620) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.57 2
(AM676480) Entamoeba terrapinae GSS, clone terra120c05.p1k. 38 0.57 3
(CR936905) Zebrafish DNA sequence from clone CH211-257L20 in... 40 0.57 2
(BX890607) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.59 5
(FG756544) G1146P344RJ7.T0 Anolis carolinensis pooled normal... 32 0.65 3
(FE083065) LV_GL_RA23G06f Litopenaeus vannamei gills cDNA li... 36 0.65 2
(DB912013) Idiosepius paradoxus cDNA, clone:Ip_aB_005_B22, 5... 36 0.68 2
(AU062246) Dictyostelium discoideum slug cDNA, clone SLI670. 40 0.71 2
(M98854) Aplysia californica neuropeptide Y mRNA, complete cds. 46 0.74 2
(AM688401) Entamoeba terrapinae GSS, clone terra265f09.p1k. 38 0.74 3
(AZ312163) 1M0027D20R Mouse 10kb plasmid UUGC1M library Mus ... 42 0.75 2
(AU270653) Dictyostelium discoideum vegetative cDNA clone:VS... 42 0.75 2
(BX119908) Zebrafish DNA sequence from clone CH211-225A3 in ... 44 0.78 2
(CU302223) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.80 2
(BV728112) ha2057 Helianthus annuus Ha89 genomic fragments H... 42 0.81 2
(AL627132) Zebrafish DNA sequence from clone RP71-1H3 in lin... 42 0.85 3
(EB873389) 4878624 ZF03 Danio rerio cDNA clone 2151130, mRNA... 38 0.88 2
(CT675510) Danio rerio EST, clone ZF_mu_155l23 3'. 38 0.90 2
(AU061841) Dictyostelium discoideum slug cDNA, clone SLG290. 42 0.91 2
(L19349) Dictyostelium discoideum hydroxymethylglutaryl CoA ... 42 0.94 2
(DY891902) CeleSEQ8650 Cunninghamella elegans pBluescript (E... 36 0.95 2
(DX511444) 643_4_14167591_5489_43566_066 Arachis duranensis ... 38 0.95 2
(BJ325587) Dictyostelium discoideum cDNA clone:dda1c15, 5' e... 42 0.96 2
(CR855858) Zebrafish DNA sequence from clone CH211-113H5 in ... 40 0.96 2
(CU464112) Zebrafish DNA sequence from clone CH211-122M3 in ... 40 0.96 2
(BX942846) Zebrafish DNA sequence from clone CH211-265O15 in... 46 0.96 2
(AC172401) Strongylocentrotus purpuratus clone R3-14D24, WOR... 40 0.96 2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 40 0.96 2
(AF010514) Plasmodium falciparum microsatellite TA101 sequence. 36 1.00 2

>(AU269534) Dictyostelium discoideum vegetative cDNA clone:VSJ183,
5' end single read.
Length = 585

Score = 351 bits (177), Expect(4) = e-135
Identities = 177/177 (100%)
Strand = Plus / Plus


Query: 222 cagaattagcattaacagagaataataataacaataatacaacaaatggcgactcatccg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cagaattagcattaacagagaataataataacaataatacaacaaatggcgactcatccg 266


Query: 282 atgaagccttaattccaatgagtgatgatcaaccaaatccattaaaagattcttcaaata 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgaagccttaattccaatgagtgatgatcaaccaaatccattaaaagattcttcaaata 326


Query: 342 cacttcaaattgacgatggtgatgtttcagaaagatattctgatagtgtttcatctt 398
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacttcaaattgacgatggtgatgtttcagaaagatattctgatagtgtttcatctt 383

Score = 101 bits (51), Expect(4) = e-135
Identities = 51/51 (100%)
Strand = Plus / Plus


Query: 16 aaaaatggaaattaaagttttagctaaaagaaaagtatcagcaaaacgtgc 66
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaatggaaattaaagttttagctaaaagaaaagtatcagcaaaacgtgc 51

Score = 63.9 bits (32), Expect(4) = e-135
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 464 gatatcggatagttcaaactctactgaatctg 495
||||||||||||||||||||||||||||||||
Sbjct: 449 gatatcggatagttcaaactctactgaatctg 480

Score = 50.1 bits (25), Expect(4) = e-135
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 131 tcaggaaatgcaacaccaacagagg 155
|||||||||||||||||||||||||
Sbjct: 116 tcaggaaatgcaacaccaacagagg 140

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 421,293,553
Number of extensions: 35631746
Number of successful extensions: 7535745
Number of sequences better than 10.0: 1048
Length of query: 847
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 823
Effective length of database: 97,308,875,965
Effective search space: 80085204919195
Effective search space used: 80085204919195
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.14
Homology vs Protein
Query= Contig-U15087-1 (Contig-U15087-1Q) /CSM_Contig/Contig-U15087-1Q.Seq.d
(847 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

FM204884_1039(FM204884|pid:none) Streptococcus equi subsp. zooep... 36 1.4
FM204883_1005(FM204883|pid:none) Streptococcus equi subsp. equi ... 35 4.1
(Q1J6D8) RecName: Full=30S ribosomal protein S20; &(Q1JBK1) Rec... 33 9.1

>FM204884_1039(FM204884|pid:none) Streptococcus equi subsp.
zooepidemicus H70, complete genome.
Length = 82

Score = 36.2 bits (82), Expect = 1.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2

Query: 20 MEIKVLAKRKVSAKRANEILGKFILERKANEENRLFLSG--------NATPTEDLFQIVS 175
ME+K LA K + KRA L KANE+N S A PTE+LF+ S
Sbjct: 1 MEVKTLANIKSAIKRAE-------LNVKANEKNSAQKSAMRTAIKAFEANPTEELFRAAS 53

Query: 176 NSLNKFQN 199
+S++K Q+
Sbjct: 54 SSIDKAQS 61

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 536,459,011
Number of extensions: 7005544
Number of successful extensions: 21786
Number of sequences better than 10.0: 3
Number of HSP's gapped: 21757
Number of HSP's successfully gapped: 3
Length of query: 282
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 155
Effective length of database: 640,137,871
Effective search space: 99221370005
Effective search space used: 99221370005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.55 gvh: 0.32 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U15087-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0