Contig-U15087-1 |
Contig ID |
Contig-U15087-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
847 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
3488172 |
End point |
3487325 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U15087 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.11 |
Homology vs DNA |
Query= Contig-U15087-1 (Contig-U15087-1Q) /CSM_Contig/Contig-U15087-1Q.Seq.d (847 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU269534) Dictyostelium discoideum vegetative cDNA clone:VS... 351 e-135 4 (C22914) Dictyostelium discoideum gamete cDNA, clone FC-AA12. 351 e-131 3 (AU269535) Dictyostelium discoideum vegetative cDNA clone:VS... 343 e-110 3 (AU263241) Dictyostelium discoideum vegetative cDNA clone:VS... 38 0.014 3 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 44 0.015 3 (CU695198) Zebrafish DNA sequence from clone CH1073-381M4 in... 50 0.020 2 (AY191012) Dictyostelium discoideum autophagy protein 5 (apg... 38 0.050 2 (CR589884) Zebrafish DNA sequence from clone CH211-206L14 in... 46 0.076 3 (AC116919) Dictyostelium discoideum chromosome 2 map complem... 42 0.076 2 (AB030033) Dictyostelium discoideum gene for AmiB, complete ... 42 0.076 2 (BX000366) Zebrafish DNA sequence from clone CH211-204I4. 42 0.078 2 (AL953871) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.078 2 (CF438955) EST675300 normalized cDNA library of onion Allium... 40 0.081 2 (DU053422) 141360 Tomato HindIII BAC Library Solanum lycoper... 42 0.11 2 (DY036785) zfi02-12ms1-b15 Zfi02 Zamia fischeri cDNA clone z... 38 0.11 3 (BX133816) Danio rerio genomic clone DKEY-89F8, genomic surv... 42 0.11 2 (AZ932270) 474.dhz96g05.s1 Saccharomyces unisporus NRRL Y-15... 50 0.14 1 (ED412273) AUAC-aaa97h06.g1 Ascaris suum whole genome shotgu... 50 0.14 1 (AF052006) Dictyostelium discoideum C-module-binding factor ... 38 0.17 3 (BB898639) Macaca fascicularis cDNA clone: Qlv-U246A-E5, 3'e... 40 0.18 2 (CU459194) Zebrafish DNA sequence from clone CH73-313L22 in ... 42 0.18 2 (CT027747) Zebrafish DNA sequence from clone CH211-165F6 in ... 42 0.21 2 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 0.22 3 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 0.22 2 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 42 0.23 2 (CB930757) ri58g03.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo... 36 0.24 2 (AF153362) Dictyostelium discoideum adenylyl cyclase (acrA) ... 38 0.25 2 (AM431834) Vitis vinifera contig VV78X106747.9, whole genome... 38 0.26 2 (AF361947) Dictyostelium discoideum SgcA (sgcA) mRNA, comple... 42 0.26 2 (CR847851) Zebrafish DNA sequence from clone DKEYP-115D7 in ... 42 0.27 2 (BX244851) Danio rerio genomic clone DKEY-234L7, genomic sur... 38 0.29 2 (BX178255) Danio rerio genomic clone DKEY-173I9, genomic sur... 38 0.30 2 (AU039138) Dictyostelium discoideum slug cDNA, clone SSM436. 38 0.31 2 (CR391910) Zebrafish DNA sequence from clone DKEY-108F8 in l... 40 0.31 2 (FE119421) LV_HC_RA070H03f Litopenaeus vannamei hemocyte cDN... 40 0.31 2 (DE053035) Oryzias latipes DNA, clone: ola1-022L02.F, genomi... 44 0.32 2 (CZ742290) OC__Ba0088M02.f OC__Ba Oryza coarctata genomic cl... 42 0.32 2 (EI417211) PV_GBa0003F10.f PV_GBa Phaseolus vulgaris genomic... 36 0.33 2 (BJ000247) Oryzias latipes cDNA clone:MF01SSA013F04 : 5' end... 44 0.33 2 (AL748211) Danio rerio genomic clone DKEY-19D20, genomic sur... 38 0.33 2 (AM448073) Vitis vinifera contig VV78X195432.5, whole genome... 38 0.33 3 (DE070673) Oryzias latipes DNA, clone: ola1-168M12.F, genomi... 38 0.34 2 (CV181544) tai77a03.x1 Hydra EST UCI 5 ALP Hydra magnipapill... 38 0.35 2 (CZ710269) OC__Ba0031I15.r OC__Ba Oryza coarctata genomic cl... 42 0.35 2 (AF286894) Plasmodium falciparum clone CS016 microsatellite ... 36 0.36 2 (FF076674) G1045P319FB3.T0 Aplysia californica Pooled Normal... 46 0.38 2 (BJ445987) Dictyostelium discoideum cDNA clone:ddv61d10, 3' ... 44 0.38 2 (EY321162) CAWX7755.rev CAWX Helobdella robusta Primary Earl... 38 0.41 2 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.41 3 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 0.42 3 (EI454953) PV_GBa0056B10.f PV_GBa Phaseolus vulgaris genomic... 36 0.44 2 (EK181157) 1095458122459 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.47 2 (G38821) TA101 Plasmodium falciparum haploid Plasmodium falc... 36 0.47 2 (DY886882) CeleSEQ2705 Cunninghamella elegans pBluescript (E... 44 0.49 2 (EL502687) D07_PFLAB1-LARGE-PLATE12B.AB1 Blood stage Plasmod... 34 0.52 3 (BJ404946) Dictyostelium discoideum cDNA clone:dds30j04, 3' ... 38 0.53 3 (BX247827) Danio rerio genomic clone DKEY-234B3, genomic sur... 40 0.54 3 (CU467882) Zebrafish DNA sequence from clone DKEY-211B20 in ... 48 0.54 1 (BX571676) Zebrafish DNA sequence from clone DKEY-242N5 in l... 48 0.54 1 (AL714031) Zebrafish DNA sequence from clone BUSM1-60J23 in ... 48 0.54 1 (AL671894) Mouse DNA sequence from clone RP23-316M11 on chro... 48 0.54 1 (AC146723) Medicago truncatula chromosome 8 clone mth2-34n4,... 48 0.54 1 (AL135778) Human DNA sequence from clone RP1-119C5 on chromo... 48 0.54 1 (AC020602) Homo sapiens BAC clone RP11-461M18 from 2, comple... 48 0.54 1 (BZ758478) UP_546-10F_T7 RPCI11 Human Male BAC Library Homo ... 48 0.54 1 (BX229075) Danio rerio genomic clone DKEY-242N5, genomic sur... 48 0.54 1 (DC232769) Plasmodium berghei strain ANKA cDNA clone:SG02572... 48 0.54 1 (DC220928) Plasmodium berghei strain ANKA cDNA clone:MZ00342... 48 0.54 1 (DC218776) Plasmodium berghei strain ANKA cDNA clone:MZ00001... 48 0.54 1 (BX215524) Danio rerio genomic clone DKEY-251B18, genomic su... 34 0.55 3 (BV682382) GBL030403 Ensembl chicken genome sequences browse... 42 0.57 2 (CU855620) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.57 2 (AM676480) Entamoeba terrapinae GSS, clone terra120c05.p1k. 38 0.57 3 (CR936905) Zebrafish DNA sequence from clone CH211-257L20 in... 40 0.57 2 (BX890607) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.59 5 (FG756544) G1146P344RJ7.T0 Anolis carolinensis pooled normal... 32 0.65 3 (FE083065) LV_GL_RA23G06f Litopenaeus vannamei gills cDNA li... 36 0.65 2 (DB912013) Idiosepius paradoxus cDNA, clone:Ip_aB_005_B22, 5... 36 0.68 2 (AU062246) Dictyostelium discoideum slug cDNA, clone SLI670. 40 0.71 2 (M98854) Aplysia californica neuropeptide Y mRNA, complete cds. 46 0.74 2 (AM688401) Entamoeba terrapinae GSS, clone terra265f09.p1k. 38 0.74 3 (AZ312163) 1M0027D20R Mouse 10kb plasmid UUGC1M library Mus ... 42 0.75 2 (AU270653) Dictyostelium discoideum vegetative cDNA clone:VS... 42 0.75 2 (BX119908) Zebrafish DNA sequence from clone CH211-225A3 in ... 44 0.78 2 (CU302223) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.80 2 (BV728112) ha2057 Helianthus annuus Ha89 genomic fragments H... 42 0.81 2 (AL627132) Zebrafish DNA sequence from clone RP71-1H3 in lin... 42 0.85 3 (EB873389) 4878624 ZF03 Danio rerio cDNA clone 2151130, mRNA... 38 0.88 2 (CT675510) Danio rerio EST, clone ZF_mu_155l23 3'. 38 0.90 2 (AU061841) Dictyostelium discoideum slug cDNA, clone SLG290. 42 0.91 2 (L19349) Dictyostelium discoideum hydroxymethylglutaryl CoA ... 42 0.94 2 (DY891902) CeleSEQ8650 Cunninghamella elegans pBluescript (E... 36 0.95 2 (DX511444) 643_4_14167591_5489_43566_066 Arachis duranensis ... 38 0.95 2 (BJ325587) Dictyostelium discoideum cDNA clone:dda1c15, 5' e... 42 0.96 2 (CR855858) Zebrafish DNA sequence from clone CH211-113H5 in ... 40 0.96 2 (CU464112) Zebrafish DNA sequence from clone CH211-122M3 in ... 40 0.96 2 (BX942846) Zebrafish DNA sequence from clone CH211-265O15 in... 46 0.96 2 (AC172401) Strongylocentrotus purpuratus clone R3-14D24, WOR... 40 0.96 2 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 40 0.96 2 (AF010514) Plasmodium falciparum microsatellite TA101 sequence. 36 1.00 2
>(AU269534) Dictyostelium discoideum vegetative cDNA clone:VSJ183, 5' end single read. Length = 585
Score = 351 bits (177), Expect(4) = e-135 Identities = 177/177 (100%) Strand = Plus / Plus
Query: 222 cagaattagcattaacagagaataataataacaataatacaacaaatggcgactcatccg 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 cagaattagcattaacagagaataataataacaataatacaacaaatggcgactcatccg 266
Query: 282 atgaagccttaattccaatgagtgatgatcaaccaaatccattaaaagattcttcaaata 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 atgaagccttaattccaatgagtgatgatcaaccaaatccattaaaagattcttcaaata 326
Query: 342 cacttcaaattgacgatggtgatgtttcagaaagatattctgatagtgtttcatctt 398 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 cacttcaaattgacgatggtgatgtttcagaaagatattctgatagtgtttcatctt 383
Score = 101 bits (51), Expect(4) = e-135 Identities = 51/51 (100%) Strand = Plus / Plus
Query: 16 aaaaatggaaattaaagttttagctaaaagaaaagtatcagcaaaacgtgc 66 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 aaaaatggaaattaaagttttagctaaaagaaaagtatcagcaaaacgtgc 51
Score = 63.9 bits (32), Expect(4) = e-135 Identities = 32/32 (100%) Strand = Plus / Plus
Query: 464 gatatcggatagttcaaactctactgaatctg 495 |||||||||||||||||||||||||||||||| Sbjct: 449 gatatcggatagttcaaactctactgaatctg 480
Score = 50.1 bits (25), Expect(4) = e-135 Identities = 25/25 (100%) Strand = Plus / Plus
Query: 131 tcaggaaatgcaacaccaacagagg 155 ||||||||||||||||||||||||| Sbjct: 116 tcaggaaatgcaacaccaacagagg 140
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 421,293,553 Number of extensions: 35631746 Number of successful extensions: 7535745 Number of sequences better than 10.0: 1048 Length of query: 847 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 823 Effective length of database: 97,308,875,965 Effective search space: 80085204919195 Effective search space used: 80085204919195 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.14 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
0 |