| Contig-U15078-1 |
| Contig ID |
Contig-U15078-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
702 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
2442998 |
| End point |
2442386 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U15078 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 1.11 |
| Homology vs DNA |
Query= Contig-U15078-1 (Contig-U15078-1Q) /CSM_Contig/Contig-U15078-1Q.Seq.d
(702 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ379274) Dictyostelium discoideum cDNA clone:ddc34f11, 3' ... 1332 0.0 2
(C92415) Dictyostelium discoideum slug cDNA, clone SSE882. 1259 0.0 2
(C92401) Dictyostelium discoideum slug cDNA, clone SSE760. 1217 0.0 2
(AU038827) Dictyostelium discoideum slug cDNA, clone SSL531. 1094 0.0 2
(C92627) Dictyostelium discoideum slug cDNA, clone SSF545. 1088 0.0 2
(C92226) Dictyostelium discoideum slug cDNA, clone SSD258. 1080 0.0 2
(C92606) Dictyostelium discoideum slug cDNA, clone SSF304. 630 0.0 3
(C93949) Dictyostelium discoideum slug cDNA, clone SSL895. 591 0.0 4
(C25645) Dictyostelium discoideum slug cDNA, clone SSA866. 940 0.0 2
(C92032) Dictyostelium discoideum slug cDNA, clone SSC184. 890 0.0 2
(C94156) Dictyostelium discoideum slug cDNA, clone SSG475. 890 0.0 2
(BJ365155) Dictyostelium discoideum cDNA clone:ddc34f11, 5' ... 898 0.0 1
(C90249) Dictyostelium discoideum slug cDNA, clone SSI464. 882 0.0 1
(AU037673) Dictyostelium discoideum slug cDNA, clone SSE160. 860 0.0 2
(C94375) Dictyostelium discoideum slug cDNA, clone SSF577. 781 0.0 2
(C92855) Dictyostelium discoideum slug cDNA, clone SSF508. 571 e-164 2
(AU038390) Dictyostelium discoideum slug cDNA, clone SSH652. 537 e-154 2
(C90942) Dictyostelium discoideum slug cDNA, clone SSJ335. 385 e-136 8
(AU037217) Dictyostelium discoideum slug cDNA, clone SSB623. 444 e-126 2
(C92065) Dictyostelium discoideum slug cDNA, clone SSC136. 369 e-104 2
(AU073248) Dictyostelium discoideum slug cDNA, clone SSG486. 351 2e-92 1
(AU038846) Dictyostelium discoideum slug cDNA, clone SSL554. 311 9e-87 2
(AU037623) Dictyostelium discoideum slug cDNA, clone SSD865. 301 8e-84 2
(AU072517) Dictyostelium discoideum slug cDNA, clone SSE768. 246 9e-61 1
(AU072714) Dictyostelium discoideum slug cDNA, clone SSA584. 224 3e-54 1
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 40 1e-04 19
(AC179739) Strongylocentrotus purpuratus clone R3-1018H15, W... 50 0.001 3
(CU915362) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 30 0.015 3
(ET204470) MUGQ_CH252P401E06Sp6_CP764_027 CHORI-252 Vervet M... 52 0.029 1
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.034 8
(AM460098) Vitis vinifera contig VV78X022042.3, whole genome... 38 0.080 3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.11 11
(AC173375) Strongylocentrotus purpuratus clone R3-14D23, WOR... 50 0.11 1
(AC173371) Strongylocentrotus purpuratus clone R3-14D2, WORK... 50 0.11 1
(AC168580) Strongylocentrotus purpuratus clone R3-3065H7, WO... 50 0.11 1
(AC168527) Strongylocentrotus purpuratus clone R3-3091P24, W... 50 0.11 1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.17 14
(AC200457) Pan troglodytes BAC clone CH251-388C2 from chromo... 34 0.21 9
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 0.26 10
(AM433396) Vitis vinifera contig VV78X237045.20, whole genom... 38 0.30 3
(AC004911) Homo sapiens PAC clone RP5-870F17 from 7, complet... 34 0.32 8
(ET915675) CHO_OF205xm08r1.ab1 CHO_OF Nicotiana tabacum geno... 44 0.43 2
(DQ467785) Lynceus sp. 'Australia, NT' 16S ribosomal RNA gen... 48 0.45 1
(ED933736) OA_CBa0137J05.f OA_CBa Oryza australiensis genomi... 48 0.45 1
(DX000751) OG_ABa0120O05.r OG_ABa Oryza granulata genomic cl... 48 0.45 1
(CG754333) P049-3-H11.za Ppa EcoRI BAC Library Pristionchus ... 48 0.45 1
(AC117202) Mus musculus BAC clone RP23-248L5 from 14, comple... 38 0.46 7
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 0.61 9
(AC150299) Carollia perspicillata clone 309L9, complete sequ... 40 0.68 3
(AC023765) Homo sapiens chromosome 4 clone RP11-499N1 map 4,... 34 0.81 6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.91 13
(AC172471) Bos taurus clone CH240-308K21, WORKING DRAFT SEQU... 32 0.94 2
(AY562383) Leptorhynchoides thecatus mitochondrion, complete... 44 1.0 2
(CT963108) Medicago truncatula chromosome 5 clone mth4-37c5,... 36 1.1 8
(ED156854) AUAC-aai38h09.b1 Ascaris suum whole genome shotgu... 38 1.1 2
(BX649381) Mouse DNA sequence from clone RP23-245K23 on chro... 36 1.1 5
(AC027144) Homo sapiens chromosome 12 clone RP11-141I1 map 1... 36 1.2 9
(CP000866) Nitrosopumilus maritimus SCM1, complete genome. 32 1.3 16
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 30 1.3 12
(AC004157) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 1.5 7
(AL137794) Human DNA sequence from clone RP5-1070A16 on chro... 38 1.6 3
(CP000361) Arcobacter butzleri RM4018, complete genome. 36 1.7 17
(BX469886) Zebrafish DNA sequence from clone CH211-127D20 in... 46 1.8 1
(U43839) Glycine max choline kinase GmCK2p mRNA, complete cds. 46 1.8 1
(M74000) Brugia malayi myosin heavy chain gene, complete cds. 46 1.8 1
(L01625) Brugia malayi mRNA sequence. 46 1.8 1
(AC004447) Homo sapiens chromosome 19, overlapping cosmids R... 46 1.8 1
(AC003038) Human DNA from chromosome 19-specific cosmid R309... 46 1.8 1
(AC135339) Homo sapiens chromosome 15 clone RP13-40N6 map 15... 46 1.8 1
(AC133843) Rattus norvegicus clone CH230-51B8, WORKING DRAFT... 46 1.8 1
(AC126000) Rattus norvegicus clone CH230-34N21, *** SEQUENCI... 46 1.8 1
(AC112306) Rattus norvegicus clone CH230-255H7, *** SEQUENCI... 46 1.8 1
(AC112289) Rattus norvegicus clone CH230-140E16, *** SEQUENC... 46 1.8 1
(CU928835) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.8 1
(CU915421) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.8 1
(AC179969) Strongylocentrotus purpuratus clone R3-20D11, WOR... 46 1.8 1
(AC177755) Strongylocentrotus purpuratus clone R3-1005O14, W... 46 1.8 1
(BH001574) BMBAC01E11T7_PSU Brugia malayi Genomic Bac Librar... 46 1.8 1
(EJ712716) 1092956087860 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1
(EJ679811) 1092955119927 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1
(ED992623) MUGQ_CH252P163B01T7_CN195_015 CHORI-252 Vervet Mo... 46 1.8 1
(DE360762) Bombyx mori genomic DNA, BAC clone:BET_095_E19. 46 1.8 1
(CU815452) A BAC library has been constructed from PN40024 g... 46 1.8 1
(EH014938) USDA-FP_187588 Lysiphlebus testaceipes adult whol... 46 1.8 1
(CK850094) SWWbL3CAW16A11SK Wuchereria bancrofti L3 cDNA (SA... 46 1.8 1
(BM520477) sak94g01.y1 Gm-c1057 Glycine soja cDNA clone SOYB... 46 1.8 1
(BM520416) sak93g01.y1 Gm-c1057 Glycine soja cDNA clone SOYB... 46 1.8 1
(AC189420) Brassica rapa subsp. pekinensis clone KBrB063K02,... 36 1.8 4
(AC083896) Homo sapiens chromosome RPCI-6 clone RP6-194K9, W... 38 1.8 3
(AC221720) Bos taurus clone CH240-387D6, WORKING DRAFT SEQUE... 42 2.0 6
(AC198052) Pongo abelii BAC clone CH276-130O12 from chromoso... 38 2.0 6
(CT009742) Mouse DNA sequence from clone RP23-306D19 on chro... 38 2.0 5
(AC008130) Homo sapiens chromosome 4, *** SEQUENCING IN PROG... 44 2.1 4
(BX936320) Zebrafish DNA sequence from clone CH211-112L17 in... 40 2.1 5
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 32 2.3 11
(BX548174) Prochlorococcus marinus MED4 complete genome. 38 2.4 15
(AY792165) Ceratitis rosa isolate 8 mitochondrial NADH dehyd... 42 2.5 2
(AY792167) Ceratitis rosa isolate 14 mitochondrial NADH dehy... 42 2.5 2
(AY792166) Ceratitis rosa isolate 9 mitochondrial NADH dehyd... 42 2.5 2
(AC188946) Gallus gallus BAC clone CH261-68C18 from chromoso... 36 2.6 5
>(BJ379274) Dictyostelium discoideum cDNA clone:ddc34f11, 3' end,
single read.
Length = 702
Score = 1332 bits (672), Expect(2) = 0.0
Identities = 672/672 (100%)
Strand = Plus / Minus
Query: 1 atgttatgcatcaaatttagatagcataaaagcaaatccaacagaatgtgaagcatgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atgttatgcatcaaatttagatagcataaaagcaaatccaacagaatgtgaagcatgtca 643
Query: 61 aattgttattggttatgttgaaaatttggtattacatagtaataaaactcaaggtgaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aattgttattggttatgttgaaaatttggtattacatagtaataaaactcaaggtgaaat 583
Query: 121 tgaaaaagaacttgataaattgtgtaatatggtttctccacgttataaaccaacatgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgaaaaagaacttgataaattgtgtaatatggtttctccacgttataaaccaacatgtga 523
Query: 181 tagcattgtttctgtatacacaactgaaattatacaattaattttaaataaagaaacacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tagcattgtttctgtatacacaactgaaattatacaattaattttaaataaagaaacacc 463
Query: 241 ggatttaatttgtaaagagataaaagtatgtacaactgaatgggaaattaatacaacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggatttaatttgtaaagagataaaagtatgtacaactgaatgggaaattaatacaacaaa 403
Query: 301 attattttcaaaaattactgaaattgccatgaaagaaattcattcagtagctcaaaaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 attattttcaaaaattactgaaattgccatgaaagaaattcattcagtagctcaaaaatc 343
Query: 361 aaaatcacatcaattaactcaaaataatttaagatctacaagtgagtgtgaaatttgtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaaatcacatcaattaactcaaaataatttaagatctacaagtgagtgtgaaatttgtca 283
Query: 421 agtatttgttagtaaattggaatcatatatttcaacaaataaatcacaagaagaaataat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agtatttgttagtaaattggaatcatatatttcaacaaataaatcacaagaagaaataat 223
Query: 481 ggaagaattagataatgcctgtgattatatgaagagttttgaacaacaatgtaaacaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagaattagataatgcctgtgattatatgaagagttttgaacaacaatgtaaacaaat 163
Query: 541 ggttcaagattatgtcccagaattaattgaaatcatgtccactactgaagaccctaataa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ggttcaagattatgtcccagaattaattgaaatcatgtccactactgaagaccctaataa 103
Query: 601 agtttgttcccaaatttccttatgtccaaatgacctatcttctaaaaatgaatcaaaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 agtttgttcccaaatttccttatgtccaaatgacctatcttctaaaaatgaatcaaaaaa 43
Query: 661 tcaaagactttt 672
||||||||||||
Sbjct: 42 tcaaagactttt 31
Score = 42.1 bits (21), Expect(2) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 682 cataatcaattaataaattat 702
|||||||||||||||||||||
Sbjct: 21 cataatcaattaataaattat 1
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,011,378,045
Number of extensions: 66148068
Number of successful extensions: 5793006
Number of sequences better than 10.0: 281
Length of query: 702
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 678
Effective length of database: 97,308,875,965
Effective search space: 65975417904270
Effective search space used: 65975417904270
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.14 |
| Homology vs Protein |
Query= Contig-U15078-1 (Contig-U15078-1Q) /CSM_Contig/Contig-U15078-1Q.Seq.d
(702 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v... 99 1e-19
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (... 99 1e-19
CR861454_1(CR861454|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1... 99 1e-19
M60258_1(M60258|pid:none) Human mutant cerebroside sulfate activ... 99 1e-19
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains: Rec... 99 1e-19
M60257_1(M60257|pid:none) Human mutant cerebroside sulfate activ... 99 1e-19
X57108_1(X57108|pid:none) Human gene for cerebroside sulfate act... 99 1e-19
AY892719_1(AY892719|pid:none) Synthetic construct Homo sapiens c... 99 1e-19
CR861144_1(CR861144|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 99 2e-19
AK299184_1(AK299184|pid:none) Homo sapiens cDNA FLJ54136 complet... 98 3e-19
CR456746_1(CR456746|pid:none) Homo sapiens full open reading fra... 97 4e-19
BC105409_1(BC105409|pid:none) Bos taurus prosaposin, mRNA (cDNA ... 97 6e-19
(P10960) RecName: Full=Sulfated glycoprotein 1; Short=S... 92 2e-17
BC061759_1(BC061759|pid:none) Rattus norvegicus prosaposin, mRNA... 92 2e-17
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei... 90 6e-17
AB169527_1(AB169527|pid:none) Macaca fascicularis brain cDNA, cl... 90 8e-17
AY815893_1(AY815893|pid:none) Schistosoma japonicum SJCHGC01869 ... 89 1e-16
AK167073_1(AK167073|pid:none) Mus musculus blastocyst blastocyst... 89 1e-16
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210... 88 3e-16
AK167719_1(AK167719|pid:none) Mus musculus 15 days pregnant adul... 87 5e-16
(Q61207) RecName: Full=Sulfated glycoprotein 1; Short=S... 87 5e-16
AK159722_1(AK159722|pid:none) Mus musculus osteoclast-like cell ... 87 5e-16
AK153404_1(AK153404|pid:none) Mus musculus bone marrow macrophag... 87 5e-16
AK088369_1(AK088369|pid:none) Mus musculus 2 days neonate thymus... 87 5e-16
AK149785_1(AK149785|pid:none) Mus musculus bone marrow macrophag... 87 5e-16
AK152280_1(AK152280|pid:none) Mus musculus bone marrow macrophag... 87 5e-16
AK167902_1(AK167902|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 87 5e-16
AK159164_1(AK159164|pid:none) Mus musculus osteoclast-like cell ... 87 5e-16
AK159634_1(AK159634|pid:none) Mus musculus osteoclast-like cell ... 87 5e-16
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167... 87 5e-16
AB170870_1(AB170870|pid:none) Macaca fascicularis brain cDNA clo... 87 6e-16
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ... 86 8e-16
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA... 86 8e-16
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu... 86 8e-16
FN357292_36(FN357292|pid:none) Schistosoma mansoni genome sequen... 86 1e-15
U57999_1(U57999|pid:none) Mus musculus prosaposin (psap\SGP-1) g... 86 1e-15
S71616_1(S71616|pid:none) prosaposin [mice, mRNA, 2593 nt]. 86 1e-15
AX704807_1(AX704807|pid:none) Sequence 39 from Patent WO03014151. 85 2e-15
U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m... 85 2e-15
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147... 84 3e-15
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m... 84 3e-15
AB170090_1(AB170090|pid:none) Macaca fascicularis brain cDNA clo... 84 4e-15
AF196308_1(AF196308|pid:none) Naegleria fowleri naegleriapore A ... 83 7e-15
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com... 82 2e-14
(O13035) RecName: Full=Proactivator polypeptide; Contains: Rec... 82 2e-14
AB008449_1(AB008449|pid:none) Bombyx mori mRNA for BmP109, compl... 80 6e-14
DQ062781_1(DQ062781|pid:none) Drosophila simulans saposin-relate... 79 1e-13
AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom... 78 3e-13
AC116956_84(AC116956|pid:none) Dictyostelium discoideum chromoso... 75 1e-12
AF196309_1(AF196309|pid:none) Naegleria fowleri naegleriapore B ... 75 1e-12
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ... 75 3e-12
AF175768_1(AF175768|pid:none) Dictyostelium discoideum SAPLIP C ... 67 5e-10
DQ363441_1(DQ363441|pid:none) Ictalurus punctatus clone C111BF07... 66 9e-10
AF162129_1(AF162129|pid:none) Drosophila melanogaster ecdysone d... 65 2e-09
BC119540_1(BC119540|pid:none) Mus musculus prosaposin-like 1, mR... 64 3e-09
CR859906_1(CR859906|pid:none) Pongo abelii mRNA; cDNA DKFZp468M2... 64 3e-09
(Q8C1C1) RecName: Full=Proactivator polypeptide-like 1; Contains... 64 3e-09
BC091483_1(BC091483|pid:none) Homo sapiens prosaposin, mRNA (cDN... 64 4e-09
(Q6NUJ1) RecName: Full=Proactivator polypeptide-like 1; Contains... 64 6e-09
BC068579_1(BC068579|pid:none) Homo sapiens prosaposin-like 1, mR... 64 6e-09
BC155325_1(BC155325|pid:none) Danio rerio cDNA clone IMAGE:70680... 64 6e-09
CT033825_6(CT033825|pid:none) Zebrafish DNA sequence from clone ... 64 6e-09
EU441799_1(EU441799|pid:none) Xenopus borealis clone Psap.a3 pro... 60 6e-08
U40797_4(U40797|pid:none) Caenorhabditis elegans cosmid C28C12, ... 60 6e-08
T15674(T15674)hypothetical protein C28C12.7 - Caenorhabditis ele... 60 6e-08
U40797_3(U40797|pid:none) Caenorhabditis elegans cosmid C28C12, ... 60 6e-08
DQ071890_1(DQ071890|pid:none) Trichomonas vaginalis saposin-like... 60 8e-08
AY184216_1(AY184216|pid:none) Danio rerio NK lysin-like protein ... 59 1e-07
AY811214_1(AY811214|pid:none) Schistosoma japonicum clone SJCHGC... 59 1e-07
DQ153190_1(DQ153190|pid:none) Ictalurus punctatus NK-lysin type ... 59 2e-07
DQ153187_1(DQ153187|pid:none) Ictalurus punctatus NK-lysin type ... 58 3e-07
EU960507_1(EU960507|pid:none) Zea mays clone 225521 surfactant p... 56 1e-06
BC149798_1(BC149798|pid:none) Bos taurus prosaposin-like 1, mRNA... 55 2e-06
AL132968_11(AL132968|pid:none) Arabidopsis thaliana DNA chromoso... 55 2e-06
S21770(S21770)saposin-C - bovine 55 2e-06
AY485648_1(AY485648|pid:none) Trichinella spiralis prosaposin mR... 55 3e-06
S47096(S47096)cynarase (EC 3.4.23.-) - cardoon 55 3e-06
T12049(T12049) cyprosin (EC 3.4.23.-) - cardoon (fragment) &X69... 55 3e-06
(P20097) RecName: Full=Saposin-C; AltName: Full=Co-beta-glucosid... 54 4e-06
AP008218_63(AP008218|pid:none) Oryza sativa (japonica cultivar-g... 54 5e-06
(P22355) RecName: Full=Pulmonary surfactant-associated protein B... 53 1e-05
AJ719872_1(AJ719872|pid:none) Gallus gallus mRNA for hypothetica... 52 1e-05
BT042292_1(BT042292|pid:none) Zea mays full-length cDNA clone ZM... 52 1e-05
BC072466_1(BC072466|pid:none) Rattus norvegicus surfactant prote... 52 2e-05
BT087433_1(BT087433|pid:none) Zea mays full-length cDNA clone ZM... 50 9e-05
BT034142_1(BT034142|pid:none) Zea mays full-length cDNA clone ZM... 50 9e-05
(P40782) RecName: Full=Cyprosin; EC=3.4.23.-; Flags: Pr... 50 9e-05
D32144_1(D32144|pid:none) Rice mRNA for aspartic protease, compl... 49 1e-04
DQ841161_1(DQ841161|pid:none) Xenopus laevis surfactant protein ... 49 1e-04
(Q42456) RecName: Full=Aspartic proteinase oryzasin-1; ... 49 1e-04
S49349(S49349) cyprosin (EC 3.4.23.-) - cardoon &X81984_1(X8198... 49 1e-04
M16764_1(M16764|pid:none) Human pulmonary surfactant-associated ... 49 1e-04
AF220198_1(AF220198|pid:none) Vitis riparia putative protein mRN... 49 1e-04
BC170328_1(BC170328|pid:none) Xenopus laevis surfactant protein ... 49 1e-04
BC123315_1(BC123315|pid:none) Xenopus laevis hypothetical protei... 49 1e-04
(P42210) RecName: Full=Phytepsin; EC=3.4.23.40; AltName... 49 2e-04
U40853_1(U40853|pid:none) Oryctolagus cuniculus pulmonary surfac... 48 3e-04
AB090278_1(AB090278|pid:none) Dugesia ryukyuensis Dryg mRNA for ... 48 3e-04
DQ666082_1(DQ666082|pid:none) Artemia franciscana clone 13RP1.05... 48 3e-04
AB045893_1(AB045893|pid:none) Nepenthes alata NaAP3 mRNA for asp... 47 4e-04
LNHUB(A31361;A28461;A27794;A27592;JU0162;S21134)pulmonary surfac... 47 4e-04
EU960771_1(EU960771|pid:none) Zea mays clone 228459 aspartic pro... 47 4e-04
Y09123_1(Y09123|pid:none) C.calcitrapa mRNA for aspartic protein... 47 6e-04
AJ313384_1(AJ313384|pid:none) Theobroma cacao mRNA for aspartic ... 47 6e-04
(Q29075) RecName: Full=Antimicrobial peptide NK-lysin; ... 47 6e-04
(P07988) RecName: Full=Pulmonary surfactant-associated protein B... 47 6e-04
BT062875_1(BT062875|pid:none) Zea mays full-length cDNA clone ZM... 47 6e-04
M19097_1(M19097|pid:none) Human pulmonary surfactant apoprotein ... 47 6e-04
DQ153189_1(DQ153189|pid:none) Ictalurus punctatus NK-lysin type ... 47 7e-04
DQ153186_1(DQ153186|pid:none) Ictalurus punctatus NK-lysin type ... 47 7e-04
EU968024_1(EU968024|pid:none) Zea mays clone 312992 aspartic pro... 46 0.001
AB219968_1(AB219968|pid:none) Triticum aestivum WAP1 mRNA for as... 46 0.001
FN359295_2(FN359295|pid:none) Schistosoma mansoni genome sequenc... 46 0.001
BX537304_6(BX537304|pid:none) Zebrafish DNA sequence from clone ... 46 0.001
AY814614_1(AY814614|pid:none) Schistosoma japonicum SJCHGC02459 ... 46 0.001
EZ000561_1(EZ000561|pid:none) TSA: Culex tarsalis Ctar-515 sapos... 46 0.001
AJ237674_1(AJ237674|pid:none) Cynara cardunculus mRNA for prepro... 46 0.001
AB025359_1(AB025359|pid:none) Helianthus annuus mRNA for asparti... 46 0.001
BC111910_1(BC111910|pid:none) Mus musculus surfactant associated... 46 0.001
EF676352_1(EF676352|pid:none) Picea sitchensis clone WS02732_P05... 45 0.002
EF678577_1(EF678577|pid:none) Picea sitchensis clone WS02928_J09... 45 0.002
AJ132884_1(AJ132884|pid:none) Cynara cardunculus mRNA for prepro... 45 0.002
AY253925_1(AY253925|pid:none) Entamoeba invadens invapore A (IP-... 45 0.003
AY826351_1(AY826351|pid:none) Fagopyrum esculentum aspartic prot... 44 0.004
(Q07831) RecName: Full=Non-pathogenic pore-forming peptide; ... 44 0.004
DQ648018_1(DQ648018|pid:none) Nicotiana tabacum aspartic proteas... 44 0.004
U51036_1(U51036|pid:none) Arabidopsis thaliana aspartic proteina... 44 0.005
DQ186291_1(DQ186291|pid:none) Gallus gallus NK-lysin mRNA, compl... 44 0.005
(P17129) RecName: Full=Pulmonary surfactant-associated protein B... 44 0.005
EF585741_1(EF585741|pid:none) Sonneratia alba isolate Sonn64_1 a... 44 0.006
FN359295_3(FN359295|pid:none) Schistosoma mansoni genome sequenc... 44 0.006
D12777_1(D12777|pid:none) Oryza sativa Japonica Group mRNA for a... 44 0.006
(P42211) RecName: Full=Aspartic proteinase; EC=3.4.23.-... 44 0.006
EF585743_1(EF585743|pid:none) Sonneratia ovata isolate Sonn64_3 ... 44 0.006
EF585744_1(EF585744|pid:none) Sonneratia apetala isolate Sonn64_... 44 0.006
CR954203_404(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 43 0.008
AM461662_3(AM461662|pid:none) Vitis vinifera contig VV78X237399.... 43 0.008
AF521090_1(AF521090|pid:none) Schistosoma mansoni clone p33F5 un... 43 0.008
BT075327_1(BT075327|pid:none) Osmerus mordax clone omor-eva-511-... 43 0.011
AF287258_1(AF287258|pid:none) Vigna unguiculata aspartic protein... 43 0.011
X57107_1(X57107|pid:none) Human gene for cerebroside sulfate act... 42 0.014
EF585930_1(EF585930|pid:none) Sonneratia ovata isolate Sonn529_3... 42 0.014
AB069959_1(AB069959|pid:none) Glycine max soyAP1 mRNA for aspart... 42 0.014
BT003256_1(BT003256|pid:none) Drosophila melanogaster LD25144 fu... 42 0.018
S41400(S41400)aspartic proteinase (EC 3.4.23.-) - wild cabbage (... 42 0.018
DQ317589_1(DQ317589|pid:none) Homo sapiens truncated surfactant ... 42 0.018
T14446(T14446) aspartic proteinase (EC 3.4.23.-) - wild cabbage ... 42 0.018
T11686(T11686)aspartic proteinase (EC 3.4.23.-) - cowpea 42 0.024
Z48723_1(Z48723|pid:none) S.mansoni mRNA for open reading frame. 42 0.024
B89567(B89567)protein T08A9.7 [imported] - Caenorhabditis elegans 41 0.031
(Q24824) RecName: Full=Pore-forming peptide ameobapore B; AltNam... 41 0.031
EU969886_1(EU969886|pid:none) Zea mays clone 336826 unknown mRNA. 41 0.031
BT064284_1(BT064284|pid:none) Zea mays full-length cDNA clone ZM... 41 0.031
AF082029_1(AF082029|pid:none) Hemerocallis hybrid cultivar senes... 41 0.041
AY253927_1(AY253927|pid:none) Entamoeba invadens invapore X (IP-... 41 0.041
FN315771_1(FN315771|pid:none) Schistosoma japonicum isolate Anhu... 41 0.041
AK066523_1(AK066523|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.053
AF362767_1(AF362767|pid:none) Paragonimus westermani clone NJS45... 40 0.069
AB045892_1(AB045892|pid:none) Nepenthes alata NaAP2 mRNA for asp... 40 0.069
AB021787_1(AB021787|pid:none) Pyrus pyrifolia PPFRU11 mRNA for a... 40 0.069
FN357316_22(FN357316|pid:none) Schistosoma mansoni genome sequen... 40 0.091
BC114190_1(BC114190|pid:none) Bos taurus similar to granulysin i... 40 0.091
AF082528_1(AF082528|pid:none) Entamoeba dispar strain SAW 142 po... 39 0.12
AB070857_1(AB070857|pid:none) Glycine max soyAP2 mRNA for aspart... 39 0.12
FN315782_1(FN315782|pid:none) Schistosoma japonicum isolate Anhu... 39 0.12
FN315781_1(FN315781|pid:none) Schistosoma japonicum isolate Anhu... 39 0.12
AY223355_1(AY223355|pid:none) Schistosoma japonicum SJCHGC01899 ... 39 0.12
FN315770_1(FN315770|pid:none) Schistosoma japonicum isolate Anhu... 39 0.12
AC000375_21(AC000375|pid:none) Sequence of BAC F19K23 from Arabi... 39 0.15
AK317285_1(AK317285|pid:none) Arabidopsis thaliana AT1G62290 mRN... 39 0.15
FN315783_1(FN315783|pid:none) Schistosoma japonicum isolate Anhu... 39 0.15
FN315780_1(FN315780|pid:none) Schistosoma japonicum isolate Anhu... 39 0.15
AK072283_1(AK072283|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.20
(P34095) RecName: Full=Pore-forming peptide ameobapore A; AltNam... 39 0.20
AC116957_105(AC116957|pid:none) Dictyostelium discoideum chromos... 38 0.26
AP008217_60(AP008217|pid:none) Oryza sativa (japonica cultivar-g... 38 0.34
AC009400_23(AC009400|pid:none) Arabidopsis thaliana chromosome I... 38 0.34
AB372260_1(AB372260|pid:none) Capsicum chinense mRNA for putativ... 37 0.45
CR382137_102(CR382137|pid:none) Debaryomyces hansenii strain CBS... 37 0.45
AC145372_5(AC145372|pid:none) Medicago truncatula clone mth2-5f4... 37 0.45
AF000262_3(AF000262|pid:none) Caenorhabditis elegans cosmid C48E... 37 0.59
BT067347_1(BT067347|pid:none) Zea mays full-length cDNA clone ZM... 37 0.77
EU967011_1(EU967011|pid:none) Zea mays clone 298823 unknown mRNA. 37 0.77
FN376020_1(FN376020|pid:none) Schistosoma mansoni genome sequenc... 37 0.77
U40417_8(U40417|pid:none) Caenorhabditis elegans cosmid T08A9, c... 36 1.0
PC4080(PC4080)aspartic proteinase (EC 3.4.-.-) L5 - rice (fragme... 36 1.0
AF107544_1(AF107544|pid:none) Ovis aries pulmonary surfactant-as... 36 1.3
AJ579366_1(AJ579366|pid:none) Chlamydomonas reinhardtii mRNA for... 36 1.3
A27562(A27562) T-cell activation protein, splice form 519 - huma... 35 1.7
CP000087_1206(CP000087|pid:none) Rickettsia bellii RML369-C, com... 35 1.7
AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso... 35 1.7
CQ974048_1(CQ974048|pid:none) Sequence 7 from Patent WO2004113520. 35 1.7
A00142_1(A00142|pid:none) H.sapiens LAG-2 gene encoding lymphoki... 35 1.7
AB024999_1(AB024999|pid:none) Cicer arietinum mRNA for aspartic ... 35 1.7
U46549_1(U46549|pid:none) Plasmodium berghei heat shock protein ... 35 2.2
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p... 35 2.2
AE016818_341(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 35 2.2
AB465596_1(AB465596|pid:none) Nilaparvata lugens mRNA for lipoph... 35 2.9
CR716159_2(CR716159|pid:none) P. carinii cosmid 22C8. 35 2.9
CP000099_104(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 34 3.8
AE014185_56(AE014185|pid:none) Plasmodium falciparum 3D7 chromos... 34 3.8
CR942518_1(CR942518|pid:none) Xenopus tropicalis finished cDNA, ... 34 3.8
CP001357_2030(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 34 3.8
AB002797_1(AB002797|pid:none) Entamoeba histolytica mRNA for amo... 34 5.0
AB277200_1(AB277200|pid:none) Ipomoea nil PnH10-12 mRNA for hypo... 34 5.0
AC139743_5(AC139743|pid:none) Medicago truncatula clone mth2-16m... 34 5.0
(Q24825) RecName: Full=Pore-forming peptide ameobapore C; AltNam... 34 5.0
CP000675_2650(CP000675|pid:none) Legionella pneumophila str. Cor... 34 5.0
AM910995_51(AM910995|pid:none) Plasmodium knowlesi strain H chro... 34 5.0
AC171265_20(AC171265|pid:none) Medicago truncatula clone mth2-2j... 34 5.0
LNRBB(A32421) pulmonary surfactant protein B precursor - rabbit ... 34 5.0
CP000728_2318(CP000728|pid:none) Clostridium botulinum F str. La... 34 5.0
AC000103_12(AC000103|pid:none) Genomic sequence for Arabidopsis ... 34 5.0
CR380949_37(CR380949|pid:none) Candida glabrata strain CBS138 ch... 33 6.5
CP001072_436(CP001072|pid:none) Helicobacter pylori Shi470, comp... 33 6.5
(Q6BK07) RecName: Full=Protein STU1; &CR382138_1121(CR382138|pi... 33 6.5
AY956433_1(AY956433|pid:none) Entamoeba histolytica strain DS6-6... 33 6.5
U29381_13(U29381|pid:none) Caenorhabditis elegans cosmid F35D11,... 33 6.5
CR382138_1226(CR382138|pid:none) Debaryomyces hansenii chromosom... 33 6.5
AM910992_27(AM910992|pid:none) Plasmodium knowlesi strain H chro... 33 6.5
T16270(T16270)hypothetical protein F35D11.11 - Caenorhabditis el... 33 6.5
(P22749) RecName: Full=Granulysin; AltName: Full=Protein NKG5; A... 33 6.5
CP000414_1898(CP000414|pid:none) Leuconostoc mesenteroides subsp... 33 6.5
AK304728_1(AK304728|pid:none) Homo sapiens cDNA FLJ51776 complet... 33 6.5
CR716158_2(CR716158|pid:none) P. carinii cosmid 18A9. 33 6.5
FN357554_33(FN357554|pid:none) Schistosoma mansoni genome sequen... 33 6.5
AM779476_1(AM779476|pid:none) Sus scrofa mRNA for surfactant pro... 33 6.5
U29381_12(U29381|pid:none) Caenorhabditis elegans cosmid F35D11,... 33 6.5
CP001287_1414(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 33 6.5
AC093312_12(AC093312|pid:none) Oryza sativa chromosome 3 BAC OSJ... 33 6.5
(Q0VBY1) RecName: Full=Outer dense fiber protein 2-like; &BC120... 33 8.5
BT050155_1(BT050155|pid:none) Salmo salar clone ssal-evf-516-263... 33 8.5
AB384148_1(AB384148|pid:none) Synthetic construct DNA, clone: pF... 33 8.5
AM910996_479(AM910996|pid:none) Plasmodium knowlesi strain H chr... 33 8.5
AK290550_1(AK290550|pid:none) Homo sapiens cDNA FLJ77065 partial... 33 8.5
AP006716_1818(AP006716|pid:none) Staphylococcus haemolyticus JCS... 33 8.5
EU814896_1(EU814896|pid:none) Tetrahymena thermophila Rnf1p (RNF... 33 8.5
AY501889_1(AY501889|pid:none) Plasmodium vivax strain Thailand-N... 33 8.5
T19722(T19722;T22684;T26014)hypothetical protein C34E11.3 - Caen... 33 8.5
(Q00798) RecName: Full=Reticulocyte-binding protein 1; Flags: Pr... 33 8.5
AB209693_1(AB209693|pid:none) Homo sapiens mRNA for golgi autoan... 33 8.5
DQ241852_1(DQ241852|pid:none) Solanum tuberosum clone 188C11 asp... 33 8.5
DQ903691_1(DQ903691|pid:none) Ipomoea batatas aspartic protease ... 33 8.5
AE015927_2041(AE015927|pid:none) Clostridium tetani E88, complet... 33 8.5
AY501884_1(AY501884|pid:none) Plasmodium vivax strain Salvador I... 33 8.5
AF273047_1(AF273047|pid:none) Homo sapiens CTCL tumor antigen se... 33 8.5
AB033055_1(AB033055|pid:none) Homo sapiens mRNA for KIAA1229 pro... 33 8.5
AY422083_1(AY422083|pid:none) Hydra magnipapillata zebra precurs... 33 8.5
Z67754_5(Z67754|pid:none) Caenorhabditis elegans Cosmid C34E11, ... 33 8.5
(Q642P2) RecName: Full=Protein dopey-2; &BC081251_1(BC081251|pi... 33 8.5
EU616544_1(EU616544|pid:none) Capsicum annuum putative acetyl co... 33 8.5
U31906_1(U31906|pid:none) Homo sapiens golgin-245 mRNA, complete... 33 8.5
AM779477_1(AM779477|pid:none) Sus scrofa mRNA for surfactant pro... 33 8.5
>AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin
variant protein.
Length = 530
Score = 99.4 bits (246), Expect = 1e-19
Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 1/196 (0%)
Frame = +2
Query: 47 CEACQIVIGYVENLVLHSNKTQGEIEKELDKLCNMVSPRYKPTCDSIVSVYTTEIIQLIL 226
CE C+ ++ V L+ +NKT+ EI DK+C+ + C +V Y + I+ ++L
Sbjct: 321 CEVCEFLVKEVTKLI-DNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILL 379
Query: 227 NKETPDLICKEIKVCTTEWEINTTKLFSKITEIAMKEIHSVAQKSKSHQLTQNNLRSTSE 406
+ +P+L+C + +C+ T + +H K
Sbjct: 380 EEVSPELVCSMLHLCSG-------------TRLPALTVHVTQPKDGGF------------ 414
Query: 407 CEICQVFVSKLESYISTNKSQEEIMEELDNACDYMKS-FEQQCKQMVQDYVPELIEIMST 583
CE+C+ V L+ + N +++EI+ L+ C ++ +++QC Q V +Y P LIEI+
Sbjct: 415 CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVE 474
Query: 584 TEDPNKVCSQISLCPN 631
DP+ VC +I CP+
Sbjct: 475 VMDPSFVCLKIGACPS 490
Score = 74.3 bits (181), Expect = 3e-12
Identities = 45/203 (22%), Positives = 95/203 (46%), Gaps = 4/203 (1%)
Frame = +2
Query: 29 KANPTECEACQIVIGYVENLVLHSNKTQGEIEKELDKLCNMVSPRYKPTCDSIVSVYTTE 208
K N C+ C ++ ++ V ++ + + + + C+ + P C + +S Y+
Sbjct: 195 KDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEI 254
Query: 209 IIQLILNKET--PDLICKEIKVCTTEWEINTTKLF-SKITEIAMKEIHSVAQKSKSHQLT 379
IQ++++ + P IC + C E+ L +K+ + + + K H++
Sbjct: 255 AIQMMMHMQDQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVEPIKKHEVP 314
Query: 380 QNNLRSTSECEICQVFVSKLESYISTNKSQEEIMEELDNACDYM-KSFEQQCKQMVQDYV 556
+S CE+C+ V ++ I NK+++EI++ D C + KS ++C+++V Y
Sbjct: 315 A---KSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYG 371
Query: 557 PELIEIMSTTEDPNKVCSQISLC 625
++ I+ P VCS + LC
Sbjct: 372 SSILSILLEEVSPELVCSMLHLC 394
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Frame = +2
Query: 407 CEICQVFVSKLESYISTNKSQEEIMEELDNACDYM--KSFEQQCKQMVQDYVPELIEIM- 577
C+IC+ V+ + N ++EEI+ L+ CD++ + CK++V Y+P +++I+
Sbjct: 66 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIK 125
Query: 578 STTEDPNKVCSQISLCPNDLSSKNESKNQRLLKKNII 688
P +VCS ++LC + E +Q+ L+ N I
Sbjct: 126 GEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKI 162
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 998,109,112
Number of extensions: 18554953
Number of successful extensions: 52566
Number of sequences better than 10.0: 253
Number of HSP's gapped: 52142
Number of HSP's successfully gapped: 480
Length of query: 234
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 109
Effective length of database: 646,610,989
Effective search space: 70480597801
Effective search space used: 70480597801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |