Contig-U15076-1
Contig ID Contig-U15076-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15076-1 (Contig-U15076-1Q) /CSM_Contig/Contig-U15076-1Q.Seq.d
TGGCCTACTGGAAAAAGTCCAATTTCAATACATACACATACATATTTGTT
TAATATAATTTTTTTATATTTTTTTTTTTTTATTTCCCTTCCCTCATTTC
TAGACAATTTATAGAAAGAAAAAGTCATGTCTGCTCCATCCGAAACCACC
ATCACCACCCCAACTACTCCAGCCCACAGAATTTTTGTTGGTAACTTAAC
TGAAAATGTTGAATCCTCAACTTTAGAAACTGCTTTTGCTGAATTCGGTA
AAGTTTTAAGTGTTAGAATCATTAAAAAGAAGTTCAAGAGTAACACTTTT
GGTTTCGTTGATATGGAAGATTTAGAAACTGCCAATAAAGCTGTTGCCGC
CATCAATGGTAGAGAATTCGACGGTAAACAAGTCAATGTTGAAATCGCTC
GTGAAAAGAGTACCGAAAGCAAACCAAAGAGAACTTCAACCAGAAAGACT
AGAACACCAAAACCAACCAGCACCACCACTGGCGAAAATGCTACTACTGA
ATCCACTGAAGCATCACCAACTTTAAATGGTAATACCACCACCAAACGTA
GAAATGCCAGACGTAACACCAAAGACGTCAAAGCTGCCACTACCACCACC
AACACCGATGCCACCACCAACACTGCTGCTGCTGCCTCAACCGCCGCTGC
TCCAGCTACCAAAACCTCTAAACCAAAGAGAGAAAGAAGACCAGCTGCCA
ACACTGCTGACAGACAACAAAGTACCACTACCCTCTTTGTCAGAAACATT
CCATACTCTTTTGATGATGTTAAATTATTAGAAACCTTCAAAGATTGCTC
ACCAAAGAGTGCTCATGTCATTGTCAACAAACACACCAACAGAAGCAAAG
GTTTCGGTTTCGTCGAATTCGATGATGTTGCCAATCAACAAAAAGGTCTC
ACCCTTAACAAACTCTCTGTTGAAAGTAGAGAACTCTCTGTTAAAATCGC
TTTAGTTCCAGAACCAAGAGATGCCACCGCAACTACTCCAGATGTTACCA
CTACCGCTTAAATACATTAAAAAAAAATAAAAAAAAAAAAATAAAAATAA
AGTGAATTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

Gap no gap
Contig length 1114
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1614151
End point 1613055
Strand (PLUS/MINUS) MINUS
Number of clones 19
Number of EST 18
Link to clone list U15076
List of clone(s)

est1=VFL547F,-1,184
est2=CHF162F,1,129
est3=SLC877E,31,1088
est4=VSI496F,33,409
est5=SSJ747E,35,1065
est6=FC-AT20E,38,1073
est7=VFN262Z,314,987
est8=VSG235F,381,910
est9=FC-IC0078F,411,719
est10=FC-AV15E,494,1099
est11=SLA882Z,503,1074
est12=FC-BH21Z,517,1073
est13=SLK178Z,691,1022
est14=VFK532Z,692,977
est15=VFN679Z,692,983
est16=SLG283E,828,1028
est17=SSG358F,840,1093
est18=SLG830F,853,1114
Translated Amino Acid sequence
wptgkspisihthtylfniiflyffffislpsfldnl*KEKVMSAPSETTITTPTTPAHR
IFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKFKSNTFGFVDMEDLETANKAVAAING
REFDGKQVNVEIAREKSTESKPKRTSTRKTRTPKPTSTTTGENATTESTEASPTLNGNTT
TKRRNARRNTKDVKAATTTTNTDATTNTAAAASTAAAPATKTSKPKRERRPAANTADRQQ
STTTLFVRNIPYSFDDVKLLETFKDCSPKSAHVIVNKHTNRSKGFGFVEFDDVANQQKGL
TLNKLSVESRELSVKIALVPEPRDATATTPDVTTTA*ih*kkikkkk*k*seff*kkkkk
kkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
wptgkspisihthtylfniiflyffffislpsfldnl*KEKVMSAPSETTITTPTTPAHR
IFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKFKSNTFGFVDMEDLETANKAVAAING
REFDGKQVNVEIAREKSTESKPKRTSTRKTRTPKPTSTTTGENATTESTEASPTLNGNTT
TKRRNARRNTKDVKAATTTTNTDATTNTAAAASTAAAPATKTSKPKRERRPAANTADRQQ
STTTLFVRNIPYSFDDVKLLETFKDCSPKSAHVIVNKHTNRSKGFGFVEFDDVANQQKGL
TLNKLSVESRELSVKIALVPEPRDATATTPDVTTTA*ih*kkikkkk*k*seff*kkkkk
kkkkkkkkkkk


Frame B:
gllekvqfqyihihicli*ffyiffflfpfphf*tiyrkkkscllhpkppsppqllqpte
fllvt*lkmlnpql*kllllnsvkf*vleslkrssrvtllvsliwki*klpikllppsmv
enstvnksmlkslvkrvpkanqrelqperlehqnqpapplakmlllnplkhhql*mvipp
pnvempdvtpktsklplppptpmppptllllpqppllqlpkplnqrekedqlptlltdnk
vplpslsetfhtllmmlny*kpskiahqrvlmslstntpteakvsvssnsmmlpinkkvs
pltnsllkvensllksl*fqnqemppqllqmlplplkyikkk*kkknknkvnsfkkkkkk
kkkkkkkkkkk


Frame C:
aywkksnfntytyifv*ynffiffffyfpslisrqfierkshvcsirnhhhhpnysspqn
fcw*ln*kc*ilnfrncfc*ir*sfkc*nh*kevqe*hfwfr*ygrfrncq*sccrhqw*
rirr*tsqc*nrs*keyrkqtkenfnqkd*ntktnqhhhwrkcyy*ih*sitnfkw*yhh
qt*kcqt*hqrrqschyhhqhrchhqhcccclnrrcssyqnl*tkerkktscqhc*qttk
yhyplcqkhsilf**c*iirnlqrlltkecschcqqthqqkqrfrfrrir*ccqstkrsh
p*qtlc*k*rtlc*nrfssrtkrchrnysrcyhyrlntlkknkkkkikik*illkkkkkk
kkkkkkkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15076-1 (Contig-U15076-1Q)
/CSM_Contig/Contig-U15076-1Q.Seq.d
(1114 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15076-1 (Contig-U15076-1Q) /CSM_Contig/Conti... 1857 0.0
Contig-U15312-1 (Contig-U15312-1Q) /CSM_Contig/Conti... 38 0.028
Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Conti... 38 0.028
Contig-U06989-1 (Contig-U06989-1Q) /CSM_Contig/Conti... 38 0.028
Contig-U01084-1 (Contig-U01084-1Q) /CSM_Contig/Conti... 38 0.028
Contig-U13633-1 (Contig-U13633-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U12922-1 (Contig-U12922-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U08800-1 (Contig-U08800-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U07944-1 (Contig-U07944-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U05401-1 (Contig-U05401-1Q) /CSM_Contig/Conti... 36 0.11

>Contig-U15076-1 (Contig-U15076-1Q) /CSM_Contig/Contig-U15076-1Q.Seq.d
Length = 1114

Score = 1857 bits (937), Expect = 0.0
Identities = 937/937 (100%)
Strand = Plus / Plus


Query: 82 atttcccttccctcatttctagacaatttatagaaagaaaaagtcatgtctgctccatcc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 atttcccttccctcatttctagacaatttatagaaagaaaaagtcatgtctgctccatcc 141


Query: 142 gaaaccaccatcaccaccccaactactccagcccacagaatttttgttggtaacttaact 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gaaaccaccatcaccaccccaactactccagcccacagaatttttgttggtaacttaact 201


Query: 202 gaaaatgttgaatcctcaactttagaaactgcttttgctgaattcggtaaagttttaagt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaaaatgttgaatcctcaactttagaaactgcttttgctgaattcggtaaagttttaagt 261


Query: 262 gttagaatcattaaaaagaagttcaagagtaacacttttggtttcgttgatatggaagat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttagaatcattaaaaagaagttcaagagtaacacttttggtttcgttgatatggaagat 321


Query: 322 ttagaaactgccaataaagctgttgccgccatcaatggtagagaattcgacggtaaacaa 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttagaaactgccaataaagctgttgccgccatcaatggtagagaattcgacggtaaacaa 381


Query: 382 gtcaatgttgaaatcgctcgtgaaaagagtaccgaaagcaaaccaaagagaacttcaacc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtcaatgttgaaatcgctcgtgaaaagagtaccgaaagcaaaccaaagagaacttcaacc 441


Query: 442 agaaagactagaacaccaaaaccaaccagcaccaccactggcgaaaatgctactactgaa 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agaaagactagaacaccaaaaccaaccagcaccaccactggcgaaaatgctactactgaa 501


Query: 502 tccactgaagcatcaccaactttaaatggtaataccaccaccaaacgtagaaatgccaga 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tccactgaagcatcaccaactttaaatggtaataccaccaccaaacgtagaaatgccaga 561


Query: 562 cgtaacaccaaagacgtcaaagctgccactaccaccaccaacaccgatgccaccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cgtaacaccaaagacgtcaaagctgccactaccaccaccaacaccgatgccaccaccaac 621


Query: 622 actgctgctgctgcctcaaccgccgctgctccagctaccaaaacctctaaaccaaagaga 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 actgctgctgctgcctcaaccgccgctgctccagctaccaaaacctctaaaccaaagaga 681


Query: 682 gaaagaagaccagctgccaacactgctgacagacaacaaagtaccactaccctctttgtc 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaaagaagaccagctgccaacactgctgacagacaacaaagtaccactaccctctttgtc 741


Query: 742 agaaacattccatactcttttgatgatgttaaattattagaaaccttcaaagattgctca 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agaaacattccatactcttttgatgatgttaaattattagaaaccttcaaagattgctca 801


Query: 802 ccaaagagtgctcatgtcattgtcaacaaacacaccaacagaagcaaaggtttcggtttc 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ccaaagagtgctcatgtcattgtcaacaaacacaccaacagaagcaaaggtttcggtttc 861


Query: 862 gtcgaattcgatgatgttgccaatcaacaaaaaggtctcacccttaacaaactctctgtt 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gtcgaattcgatgatgttgccaatcaacaaaaaggtctcacccttaacaaactctctgtt 921


Query: 922 gaaagtagagaactctctgttaaaatcgctttagttccagaaccaagagatgccaccgca 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 gaaagtagagaactctctgttaaaatcgctttagttccagaaccaagagatgccaccgca 981


Query: 982 actactccagatgttaccactaccgcttaaatacatt 1018
|||||||||||||||||||||||||||||||||||||
Sbjct: 982 actactccagatgttaccactaccgcttaaatacatt 1018


Score = 115 bits (58), Expect = 2e-25
Identities = 58/58 (100%)
Strand = Plus / Plus


Query: 1 tggcctactggaaaaagtccaatttcaatacatacacatacatatttgtttaatataa 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcctactggaaaaagtccaatttcaatacatacacatacatatttgtttaatataa 58


>Contig-U15312-1 (Contig-U15312-1Q) /CSM_Contig/Contig-U15312-1Q.Seq.d
Length = 824

Score = 38.2 bits (19), Expect = 0.028
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 309 tgatatggaagatttagaa 327
|||||||||||||||||||
Sbjct: 611 tgatatggaagatttagaa 629


>Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Contig-U14906-1Q.Seq.d
Length = 634

Score = 38.2 bits (19), Expect = 0.028
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 309 tgatatggaagatttagaa 327
|||||||||||||||||||
Sbjct: 472 tgatatggaagatttagaa 490


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,952
Number of Sequences: 8402
Number of extensions: 14952
Number of successful extensions: 2077
Number of sequences better than 10.0: 342
length of query: 1114
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1098
effective length of database: 7,941,110
effective search space: 8719338780
effective search space used: 8719338780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.11
Homology vs DNA
Query= Contig-U15076-1 (Contig-U15076-1Q) /CSM_Contig/Contig-U15076-1Q.Seq.d
(1114 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU061083) Dictyostelium discoideum slug cDNA, clone SLC877. 1092 0.0 2
(C24339) Dictyostelium discoideum gamete cDNA, clone FC-AT20. 1092 0.0 2
(AU284439) Dictyostelium discoideum gamete cDNA clone:FC-AV1... 779 0.0 1
(AU034439) Dictyostelium discoideum slug cDNA, clone SLC877. 779 0.0 1
(AU033485) Dictyostelium discoideum slug cDNA, clone SLA882. 779 0.0 1
(C91284) Dictyostelium discoideum slug cDNA, clone SSJ747. 779 0.0 1
(AU284703) Dictyostelium discoideum gamete cDNA clone:FC-BH2... 553 0.0 2
(BJ435602) Dictyostelium discoideum cDNA clone:ddv27k16, 3' ... 686 0.0 2
(AU053927) Dictyostelium discoideum slug cDNA, clone SLK178. 650 0.0 1
(AU268787) Dictyostelium discoideum vegetative cDNA clone:VS... 575 e-168 2
(AU266170) Dictyostelium discoideum vegetative cDNA clone:VS... 573 e-159 1
(AU271335) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 438 e-118 1
(AU074189) Dictyostelium discoideum slug cDNA, clone SSJ747. 383 e-109 2
(AU039733) Dictyostelium discoideum slug cDNA, clone SLG283. 379 e-100 1
(AU073200) Dictyostelium discoideum slug cDNA, clone SSG358. 355 2e-93 1
(BJ435909) Dictyostelium discoideum cDNA clone:ddv28m20, 3' ... 339 1e-88 1
(AU061973) Dictyostelium discoideum slug cDNA, clone SLG830. 289 1e-73 1
(BJ433625) Dictyostelium discoideum cDNA clone:ddv22o07, 3' ... 278 4e-70 1
(BJ415981) Dictyostelium discoideum cDNA clone:ddv24m11, 5' ... 161 2e-54 2
(BJ364701) Dictyostelium discoideum cDNA clone:ddc32k15, 5' ... 115 2e-34 2
(EC762071) PSE00007779 rw_mgpallid Polysphondylium pallidum ... 54 0.012 1
(EC761471) PSE00008288 rw_mgpallid Polysphondylium pallidum ... 54 0.012 1
(EC761439) PSE00002017 rw_mgpallid Polysphondylium pallidum ... 54 0.012 1
(EC760901) PSE00007808 rw_mgpallid Polysphondylium pallidum ... 54 0.012 1
(EC760819) PSE00004614 rw_mgpallid Polysphondylium pallidum ... 54 0.012 1
(EC744739) PSE00002532 rw_mgpallid Polysphondylium pallidum ... 54 0.012 1
(CE728091) tigr-gss-dog-17000315440555 Dog Library Canis lup... 30 0.014 4
(CV162046) CS_gil_50D11_M13Reverse Blue crab gill, normalize... 36 0.14 2
(AL732613) Mouse DNA sequence from clone RP23-193A21 on chro... 50 0.18 1
(CQ589139) Sequence 16897 from Patent WO0171042. 50 0.18 1
(AR509127) Sequence 14087 from patent US 6703491. 50 0.18 1
(AM494955) Leishmania braziliensis chromosome 18. 50 0.18 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 50 0.18 1
(AC023729) Drosophila melanogaster X BAC RP98-39L4 (Roswell ... 50 0.18 1
(AC023719) Drosophila melanogaster X BAC RP98-4L24 (Roswell ... 50 0.18 1
(AC114701) Rattus norvegicus clone CH230-312O22, WORKING DRA... 50 0.18 1
(AC097592) Rattus norvegicus clone CH230-184O20, *** SEQUENC... 50 0.18 1
(BX294664) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 50 0.18 1
(AC013068) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 50 0.18 1
(EC261105) 524934 MN08 Drosophila melanogaster cDNA clone 29... 50 0.18 1
(CT025589) Mouse DNA sequence from clone RP24-149O16 on chro... 38 0.40 2
(AC154403) Mus musculus BAC clone RP24-239F20 from chromosom... 38 0.41 2
(AC122162) Medicago truncatula clone mth2-16g15, complete se... 38 0.41 2
(AC180265) Strongylocentrotus purpuratus clone R3-3123H21, W... 48 0.42 3
(CF965657) 9996siced_4304.z1 Oryza sativa cv. LYP9 trefoil w... 34 0.53 2
(X68878) R.norvegicus mRNA + insert for assembly protein 180... 48 0.72 1
(X68877) R.norvegicus mRNA for assembly protein 180 (AP180). 48 0.72 1
(M83985) Mouse phosphoprotein (F1-20) mRNA, complete cds. 48 0.72 1
(BX255878) Mouse DNA sequence from clone RP23-444O21 on chro... 48 0.72 1
(BC052454) Mus musculus synaptosomal-associated protein 91, ... 48 0.72 1
(BC031773) Mus musculus synaptosomal-associated protein 91, ... 48 0.72 1
(AB093255) Mus musculus mRNA for mKIAA0656 protein. 48 0.72 1
(AM463736) Vitis vinifera, whole genome shotgun sequence, co... 48 0.72 1
(BD317268) Identification and Use of Molecules Implicated in... 48 0.72 1
(AX694348) Sequence 28 from Patent EP1281775. 48 0.72 1
(AC005248) Homo sapiens BAC clone GS1-83B20 from 7, complete... 48 0.72 1
(AC102079) Mus musculus clone RP23-444O21, WORKING DRAFT SEQ... 48 0.72 1
(AC177781) Strongylocentrotus purpuratus clone R3-1002J1, WO... 48 0.72 1
(AK147087) Mus musculus cDNA, RIKEN full-length enriched lib... 48 0.72 1
(FH645459) CHO_OF4982xb21r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.72 1
(FH359983) CHO_OF4688xc14r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.72 1
(FH326535) CHO_OF4558xp09r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.72 1
(FH158015) CHO_OF3132xd05r1.ab1 CHO_OF3 Nicotiana tabacum ge... 48 0.72 1
(ET816709) CHO_OF776xa22r1.ab1 CHO_OF Nicotiana tabacum geno... 48 0.72 1
(CR178970) Forward strand read from insert in 5'HPRT inserti... 48 0.72 1
(BU847532) AGENCOURT_10320825 NIH_MGC_144 Mus musculus cDNA ... 48 0.72 1
(BQ769071) UI-M-FC0-byn-o-17-0-UI.r1 NIH_BMAP_FC0 Mus muscul... 48 0.72 1
(BM937379) UI-M-BH4-azi-g-12-0-UI.r1 NIH_BMAP_M_S5 Mus muscu... 48 0.72 1
(FE752718) CAYF2492.b1 CAYF Petrolisthes cinctipes heart, wh... 48 0.72 1
(AC173959) Glycine max clone gmw1-27d20, WORKING DRAFT SEQUE... 46 0.93 4
(BK004048) TPA_exp: Rattus norvegicus type I keratin KA11 (K... 40 1.1 3
(AM502236) Leishmania infantum chromosome 18. 36 1.3 2
(AC175229) Atelerix albiventris clone LB4-96D8, WORKING DRAF... 36 1.5 2
(AC180528) Strongylocentrotus purpuratus clone R3-3016G12, W... 36 1.5 2
(AC181508) Strongylocentrotus purpuratus clone R3-59H20, WOR... 34 1.5 2
(BM109778) EST557314 potato roots Solanum tuberosum cDNA clo... 32 1.7 3
(AC068917) Homo sapiens chromosome 5 clone RP11-313B16, WORK... 36 1.7 6
(AM783654) Nicotiana tabacum EST, clone nt002019016. 40 1.7 2
(EC184637) SOE00004873 Scenedesmus obliquus Large regular Sc... 36 1.9 2
(EW794507) G893P523RD14.T0 Ixodes scapularis Pooled Non-infe... 32 1.9 2
(AC008331) Drosophila melanogaster, chromosome 2L, region 29... 42 2.0 6
(AC224417) Bos taurus clone CH240-485J11, WORKING DRAFT SEQU... 38 2.5 5
(FE814082) CCAG31489.b1 CCAG Petrolisthes cinctipes heart, g... 42 2.6 2
(CU463259) Zebrafish DNA sequence from clone DKEY-5E5 in lin... 46 2.8 1
(AC155848) Mus musculus 6 BAC RP24-534P19 (Roswell Park Canc... 46 2.8 1
(AM502249) Leishmania infantum chromosome 31. 46 2.8 1
(AC140963) Bos taurus clone RP42-525L10, WORKING DRAFT SEQUE... 46 2.8 1
(AC140962) Bos taurus clone RP42-329O16, WORKING DRAFT SEQUE... 46 2.8 1
(CT573352) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.8 1
(BX936444) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.8 1
(AC224249) Bos taurus clone CH240-445J2, WORKING DRAFT SEQUE... 46 2.8 1
(AC222443) Bos taurus clone CH240-418F16, WORKING DRAFT SEQU... 46 2.8 1
(AC218381) Bos taurus clone CH240-284O16, WORKING DRAFT SEQU... 46 2.8 1
(AC212781) Pongo abelii chromosome UNKNOWN clone CH276-399G2... 46 2.8 1
(AC211708) Pongo abelii chromosome UNKNOWN clone CH276-364F1... 46 2.8 1
(AC210856) Pongo abelii chromosome UNKNOWN clone CH276-103D2... 46 2.8 1
(FH625976) CHO_OF4546xl08r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.8 1
(FH621452) CHO_OF4600xa14f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.8 1
(AM670820) Entamoeba terrapinae GSS, clone terra175d05.p1k. 46 2.8 1
(DX980117) SBA007_N01.r Sugar beet BAC library USH20 (Code S... 46 2.8 1

>(AU061083) Dictyostelium discoideum slug cDNA, clone SLC877.
Length = 630

Score = 1092 bits (551), Expect(2) = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus


Query: 82 atttcccttccctcatttctagacaatttatagaaagaaaaagtcatgtctgctccatcc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 atttcccttccctcatttctagacaatttatagaaagaaaaagtcatgtctgctccatcc 110


Query: 142 gaaaccaccatcaccaccccaactactccagcccacagaatttttgttggtaacttaact 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gaaaccaccatcaccaccccaactactccagcccacagaatttttgttggtaacttaact 170


Query: 202 gaaaatgttgaatcctcaactttagaaactgcttttgctgaattcggtaaagttttaagt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gaaaatgttgaatcctcaactttagaaactgcttttgctgaattcggtaaagttttaagt 230


Query: 262 gttagaatcattaaaaagaagttcaagagtaacacttttggtttcgttgatatggaagat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gttagaatcattaaaaagaagttcaagagtaacacttttggtttcgttgatatggaagat 290


Query: 322 ttagaaactgccaataaagctgttgccgccatcaatggtagagaattcgacggtaaacaa 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttagaaactgccaataaagctgttgccgccatcaatggtagagaattcgacggtaaacaa 350


Query: 382 gtcaatgttgaaatcgctcgtgaaaagagtaccgaaagcaaaccaaagagaacttcaacc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtcaatgttgaaatcgctcgtgaaaagagtaccgaaagcaaaccaaagagaacttcaacc 410


Query: 442 agaaagactagaacaccaaaaccaaccagcaccaccactggcgaaaatgctactactgaa 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agaaagactagaacaccaaaaccaaccagcaccaccactggcgaaaatgctactactgaa 470


Query: 502 tccactgaagcatcaccaactttaaatggtaataccaccaccaaacgtagaaatgccaga 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tccactgaagcatcaccaactttaaatggtaataccaccaccaaacgtagaaatgccaga 530


Query: 562 cgtaacaccaaagacgtcaaagctgccactaccaccaccaacaccgatgccaccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cgtaacaccaaagacgtcaaagctgccactaccaccaccaacaccgatgccaccaccaac 590


Query: 622 actgctgctgc 632
|||||||||||
Sbjct: 591 actgctgctgc 601

Score = 56.0 bits (28), Expect(2) = 0.0
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 31 catacacatacatatttgtttaatataa 58
||||||||||||||||||||||||||||
Sbjct: 1 catacacatacatatttgtttaatataa 28

Score = 77.8 bits (39), Expect(2) = 3e-10
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 626 ctgctgctgcctcaaccgccgctgctccagctaccaaaa 664
|||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ctgctgctgcctcaaccgccgctgctccagctaccaaaa 630

Score = 26.3 bits (13), Expect(2) = 3e-10
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 593 ccaccaccaacac 605
|||||||||||||
Sbjct: 580 ccaccaccaacac 592

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,152,901,606
Number of extensions: 73739475
Number of successful extensions: 7809113
Number of sequences better than 10.0: 157
Length of query: 1114
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1090
Effective length of database: 97,308,875,965
Effective search space: 106066674801850
Effective search space used: 106066674801850
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.14
Homology vs Protein
Query= Contig-U15076-1 (Contig-U15076-1Q) /CSM_Contig/Contig-U15076-1Q.Seq.d
(1114 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

D31712_1(D31712|pid:none) Arabidopsis thaliana gene for RNA-bind... 65 4e-09
U08467_3(U08467|pid:none) Arabidopsis thaliana chloroplast RNA-b... 65 4e-09
(Q04836) RecName: Full=31 kDa ribonucleoprotein, chloroplastic; ... 65 4e-09
X57955_1(X57955|pid:none) S.oleracea mRNA for a 28kD RNA binding... 65 6e-09
AF255058_1(AF255058|pid:none) Pisum sativum 33 kDa ribonucleopro... 64 1e-08
EF147288_1(EF147288|pid:none) Populus trichocarpa clone WS0122_E... 63 2e-08
CP000884_3631(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 63 2e-08
AE000520_352(AE000520|pid:none) Treponema pallidum subsp. pallid... 62 4e-08
CP001100_1585(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 62 5e-08
CP001108_121(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 62 5e-08
CP000096_86(CP000096|pid:none) Pelodictyon luteolum DSM 273, com... 61 6e-08
CP001099_86(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, c... 61 6e-08
FB912255_1(FB912255|pid:none) Sequence 131528 from Patent WO2008... 61 6e-08
FB912253_1(FB912253|pid:none) Sequence 131526 from Patent WO2008... 61 6e-08
AP006841_2720(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 61 6e-08
BT085576_1(BT085576|pid:none) Zea mays full-length cDNA clone ZM... 61 8e-08
EU963124_1(EU963124|pid:none) Zea mays clone 257985 unknown mRNA. 60 1e-07
FB912277_1(FB912277|pid:none) Sequence 131550 from Patent WO2008... 60 1e-07
AF315811_1(AF315811|pid:none) Triticum aestivum RNA-binding prot... 60 1e-07
FB912193_1(FB912193|pid:none) Sequence 131466 from Patent WO2008... 60 1e-07
EF576487_1(EF576487|pid:none) Oryza sativa (indica cultivar-grou... 60 1e-07
BT043341_1(BT043341|pid:none) Zea mays full-length cDNA clone ZM... 60 1e-07
AP004339_10(AP004339|pid:none) Oryza sativa Japonica Group genom... 60 1e-07
EU960096_1(EU960096|pid:none) Zea mays clone 221668 ribonucleopr... 60 1e-07
FB912267_1(FB912267|pid:none) Sequence 131540 from Patent WO2008... 60 1e-07
BC003283_1(BC003283|pid:none) Mus musculus poly(A) binding prote... 60 1e-07
CP000096_993(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 60 1e-07
AL606917_1(AL606917|pid:none) Mouse DNA sequence from clone RP23... 60 1e-07
AK135962_1(AK135962|pid:none) Mus musculus in vitro fertilized e... 60 1e-07
AE006470_132(AE006470|pid:none) Chlorobium tepidum TLS, complete... 60 1e-07
AL606917_2(AL606917|pid:none) Mouse DNA sequence from clone RP23... 60 1e-07
AL606917_4(AL606917|pid:none) Mouse DNA sequence from clone RP23... 60 1e-07
FB912189_1(FB912189|pid:none) Sequence 131462 from Patent WO2008... 60 1e-07
AM451268_1(AM451268|pid:none) Vitis vinifera contig VV78X095284.... 60 2e-07
CP000108_1527(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 59 2e-07
BC071591_1(BC071591|pid:none) Homo sapiens poly(A) binding prote... 59 2e-07
AL365277_14(AL365277|pid:none) Human DNA sequence from clone RP1... 59 2e-07
(Q13310) RecName: Full=Polyadenylate-binding protein 4; ... 59 2e-07
FB912191_1(FB912191|pid:none) Sequence 131464 from Patent WO2008... 59 2e-07
D12799_1(D12799|pid:none) Homo sapiens mRNA for polyadenylate bi... 59 2e-07
AB025351_1(AB025351|pid:none) Rana catesbeiana mRNA for BFCIRP, ... 59 2e-07
CP000383_2371(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 59 3e-07
CP001110_1298(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 59 3e-07
D31711_1(D31711|pid:none) Arabidopsis thaliana gene for RNA-bind... 59 4e-07
AP010656_534(AP010656|pid:none) Candidatus Azobacteroides pseudo... 59 4e-07
FB912259_1(FB912259|pid:none) Sequence 131532 from Patent WO2008... 59 4e-07
AK069121_1(AK069121|pid:none) Oryza sativa Japonica Group cDNA c... 59 4e-07
CP000140_908(CP000140|pid:none) Parabacteroides distasonis ATCC ... 59 4e-07
CP000361_59(CP000361|pid:none) Arcobacter butzleri RM4018, compl... 59 4e-07
(Q43349) RecName: Full=29 kDa ribonucleoprotein, chloroplastic; ... 59 4e-07
D31710_1(D31710|pid:none) Arabidopsis thaliana gene for RNA-bind... 59 4e-07
CP001108_1196(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 59 4e-07
AE016819_340(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 59 4e-07
FB912185_1(FB912185|pid:none) Sequence 131458 from Patent WO2008... 58 5e-07
CT573072_196(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 58 5e-07
CP000254_2375(CP000254|pid:none) Methanospirillum hungatei JF-1,... 58 5e-07
CP001110_1948(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 58 5e-07
FB912279_1(FB912279|pid:none) Sequence 131552 from Patent WO2008... 58 5e-07
CP000539_2842(CP000539|pid:none) Acidovorax sp. JS42, complete g... 58 5e-07
FB912199_1(FB912199|pid:none) Sequence 131472 from Patent WO2008... 58 5e-07
BT053782_1(BT053782|pid:none) Zea mays full-length cDNA clone ZM... 58 7e-07
(P19682) RecName: Full=28 kDa ribonucleoprotein, chloroplastic; ... 58 7e-07
(P19683) RecName: Full=31 kDa ribonucleoprotein, chloroplastic; ... 58 7e-07
FM992688_16(FM992688|pid:none) Candida dubliniensis CD36 chromos... 58 7e-07
BX649404_2(BX649404|pid:none) Zebrafish DNA sequence from clone ... 57 9e-07
BT045197_1(BT045197|pid:none) Salmo salar clone ssal-rgf-514-254... 57 9e-07
AB085214_1(AB085214|pid:none) Hyla japonica cirp-beta mRNA for c... 57 9e-07
AJ421781_1(AJ421781|pid:none) Persea americana chloroplast mRNA ... 57 9e-07
BT073963_1(BT073963|pid:none) Oncorhynchus mykiss clone omyk-evo... 57 9e-07
BT049685_1(BT049685|pid:none) Salmo salar clone ssal-rgb2-559-08... 57 9e-07
BX649404_1(BX649404|pid:none) Zebrafish DNA sequence from clone ... 57 9e-07
DQ126684_1(DQ126684|pid:none) Gallus gallus aggrecan promoter bi... 57 1e-06
DQ215543_1(DQ215543|pid:none) Taeniopygia guttata clone 0058P006... 57 1e-06
(Q14011) RecName: Full=Cold-inducible RNA-binding protein; AltNa... 57 1e-06
AJ719636_1(AJ719636|pid:none) Gallus gallus mRNA for hypothetica... 57 1e-06
AB171494_1(AB171494|pid:none) Macaca fascicularis brain cDNA clo... 57 1e-06
BC102773_1(BC102773|pid:none) Bos taurus cold inducible RNA bind... 57 1e-06
AB306286_1(AB306286|pid:none) Alligator mississippiensis CIRBP m... 57 1e-06
CP001097_2035(CP001097|pid:none) Chlorobium limicola DSM 245, co... 57 1e-06
DQ215534_1(DQ215534|pid:none) Taeniopygia guttata clone 0063P001... 57 1e-06
DQ215533_1(DQ215533|pid:none) Taeniopygia guttata clone 0058P002... 57 1e-06
AB170797_1(AB170797|pid:none) Macaca fascicularis brain cDNA clo... 57 1e-06
AE017282_947(AE017282|pid:none) Methylococcus capsulatus str. Ba... 57 1e-06
AK304470_1(AK304470|pid:none) Homo sapiens cDNA FLJ52850 complet... 57 1e-06
DQ215539_1(DQ215539|pid:none) Taeniopygia guttata clone 0063P002... 57 1e-06
(Q9ZUU4) RecName: Full=Putative ribonucleoprotein At2g37220, chl... 57 2e-06
CP000492_2580(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 57 2e-06
(P60824) RecName: Full=Cold-inducible RNA-binding protein; AltNa... 57 2e-06
EU959070_1(EU959070|pid:none) Zea mays clone 210066 hypothetical... 57 2e-06
BX294151_174(BX294151|pid:none) Rhodopirellula baltica SH 1 comp... 57 2e-06
CP000139_431(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 57 2e-06
EU559167_101(EU559167|pid:none) Candidatus Nitrospira defluvii C... 57 2e-06
AY088648_1(AY088648|pid:none) Arabidopsis thaliana clone 8849 mR... 57 2e-06
CP000254_345(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 57 2e-06
CP000254_1516(CP000254|pid:none) Methanospirillum hungatei JF-1,... 56 2e-06
(Q24491) RecName: Full=RNA-binding protein Rsf1; AltName: Full=R... 56 2e-06
FB872108_1(FB872108|pid:none) Sequence 91381 from Patent WO20080... 56 2e-06
AF240679_1(AF240679|pid:none) Cucumis sativus poly(A)-binding pr... 56 2e-06
CR382123_496(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 56 2e-06
BC168959_1(BC168959|pid:none) Rattus norvegicus poly(A) binding ... 56 2e-06
BC041204_1(BC041204|pid:none) Xenopus laevis cold inducible RNA-... 56 2e-06
(P42731) RecName: Full=Polyadenylate-binding protein 2; ... 56 2e-06
BT077917_1(BT077917|pid:none) Lepeophtheirus salmonis Pacific fo... 56 2e-06
CP000473_7431(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 56 2e-06
AK070743_1(AK070743|pid:none) Oryza sativa Japonica Group cDNA c... 56 3e-06
CP000473_989(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 56 3e-06
AM920430_123(AM920430|pid:none) Penicillium chrysogenum Wisconsi... 56 3e-06
BT080325_1(BT080325|pid:none) Caligus clemensi clone ccle-evs-50... 56 3e-06
DQ120644_1(DQ120644|pid:none) Hylobates lar PABP3 gene, partial ... 56 3e-06
BX842649_260(BX842649|pid:none) Bdellovibrio bacteriovorus compl... 56 3e-06
DQ336954_2(DQ336954|pid:none) Glycine max cultivar Williams 82 c... 56 3e-06
AE017125_319(AE017125|pid:none) Helicobacter hepaticus ATCC 5144... 56 3e-06
AE015928_3838(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 56 3e-06
(P49311) RecName: Full=Glycine-rich RNA-binding protein GRP2A; ... 56 3e-06
(P29341) RecName: Full=Polyadenylate-binding protein 1; ... 55 3e-06
AK298990_1(AK298990|pid:none) Homo sapiens cDNA FLJ59219 complet... 55 3e-06
(Q9H361) RecName: Full=Polyadenylate-binding protein 3; ... 55 3e-06
DQ120646_1(DQ120646|pid:none) Aotus trivirgatus PABP3 gene, part... 55 3e-06
(Q5R8F7) RecName: Full=Polyadenylate-binding protein 1; ... 55 3e-06
DQ120640_1(DQ120640|pid:none) Homo sapiens PABP3 gene, partial c... 55 3e-06
S52491(S52491) polyadenylate binding protein II - human &Z48501... 55 3e-06
BT087787_1(BT087787|pid:none) Zea mays full-length cDNA clone ZM... 55 3e-06
DQ120645_1(DQ120645|pid:none) Cercopithecus sabaeus PABP3 gene, ... 55 3e-06
(P11940) RecName: Full=Polyadenylate-binding protein 1; ... 55 3e-06
EF085266_1(EF085266|pid:none) Picea sitchensis clone WS02718_G07... 55 3e-06
AJ719881_1(AJ719881|pid:none) Gallus gallus mRNA for hypothetica... 55 3e-06
(Q9EPH8) RecName: Full=Polyadenylate-binding protein 1; ... 55 3e-06
AK089747_1(AK089747|pid:none) Mus musculus activated spleen cDNA... 55 3e-06
DQ120643_1(DQ120643|pid:none) Pongo pygmaeus PABP3 gene, partial... 55 3e-06
AF132026_1(AF132026|pid:none) Homo sapiens testis-specific poly(... 55 3e-06
AY085838_1(AY085838|pid:none) Arabidopsis thaliana clone 18903 m... 55 4e-06
AK342546_1(AK342546|pid:none) Acyrthosiphon pisum ACYPI010185 mR... 55 4e-06
FB912195_1(FB912195|pid:none) Sequence 131468 from Patent WO2008... 55 4e-06
AK319051_1(AK319051|pid:none) Arabidopsis thaliana AT2G21660 mRN... 55 4e-06
CP000909_1815(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 55 4e-06
BT033456_1(BT033456|pid:none) Zea mays full-length cDNA clone ZM... 55 4e-06
(P49313) RecName: Full=30 kDa ribonucleoprotein, chloroplastic; ... 55 4e-06
AC084766_7(AC084766|pid:none) Oryza sativa chromosome 3 BAC OSJN... 55 4e-06
AC122728_12(AC122728|pid:none) Medicago truncatula clone mth2-22... 55 4e-06
CR940348_585(CR940348|pid:none) Theileria annulata strain Ankara... 55 4e-06
AP001297_2(AP001297|pid:none) Arabidopsis thaliana genomic DNA, ... 55 4e-06
AF349964_1(AF349964|pid:none) Daucus carota poly(A)-binding prot... 55 4e-06
BT062575_1(BT062575|pid:none) Zea mays full-length cDNA clone ZM... 55 4e-06
BT053136_1(BT053136|pid:none) Medicago truncatula clone MTYFL_FM... 55 4e-06
S55785(S55785;S68087;T37634;S52318) nucleolar protein gar2 - fis... 55 4e-06
CP001635_319(CP001635|pid:none) Variovorax paradoxus S110 chromo... 55 4e-06
CP000581_580(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 55 6e-06
AF190655_1(AF190655|pid:none) Nicotiana tabacum poly(A)-binding ... 55 6e-06
T22767(T22767) hypothetical protein F56A8.6 - Caenorhabditis ele... 55 6e-06
CU928179_297(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 55 6e-06
BC108786_1(BC108786|pid:none) Xenopus laevis similar to RNA bind... 55 6e-06
CR954209_116(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 55 6e-06
BC045210_1(BC045210|pid:none) Xenopus laevis similar to RNA bind... 55 6e-06
AK131715_1(AK131715|pid:none) Mus musculus adult male testis cDN... 55 6e-06
CR380951_131(CR380951|pid:none) Candida glabrata strain CBS138 c... 55 6e-06
BT074603_1(BT074603|pid:none) Osmerus mordax clone omor-rgc-514-... 55 6e-06
AC134242_12(AC134242|pid:none) Medicago truncatula clone mth2-10... 55 6e-06
BC051134_1(BC051134|pid:none) Mus musculus poly(A) binding prote... 55 6e-06
U61842_1(U61842|pid:none) Fusarium solani cutinase negative acti... 55 6e-06
CP000492_1229(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 55 6e-06
AL606453_1(AL606453|pid:none) Oryza sativa genomic DNA, chromoso... 55 6e-06
FJ502080_1(FJ502080|pid:none) Aristichthys nobilis clone B26 pol... 55 6e-06
AC134242_21(AC134242|pid:none) Medicago truncatula clone mth2-10... 54 8e-06
(Q4VXU2) RecName: Full=Polyadenylate-binding protein 1-like; &A... 54 8e-06
CP000141_379(CP000141|pid:none) Carboxydothermus hydrogenoforman... 54 8e-06
CP000478_83(CP000478|pid:none) Syntrophobacter fumaroxidans MPOB... 54 8e-06
AM920435_1013(AM920435|pid:none) Penicillium chrysogenum Wiscons... 54 8e-06
AP007157_331(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 54 8e-06
S71779(S71779) glycine-rich RNA-binding protein GRP1 - wheat &U... 54 8e-06
(O89086) RecName: Full=Putative RNA-binding protein 3; AltName: ... 54 8e-06
FB872092_1(FB872092|pid:none) Sequence 91365 from Patent WO20080... 54 8e-06
EF147596_1(EF147596|pid:none) Populus trichocarpa clone WS0123_K... 54 8e-06
AL136900_1(AL136900|pid:none) Homo sapiens mRNA; cDNA DKFZp434M1... 54 8e-06
AM447494_2(AM447494|pid:none) Vitis vinifera contig VV78X024983.... 54 8e-06
D38485_1(D38485|pid:none) Triticum aestivum mRNA for Ps16 protei... 54 8e-06
AF310215_1(AF310215|pid:none) Sorghum bicolor glycine-rich RNA-b... 54 8e-06
EF144922_1(EF144922|pid:none) Populus trichocarpa clone WS01119_... 54 8e-06
AY506544_1(AY506544|pid:none) Lycopersicon esculentum DNA-bindin... 54 1e-05
CP000860_1791(CP000860|pid:none) Candidatus Desulforudis audaxvi... 54 1e-05
AK064923_1(AK064923|pid:none) Oryza sativa Japonica Group cDNA c... 54 1e-05
CR954201_559(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 54 1e-05
AX886322_1(AX886322|pid:none) Sequence 2185 from Patent EP1033401. 54 1e-05
U71299_1(U71299|pid:none) Ambystoma mexicanum RNA-binding protei... 54 1e-05
AB044535_1(AB044535|pid:none) Xenopus laevis xCIRP2 mRNA for col... 54 1e-05
CP000127_2662(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 54 1e-05
BC077356_1(BC077356|pid:none) Xenopus laevis similar to RNA bind... 54 1e-05
FJ356060_1(FJ356060|pid:none) Chorispora bungeana putative glyci... 54 1e-05
AE010300_1919(AE010300|pid:none) Leptospira interrogans serovar ... 54 1e-05
CU633867_79(CU633867|pid:none) Podospora anserina genomic DNA ch... 54 1e-05
AB062910_1(AB062910|pid:none) Physcomitrella patens PpGRP2 mRNA ... 54 1e-05
AB170452_1(AB170452|pid:none) Macaca fascicularis brain cDNA clo... 54 1e-05
(Q99070) RecName: Full=Glycine-rich RNA-binding protein 2; &FB8... 54 1e-05
(Q9NEW6) RecName: Full=Probable splicing factor, arginine/serine... 54 1e-05
AK243636_1(AK243636|pid:none) Oryza sativa Japonica Group cDNA, ... 54 1e-05
(Q9H0L4) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 54 1e-05
AP010904_1161(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 54 1e-05
EU076902_1(EU076902|pid:none) Bambusa oldhamii putative glycine-... 54 1e-05
AJ002893_1(AJ002893|pid:none) Oryza sativa mRNA for glycine-rich... 54 1e-05
(Q8C7E9) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 54 1e-05
DQ191652_1(DQ191652|pid:none) Solanum tuberosum RNA binding prot... 54 1e-05
AM270034_36(AM270034|pid:none) Aspergillus niger contig An02c040... 54 1e-05
BC028239_1(BC028239|pid:none) Homo sapiens cleavage stimulation ... 54 1e-05
BC169065_1(BC169065|pid:none) Rattus norvegicus cleavage stimula... 54 1e-05
DQ497204_1(DQ497204|pid:none) Bombyx mori Rsf1 mRNA, complete cds. 54 1e-05
CP001635_5229(CP001635|pid:none) Variovorax paradoxus S110 chrom... 54 1e-05
AK084696_1(AK084696|pid:none) Mus musculus 13 days embryo heart ... 54 1e-05
BC099992_1(BC099992|pid:none) Danio rerio poly A binding protein... 54 1e-05
BC053126_1(BC053126|pid:none) Danio rerio poly(A) binding protei... 53 2e-05
AC002391_1(AC002391|pid:none) Arabidopsis thaliana chromosome 2 ... 53 2e-05
AL671915_5(AL671915|pid:none) Mouse DNA sequence from clone RP23... 53 2e-05
BT080536_1(BT080536|pid:none) Caligus clemensi clone ccle-evs-51... 53 2e-05
EF082522_1(EF082522|pid:none) Picea sitchensis clone WS0297_G20 ... 53 2e-05
CP001392_3422(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 53 2e-05
(Q5RDA3) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 53 2e-05
BC126543_1(BC126543|pid:none) Bos taurus cleavage stimulation fa... 53 2e-05
AB207971_1(AB207971|pid:none) Lolium perenne gene for glycine-ri... 53 2e-05
AK341489_1(AK341489|pid:none) Acyrthosiphon pisum ACYPI003349 mR... 53 2e-05
(Q8HXM1) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 53 2e-05
AJ002894_1(AJ002894|pid:none) Oryza sativa mRNA for glycine rich... 53 2e-05
DQ120650_1(DQ120650|pid:none) Homo sapiens RBM1 gene, partial cds. 53 2e-05
AE017341_447(AE017341|pid:none) Cryptococcus neoformans var. neo... 53 2e-05
EU616680_1(EU616680|pid:none) Mus musculus betaCstF-64 variant 3... 53 2e-05
AP006840_1009(AP006840|pid:none) Symbiobacterium thermophilum IA... 53 2e-05
AM468150_4(AM468150|pid:none) Vitis vinifera contig VV78X086105.... 53 2e-05
AB462999_1(AB462999|pid:none) Synthetic construct DNA, clone: pF... 53 2e-05
AC150977_20(AC150977|pid:none) Medicago truncatula clone mth2-32... 53 2e-05
EU616682_1(EU616682|pid:none) Mus musculus betaCstF-64 variant 1... 53 2e-05
AJ719664_1(AJ719664|pid:none) Gallus gallus mRNA for hypothetica... 53 2e-05
AP009178_278(AP009178|pid:none) Nitratiruptor sp. SB155-2 genomi... 53 2e-05
(P39697) RecName: Full=40S ribosomal protein S19, mitochondrial;... 53 2e-05
BC033135_1(BC033135|pid:none) Homo sapiens, Similar to cleavage ... 53 2e-05
AK032817_1(AK032817|pid:none) Mus musculus 12 days embryo male w... 53 2e-05
CR940353_284(CR940353|pid:none) Theileria annulata strain Ankara... 53 2e-05
DQ120651_1(DQ120651|pid:none) Pan troglodytes RBM1 gene, partial... 53 2e-05
DQ120655_1(DQ120655|pid:none) Cercopithecus sabaeus RBM1 gene, p... 53 2e-05
BC041291_1(BC041291|pid:none) Xenopus laevis cleavage stimulatio... 53 2e-05
AF411956_7(AF411956|pid:none) Takifugu rubripes lck gene locus, ... 53 2e-05
AP000419_3(AP000419|pid:none) Arabidopsis thaliana genomic DNA, ... 53 2e-05
FB912281_1(FB912281|pid:none) Sequence 131554 from Patent WO2008... 53 2e-05
BT070011_1(BT070011|pid:none) Zea mays full-length cDNA clone ZM... 53 2e-05
CP000828_5426(CP000828|pid:none) Acaryochloris marina MBIC11017,... 53 2e-05
EU963022_1(EU963022|pid:none) Zea mays clone 247507 plastid-spec... 53 2e-05
BC065442_1(BC065442|pid:none) Danio rerio cleavage stimulation f... 53 2e-05
CP000529_1915(CP000529|pid:none) Polaromonas naphthalenivorans C... 53 2e-05
FB912275_1(FB912275|pid:none) Sequence 131548 from Patent WO2008... 53 2e-05
A86320(A86320) hypothetical protein F26I16.3 - Arabidopsis thali... 53 2e-05
AC136449_14(AC136449|pid:none) Medicago truncatula clone mth2-11... 53 2e-05
AP008209_2228(AP008209|pid:none) Oryza sativa (japonica cultivar... 53 2e-05
AB170602_1(AB170602|pid:none) Macaca fascicularis brain cDNA clo... 53 2e-05
AK226472_1(AK226472|pid:none) Arabidopsis thaliana mRNA for puta... 53 2e-05
AK300411_1(AK300411|pid:none) Homo sapiens cDNA FLJ50863 complet... 53 2e-05
AC092557_8(AC092557|pid:none) Oryza sativa chromosome 3 BAC OSJN... 53 2e-05
AC148528_1(AC148528|pid:none) Medicago truncatula clone mth2-53h... 53 2e-05
AP004384_18(AP004384|pid:none) Oryza sativa Japonica Group genom... 53 2e-05
(Q5AI15) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 53 2e-05
DQ241855_1(DQ241855|pid:none) Solanum tuberosum clone 002F03 put... 53 2e-05
AY084821_1(AY084821|pid:none) Arabidopsis thaliana clone 118696 ... 53 2e-05
AM478333_2(AM478333|pid:none) Vitis vinifera contig VV78X160178.... 53 2e-05
FJ527019_1(FJ527019|pid:none) Macaca mulatta truncated RNA bindi... 52 3e-05
AF009003_1(AF009003|pid:none) Pelargonium x hortorum glycine-ric... 52 3e-05
U30829_1(U30829|pid:none) Human splicing factor SRp55-3 (SRp55) ... 52 3e-05
(Q05966) RecName: Full=Glycine-rich RNA-binding protein 10; &FB... 52 3e-05
AF005359_1(AF005359|pid:none) Nicotiana glutinosa RNA-binding pr... 52 3e-05
AK316998_1(AK316998|pid:none) Arabidopsis thaliana AT3G52150 mRN... 52 3e-05
AJ302060_1(AJ302060|pid:none) Oryza sativa mRNA for glycine rich... 52 3e-05
D26182_1(D26182|pid:none) Nicotiana sylvestris mRNA for RNA-bind... 52 3e-05
BX842646_292(BX842646|pid:none) Bdellovibrio bacteriovorus compl... 52 3e-05
FJ499499_1(FJ499499|pid:none) Metarhizium anisopliae cold respon... 52 3e-05
AY048973_1(AY048973|pid:none) Solanum tuberosum RNA-binding prot... 52 3e-05
(Q6DEY7) RecName: Full=Embryonic polyadenylate-binding protein; ... 52 3e-05
U30828_1(U30828|pid:none) Human splicing factor SRp55-2 (SRp55) ... 52 3e-05
DQ972964_1(DQ972964|pid:none) Sus scrofa SFRS6 mRNA, complete cds. 52 3e-05
EU964628_1(EU964628|pid:none) Zea mays clone 280456 glycine-rich... 52 3e-05
AF389431_1(AF389431|pid:none) Solanum tuberosum single-stranded ... 52 3e-05
AF011331_1(AF011331|pid:none) Oryza sativa glycine-rich protein ... 52 3e-05
BT059420_1(BT059420|pid:none) Salmo salar clone ssal-rgf-539-367... 52 3e-05
AF338225_1(AF338225|pid:none) Xenopus laevis embryonic poly(A) b... 52 4e-05
(Q9SVM8) RecName: Full=Glycine-rich RNA-binding protein 2, mitoc... 52 4e-05
BT086379_1(BT086379|pid:none) Zea mays full-length cDNA clone ZM... 52 4e-05
FB912265_1(FB912265|pid:none) Sequence 131538 from Patent WO2008... 52 4e-05
BT056110_1(BT056110|pid:none) Zea mays full-length cDNA clone ZM... 52 4e-05
CP000232_555(CP000232|pid:none) Moorella thermoacetica ATCC 3907... 52 4e-05
AK340903_1(AK340903|pid:none) Acyrthosiphon pisum ACYPI006929 mR... 52 4e-05
FB912181_1(FB912181|pid:none) Sequence 131454 from Patent WO2008... 52 4e-05
EU955477_1(EU955477|pid:none) Zea mays clone 1533996 unknown mRNA. 52 4e-05
FB872172_1(FB872172|pid:none) Sequence 91445 from Patent WO20080... 52 4e-05
BT064695_1(BT064695|pid:none) Zea mays full-length cDNA clone ZM... 52 4e-05
S31443(S31443) glycine-rich RNA-binding protein (clone A81) - Ar... 52 4e-05
EU979486_1(EU979486|pid:none) Ornithoctonus huwena clone HWE183 ... 52 4e-05
BT050206_1(BT050206|pid:none) Salmo salar clone ssal-evf-501-088... 52 4e-05
FB872168_1(FB872168|pid:none) Sequence 91441 from Patent WO20080... 52 4e-05
CP000240_802(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-13... 52 4e-05
BT040007_1(BT040007|pid:none) Zea mays full-length cDNA clone ZM... 52 4e-05
DQ788634_1(DQ788634|pid:none) Squalus acanthias putative polyade... 52 4e-05
EU954539_1(EU954539|pid:none) Zea mays clone 1469740 glycine-ric... 52 4e-05
BT038108_1(BT038108|pid:none) Zea mays full-length cDNA clone ZM... 52 4e-05
DQ440228_1(DQ440228|pid:none) Aedes aegypti clone AET-265 polyad... 52 4e-05
AC120985_6(AC120985|pid:none) Oryza sativa (japonica cultivar-gr... 52 4e-05
AY360385_9(AY360385|pid:none) Oryza sativa (japonica cultivar-gr... 52 4e-05
BT065686_1(BT065686|pid:none) Zea mays full-length cDNA clone ZM... 52 4e-05
EU955970_1(EU955970|pid:none) Zea mays clone 1554524 glycine-ric... 52 4e-05
CP000644_1611(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 52 5e-05
AF496715_1(AF496715|pid:none) Zea mays cultivar F_2 glycine-rich... 52 5e-05
CP000685_1297(CP000685|pid:none) Flavobacterium johnsoniae UW101... 52 5e-05
AL844504_170(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 52 5e-05
FB912257_1(FB912257|pid:none) Sequence 131530 from Patent WO2008... 52 5e-05
CP000930_2604(CP000930|pid:none) Heliobacterium modesticaldum Ic... 52 5e-05
AP008210_632(AP008210|pid:none) Oryza sativa (japonica cultivar-... 52 5e-05
CP000316_616(CP000316|pid:none) Polaromonas sp. JS666, complete ... 52 5e-05
AC134242_17(AC134242|pid:none) Medicago truncatula clone mth2-10... 52 5e-05
AC137701_16(AC137701|pid:none) Medicago truncatula clone mth2-35... 52 5e-05
AK005907_1(AK005907|pid:none) Mus musculus adult male testis cDN... 52 5e-05
AJ441311_1(AJ441311|pid:none) Rumex obtusifolius mRNA for putati... 52 5e-05
BT066563_1(BT066563|pid:none) Zea mays full-length cDNA clone ZM... 52 5e-05
CR382133_554(CR382133|pid:none) Debaryomyces hansenii strain CBS... 52 5e-05
AL731601_2(AL731601|pid:none) Oryza sativa genomic DNA, chromoso... 52 5e-05
AC005896_29(AC005896|pid:none) Arabidopsis thaliana chromosome 2... 52 5e-05
AB062909_1(AB062909|pid:none) Physcomitrella patens PpGRP1 mRNA ... 52 5e-05
(P27476) RecName: Full=Nuclear localization sequence-binding pro... 52 5e-05
CP000542_149(CP000542|pid:none) Verminephrobacter eiseniae EF01-... 52 5e-05
CP000462_1744(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 52 5e-05
(P49314) RecName: Full=31 kDa ribonucleoprotein, chloroplastic; ... 52 5e-05
FJ830848_1(FJ830848|pid:none) Triticum aestivum cp31BHv mRNA, pa... 52 5e-05
CP000777_2648(CP000777|pid:none) Leptospira biflexa serovar Pato... 52 5e-05
CR860292_1(CR860292|pid:none) Pongo abelii mRNA; cDNA DKFZp459D2... 51 6e-05
AC151621_26(AC151621|pid:none) Medicago truncatula clone mth2-14... 51 6e-05
EF086676_1(EF086676|pid:none) Picea sitchensis clone WS02733_K19... 51 6e-05
AB023044_25(AB023044|pid:none) Arabidopsis thaliana genomic DNA,... 51 6e-05
BC059662_1(BC059662|pid:none) Danio rerio poly A binding protein... 51 6e-05
EU969871_1(EU969871|pid:none) Zea mays clone 336682 glycine-rich... 51 6e-05
EU569289_1(EU569289|pid:none) Nicotiana tabacum glycine-rich RNA... 51 6e-05
FB872176_1(FB872176|pid:none) Sequence 91449 from Patent WO20080... 51 6e-05
AF370132_1(AF370132|pid:none) Arabidopsis thaliana unknown prote... 51 6e-05
AK297327_1(AK297327|pid:none) Homo sapiens cDNA FLJ51677 complet... 51 6e-05
BT039258_1(BT039258|pid:none) Zea mays full-length cDNA clone ZM... 51 6e-05
AE010300_3755(AE010300|pid:none) Leptospira interrogans serovar ... 51 6e-05
AE017347_305(AE017347|pid:none) Cryptococcus neoformans var. neo... 51 6e-05
(P10979) RecName: Full=Glycine-rich RNA-binding, abscisic acid-i... 51 6e-05
AC127168_23(AC127168|pid:none) Medicago truncatula clone mth2-15... 51 6e-05
(Q08937) RecName: Full=29 kDa ribonucleoprotein B, chloroplastic... 51 6e-05
AP006840_2840(AP006840|pid:none) Symbiobacterium thermophilum IA... 51 6e-05
(P60047) RecName: Full=Polyadenylate-binding protein 5; ... 51 6e-05
AL122118_1(AL122118|pid:none) Homo sapiens mRNA; cDNA DKFZp434O1... 51 6e-05
AY398370_1(AY398370|pid:none) Danio rerio clone RK105A4F05 poly(... 51 6e-05
AK067252_1(AK067252|pid:none) Oryza sativa Japonica Group cDNA c... 51 6e-05
BT084556_1(BT084556|pid:none) Zea mays full-length cDNA clone ZM... 51 6e-05
FN365483_2(FN365483|pid:none) Schistosoma mansoni genome sequenc... 51 6e-05
FB872162_1(FB872162|pid:none) Sequence 91435 from Patent WO20080... 51 6e-05
EU971223_1(EU971223|pid:none) Zea mays clone 359846 glycine-rich... 51 6e-05
AL662874_3(AL662874|pid:none) Human DNA sequence from clone RP13... 51 6e-05
U51555_1(U51555|pid:none) Tetrahymena thermophila nucleolar phos... 51 6e-05
BT052587_1(BT052587|pid:none) Medicago truncatula clone MTYFD_FE... 51 6e-05
BT036700_1(BT036700|pid:none) Zea mays full-length cDNA clone ZM... 51 6e-05
FN392320_99(FN392320|pid:none) Pichia pastoris GS115 chromosome ... 51 6e-05
BC044513_1(BC044513|pid:none) Danio rerio zgc:55855, mRNA (cDNA ... 51 6e-05
AC120985_5(AC120985|pid:none) Oryza sativa (japonica cultivar-gr... 51 6e-05
FN392322_179(FN392322|pid:none) Pichia pastoris GS115 chromosome... 51 8e-05
(A5DM21) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 51 8e-05
AF496713_1(AF496713|pid:none) Zea mays cultivar B_6 glycine-rich... 51 8e-05
CP001358_1996(CP001358|pid:none) Desulfovibrio desulfuricans sub... 51 8e-05
(Q03251) RecName: Full=Glycine-rich RNA-binding protein 8; AltNa... 51 8e-05
CP000533_110(CP000533|pid:none) Polaromonas naphthalenivorans CJ... 51 8e-05
CR940347_278(CR940347|pid:none) Theileria annulata strain Ankara... 51 8e-05
AF009411_1(AF009411|pid:none) Oryza sativa glycine-rich RNA-bind... 51 8e-05
AK067492_1(AK067492|pid:none) Oryza sativa Japonica Group cDNA c... 51 8e-05
AF496702_1(AF496702|pid:none) Zea mays cultivar H_1 glycine-rich... 51 8e-05
EU959113_1(EU959113|pid:none) Zea mays clone 210450 glycine-rich... 51 8e-05
BT035966_1(BT035966|pid:none) Zea mays full-length cDNA clone ZM... 51 8e-05
CU928174_487(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 51 8e-05
AF496726_1(AF496726|pid:none) Zea mays cultivar F_1 glycine-rich... 51 8e-05
D31715_1(D31715|pid:none) Arabidopsis thaliana gene for RNA-bind... 51 8e-05
BC070649_1(BC070649|pid:none) Xenopus laevis hypothetical protei... 51 8e-05
BC157792_1(BC157792|pid:none) Xenopus tropicalis hypothetical pr... 51 8e-05
AF496724_1(AF496724|pid:none) Zea mays cultivar D_7 glycine-rich... 51 8e-05
AF034945_1(AF034945|pid:none) Zea mays glycine-rich RNA binding ... 51 8e-05
BT014844_1(BT014844|pid:none) Arabidopsis thaliana At4g13860 gen... 51 8e-05
CP000512_4693(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 51 8e-05
AF496716_1(AF496716|pid:none) Zea mays cultivar B73 glycine-rich... 51 8e-05
AF496712_1(AF496712|pid:none) Zea mays cultivar H_4 glycine-rich... 51 8e-05
AF496703_1(AF496703|pid:none) Zea mays cultivar C_5 glycine-rich... 51 8e-05
BC061344_1(BC061344|pid:none) Xenopus tropicalis RNA binding mot... 51 8e-05
AE017342_517(AE017342|pid:none) Cryptococcus neoformans var. neo... 51 8e-05
AM445871_1(AM445871|pid:none) Vitis vinifera contig VV78X219207.... 51 8e-05
AL935272_3(AL935272|pid:none) Zebrafish DNA sequence from clone ... 51 8e-05
AM910993_34(AM910993|pid:none) Plasmodium knowlesi strain H chro... 51 8e-05
(Q8VE97) RecName: Full=Splicing factor, arginine/serine-rich 4; ... 50 1e-04
L05109_1(L05109|pid:none) Drosophila melanogaster poly(A)-bindin... 50 1e-04
AF496709_1(AF496709|pid:none) Zea mays cultivar H_5 glycine-rich... 50 1e-04
A48133(A48133) pre-mRNA splicing SRp75 - human &L14076_1(L14076... 50 1e-04
(Q2UK72) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 50 1e-04
AM910989_140(AM910989|pid:none) Plasmodium knowlesi strain H chr... 50 1e-04
(Q5EA36) RecName: Full=RNA-binding protein 14; AltName: Full=RNA... 50 1e-04
AK153230_1(AK153230|pid:none) Mus musculus bone marrow macrophag... 50 1e-04
(P21187) RecName: Full=Polyadenylate-binding protein; S... 50 1e-04
AF496708_1(AF496708|pid:none) Zea mays cultivar H_3 glycine-rich... 50 1e-04
CP000348_1691(CP000348|pid:none) Leptospira borgpetersenii serov... 50 1e-04
CP000828_2532(CP000828|pid:none) Acaryochloris marina MBIC11017,... 50 1e-04
AK291509_1(AK291509|pid:none) Homo sapiens cDNA FLJ76859 complet... 50 1e-04
(A2Q848) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 50 1e-04
(A1CRM1) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 50 1e-04
EF082899_1(EF082899|pid:none) Picea sitchensis clone WS0279_B19 ... 50 1e-04
EU960303_1(EU960303|pid:none) Zea mays clone 223385 glycine-rich... 50 1e-04
EF087603_1(EF087603|pid:none) Picea sitchensis clone WS02729_L07... 50 1e-04
AP006841_2166(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 50 1e-04
DQ648521_1(DQ648521|pid:none) Bombyx mori splicing factor argini... 50 1e-04
AK077648_1(AK077648|pid:none) Mus musculus 8 days embryo whole b... 50 1e-04
CU638744_475(CU638744|pid:none) Podospora anserina genomic DNA c... 50 1e-04
S30887(S30887)polyadenylate-binding protein - fruit fly (Drosoph... 50 1e-04
(Q08170) RecName: Full=Splicing factor, arginine/serine-rich 4; ... 50 1e-04
BT077560_1(BT077560|pid:none) Lepeophtheirus salmonis Pacific fo... 50 1e-04
AF496718_1(AF496718|pid:none) Zea mays cultivar CO109 glycine-ri... 50 1e-04
AP009552_4584(AP009552|pid:none) Microcystis aeruginosa NIES-843... 50 1e-04
(Q8C2Q3) RecName: Full=RNA-binding protein 14; AltName: Full=RNA... 50 1e-04
AF315633_1(AF315633|pid:none) Homo sapiens coactivator modulator... 50 1e-04
DQ972965_1(DQ972965|pid:none) Sus scrofa SFRS4 mRNA, complete cds. 50 1e-04
BT038752_1(BT038752|pid:none) Zea mays full-length cDNA clone ZM... 50 1e-04
AM746676_1878(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 50 1e-04
AF441128_1(AF441128|pid:none) Mus musculus CD-1 heterogeneous nu... 50 1e-04
CP000777_2941(CP000777|pid:none) Leptospira biflexa serovar Pato... 50 1e-04
AF496717_1(AF496717|pid:none) Zea mays cultivar I_1 glycine-rich... 50 1e-04
AP006841_2265(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 50 1e-04
AB168869_1(AB168869|pid:none) Macaca fascicularis testis cDNA, c... 50 1e-04
(O35479) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 50 1e-04
AK133840_1(AK133840|pid:none) Mus musculus 8 days embryo whole b... 50 1e-04
AK011307_1(AK011307|pid:none) Mus musculus 10 days embryo whole ... 50 1e-04
EU965676_1(EU965676|pid:none) Zea mays clone 287902 glycine-rich... 50 1e-04
AY184814_1(AY184814|pid:none) Rattus norvegicus heterogeneous nu... 50 1e-04
AF496723_1(AF496723|pid:none) Zea mays cultivar TX601 glycine-ri... 50 1e-04
FB912223_1(FB912223|pid:none) Sequence 131496 from Patent WO2008... 50 1e-04
CT005267_237(CT005267|pid:none) Leishmania major strain Friedlin... 50 1e-04
AJ237847_1(AJ237847|pid:none) Mus musculus mRNA for heterogeneou... 50 1e-04
(P82277) RecName: Full=30S ribosomal protein 2, chloroplastic; A... 50 1e-04
S20710(S20710) hypothetical protein, 16K - mouse &X52102_1(X521... 50 1e-04
DQ351905_1(DQ351905|pid:none) Homo sapiens heterogeneous nuclear... 50 1e-04
CP000316_4803(CP000316|pid:none) Polaromonas sp. JS666, complete... 50 1e-04
AF496719_1(AF496719|pid:none) Zea mays cultivar IVANA glycine-ri... 50 1e-04
S41766(S41766;S43202)heterogeneous nuclear ribonucleoprotein G -... 50 1e-04
BC093598_1(BC093598|pid:none) Rattus norvegicus heterogeneous nu... 50 1e-04
AP008213_1538(AP008213|pid:none) Oryza sativa (japonica cultivar... 50 1e-04
AK152039_1(AK152039|pid:none) Mus musculus bone marrow macrophag... 50 1e-04
AY394938_1(AY394938|pid:none) Danio rerio clone RK045A2G06 RNA b... 50 1e-04
AJ237846_1(AJ237846|pid:none) Mus musculus mRNA for heterogeneou... 50 1e-04
(A5A6M3) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 50 1e-04
AL109936_3(AL109936|pid:none) Human DNA sequence from clone RP5-... 50 1e-04
BX640912_1(BX640912|pid:none) Homo sapiens mRNA; cDNA DKFZp686A1... 50 1e-04
(A1D4K4) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 50 1e-04
AK297405_1(AK297405|pid:none) Homo sapiens cDNA FLJ53360 complet... 50 1e-04
Z23064_1(Z23064|pid:none) H.sapiens mRNA gene for hnRNP G protein. 50 1e-04
AK144682_1(AK144682|pid:none) Mus musculus lung RCB-0558 LLC cDN... 50 1e-04
AY070612_1(AY070612|pid:none) Drosophila melanogaster RE71384 fu... 50 1e-04
(Q6BI95) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 50 1e-04
AE014297_3585(AE014297|pid:none) Drosophila melanogaster chromos... 50 1e-04
CR860678_1(CR860678|pid:none) Pongo abelii mRNA; cDNA DKFZp459K1... 50 1e-04
AK300029_1(AK300029|pid:none) Homo sapiens cDNA FLJ54544 complet... 50 1e-04
BX548175_2577(BX548175|pid:none) Prochlorococcus marinus MIT9313... 50 1e-04
BC067153_1(BC067153|pid:none) Danio rerio zgc:56141, mRNA (cDNA ... 50 1e-04
AJ719324_1(AJ719324|pid:none) Gallus gallus mRNA for hypothetica... 50 1e-04
AE014297_3588(AE014297|pid:none) Drosophila melanogaster chromos... 50 1e-04
AK313142_1(AK313142|pid:none) Homo sapiens cDNA, FLJ93632, highl... 50 1e-04
BC004679_1(BC004679|pid:none) Mus musculus heterogeneous nuclear... 50 1e-04
CU928171_601(CU928171|pid:none) Kluyveromyces thermotolerans str... 50 1e-04
CU633900_930(CU633900|pid:none) Podospora anserina genomic DNA c... 50 1e-04
(O43390) RecName: Full=Heterogeneous nuclear ribonucleoprotein R... 50 1e-04
BC133299_1(BC133299|pid:none) Bos taurus heterogeneous nuclear r... 50 1e-04
U70731_1(U70731|pid:none) Emericella nidulans putative poly(A)-b... 50 2e-04
AK162457_1(AK162457|pid:none) Mus musculus 12 days embryo embryo... 50 2e-04
CP001101_100(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 50 2e-04
Z78536_2(Z78536|pid:none) Caenorhabditis elegans Cosmid C07A4, c... 50 2e-04
AE015928_1887(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 50 2e-04
AM778891_13(AM778891|pid:none) Microcystis aeruginosa PCC 7806 g... 50 2e-04
AF034741_1(AF034741|pid:none) Macropus eugenii heterogeneous nuc... 50 2e-04
CP000348_2308(CP000348|pid:none) Leptospira borgpetersenii serov... 50 2e-04
AC120985_7(AC120985|pid:none) Oryza sativa (japonica cultivar-gr... 50 2e-04
AY050483_1(AY050483|pid:none) Prunus avium putative glycine-rich... 50 2e-04
FB872112_1(FB872112|pid:none) Sequence 91385 from Patent WO20080... 50 2e-04
Z95327_4(Z95327|pid:none) Human DNA sequence from clone RP3-347M... 50 2e-04
BT004860_1(BT004860|pid:none) Drosophila melanogaster RE27227 fu... 50 2e-04
AE017342_233(AE017342|pid:none) Cryptococcus neoformans var. neo... 50 2e-04
AJ245939_1(AJ245939|pid:none) Ricinus communis mRNA for glycine-... 50 2e-04
BC154222_1(BC154222|pid:none) Danio rerio zgc:85696, mRNA (cDNA ... 50 2e-04
DQ646407_1(DQ646407|pid:none) Bombyx mori poly A binding protein... 50 2e-04
FM992688_313(FM992688|pid:none) Candida dubliniensis CD36 chromo... 50 2e-04
AE014297_2648(AE014297|pid:none) Drosophila melanogaster chromos... 50 2e-04
AM778891_14(AM778891|pid:none) Microcystis aeruginosa PCC 7806 g... 50 2e-04
CP000462_72(CP000462|pid:none) Aeromonas hydrophila subsp. hydro... 50 2e-04
BC076931_1(BC076931|pid:none) Xenopus tropicalis polyadenylate-b... 50 2e-04
CP001324_684(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 50 2e-04
AL732352_13(AL732352|pid:none) Oryza sativa genomic DNA, chromos... 49 2e-04
CP000828_527(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 49 2e-04
FB912187_1(FB912187|pid:none) Sequence 131460 from Patent WO2008... 49 2e-04
BC046668_1(BC046668|pid:none) Xenopus laevis similar to splicing... 49 2e-04
AL049711_26(AL049711|pid:none) Arabidopsis thaliana DNA chromoso... 49 2e-04
BC065640_1(BC065640|pid:none) Danio rerio zgc:77282, mRNA (cDNA ... 49 2e-04
FN320327_1(FN320327|pid:none) Schistosoma japonicum isolate Anhu... 49 2e-04
BT058726_1(BT058726|pid:none) Salmo salar clone ssal-rgf-001-131... 49 2e-04
AM502227_10(AM502227|pid:none) Leishmania infantum chromosome 9. 49 2e-04
AM920437_1689(AM920437|pid:none) Penicillium chrysogenum Wiscons... 49 2e-04
BT044808_1(BT044808|pid:none) Salmo salar clone ssal-rgf-504-108... 49 2e-04
AB023046_18(AB023046|pid:none) Arabidopsis thaliana genomic DNA,... 49 2e-04
AJ717349_1(AJ717349|pid:none) Danio rerio mRNA for RNA binding m... 49 2e-04

>D31712_1(D31712|pid:none) Arabidopsis thaliana gene for RNA-binding
protein cp31, complete cds, clone: lambda 22.
&S53492(S53492;S53493;S55447)
Length = 314

Score = 65.1 bits (157), Expect = 4e-09
Identities = 29/78 (37%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +1

Query: 172 AHRIFVGNLTENVESSTLETAFAEFGKVLSVRII--KKKFKSNTFGFVDMEDLETANKAV 345
A R++VGNL +V++ LE F+E GKV+ R++ ++ +S FGFV M D++ N+A+
Sbjct: 228 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 287

Query: 346 AAINGREFDGKQVNVEIA 399
+A++G+ +G+ + V +A
Sbjct: 288 SALDGQNLEGRAIRVNVA 305

Score = 43.9 bits (102), Expect = 0.010
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +1

Query: 733 LFVRNIPYSFDDVKLLETFKDCSPK-SAHVIVNKHTNRSKGFGFVEFDDVANQQKGLT-L 906
++V N+P+ D+ +L + F + A V+ ++ T RS+GFGFV DV + ++ L
Sbjct: 231 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 290

Query: 907 NKLSVESRELSVKIALVPEPR 969
+ ++E R + V +A PR
Sbjct: 291 DGQNLEGRAIRVNVAEERPPR 311

Score = 42.0 bits (97), Expect = 0.039
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1

Query: 178 RIFVGNLTENVESSTLETAFAEFGKVLSVRII--KKKFKSNTFGFVDMEDLETANKAVAA 351
++FVGNL +V S L F + G V +I ++ +S FGFV M ++ A AV
Sbjct: 136 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 195

Query: 352 INGREFDGKQVNVEIA 399
N + +G+ + V A
Sbjct: 196 FNRYDLNGRLLTVNKA 211

Score = 37.4 bits (85), Expect = 0.96
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1

Query: 733 LFVRNIPYSFDDVKLLETFKDCSP-KSAHVIVNKHTNRSKGFGFVEFDDVANQQKGL-TL 906
LFV N+ Y + L F+ + A VI N+ T++S+GFGFV V + +
Sbjct: 137 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 196

Query: 907 NKLSVESRELSVKIA 951
N+ + R L+V A
Sbjct: 197 NRYDLNGRLLTVNKA 211

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,122,457,355
Number of extensions: 17672075
Number of successful extensions: 61921
Number of sequences better than 10.0: 2837
Number of HSP's gapped: 60728
Number of HSP's successfully gapped: 4404
Length of query: 371
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 241
Effective length of database: 630,428,194
Effective search space: 151933194754
Effective search space used: 151933194754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.86 gvh: 0.41 alm: 0.45 top: 0.43 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.33
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: Golgi
4.0 %: endoplasmic reticulum

>> prediction for Contig-U15076-1 is cyt

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 4
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 5
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 4
FC-IC (SUB) 1