Contig-U15070-1 |
Contig ID |
Contig-U15070-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1898 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
4750926 |
End point |
4749104 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
10 |
Number of EST |
15 |
Link to clone list |
U15070 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.11 |
Homology vs DNA |
Query= Contig-U15070-1 (Contig-U15070-1Q) /CSM_Contig/Contig-U15070-1Q.Seq.d (1898 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ376097) Dictyostelium discoideum cDNA clone:ddc21n03, 3' ... 1423 0.0 1 (BJ428123) Dictyostelium discoideum cDNA clone:ddv10g23, 3' ... 1394 0.0 1 (BJ376088) Dictyostelium discoideum cDNA clone:ddc21l03, 3' ... 1378 0.0 1 (BJ409994) Dictyostelium discoideum cDNA clone:ddv10g23, 5' ... 1320 0.0 1 (BJ415000) Dictyostelium discoideum cDNA clone:ddv21j02, 5' ... 1302 0.0 1 (BJ402895) Dictyostelium discoideum cDNA clone:dds18i16, 3' ... 1257 0.0 1 (BJ376052) Dictyostelium discoideum cDNA clone:ddc21d03, 3' ... 1084 0.0 2 (BJ402846) Dictyostelium discoideum cDNA clone:dds18o11, 3' ... 948 0.0 1 (BJ362292) Dictyostelium discoideum cDNA clone:ddc21n03, 5' ... 884 0.0 1 (BJ433216) Dictyostelium discoideum cDNA clone:ddv21j02, 3' ... 852 0.0 1 (BJ398216) Dictyostelium discoideum cDNA clone:dds11b17, 3' ... 793 0.0 1 (BJ376045) Dictyostelium discoideum cDNA clone:ddc21b04, 3' ... 325 e-119 4 (BJ428686) Dictyostelium discoideum cDNA clone:ddv12i21, 3' ... 228 6e-55 1 (CI017218) Oryza sativa Japonica Group cDNA, clone: 007-M028... 214 9e-51 1 (CI017336) Oryza sativa Japonica Group cDNA, clone: 007-M029... 212 2e-50 2 (CI040770) Oryza sativa Japonica Group cDNA, clone: 009-M198... 212 4e-50 1 (CI033851) Oryza sativa Japonica Group cDNA, clone: 009-M115... 210 1e-49 1 (CI029854) Oryza sativa Japonica Group cDNA, clone: 009-M069... 210 1e-49 1 (CI021267) Oryza sativa Japonica Group cDNA, clone: 007-M074... 210 1e-49 1 (CI018344) Oryza sativa Japonica Group cDNA, clone: 007-M041... 210 1e-49 1 (CI016729) Oryza sativa Japonica Group cDNA, clone: 007-M022... 210 1e-49 1 (CI035813) Oryza sativa Japonica Group cDNA, clone: 009-M140... 200 2e-49 2 (CI038044) Oryza sativa Japonica Group cDNA, clone: 009-M166... 208 6e-49 1 (CI035256) Oryza sativa Japonica Group cDNA, clone: 009-M133... 208 6e-49 1 (CI029929) Oryza sativa Japonica Group cDNA, clone: 009-M069... 208 6e-49 1 (CI023408) Oryza sativa Japonica Group cDNA, clone: 007-M098... 208 6e-49 1 (CI023096) Oryza sativa Japonica Group cDNA, clone: 007-M095... 208 6e-49 1 (CI021570) Oryza sativa Japonica Group cDNA, clone: 007-M077... 208 6e-49 1 (CI020697) Oryza sativa Japonica Group cDNA, clone: 007-M067... 208 6e-49 1 (CI001353) Oryza sativa Japonica Group cDNA, clone: 003-M022... 208 6e-49 1 (CI020179) Oryza sativa Japonica Group cDNA, clone: 007-M061... 206 9e-49 2 (CI022495) Oryza sativa Japonica Group cDNA, clone: 007-M088... 206 1e-48 2 (CI064787) Oryza sativa Japonica Group cDNA, clone: 014-M100... 206 2e-48 1 (CI064524) Oryza sativa Japonica Group cDNA, clone: 014-M096... 206 2e-48 1 (CI064008) Oryza sativa Japonica Group cDNA, clone: 014-M088... 206 2e-48 1 (CI063890) Oryza sativa Japonica Group cDNA, clone: 014-M087... 206 2e-48 1 (CI062737) Oryza sativa Japonica Group cDNA, clone: 014-M070... 206 2e-48 1 (CI060288) Oryza sativa Japonica Group cDNA, clone: 014-M031... 206 2e-48 1 (CI060272) Oryza sativa Japonica Group cDNA, clone: 014-M031... 206 2e-48 1 (CI060062) Oryza sativa Japonica Group cDNA, clone: 014-M028... 206 2e-48 1 (CI058750) Oryza sativa Japonica Group cDNA, clone: 014-M008... 206 2e-48 1 (CI057987) Oryza sativa Japonica Group cDNA, clone: 013-M097... 206 2e-48 1 (CI057751) Oryza sativa Japonica Group cDNA, clone: 013-M093... 206 2e-48 1 (CI057602) Oryza sativa Japonica Group cDNA, clone: 013-M090... 206 2e-48 1 (CI057539) Oryza sativa Japonica Group cDNA, clone: 013-M089... 206 2e-48 1 (CI057456) Oryza sativa Japonica Group cDNA, clone: 013-M087... 206 2e-48 1 (CI057364) Oryza sativa Japonica Group cDNA, clone: 013-M085... 206 2e-48 1 (CI057321) Oryza sativa Japonica Group cDNA, clone: 013-M085... 206 2e-48 1 (CI057159) Oryza sativa Japonica Group cDNA, clone: 013-M082... 206 2e-48 1 (CI057078) Oryza sativa Japonica Group cDNA, clone: 013-M080... 206 2e-48 1 (CI057075) Oryza sativa Japonica Group cDNA, clone: 013-M080... 206 2e-48 1 (CI056792) Oryza sativa Japonica Group cDNA, clone: 013-M075... 206 2e-48 1 (CI056766) Oryza sativa Japonica Group cDNA, clone: 013-M075... 206 2e-48 1 (CI056764) Oryza sativa Japonica Group cDNA, clone: 013-M075... 206 2e-48 1 (CI056533) Oryza sativa Japonica Group cDNA, clone: 013-M071... 206 2e-48 1 (CI056345) Oryza sativa Japonica Group cDNA, clone: 013-M068... 206 2e-48 1 (CI056204) Oryza sativa Japonica Group cDNA, clone: 013-M066... 206 2e-48 1 (CI056047) Oryza sativa Japonica Group cDNA, clone: 013-M063... 206 2e-48 1 (CI055958) Oryza sativa Japonica Group cDNA, clone: 013-M062... 206 2e-48 1 (CI055881) Oryza sativa Japonica Group cDNA, clone: 013-M061... 206 2e-48 1 (CI055798) Oryza sativa Japonica Group cDNA, clone: 013-M059... 206 2e-48 1 (CI055793) Oryza sativa Japonica Group cDNA, clone: 013-M059... 206 2e-48 1 (CI055757) Oryza sativa Japonica Group cDNA, clone: 013-M059... 206 2e-48 1 (CI055720) Oryza sativa Japonica Group cDNA, clone: 013-M058... 206 2e-48 1 (CI055516) Oryza sativa Japonica Group cDNA, clone: 013-M054... 206 2e-48 1 (CI055427) Oryza sativa Japonica Group cDNA, clone: 013-M053... 206 2e-48 1 (CI055314) Oryza sativa Japonica Group cDNA, clone: 013-M051... 206 2e-48 1 (CI054999) Oryza sativa Japonica Group cDNA, clone: 013-M045... 206 2e-48 1 (CI054971) Oryza sativa Japonica Group cDNA, clone: 013-M044... 206 2e-48 1 (CI054964) Oryza sativa Japonica Group cDNA, clone: 013-M044... 206 2e-48 1 (CI054904) Oryza sativa Japonica Group cDNA, clone: 013-M043... 206 2e-48 1 (CI054870) Oryza sativa Japonica Group cDNA, clone: 013-M042... 206 2e-48 1 (CI054603) Oryza sativa Japonica Group cDNA, clone: 013-M038... 206 2e-48 1 (CI054568) Oryza sativa Japonica Group cDNA, clone: 013-M037... 206 2e-48 1 (CI054421) Oryza sativa Japonica Group cDNA, clone: 013-M035... 206 2e-48 1 (CI054355) Oryza sativa Japonica Group cDNA, clone: 013-M034... 206 2e-48 1 (CI054324) Oryza sativa Japonica Group cDNA, clone: 013-M033... 206 2e-48 1 (CI053956) Oryza sativa Japonica Group cDNA, clone: 013-M026... 206 2e-48 1 (CI053873) Oryza sativa Japonica Group cDNA, clone: 013-M024... 206 2e-48 1 (CI053428) Oryza sativa Japonica Group cDNA, clone: 013-M016... 206 2e-48 1 (CI053411) Oryza sativa Japonica Group cDNA, clone: 013-M016... 206 2e-48 1 (CI053217) Oryza sativa Japonica Group cDNA, clone: 013-M012... 206 2e-48 1 (CI052604) Oryza sativa Japonica Group cDNA, clone: 013-M002... 206 2e-48 1 (CI052555) Oryza sativa Japonica Group cDNA, clone: 013-M001... 206 2e-48 1 (CI044594) Oryza sativa Japonica Group cDNA, clone: 011-M063... 206 2e-48 1 (CI037365) Oryza sativa Japonica Group cDNA, clone: 009-M158... 206 2e-48 1 (CI036406) Oryza sativa Japonica Group cDNA, clone: 009-M147... 206 2e-48 1 (CI036159) Oryza sativa Japonica Group cDNA, clone: 009-M144... 206 2e-48 1 (CI035749) Oryza sativa Japonica Group cDNA, clone: 009-M139... 206 2e-48 1 (CI032862) Oryza sativa Japonica Group cDNA, clone: 009-M103... 206 2e-48 1 (CI030845) Oryza sativa Japonica Group cDNA, clone: 009-M080... 206 2e-48 1 (CI029896) Oryza sativa Japonica Group cDNA, clone: 009-M069... 206 2e-48 1 (CI029421) Oryza sativa Japonica Group cDNA, clone: 009-M064... 206 2e-48 1 (CI027621) Oryza sativa Japonica Group cDNA, clone: 009-M042... 206 2e-48 1 (CI026969) Oryza sativa Japonica Group cDNA, clone: 009-M035... 206 2e-48 1 (CI026424) Oryza sativa Japonica Group cDNA, clone: 009-M029... 206 2e-48 1 (CI026205) Oryza sativa Japonica Group cDNA, clone: 009-M026... 206 2e-48 1 (CI024857) Oryza sativa Japonica Group cDNA, clone: 009-M011... 206 2e-48 1 (CI024248) Oryza sativa Japonica Group cDNA, clone: 009-M004... 206 2e-48 1 (CI023832) Oryza sativa Japonica Group cDNA, clone: 008-M004... 206 2e-48 1
>(BJ376097) Dictyostelium discoideum cDNA clone:ddc21n03, 3' end, single read. Length = 751
Score = 1423 bits (718), Expect = 0.0 Identities = 720/721 (99%) Strand = Plus / Minus
Query: 1147 agcaatgtttaattttactattatcattattgataccattattcttatcattggttggat 1206 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 751 agcaatgtttaattttactatnatcattattgataccattattcttatcattggttggat 692
Query: 1207 ataatgttttctttggtattttcggaataatctattatttaatattcattggatattcat 1266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 691 ataatgttttctttggtattttcggaataatctattatttaatattcattggatattcat 632
Query: 1267 tatttcataaattaccagaagacgagaaaaaagaagatcgtgatattgaaatgggtgaaa 1326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 tatttcataaattaccagaagacgagaaaaaagaagatcgtgatattgaaatgggtgaaa 572
Query: 1327 gaaagaatggtgcaaatgaacaaacgacagcatcaacaacagcatcatcaacagaatccg 1386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 gaaagaatggtgcaaatgaacaaacgacagcatcaacaacagcatcatcaacagaatccg 512
Query: 1387 acgacgaagacaccgatgaagaagatgaacatgacgaaccattatataaaggtgtatttt 1446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 acgacgaagacaccgatgaagaagatgaacatgacgaaccattatataaaggtgtatttt 452
Query: 1447 atttatttttaggtggtcttttaatttgttactttagtaaaccattcattgactcaattg 1506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 atttatttttaggtggtcttttaatttgttactttagtaaaccattcattgactcaattg 392
Query: 1507 tatcattagcatcatcttgggaaattaatccaatcttattagcattctttttagctccaa 1566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 tatcattagcatcatcttgggaaattaatccaatcttattagcattctttttagctccaa 332
Query: 1567 ttgcttcagaaatgcctgaaatcttagaatcaatttcattatcaagaaaaggtcattctc 1626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 ttgcttcagaaatgcctgaaatcttagaatcaatttcattatcaagaaaaggtcattctc 272
Query: 1627 aaagtattaatatagctttttcaaatttaattggtggtacaataaccaaaacaactttat 1686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 aaagtattaatatagctttttcaaatttaattggtggtacaataaccaaaacaactttat 212
Query: 1687 taatgggtattttctgtttctttggagttgttaaaggatttgaatgggaatcacctacat 1746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 taatgggtattttctgtttctttggagttgttaaaggatttgaatgggaatcacctacat 152
Query: 1747 attcattatgcttgatattattgacaatttgtgcagctgcagcatctggtattggttatt 1806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 attcattatgcttgatattattgacaatttgtgcagctgcagcatctggtattggttatt 92
Query: 1807 ttgtgaacaagataaaacaacaacatggtttaatgttattcgctattttcttattagctg 1866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 ttgtgaacaagataaaacaacaacatggtttaatgttattcgctattttcttattagctg 32
Query: 1867 g 1867 | Sbjct: 31 g 31
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,889,402,354 Number of extensions: 124420759 Number of successful extensions: 11406154 Number of sequences better than 10.0: 40116 Length of query: 1898 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1874 Effective length of database: 97,308,875,965 Effective search space: 182356833558410 Effective search space used: 182356833558410 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.14 |
Homology vs Protein |
Query= Contig-U15070-1 (Contig-U15070-1Q) /CSM_Contig/Contig-U15070-1Q.Seq.d (1898 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
CP001399_2159(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 53 3e-05 CP001400_2012(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 53 3e-05 AE006641_2942(AE006641|pid:none) Sulfolobus solfataricus P2, com... 52 8e-05 AF156105_3(AF156105|pid:none) Simian virus 40 strain VA45-54-2, ... 51 1e-04 AF038616_3(AF038616|pid:none) Simian virus 40 strain K661, compl... 51 1e-04 AF168994_2(AF168994|pid:none) Simian virus 40 strain T302, compl... 51 1e-04 AY271816_2(AY271816|pid:none) Simian virus 40 strain PML-1EK, co... 51 1e-04 AF156105_2(AF156105|pid:none) Simian virus 40 strain VA45-54-2, ... 51 1e-04 DQ660375_3(DQ660375|pid:none) Simian virus 40 isolate sv-imb, co... 51 1e-04 AF168994_3(AF168994|pid:none) Simian virus 40 strain T302, compl... 51 1e-04 DQ218418_2(DQ218418|pid:none) Simian virus 40 strain YNQD38, com... 50 2e-04 DQ218418_3(DQ218418|pid:none) Simian virus 40 strain YNQD38, com... 50 2e-04 V01109_6(V01109|pid:none) Human BK virus (strain MM) genome. (Cl... 47 0.002 AB211376_2(AB211376|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB260033_2(AB260033|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB211370_2(AB211370|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB263916_2(AB263916|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB263925_2(AB263925|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AY628233_3(AY628233|pid:none) BK polyomavirus isolate BKV CAP-m9... 47 0.003 AB263920_3(AB263920|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 (P03094) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 47 0.003 AB211390_2(AB211390|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 X56914_2(X56914|pid:none) Human polyomavirus BK (BKV) late regio... 47 0.003 AB263929_2(AB263929|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AY628234_3(AY628234|pid:none) BK polyomavirus isolate BKV HC-u2,... 47 0.003 AB301101_2(AB301101|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB269850_3(AB269850|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB301087_2(AB301087|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB211369_2(AB211369|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AY628235_3(AY628235|pid:none) BK polyomavirus isolate BKV HC-u5,... 47 0.003 AB269850_2(AB269850|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AY628233_2(AY628233|pid:none) BK polyomavirus isolate BKV CAP-m9... 47 0.003 AB211387_3(AB211387|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB211370_3(AB211370|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AY628235_2(AY628235|pid:none) BK polyomavirus isolate BKV HC-u5,... 47 0.003 AB263916_3(AB263916|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB269854_2(AB269854|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 DQ989795_3(DQ989795|pid:none) BK polyomavirus isolate PittVR1, c... 47 0.003 AB263929_3(AB263929|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB301101_3(AB301101|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 V01108_2(V01108|pid:none) Human BK virus (strain Dunlop) genome.... 47 0.003 AB211372_2(AB211372|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB211379_2(AB211379|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB263920_2(AB263920|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AY628225_2(AY628225|pid:none) BK polyomavirus isolate BKV HI-u5,... 47 0.003 AB211377_2(AB211377|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB263932_3(AB263932|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 DQ989794_2(DQ989794|pid:none) BK polyomavirus isolate PittVM1, c... 47 0.003 AB263931_3(AB263931|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 AB301087_3(AB301087|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 DQ989795_2(DQ989795|pid:none) BK polyomavirus isolate PittVR1, c... 47 0.003 AB263912_3(AB263912|pid:none) BK polyomavirus DNA, complete geno... 47 0.003 CP001399_1018(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 46 0.004 CP001400_931(CP001400|pid:none) Sulfolobus islandicus M.14.25, c... 46 0.004 CP001401_987(CP001401|pid:none) Sulfolobus islandicus M.16.27, c... 46 0.004 AY614708_3(AY614708|pid:none) Simian agent 12, complete genome. ... 45 0.009 AB127345_2(AB127345|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AB048555_3(AB048555|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AF281623_2(AF281623|pid:none) JC polyomavirus strain 801B agnopr... 45 0.009 AB048567_3(AB048567|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB048548_2(AB048548|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AF281610_3(AF281610|pid:none) JC virus strain 404 agnoprotein, V... 45 0.009 AB038249_3(AB038249|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AF396427_3(AF396427|pid:none) JC polyomavirus strain 732A agnopr... 45 0.009 AF295732_3(AF295732|pid:none) JC virus strain 310A, complete gen... 45 0.009 AF300966_3(AF300966|pid:none) JC polyomavirus strain 716A, compl... 45 0.009 AB048568_2(AB048568|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB038250_2(AB038250|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AB127351_3(AB127351|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AB362362_2(AB362362|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AF281625_2(AF281625|pid:none) JC polyomavirus strain 803A agnopr... 45 0.009 AF281609_3(AF281609|pid:none) JC virus strain 403 agnoprotein, V... 45 0.009 (Q3L6L8) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 45 0.009 AB048568_3(AB048568|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AF281614_3(AF281614|pid:none) JC virus strain 603 agnoprotein, V... 45 0.009 AY386378_3(AY386378|pid:none) JC virus isolate 335C, complete ge... 45 0.009 AB048575_3(AB048575|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB092584_3(AB092584|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB048546_3(AB048546|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB038249_2(AB038249|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AB048555_2(AB048555|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AY536243_2(AY536243|pid:none) JC virus isolate SA27_03 genotype ... 45 0.009 AB081618_3(AB081618|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB081008_2(AB081008|pid:none) JC virus DNA, complete genome, iso... 45 0.009 CP001402_1018(CP001402|pid:none) Sulfolobus islandicus M.16.4, c... 45 0.009 AB048554_3(AB048554|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB077879_3(AB077879|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB074575_3(AB074575|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB127012_2(AB127012|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 DQ875211_2(DQ875211|pid:none) JC polyomavirus isolate HWM, compl... 45 0.009 AB113119_2(AB113119|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AB185020_3(AB185020|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AF396434_3(AF396434|pid:none) JC virus #810B; WF4 agnoprotein, V... 45 0.009 AF295732_2(AF295732|pid:none) JC virus strain 310A, complete gen... 45 0.009 AB103402_3(AB103402|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB038252_2(AB038252|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AB081021_2(AB081021|pid:none) JC virus DNA, complete genome, iso... 45 0.009 U61771_3(U61771|pid:none) Human JC virus complete genome. 45 0.009 AB048563_2(AB048563|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AF396430_3(AF396430|pid:none) JC virus #811A; PNG8 agnoprotein, ... 45 0.009 AF396427_2(AF396427|pid:none) JC polyomavirus strain 732A agnopr... 45 0.009 AB081614_2(AB081614|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AF295739_3(AF295739|pid:none) JC virus strain 703C agnoprotein, ... 45 0.009 AB092584_2(AB092584|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AF396433_2(AF396433|pid:none) JC virus #809B; V16 agnoprotein, V... 45 0.009 AB127344_3(AB127344|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AY121910_2(AY121910|pid:none) JC virus strain 255A, complete gen... 45 0.009 AF281614_2(AF281614|pid:none) JC virus strain 603 agnoprotein, V... 45 0.009 AF396425_2(AF396425|pid:none) JC virus #253E; NC23 agnoprotein, ... 45 0.009 AF396431_2(AF396431|pid:none) JC virus #806B; F53 agnoprotein, V... 45 0.009 AB190451_2(AB190451|pid:none) JC polyomavirus genes for agnoprot... 45 0.009 U73500_3(U73500|pid:none) JC virus type 3, #308, complete genome. 45 0.009 AB190452_2(AB190452|pid:none) JC polyomavirus genes for agnoprot... 45 0.009 AF396434_2(AF396434|pid:none) JC virus #810B; WF4 agnoprotein, V... 45 0.009 AB074581_3(AB074581|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AF300966_2(AF300966|pid:none) JC polyomavirus strain 716A, compl... 45 0.009 U61771_2(U61771|pid:none) Human JC virus complete genome. 45 0.009 AB048563_3(AB048563|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AF281624_2(AF281624|pid:none) JC polyomavirus strain 802B agnopr... 45 0.009 AY386374_2(AY386374|pid:none) JC virus isolate 339A, complete ge... 45 0.009 AY386374_3(AY386374|pid:none) JC virus isolate 339A, complete ge... 45 0.009 AB048553_3(AB048553|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB092585_3(AB092585|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AY536243_3(AY536243|pid:none) JC virus isolate SA27_03 genotype ... 45 0.009 AB127343_3(AB127343|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AF281623_3(AF281623|pid:none) JC polyomavirus strain 801B agnopr... 45 0.009 U73500_2(U73500|pid:none) JC virus type 3, #308, complete genome. 45 0.009 AB077879_2(AB077879|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AF300945_2(AF300945|pid:none) JC polyomavirus strain 720B, compl... 45 0.009 EU835189_1(EU835189|pid:none) JC polyomavirus strain SANICD1_04 ... 45 0.009 AF281609_2(AF281609|pid:none) JC virus strain 403 agnoprotein, V... 45 0.009 AB048551_2(AB048551|pid:none) JC virus DNA, complete genome, iso... 45 0.009 AB038251_3(AB038251|pid:none) JC polyomavirus DNA, complete geno... 45 0.009 AF281601_2(AF281601|pid:none) JC virus strain 127B agnoprotein, ... 45 0.009 AF281611_3(AF281611|pid:none) JC virus strain 405 agnoprotein, V... 45 0.012 AB127347_3(AB127347|pid:none) JC polyomavirus DNA, complete geno... 44 0.016 AB127347_2(AB127347|pid:none) JC polyomavirus DNA, complete geno... 44 0.016 CP000300_394(CP000300|pid:none) Methanococcoides burtonii DSM 62... 42 0.060 AE017285_2604(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 42 0.10 CP000742_384(CP000742|pid:none) Methanococcus vannielii SB, comp... 41 0.18 AE006641_1059(AE006641|pid:none) Sulfolobus solfataricus P2, com... 41 0.18 AF224509_3(AF224509|pid:none) Bacteroides cellulosolvens cellulo... 39 0.51 CP001052_3783(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 39 0.51 CP000270_4304(CP000270|pid:none) Burkholderia xenovorans LB400 c... 39 0.51 CP000155_3516(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 39 0.51 CP000644_426(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 39 0.87 CP001107_2317(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 39 0.87 CU458896_4689(CU458896|pid:none) Mycobacterium abscessus chromos... 39 0.87 AP009044_2484(AP009044|pid:none) Corynebacterium glutamicum R DN... 38 1.1 CP001322_1851(CP001322|pid:none) Desulfatibacillum alkenivorans ... 38 1.1 CP000612_2479(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 38 1.1 CP000931_385(CP000931|pid:none) Shewanella halifaxensis HAW-EB4,... 38 1.1 AY212801_19(AY212801|pid:none) Uncultured bacterium clone VIIC10... 38 1.5 CP000851_3864(CP000851|pid:none) Shewanella pealeana ATCC 700345... 38 1.5 CP000569_1332(CP000569|pid:none) Actinobacillus pleuropneumoniae... 37 1.9 CP000472_301(CP000472|pid:none) Shewanella piezotolerans WP3, co... 37 1.9 CP000300_761(CP000300|pid:none) Methanococcoides burtonii DSM 62... 37 1.9 CP000687_1324(CP000687|pid:none) Actinobacillus pleuropneumoniae... 37 1.9 CP001091_1408(CP001091|pid:none) Actinobacillus pleuropneumoniae... 37 1.9 AE010299_2940(AE010299|pid:none) Methanosarcina acetivorans str.... 37 1.9 CP000959_922(CP000959|pid:none) Burkholderia cenocepacia MC0-3 c... 37 1.9 CP001132_727(CP001132|pid:none) Acidithiobacillus ferrooxidans A... 37 1.9 AE010299_2742(AE010299|pid:none) Methanosarcina acetivorans str.... 37 1.9 AJ006017_1(AJ006017|pid:none) Hamster polyomavirus VP3 gene for ... 37 2.5 EF186666_5(EF186666|pid:none) Murine pneumotropic virus strain K... 37 2.5 EF186666_4(EF186666|pid:none) Murine pneumotropic virus strain K... 37 2.5 CP000462_3690(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 37 2.5 M55904_5(M55904|pid:none) Murine pneumotropic virus, complete ge... 37 2.5 VVVPK2(D37945)coat protein VP2 - mouse polyomavirus (strain Kilh... 37 2.5 AJ006016_1(AJ006016|pid:none) Hamster polyomavirus VP2 gene for ... 37 2.5 (P24849) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 37 3.3 D13942_3(D13942|pid:none) Bovine polyomavirus DNA, complete geno... 37 3.3 CP000096_541(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 37 3.3 (P03096) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 37 3.3 J02288_6(J02288|pid:none) Murine polyomavirus strain A2, complet... 37 3.3 (P12908) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 37 3.3 AM427716_3(AM427716|pid:none) Vitis vinifera contig VV78X140130.... 37 3.3 CP000323_181(CP000323|pid:none) Psychrobacter cryohalolentis K5,... 37 3.3 CP001087_3861(CP001087|pid:none) Desulfobacterium autotrophicum ... 37 3.3 CP000615_622(CP000615|pid:none) Burkholderia vietnamiensis G4 ch... 36 4.3 CP000361_171(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 36 4.3 CP000606_3496(CP000606|pid:none) Shewanella loihica PV-4, comple... 36 4.3 BX950229_1068(BX950229|pid:none) Methanococcus maripaludis strai... 36 4.3 CP000112_2405(CP000112|pid:none) Desulfovibrio desulfuricans G20... 36 4.3 AY140894_3(AY140894|pid:none) Goose hemorrhagic polyomavirus iso... 36 5.6 CP001229_291(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 36 5.6 CP000867_113(CP000867|pid:none) Methanococcus maripaludis C6, co... 36 5.6 AY140894_2(AY140894|pid:none) Goose hemorrhagic polyomavirus iso... 36 5.6 CP000153_1364(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 35 7.4 CP000745_318(CP000745|pid:none) Methanococcus maripaludis C7, co... 35 7.4 CP000866_586(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 35 9.6 CP000155_6401(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 35 9.6 AP008230_3193(AP008230|pid:none) Desulfitobacterium hafniense Y5... 35 9.6 CP000143_1225(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 35 9.6 AJ248288_19(AJ248288|pid:none) Pyrococcus abyssi complete genome... 35 9.6 AE016796_475(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 35 9.6
>CP001399_2159(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, complete genome. Length = 312
Score = 53.1 bits (126), Expect = 3e-05 Identities = 27/75 (36%), Positives = 46/75 (61%) Frame = +3
Query: 1428 LYKGVFYLFLGGLLICYFSKPFIDSIVSLASSWEINPILLAFFLAPIASEMPEILESISL 1607 + KG+ Y+ +GGL + + SK + +I S+AS + ++P++LA + PIA+E+ E L +I L Sbjct: 165 IIKGLIYVIIGGLPLTFTSKYLVSTISSIASMFNVSPLILAILITPIAAELEENLTAIKL 224
Query: 1608 SRKGHSQSINIAFSN 1652 S S+ A N Sbjct: 225 ISDSPS-SVTTALMN 238
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 2,297,549,573 Number of extensions: 37432613 Number of successful extensions: 102057 Number of sequences better than 10.0: 196 Number of HSP's gapped: 101961 Number of HSP's successfully gapped: 339 Length of query: 632 Length of database: 1,051,180,864 Length adjustment: 135 Effective length of query: 497 Effective length of database: 614,245,399 Effective search space: 305279963303 Effective search space used: 305279963303 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
3 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
3 |
CH (FL, L) |
0 |
CF (FL, S) |
4 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |