Contig-U15070-1
Contig ID Contig-U15070-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15070-1 (Contig-U15070-1Q) /CSM_Contig/Contig-U15070-1Q.Seq.d
CTGCTCCTCAGTGGATGTTGCCTTTACTTCTAGGCCTGTACGGAAGTGTT
ACTTCTGCTCTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGG
GAAAAAACGAATGTTTATAGTATAAATATAAATATAATTTTGTAATATCT
AAATTTATTTGTAACATTATTATTATTTCTTTTATTGGAAAATTATTTTT
AAAAAAACAAAATAATTTTTTAATTTTTTTTTTTTTTTTCAAAAATTAAA
AAAAAAAAATAAAATAAAATTCTTGTTTTTATAAAATAAAAAGGTTGGAC
TTTCACACCCTTTTTTTTATTAAATTTAATATGACACCAGTTATCACAGC
ATTTTTATCGTTTGCATTTCTTTGTTTTGCATCTTGGTGTGTTGGTGAAG
GTGGTGAAATCCTTGGTAAGAAATATGATGCCTCAATTATTGGTGGTCTA
ATTATAGCTTGGTTAAATACAGCACCAGAAGCAATTTTCTTTATAACAGA
CTGCTCCTCAGTGGATGTTGCCTTTACTTCTAGGCCTGTACGGAAGTGTT
ACTTCTGCTCTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGG
GAAAAAACGAATGTTTATAGTATAAATATAAATATAATTTTGTAATATCT
AAATTTATTTGTAACATTATTATTATTTCTTTTATTGGAAAATTATTTTT
AAAAAAACAAAATAATTTTTTAATTTTTTTTTTTTTTTTCAAAAATTAAA
AAAAAAAAATAAAATAAAATTCTTGTTTTTATAAAATAAAAAGGTTGGAC
TTTCACACCCTTTTTTTTATTAAATTTAATATGACACCAGTTATCACAGC
ATTTTTATCGTTTGCATTTCTTTGTTTTGCATCTTGGTGTGTTGGTGAAG
GTGGTGAAATCCTTGGTAAGAAATATGATGCCTCAATTATTGGTGGTCTA
ATTATAGCTTGGTTAAATACAGCACCAGAAGCAATTTTCTTTATAACAGC
ATTAACAAGTGATAATACAAGATTTGCAGTTGGAGCAGTTAGTGGTAGTA
GTATTGTAGTTTGTACAGTAGCGTTGGGATGTTGTATAGTTTTAGGTACA
AGAAATAGAAAAGGTGGATCATTTCAATTACAACCACCAGTTAAAAAGCA
ATGTTTAATTTTACTATTATCATTATTGATACCATTATTCTTATCATTGG
TTGGATATAATGTTTTCTTTGGTATTTTCGGAATAATCTATTATTTAATA
TTCATTGGATATTCATTATTTCATAAATTACCAGAAGACGAGAAAAAAGA
AGATCGTGATATTGAAATGGGTGAAAGAAAGAATGGTGCAAATGAACAAA
CGACAGCATCAACAACAGCATCATCAACAGAATCCGACGACGAAGACACC
GATGAAGAAGATGAACATGACGAACCATTATATAAAGGTGTATTTTATTT
ATTTTTAGGTGGTCTTTTAATTTGTTACTTTAGTAAACCATTCATTGACT
CAATTGTATCATTAGCATCATCTTGGGAAATTAATCCAATCTTATTAGCA
TTCTTTTTAGCTCCAATTGCTTCAGAAATGCCTGAAATCTTAGAATCAAT
TTCATTATCAAGAAAAGGTCATTCTCAAAGTATTAATATAGCTTTTTCAA
ATTTAATTGGTGGTACAATAACCAAAACAACTTTATTAATGGGTATTTTC
TGTTTCTTTGGAGTTGTTAAAGGATTTGAATGGGAATCACCTACATATTC
ATTATGCTTGATATTATTGACAATTTGTGCAGCTGCAGCATCTGGTATTG
GTTATTTTGTGAACAAGATAAAACAACAACATGGTTTAATGTTATTCGCT
ATTTTCTTATTAGCTGGAATAATACAATATAAATATAATATAAACATT

Gap no gap
Contig length 1898
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4750926
End point 4749104
Strand (PLUS/MINUS) MINUS
Number of clones 10
Number of EST 15
Link to clone list U15070
List of clone(s)

est1=SFF365X,1,1000
est2=SFF365F,101,257
est3=SFI548F,117,289
est4=SFI661F,130,257
est5=VFF585F,130,289
est6=VFK405E,819,1893
est7=VFE592E,823,1898
est8=CFK315E,828,1898
est9=CFK314Z,1163,1865
est10=CFK310Z,1217,1898
est11=SFI661Z,1234,1897
est12=SFI548Z,1346,1897
est13=CFK409Z,1411,1700
est14=SFF365Z,1411,1872
est15=VFF585Z,1425,1554
Translated Amino Acid sequence
apqwmlplllglygsvtsalkaaeflehcwptgkkrmfiv*i*i*fcni*iyl*hyyyff
ywkiifkktk*ffnfffffqklkkknkikflfl*nkkvglshpffy*i*ydtsyhsifiv
cislfcilvcw*rw*npw*ei*clnywwsnyslvkystrsnflynrlllsgcclyf*act
evllll*klrnssstvgllgknecl*ykykynfviskficniiiisfigklflkkqnnfl
ifffffkn*kkkik*NSCFYKIKRLDFHTLFFIKFNMTPVITAFLSFAFLCFASWCVGEG
GEILGKKYDASIIGGLIIAWLNTAPEAIFFITALTSDNTRFAVGAVSGSSIVVCTVALGC
CIVLGTRNRKGGSFQLQPPVKKQCLILLLSLLIPLFLSLVGYNVFFGIFGIIYYLIFIGY
SLFHKLPEDEKKEDRDIEMGERKNGANEQTTASTTASSTESDDEDTDEEDEHDEPLYKGV
FYLFLGGLLICYFSKPFIDSIVSLASSWEINPILLAFFLAPIASEMPEILESISLSRKGH
SQSINIAFSNLIGGTITKTTLLMGIFCFFGVVKGFEWESPTYSLCLILLTICAAAASGIG
YFVNKIKQQHGLMLFAIFLLAGIIQYKYNINI


Translated Amino Acid sequence (All Frames)
Frame A:
lllsgcclyf*actevllll*klrnssstvgllgknecl*ykykynfviskficniiiis
figklflkkqnnflifffffkn*kkkik*nscfykikrldfhtlffikfnmtpvitafls
faflcfaswcvgeggeilgkkydasiiggliiawlntapeaiffitdcssvdvaftsrpv
rkcyfcskscgiprallaywektnvysininiil*ylnlfvtlllflllenyf*knkiif
*fffffskikkkk*nkilvfik*kgwtftpffllnli*hqlsqhfyrlhffvlhlgvlvk
vvkslvrnmmpqllvv*l*lg*iqhqkqfsl*qh*qviiqdlqleqlvvvvl*fvq*rwd
vv*f*vqeiekvdhfnynhqlksnv*fyyyhy*yhysyhwldimfslvfse*sii*ysld
ihyfinyqktrkkkivilkwvkermvqmnkrqhqqqhhqqnpttktpmkkmnmtnhyikv
yfiyf*vvf*fvtlvnhsltqlyh*hhlgkliqsy*hsf*lqllqkclks*nqfhyqekv
ilkvli*lfqi*lvvq*pkqly*wvfsvslellkdlngnhlhihya*yy*qfvqlqhlvl
vil*tr*nnnmv*cyslfsy*le*yninii*t


Frame B:
cssvdvaftsrpvrkcyfcskscgiprallaywektnvysininiil*ylnlfvtlllfl
llenyf*knkiif*fffffskikkkk*nkilvfik*kgwtftpffllnli*hqlsqhfyr
lhffvlhlgvlvkvvkslvrnmmpqllvv*l*lg*iqhqkqfsl*qtapqwmlplllgly
gsvtsalkaaeflehcwptgkkrmfiv*i*i*fcni*iyl*hyyyffywkiifkktk*ff
nfffffqklkkknkikflfl*nkkvglshpffy*i*ydtsyhsifivcislfcilvcw*r
w*npw*ei*clnywwsnyslvkystrsnflynsink**ykicswss*w**ycslyssvgm
lysfrykk*krwiisittts*kamfnftiiiidtiiliigwi*cflwyfrnnllfnihwi
fiis*itrrrekrrs*y*ng*kkewck*tndsinnsiinrirrrrhr*rr*t*rtii*rc
ilfifrwsfnlll**tih*lnciisiilgn*snlisilfssncfrna*nlrinfiikkrs
fsky*ysffkfnwwynnqnnfingyflflwsc*ri*mgityifimldiidnlcscsiwyw
lfceqdktttwfnviryfliswnnti*i*ykh


Frame C:
apqwmlplllglygsvtsalkaaeflehcwptgkkrmfiv*i*i*fcni*iyl*hyyyff
ywkiifkktk*ffnfffffqklkkknkikflfl*nkkvglshpffy*i*ydtsyhsifiv
cislfcilvcw*rw*npw*ei*clnywwsnyslvkystrsnflynrlllsgcclyf*act
evllll*klrnssstvgllgknecl*ykykynfviskficniiiisfigklflkkqnnfl
ifffffkn*kkkik*NSCFYKIKRLDFHTLFFIKFNMTPVITAFLSFAFLCFASWCVGEG
GEILGKKYDASIIGGLIIAWLNTAPEAIFFITALTSDNTRFAVGAVSGSSIVVCTVALGC
CIVLGTRNRKGGSFQLQPPVKKQCLILLLSLLIPLFLSLVGYNVFFGIFGIIYYLIFIGY
SLFHKLPEDEKKEDRDIEMGERKNGANEQTTASTTASSTESDDEDTDEEDEHDEPLYKGV
FYLFLGGLLICYFSKPFIDSIVSLASSWEINPILLAFFLAPIASEMPEILESISLSRKGH
SQSINIAFSNLIGGTITKTTLLMGIFCFFGVVKGFEWESPTYSLCLILLTICAAAASGIG
YFVNKIKQQHGLMLFAIFLLAGIIQYKYNINI


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15070-1 (Contig-U15070-1Q)
/CSM_Contig/Contig-U15070-1Q.Seq.d
(1898 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15070-1 (Contig-U15070-1Q) /CSM_Contig/Conti... 2190 0.0
Contig-U16509-1 (Contig-U16509-1Q) /CSM_Contig/Conti... 204 4e-52
Contig-U16518-1 (Contig-U16518-1Q) /CSM_Contig/Conti... 200 6e-51
Contig-U15249-1 (Contig-U15249-1Q) /CSM_Contig/Conti... 149 2e-35
Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti... 48 5e-05
Contig-U12953-1 (Contig-U12953-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U04537-1 (Contig-U04537-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U16507-1 (Contig-U16507-1Q) /CSM_Contig/Conti... 44 8e-04
Contig-U09569-1 (Contig-U09569-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Conti... 40 0.012

>Contig-U15070-1 (Contig-U15070-1Q) /CSM_Contig/Contig-U15070-1Q.Seq.d
Length = 1898

Score = 2191 bits (1105), Expect = 0.0
Identities = 1121/1129 (99%)
Strand = Plus / Plus


Query: 770 ttcttgtttttataaaataaaaaggttggactttcacacccnnnnnnnnattaaatttaa 829
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 770 ttcttgtttttataaaataaaaaggttggactttcacacccttttttttattaaatttaa 829


Query: 830 tatgacaccagttatcacagcatttttatcgtttgcatttctttgttttgcatcttggtg 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tatgacaccagttatcacagcatttttatcgtttgcatttctttgttttgcatcttggtg 889


Query: 890 tgttggtgaaggtggtgaaatccttggtaagaaatatgatgcctcaattattggtggtct 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tgttggtgaaggtggtgaaatccttggtaagaaatatgatgcctcaattattggtggtct 949


Query: 950 aattatagcttggttaaatacagcaccagaagcaattttctttataacagcattaacaag 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 aattatagcttggttaaatacagcaccagaagcaattttctttataacagcattaacaag 1009


Query: 1010 tgataatacaagatttgcagttggagcagttagtggtagtagtattgtagtttgtacagt 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 tgataatacaagatttgcagttggagcagttagtggtagtagtattgtagtttgtacagt 1069


Query: 1070 agcgttgggatgttgtatagttttaggtacaagaaatagaaaaggtggatcatttcaatt 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 agcgttgggatgttgtatagttttaggtacaagaaatagaaaaggtggatcatttcaatt 1129


Query: 1130 acaaccaccagttaaaaagcaatgtttaattttactattatcattattgataccattatt 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 acaaccaccagttaaaaagcaatgtttaattttactattatcattattgataccattatt 1189


Query: 1190 cttatcattggttggatataatgttttctttggtattttcggaataatctattatttaat 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 cttatcattggttggatataatgttttctttggtattttcggaataatctattatttaat 1249


Query: 1250 attcattggatattcattatttcataaattaccagaagacgagaaaaaagaagatcgtga 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 attcattggatattcattatttcataaattaccagaagacgagaaaaaagaagatcgtga 1309


Query: 1310 tattgaaatgggtgaaagaaagaatggtgcaaatgaacaaacgacagcatcaacaacagc 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 tattgaaatgggtgaaagaaagaatggtgcaaatgaacaaacgacagcatcaacaacagc 1369


Query: 1370 atcatcaacagaatccgacgacgaagacaccgatgaagaagatgaacatgacgaaccatt 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 atcatcaacagaatccgacgacgaagacaccgatgaagaagatgaacatgacgaaccatt 1429


Query: 1430 atataaaggtgtattttatttatttttaggtggtcttttaatttgttactttagtaaacc 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 atataaaggtgtattttatttatttttaggtggtcttttaatttgttactttagtaaacc 1489


Query: 1490 attcattgactcaattgtatcattagcatcatcttgggaaattaatccaatcttattagc 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 attcattgactcaattgtatcattagcatcatcttgggaaattaatccaatcttattagc 1549


Query: 1550 attctttttagctccaattgcttcagaaatgcctgaaatcttagaatcaatttcattatc 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1550 attctttttagctccaattgcttcagaaatgcctgaaatcttagaatcaatttcattatc 1609


Query: 1610 aagaaaaggtcattctcaaagtattaatatagctttttcaaatttaattggtggtacaat 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 aagaaaaggtcattctcaaagtattaatatagctttttcaaatttaattggtggtacaat 1669


Query: 1670 aaccaaaacaactttattaatgggtattttctgtttctttggagttgttaaaggatttga 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1670 aaccaaaacaactttattaatgggtattttctgtttctttggagttgttaaaggatttga 1729


Query: 1730 atgggaatcacctacatattcattatgcttgatattattgacaatttgtgcagctgcagc 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1730 atgggaatcacctacatattcattatgcttgatattattgacaatttgtgcagctgcagc 1789


Query: 1790 atctggtattggttattttgtgaacaagataaaacaacaacatggtttaatgttattcgc 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1790 atctggtattggttattttgtgaacaagataaaacaacaacatggtttaatgttattcgc 1849


Query: 1850 tattttcttattagctggaataatacaatataaatataatataaacatt 1898
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1850 tattttcttattagctggaataatacaatataaatataatataaacatt 1898


Score = 682 bits (344), Expect = 0.0
Identities = 360/368 (97%)
Strand = Plus / Plus


Query: 270 ttcttgtttttataaaataaaaaggttggactttcacacccnnnnnnnnattaaatttaa 329
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 270 ttcttgtttttataaaataaaaaggttggactttcacacccttttttttattaaatttaa 329


Query: 330 tatgacaccagttatcacagcatttttatcgtttgcatttctttgttttgcatcttggtg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatgacaccagttatcacagcatttttatcgtttgcatttctttgttttgcatcttggtg 389


Query: 390 tgttggtgaaggtggtgaaatccttggtaagaaatatgatgcctcaattattggtggtct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgttggtgaaggtggtgaaatccttggtaagaaatatgatgcctcaattattggtggtct 449


Query: 450 aattatagcttggttaaatacagcaccagaagcaattttctttataacagactgctcctc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aattatagcttggttaaatacagcaccagaagcaattttctttataacagactgctcctc 509


Query: 510 agtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctctaaaagctg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctctaaaagctg 569


Query: 570 cggaattcctcgagcactgttggcctactgggaaaaaacgaatgtttatagtataaatat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cggaattcctcgagcactgttggcctactgggaaaaaacgaatgtttatagtataaatat 629


Query: 630 aaatataa 637
||||||||
Sbjct: 630 aaatataa 637


Score = 408 bits (206), Expect = e-113
Identities = 222/230 (96%)
Strand = Plus / Plus


Query: 770 ttcttgtttttataaaataaaaaggttggactttcacacccnnnnnnnnattaaatttaa 829
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 270 ttcttgtttttataaaataaaaaggttggactttcacacccttttttttattaaatttaa 329


Query: 830 tatgacaccagttatcacagcatttttatcgtttgcatttctttgttttgcatcttggtg 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatgacaccagttatcacagcatttttatcgtttgcatttctttgttttgcatcttggtg 389


Query: 890 tgttggtgaaggtggtgaaatccttggtaagaaatatgatgcctcaattattggtggtct 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgttggtgaaggtggtgaaatccttggtaagaaatatgatgcctcaattattggtggtct 449


Query: 950 aattatagcttggttaaatacagcaccagaagcaattttctttataacag 999
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aattatagcttggttaaatacagcaccagaagcaattttctttataacag 499


Score = 408 bits (206), Expect = e-113
Identities = 222/230 (96%)
Strand = Plus / Plus


Query: 270 ttcttgtttttataaaataaaaaggttggactttcacacccnnnnnnnnattaaatttaa 329
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 770 ttcttgtttttataaaataaaaaggttggactttcacacccttttttttattaaatttaa 829


Query: 330 tatgacaccagttatcacagcatttttatcgtttgcatttctttgttttgcatcttggtg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tatgacaccagttatcacagcatttttatcgtttgcatttctttgttttgcatcttggtg 889


Query: 390 tgttggtgaaggtggtgaaatccttggtaagaaatatgatgcctcaattattggtggtct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tgttggtgaaggtggtgaaatccttggtaagaaatatgatgcctcaattattggtggtct 949


Query: 450 aattatagcttggttaaatacagcaccagaagcaattttctttataacag 499
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 aattatagcttggttaaatacagcaccagaagcaattttctttataacag 999


Score = 325 bits (164), Expect = 1e-88
Identities = 164/164 (100%)
Strand = Plus / Plus


Query: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 560


Query: 61 taaaagctgcggaattcctcgagcactgttggcctactgggaaaaaacgaatgtttatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaagctgcggaattcctcgagcactgttggcctactgggaaaaaacgaatgtttatag 620


Query: 121 tataaatataaatataattttgtaatatctaaatttatttgtaa 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaatataaatataattttgtaatatctaaatttatttgtaa 664


Score = 325 bits (164), Expect = 1e-88
Identities = 164/164 (100%)
Strand = Plus / Plus


Query: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60


Query: 61 taaaagctgcggaattcctcgagcactgttggcctactgggaaaaaacgaatgtttatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaaagctgcggaattcctcgagcactgttggcctactgggaaaaaacgaatgtttatag 120


Query: 121 tataaatataaatataattttgtaatatctaaatttatttgtaa 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tataaatataaatataattttgtaatatctaaatttatttgtaa 164


Score = 272 bits (137), Expect = 2e-72
Identities = 137/137 (100%)
Strand = Plus / Plus


Query: 501 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60


Query: 561 taaaagctgcggaattcctcgagcactgttggcctactgggaaaaaacgaatgtttatag 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaaagctgcggaattcctcgagcactgttggcctactgggaaaaaacgaatgtttatag 120


Query: 621 tataaatataaatataa 637
|||||||||||||||||
Sbjct: 121 tataaatataaatataa 137


>Contig-U16509-1 (Contig-U16509-1Q) /CSM_Contig/Contig-U16509-1Q.Seq.d
Length = 2872

Score = 204 bits (103), Expect = 4e-52
Identities = 106/107 (99%)
Strand = Plus / Plus


Query: 500 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 627


Query: 560 ctaaaagctgcggaattcctcgagcactgttggcctactgggaaaaa 606
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 628 ctaaaagctgcggaattcctcgagcactgttggcctactggaaaaaa 674


Score = 202 bits (102), Expect = 1e-51
Identities = 105/106 (99%)
Strand = Plus / Plus


Query: 500 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 127


Query: 560 ctaaaagctgcggaattcctcgagcactgttggcctactgggaaaa 605
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 128 ctaaaagctgcggaattcctcgagcactgttggcctactggaaaaa 173


Score = 202 bits (102), Expect = 1e-51
Identities = 105/106 (99%)
Strand = Plus / Plus


Query: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 628


Query: 61 taaaagctgcggaattcctcgagcactgttggcctactgggaaaaa 106
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 629 taaaagctgcggaattcctcgagcactgttggcctactggaaaaaa 674


Score = 200 bits (101), Expect = 6e-51
Identities = 104/105 (99%)
Strand = Plus / Plus


Query: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 128


Query: 61 taaaagctgcggaattcctcgagcactgttggcctactgggaaaa 105
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 129 taaaagctgcggaattcctcgagcactgttggcctactggaaaaa 173


>Contig-U16518-1 (Contig-U16518-1Q) /CSM_Contig/Contig-U16518-1Q.Seq.d
Length = 3854

Score = 200 bits (101), Expect = 6e-51
Identities = 101/101 (100%)
Strand = Plus / Plus


Query: 500 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 203


Query: 560 ctaaaagctgcggaattcctcgagcactgttggcctactgg 600
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctaaaagctgcggaattcctcgagcactgttggcctactgg 244


Score = 200 bits (101), Expect = 6e-51
Identities = 101/101 (100%)
Strand = Plus / Plus


Query: 500 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 1206


Query: 560 ctaaaagctgcggaattcctcgagcactgttggcctactgg 600
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 ctaaaagctgcggaattcctcgagcactgttggcctactgg 1247


Score = 200 bits (101), Expect = 6e-51
Identities = 101/101 (100%)
Strand = Plus / Plus


Query: 500 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 1706


Query: 560 ctaaaagctgcggaattcctcgagcactgttggcctactgg 600
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 ctaaaagctgcggaattcctcgagcactgttggcctactgg 1747


Score = 200 bits (101), Expect = 6e-51
Identities = 101/101 (100%)
Strand = Plus / Plus


Query: 500 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 actgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgct 703


Query: 560 ctaaaagctgcggaattcctcgagcactgttggcctactgg 600
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ctaaaagctgcggaattcctcgagcactgttggcctactgg 744


Score = 198 bits (100), Expect = 2e-50
Identities = 100/100 (100%)
Strand = Plus / Plus


Query: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1648 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 1707


Query: 61 taaaagctgcggaattcctcgagcactgttggcctactgg 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1708 taaaagctgcggaattcctcgagcactgttggcctactgg 1747


Score = 198 bits (100), Expect = 2e-50
Identities = 100/100 (100%)
Strand = Plus / Plus


Query: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 1207


Query: 61 taaaagctgcggaattcctcgagcactgttggcctactgg 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 taaaagctgcggaattcctcgagcactgttggcctactgg 1247


Score = 198 bits (100), Expect = 2e-50
Identities = 100/100 (100%)
Strand = Plus / Plus


Query: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 704


Query: 61 taaaagctgcggaattcctcgagcactgttggcctactgg 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 taaaagctgcggaattcctcgagcactgttggcctactgg 744


Score = 198 bits (100), Expect = 2e-50
Identities = 100/100 (100%)
Strand = Plus / Plus


Query: 1 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ctgctcctcagtggatgttgcctttacttctaggcctgtacggaagtgttacttctgctc 204


Query: 61 taaaagctgcggaattcctcgagcactgttggcctactgg 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 taaaagctgcggaattcctcgagcactgttggcctactgg 244


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,823
Number of Sequences: 8402
Number of extensions: 50823
Number of successful extensions: 7945
Number of sequences better than 10.0: 809
length of query: 1898
length of database: 8,075,542
effective HSP length: 17
effective length of query: 1881
effective length of database: 7,932,708
effective search space: 14921423748
effective search space used: 14921423748
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 1.11
Homology vs DNA
Query= Contig-U15070-1 (Contig-U15070-1Q) /CSM_Contig/Contig-U15070-1Q.Seq.d
(1898 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ376097) Dictyostelium discoideum cDNA clone:ddc21n03, 3' ... 1423 0.0 1
(BJ428123) Dictyostelium discoideum cDNA clone:ddv10g23, 3' ... 1394 0.0 1
(BJ376088) Dictyostelium discoideum cDNA clone:ddc21l03, 3' ... 1378 0.0 1
(BJ409994) Dictyostelium discoideum cDNA clone:ddv10g23, 5' ... 1320 0.0 1
(BJ415000) Dictyostelium discoideum cDNA clone:ddv21j02, 5' ... 1302 0.0 1
(BJ402895) Dictyostelium discoideum cDNA clone:dds18i16, 3' ... 1257 0.0 1
(BJ376052) Dictyostelium discoideum cDNA clone:ddc21d03, 3' ... 1084 0.0 2
(BJ402846) Dictyostelium discoideum cDNA clone:dds18o11, 3' ... 948 0.0 1
(BJ362292) Dictyostelium discoideum cDNA clone:ddc21n03, 5' ... 884 0.0 1
(BJ433216) Dictyostelium discoideum cDNA clone:ddv21j02, 3' ... 852 0.0 1
(BJ398216) Dictyostelium discoideum cDNA clone:dds11b17, 3' ... 793 0.0 1
(BJ376045) Dictyostelium discoideum cDNA clone:ddc21b04, 3' ... 325 e-119 4
(BJ428686) Dictyostelium discoideum cDNA clone:ddv12i21, 3' ... 228 6e-55 1
(CI017218) Oryza sativa Japonica Group cDNA, clone: 007-M028... 214 9e-51 1
(CI017336) Oryza sativa Japonica Group cDNA, clone: 007-M029... 212 2e-50 2
(CI040770) Oryza sativa Japonica Group cDNA, clone: 009-M198... 212 4e-50 1
(CI033851) Oryza sativa Japonica Group cDNA, clone: 009-M115... 210 1e-49 1
(CI029854) Oryza sativa Japonica Group cDNA, clone: 009-M069... 210 1e-49 1
(CI021267) Oryza sativa Japonica Group cDNA, clone: 007-M074... 210 1e-49 1
(CI018344) Oryza sativa Japonica Group cDNA, clone: 007-M041... 210 1e-49 1
(CI016729) Oryza sativa Japonica Group cDNA, clone: 007-M022... 210 1e-49 1
(CI035813) Oryza sativa Japonica Group cDNA, clone: 009-M140... 200 2e-49 2
(CI038044) Oryza sativa Japonica Group cDNA, clone: 009-M166... 208 6e-49 1
(CI035256) Oryza sativa Japonica Group cDNA, clone: 009-M133... 208 6e-49 1
(CI029929) Oryza sativa Japonica Group cDNA, clone: 009-M069... 208 6e-49 1
(CI023408) Oryza sativa Japonica Group cDNA, clone: 007-M098... 208 6e-49 1
(CI023096) Oryza sativa Japonica Group cDNA, clone: 007-M095... 208 6e-49 1
(CI021570) Oryza sativa Japonica Group cDNA, clone: 007-M077... 208 6e-49 1
(CI020697) Oryza sativa Japonica Group cDNA, clone: 007-M067... 208 6e-49 1
(CI001353) Oryza sativa Japonica Group cDNA, clone: 003-M022... 208 6e-49 1
(CI020179) Oryza sativa Japonica Group cDNA, clone: 007-M061... 206 9e-49 2
(CI022495) Oryza sativa Japonica Group cDNA, clone: 007-M088... 206 1e-48 2
(CI064787) Oryza sativa Japonica Group cDNA, clone: 014-M100... 206 2e-48 1
(CI064524) Oryza sativa Japonica Group cDNA, clone: 014-M096... 206 2e-48 1
(CI064008) Oryza sativa Japonica Group cDNA, clone: 014-M088... 206 2e-48 1
(CI063890) Oryza sativa Japonica Group cDNA, clone: 014-M087... 206 2e-48 1
(CI062737) Oryza sativa Japonica Group cDNA, clone: 014-M070... 206 2e-48 1
(CI060288) Oryza sativa Japonica Group cDNA, clone: 014-M031... 206 2e-48 1
(CI060272) Oryza sativa Japonica Group cDNA, clone: 014-M031... 206 2e-48 1
(CI060062) Oryza sativa Japonica Group cDNA, clone: 014-M028... 206 2e-48 1
(CI058750) Oryza sativa Japonica Group cDNA, clone: 014-M008... 206 2e-48 1
(CI057987) Oryza sativa Japonica Group cDNA, clone: 013-M097... 206 2e-48 1
(CI057751) Oryza sativa Japonica Group cDNA, clone: 013-M093... 206 2e-48 1
(CI057602) Oryza sativa Japonica Group cDNA, clone: 013-M090... 206 2e-48 1
(CI057539) Oryza sativa Japonica Group cDNA, clone: 013-M089... 206 2e-48 1
(CI057456) Oryza sativa Japonica Group cDNA, clone: 013-M087... 206 2e-48 1
(CI057364) Oryza sativa Japonica Group cDNA, clone: 013-M085... 206 2e-48 1
(CI057321) Oryza sativa Japonica Group cDNA, clone: 013-M085... 206 2e-48 1
(CI057159) Oryza sativa Japonica Group cDNA, clone: 013-M082... 206 2e-48 1
(CI057078) Oryza sativa Japonica Group cDNA, clone: 013-M080... 206 2e-48 1
(CI057075) Oryza sativa Japonica Group cDNA, clone: 013-M080... 206 2e-48 1
(CI056792) Oryza sativa Japonica Group cDNA, clone: 013-M075... 206 2e-48 1
(CI056766) Oryza sativa Japonica Group cDNA, clone: 013-M075... 206 2e-48 1
(CI056764) Oryza sativa Japonica Group cDNA, clone: 013-M075... 206 2e-48 1
(CI056533) Oryza sativa Japonica Group cDNA, clone: 013-M071... 206 2e-48 1
(CI056345) Oryza sativa Japonica Group cDNA, clone: 013-M068... 206 2e-48 1
(CI056204) Oryza sativa Japonica Group cDNA, clone: 013-M066... 206 2e-48 1
(CI056047) Oryza sativa Japonica Group cDNA, clone: 013-M063... 206 2e-48 1
(CI055958) Oryza sativa Japonica Group cDNA, clone: 013-M062... 206 2e-48 1
(CI055881) Oryza sativa Japonica Group cDNA, clone: 013-M061... 206 2e-48 1
(CI055798) Oryza sativa Japonica Group cDNA, clone: 013-M059... 206 2e-48 1
(CI055793) Oryza sativa Japonica Group cDNA, clone: 013-M059... 206 2e-48 1
(CI055757) Oryza sativa Japonica Group cDNA, clone: 013-M059... 206 2e-48 1
(CI055720) Oryza sativa Japonica Group cDNA, clone: 013-M058... 206 2e-48 1
(CI055516) Oryza sativa Japonica Group cDNA, clone: 013-M054... 206 2e-48 1
(CI055427) Oryza sativa Japonica Group cDNA, clone: 013-M053... 206 2e-48 1
(CI055314) Oryza sativa Japonica Group cDNA, clone: 013-M051... 206 2e-48 1
(CI054999) Oryza sativa Japonica Group cDNA, clone: 013-M045... 206 2e-48 1
(CI054971) Oryza sativa Japonica Group cDNA, clone: 013-M044... 206 2e-48 1
(CI054964) Oryza sativa Japonica Group cDNA, clone: 013-M044... 206 2e-48 1
(CI054904) Oryza sativa Japonica Group cDNA, clone: 013-M043... 206 2e-48 1
(CI054870) Oryza sativa Japonica Group cDNA, clone: 013-M042... 206 2e-48 1
(CI054603) Oryza sativa Japonica Group cDNA, clone: 013-M038... 206 2e-48 1
(CI054568) Oryza sativa Japonica Group cDNA, clone: 013-M037... 206 2e-48 1
(CI054421) Oryza sativa Japonica Group cDNA, clone: 013-M035... 206 2e-48 1
(CI054355) Oryza sativa Japonica Group cDNA, clone: 013-M034... 206 2e-48 1
(CI054324) Oryza sativa Japonica Group cDNA, clone: 013-M033... 206 2e-48 1
(CI053956) Oryza sativa Japonica Group cDNA, clone: 013-M026... 206 2e-48 1
(CI053873) Oryza sativa Japonica Group cDNA, clone: 013-M024... 206 2e-48 1
(CI053428) Oryza sativa Japonica Group cDNA, clone: 013-M016... 206 2e-48 1
(CI053411) Oryza sativa Japonica Group cDNA, clone: 013-M016... 206 2e-48 1
(CI053217) Oryza sativa Japonica Group cDNA, clone: 013-M012... 206 2e-48 1
(CI052604) Oryza sativa Japonica Group cDNA, clone: 013-M002... 206 2e-48 1
(CI052555) Oryza sativa Japonica Group cDNA, clone: 013-M001... 206 2e-48 1
(CI044594) Oryza sativa Japonica Group cDNA, clone: 011-M063... 206 2e-48 1
(CI037365) Oryza sativa Japonica Group cDNA, clone: 009-M158... 206 2e-48 1
(CI036406) Oryza sativa Japonica Group cDNA, clone: 009-M147... 206 2e-48 1
(CI036159) Oryza sativa Japonica Group cDNA, clone: 009-M144... 206 2e-48 1
(CI035749) Oryza sativa Japonica Group cDNA, clone: 009-M139... 206 2e-48 1
(CI032862) Oryza sativa Japonica Group cDNA, clone: 009-M103... 206 2e-48 1
(CI030845) Oryza sativa Japonica Group cDNA, clone: 009-M080... 206 2e-48 1
(CI029896) Oryza sativa Japonica Group cDNA, clone: 009-M069... 206 2e-48 1
(CI029421) Oryza sativa Japonica Group cDNA, clone: 009-M064... 206 2e-48 1
(CI027621) Oryza sativa Japonica Group cDNA, clone: 009-M042... 206 2e-48 1
(CI026969) Oryza sativa Japonica Group cDNA, clone: 009-M035... 206 2e-48 1
(CI026424) Oryza sativa Japonica Group cDNA, clone: 009-M029... 206 2e-48 1
(CI026205) Oryza sativa Japonica Group cDNA, clone: 009-M026... 206 2e-48 1
(CI024857) Oryza sativa Japonica Group cDNA, clone: 009-M011... 206 2e-48 1
(CI024248) Oryza sativa Japonica Group cDNA, clone: 009-M004... 206 2e-48 1
(CI023832) Oryza sativa Japonica Group cDNA, clone: 008-M004... 206 2e-48 1

>(BJ376097) Dictyostelium discoideum cDNA clone:ddc21n03, 3' end,
single read.
Length = 751

Score = 1423 bits (718), Expect = 0.0
Identities = 720/721 (99%)
Strand = Plus / Minus


Query: 1147 agcaatgtttaattttactattatcattattgataccattattcttatcattggttggat 1206
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 751 agcaatgtttaattttactatnatcattattgataccattattcttatcattggttggat 692


Query: 1207 ataatgttttctttggtattttcggaataatctattatttaatattcattggatattcat 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ataatgttttctttggtattttcggaataatctattatttaatattcattggatattcat 632


Query: 1267 tatttcataaattaccagaagacgagaaaaaagaagatcgtgatattgaaatgggtgaaa 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tatttcataaattaccagaagacgagaaaaaagaagatcgtgatattgaaatgggtgaaa 572


Query: 1327 gaaagaatggtgcaaatgaacaaacgacagcatcaacaacagcatcatcaacagaatccg 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaaagaatggtgcaaatgaacaaacgacagcatcaacaacagcatcatcaacagaatccg 512


Query: 1387 acgacgaagacaccgatgaagaagatgaacatgacgaaccattatataaaggtgtatttt 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acgacgaagacaccgatgaagaagatgaacatgacgaaccattatataaaggtgtatttt 452


Query: 1447 atttatttttaggtggtcttttaatttgttactttagtaaaccattcattgactcaattg 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atttatttttaggtggtcttttaatttgttactttagtaaaccattcattgactcaattg 392


Query: 1507 tatcattagcatcatcttgggaaattaatccaatcttattagcattctttttagctccaa 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tatcattagcatcatcttgggaaattaatccaatcttattagcattctttttagctccaa 332


Query: 1567 ttgcttcagaaatgcctgaaatcttagaatcaatttcattatcaagaaaaggtcattctc 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttgcttcagaaatgcctgaaatcttagaatcaatttcattatcaagaaaaggtcattctc 272


Query: 1627 aaagtattaatatagctttttcaaatttaattggtggtacaataaccaaaacaactttat 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaagtattaatatagctttttcaaatttaattggtggtacaataaccaaaacaactttat 212


Query: 1687 taatgggtattttctgtttctttggagttgttaaaggatttgaatgggaatcacctacat 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 taatgggtattttctgtttctttggagttgttaaaggatttgaatgggaatcacctacat 152


Query: 1747 attcattatgcttgatattattgacaatttgtgcagctgcagcatctggtattggttatt 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 attcattatgcttgatattattgacaatttgtgcagctgcagcatctggtattggttatt 92


Query: 1807 ttgtgaacaagataaaacaacaacatggtttaatgttattcgctattttcttattagctg 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ttgtgaacaagataaaacaacaacatggtttaatgttattcgctattttcttattagctg 32


Query: 1867 g 1867
|
Sbjct: 31 g 31

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,889,402,354
Number of extensions: 124420759
Number of successful extensions: 11406154
Number of sequences better than 10.0: 40116
Length of query: 1898
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1874
Effective length of database: 97,308,875,965
Effective search space: 182356833558410
Effective search space used: 182356833558410
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.14
Homology vs Protein
Query= Contig-U15070-1 (Contig-U15070-1Q) /CSM_Contig/Contig-U15070-1Q.Seq.d
(1898 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP001399_2159(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 53 3e-05
CP001400_2012(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 53 3e-05
AE006641_2942(AE006641|pid:none) Sulfolobus solfataricus P2, com... 52 8e-05
AF156105_3(AF156105|pid:none) Simian virus 40 strain VA45-54-2, ... 51 1e-04
AF038616_3(AF038616|pid:none) Simian virus 40 strain K661, compl... 51 1e-04
AF168994_2(AF168994|pid:none) Simian virus 40 strain T302, compl... 51 1e-04
AY271816_2(AY271816|pid:none) Simian virus 40 strain PML-1EK, co... 51 1e-04
AF156105_2(AF156105|pid:none) Simian virus 40 strain VA45-54-2, ... 51 1e-04
DQ660375_3(DQ660375|pid:none) Simian virus 40 isolate sv-imb, co... 51 1e-04
AF168994_3(AF168994|pid:none) Simian virus 40 strain T302, compl... 51 1e-04
DQ218418_2(DQ218418|pid:none) Simian virus 40 strain YNQD38, com... 50 2e-04
DQ218418_3(DQ218418|pid:none) Simian virus 40 strain YNQD38, com... 50 2e-04
V01109_6(V01109|pid:none) Human BK virus (strain MM) genome. (Cl... 47 0.002
AB211376_2(AB211376|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB260033_2(AB260033|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB211370_2(AB211370|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB263916_2(AB263916|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB263925_2(AB263925|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AY628233_3(AY628233|pid:none) BK polyomavirus isolate BKV CAP-m9... 47 0.003
AB263920_3(AB263920|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
(P03094) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 47 0.003
AB211390_2(AB211390|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
X56914_2(X56914|pid:none) Human polyomavirus BK (BKV) late regio... 47 0.003
AB263929_2(AB263929|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AY628234_3(AY628234|pid:none) BK polyomavirus isolate BKV HC-u2,... 47 0.003
AB301101_2(AB301101|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB269850_3(AB269850|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB301087_2(AB301087|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB211369_2(AB211369|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AY628235_3(AY628235|pid:none) BK polyomavirus isolate BKV HC-u5,... 47 0.003
AB269850_2(AB269850|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AY628233_2(AY628233|pid:none) BK polyomavirus isolate BKV CAP-m9... 47 0.003
AB211387_3(AB211387|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB211370_3(AB211370|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AY628235_2(AY628235|pid:none) BK polyomavirus isolate BKV HC-u5,... 47 0.003
AB263916_3(AB263916|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB269854_2(AB269854|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
DQ989795_3(DQ989795|pid:none) BK polyomavirus isolate PittVR1, c... 47 0.003
AB263929_3(AB263929|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB301101_3(AB301101|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
V01108_2(V01108|pid:none) Human BK virus (strain Dunlop) genome.... 47 0.003
AB211372_2(AB211372|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB211379_2(AB211379|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB263920_2(AB263920|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AY628225_2(AY628225|pid:none) BK polyomavirus isolate BKV HI-u5,... 47 0.003
AB211377_2(AB211377|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB263932_3(AB263932|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
DQ989794_2(DQ989794|pid:none) BK polyomavirus isolate PittVM1, c... 47 0.003
AB263931_3(AB263931|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
AB301087_3(AB301087|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
DQ989795_2(DQ989795|pid:none) BK polyomavirus isolate PittVR1, c... 47 0.003
AB263912_3(AB263912|pid:none) BK polyomavirus DNA, complete geno... 47 0.003
CP001399_1018(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 46 0.004
CP001400_931(CP001400|pid:none) Sulfolobus islandicus M.14.25, c... 46 0.004
CP001401_987(CP001401|pid:none) Sulfolobus islandicus M.16.27, c... 46 0.004
AY614708_3(AY614708|pid:none) Simian agent 12, complete genome. ... 45 0.009
AB127345_2(AB127345|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AB048555_3(AB048555|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AF281623_2(AF281623|pid:none) JC polyomavirus strain 801B agnopr... 45 0.009
AB048567_3(AB048567|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB048548_2(AB048548|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AF281610_3(AF281610|pid:none) JC virus strain 404 agnoprotein, V... 45 0.009
AB038249_3(AB038249|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AF396427_3(AF396427|pid:none) JC polyomavirus strain 732A agnopr... 45 0.009
AF295732_3(AF295732|pid:none) JC virus strain 310A, complete gen... 45 0.009
AF300966_3(AF300966|pid:none) JC polyomavirus strain 716A, compl... 45 0.009
AB048568_2(AB048568|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB038250_2(AB038250|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AB127351_3(AB127351|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AB362362_2(AB362362|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AF281625_2(AF281625|pid:none) JC polyomavirus strain 803A agnopr... 45 0.009
AF281609_3(AF281609|pid:none) JC virus strain 403 agnoprotein, V... 45 0.009
(Q3L6L8) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 45 0.009
AB048568_3(AB048568|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AF281614_3(AF281614|pid:none) JC virus strain 603 agnoprotein, V... 45 0.009
AY386378_3(AY386378|pid:none) JC virus isolate 335C, complete ge... 45 0.009
AB048575_3(AB048575|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB092584_3(AB092584|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB048546_3(AB048546|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB038249_2(AB038249|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AB048555_2(AB048555|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AY536243_2(AY536243|pid:none) JC virus isolate SA27_03 genotype ... 45 0.009
AB081618_3(AB081618|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB081008_2(AB081008|pid:none) JC virus DNA, complete genome, iso... 45 0.009
CP001402_1018(CP001402|pid:none) Sulfolobus islandicus M.16.4, c... 45 0.009
AB048554_3(AB048554|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB077879_3(AB077879|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB074575_3(AB074575|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB127012_2(AB127012|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
DQ875211_2(DQ875211|pid:none) JC polyomavirus isolate HWM, compl... 45 0.009
AB113119_2(AB113119|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AB185020_3(AB185020|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AF396434_3(AF396434|pid:none) JC virus #810B; WF4 agnoprotein, V... 45 0.009
AF295732_2(AF295732|pid:none) JC virus strain 310A, complete gen... 45 0.009
AB103402_3(AB103402|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB038252_2(AB038252|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AB081021_2(AB081021|pid:none) JC virus DNA, complete genome, iso... 45 0.009
U61771_3(U61771|pid:none) Human JC virus complete genome. 45 0.009
AB048563_2(AB048563|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AF396430_3(AF396430|pid:none) JC virus #811A; PNG8 agnoprotein, ... 45 0.009
AF396427_2(AF396427|pid:none) JC polyomavirus strain 732A agnopr... 45 0.009
AB081614_2(AB081614|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AF295739_3(AF295739|pid:none) JC virus strain 703C agnoprotein, ... 45 0.009
AB092584_2(AB092584|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AF396433_2(AF396433|pid:none) JC virus #809B; V16 agnoprotein, V... 45 0.009
AB127344_3(AB127344|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AY121910_2(AY121910|pid:none) JC virus strain 255A, complete gen... 45 0.009
AF281614_2(AF281614|pid:none) JC virus strain 603 agnoprotein, V... 45 0.009
AF396425_2(AF396425|pid:none) JC virus #253E; NC23 agnoprotein, ... 45 0.009
AF396431_2(AF396431|pid:none) JC virus #806B; F53 agnoprotein, V... 45 0.009
AB190451_2(AB190451|pid:none) JC polyomavirus genes for agnoprot... 45 0.009
U73500_3(U73500|pid:none) JC virus type 3, #308, complete genome. 45 0.009
AB190452_2(AB190452|pid:none) JC polyomavirus genes for agnoprot... 45 0.009
AF396434_2(AF396434|pid:none) JC virus #810B; WF4 agnoprotein, V... 45 0.009
AB074581_3(AB074581|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AF300966_2(AF300966|pid:none) JC polyomavirus strain 716A, compl... 45 0.009
U61771_2(U61771|pid:none) Human JC virus complete genome. 45 0.009
AB048563_3(AB048563|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AF281624_2(AF281624|pid:none) JC polyomavirus strain 802B agnopr... 45 0.009
AY386374_2(AY386374|pid:none) JC virus isolate 339A, complete ge... 45 0.009
AY386374_3(AY386374|pid:none) JC virus isolate 339A, complete ge... 45 0.009
AB048553_3(AB048553|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB092585_3(AB092585|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AY536243_3(AY536243|pid:none) JC virus isolate SA27_03 genotype ... 45 0.009
AB127343_3(AB127343|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AF281623_3(AF281623|pid:none) JC polyomavirus strain 801B agnopr... 45 0.009
U73500_2(U73500|pid:none) JC virus type 3, #308, complete genome. 45 0.009
AB077879_2(AB077879|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AF300945_2(AF300945|pid:none) JC polyomavirus strain 720B, compl... 45 0.009
EU835189_1(EU835189|pid:none) JC polyomavirus strain SANICD1_04 ... 45 0.009
AF281609_2(AF281609|pid:none) JC virus strain 403 agnoprotein, V... 45 0.009
AB048551_2(AB048551|pid:none) JC virus DNA, complete genome, iso... 45 0.009
AB038251_3(AB038251|pid:none) JC polyomavirus DNA, complete geno... 45 0.009
AF281601_2(AF281601|pid:none) JC virus strain 127B agnoprotein, ... 45 0.009
AF281611_3(AF281611|pid:none) JC virus strain 405 agnoprotein, V... 45 0.012
AB127347_3(AB127347|pid:none) JC polyomavirus DNA, complete geno... 44 0.016
AB127347_2(AB127347|pid:none) JC polyomavirus DNA, complete geno... 44 0.016
CP000300_394(CP000300|pid:none) Methanococcoides burtonii DSM 62... 42 0.060
AE017285_2604(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 42 0.10
CP000742_384(CP000742|pid:none) Methanococcus vannielii SB, comp... 41 0.18
AE006641_1059(AE006641|pid:none) Sulfolobus solfataricus P2, com... 41 0.18
AF224509_3(AF224509|pid:none) Bacteroides cellulosolvens cellulo... 39 0.51
CP001052_3783(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 39 0.51
CP000270_4304(CP000270|pid:none) Burkholderia xenovorans LB400 c... 39 0.51
CP000155_3516(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 39 0.51
CP000644_426(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 39 0.87
CP001107_2317(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 39 0.87
CU458896_4689(CU458896|pid:none) Mycobacterium abscessus chromos... 39 0.87
AP009044_2484(AP009044|pid:none) Corynebacterium glutamicum R DN... 38 1.1
CP001322_1851(CP001322|pid:none) Desulfatibacillum alkenivorans ... 38 1.1
CP000612_2479(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 38 1.1
CP000931_385(CP000931|pid:none) Shewanella halifaxensis HAW-EB4,... 38 1.1
AY212801_19(AY212801|pid:none) Uncultured bacterium clone VIIC10... 38 1.5
CP000851_3864(CP000851|pid:none) Shewanella pealeana ATCC 700345... 38 1.5
CP000569_1332(CP000569|pid:none) Actinobacillus pleuropneumoniae... 37 1.9
CP000472_301(CP000472|pid:none) Shewanella piezotolerans WP3, co... 37 1.9
CP000300_761(CP000300|pid:none) Methanococcoides burtonii DSM 62... 37 1.9
CP000687_1324(CP000687|pid:none) Actinobacillus pleuropneumoniae... 37 1.9
CP001091_1408(CP001091|pid:none) Actinobacillus pleuropneumoniae... 37 1.9
AE010299_2940(AE010299|pid:none) Methanosarcina acetivorans str.... 37 1.9
CP000959_922(CP000959|pid:none) Burkholderia cenocepacia MC0-3 c... 37 1.9
CP001132_727(CP001132|pid:none) Acidithiobacillus ferrooxidans A... 37 1.9
AE010299_2742(AE010299|pid:none) Methanosarcina acetivorans str.... 37 1.9
AJ006017_1(AJ006017|pid:none) Hamster polyomavirus VP3 gene for ... 37 2.5
EF186666_5(EF186666|pid:none) Murine pneumotropic virus strain K... 37 2.5
EF186666_4(EF186666|pid:none) Murine pneumotropic virus strain K... 37 2.5
CP000462_3690(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 37 2.5
M55904_5(M55904|pid:none) Murine pneumotropic virus, complete ge... 37 2.5
VVVPK2(D37945)coat protein VP2 - mouse polyomavirus (strain Kilh... 37 2.5
AJ006016_1(AJ006016|pid:none) Hamster polyomavirus VP2 gene for ... 37 2.5
(P24849) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 37 3.3
D13942_3(D13942|pid:none) Bovine polyomavirus DNA, complete geno... 37 3.3
CP000096_541(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 37 3.3
(P03096) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 37 3.3
J02288_6(J02288|pid:none) Murine polyomavirus strain A2, complet... 37 3.3
(P12908) RecName: Full=Minor capsid protein VP2; AltName: Full=M... 37 3.3
AM427716_3(AM427716|pid:none) Vitis vinifera contig VV78X140130.... 37 3.3
CP000323_181(CP000323|pid:none) Psychrobacter cryohalolentis K5,... 37 3.3
CP001087_3861(CP001087|pid:none) Desulfobacterium autotrophicum ... 37 3.3
CP000615_622(CP000615|pid:none) Burkholderia vietnamiensis G4 ch... 36 4.3
CP000361_171(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 36 4.3
CP000606_3496(CP000606|pid:none) Shewanella loihica PV-4, comple... 36 4.3
BX950229_1068(BX950229|pid:none) Methanococcus maripaludis strai... 36 4.3
CP000112_2405(CP000112|pid:none) Desulfovibrio desulfuricans G20... 36 4.3
AY140894_3(AY140894|pid:none) Goose hemorrhagic polyomavirus iso... 36 5.6
CP001229_291(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 36 5.6
CP000867_113(CP000867|pid:none) Methanococcus maripaludis C6, co... 36 5.6
AY140894_2(AY140894|pid:none) Goose hemorrhagic polyomavirus iso... 36 5.6
CP000153_1364(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 35 7.4
CP000745_318(CP000745|pid:none) Methanococcus maripaludis C7, co... 35 7.4
CP000866_586(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 35 9.6
CP000155_6401(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 35 9.6
AP008230_3193(AP008230|pid:none) Desulfitobacterium hafniense Y5... 35 9.6
CP000143_1225(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 35 9.6
AJ248288_19(AJ248288|pid:none) Pyrococcus abyssi complete genome... 35 9.6
AE016796_475(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 35 9.6

>CP001399_2159(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,
complete genome.
Length = 312

Score = 53.1 bits (126), Expect = 3e-05
Identities = 27/75 (36%), Positives = 46/75 (61%)
Frame = +3

Query: 1428 LYKGVFYLFLGGLLICYFSKPFIDSIVSLASSWEINPILLAFFLAPIASEMPEILESISL 1607
+ KG+ Y+ +GGL + + SK + +I S+AS + ++P++LA + PIA+E+ E L +I L
Sbjct: 165 IIKGLIYVIIGGLPLTFTSKYLVSTISSIASMFNVSPLILAILITPIAAELEENLTAIKL 224

Query: 1608 SRKGHSQSINIAFSN 1652
S S+ A N
Sbjct: 225 ISDSPS-SVTTALMN 238

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,297,549,573
Number of extensions: 37432613
Number of successful extensions: 102057
Number of sequences better than 10.0: 196
Number of HSP's gapped: 101961
Number of HSP's successfully gapped: 339
Length of query: 632
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 497
Effective length of database: 614,245,399
Effective search space: 305279963303
Effective search space used: 305279963303
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.82 gvh: 0.75 alm: 0.15 top: 0.23 tms: 0.67 mit: 0.28 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

56.0 %: plasma membrane
24.0 %: endoplasmic reticulum
12.0 %: mitochondrial
4.0 %: Golgi
4.0 %: nuclear

>> prediction for Contig-U15070-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 3
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 3
CH (FL, L) 0
CF (FL, S) 4
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0