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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15067-1
Contig ID Contig-U15067-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15067-1 (Contig-U15067-1Q) /CSM_Contig/Contig-U15067-1Q.Seq.d
CTTTTTCACCTCCAACAAGCCAAAGTTGCTTTTATTTTAGCAATTCCTCC
AGGTATCAATATAAAACAATGAAAGACATACATAAGCAAAATATAATGGA
TTCCCTCAGGTTTTCTCATTAACTTGGGAAAGATGAATAAAAGACAGTTA
TTTCAATTGGTTAGATTTTTAAATTTTTCTTGGTTTCCGAAGAATATTAT
TGGCAATTTACAAATTTTTTCTTTGGAGATTTCGATCAAAATCGTTTTAC
AAAAATGAAATATCTTTGGTTATCTTTGTTAACTTTTTCAATTATTTTAA
AGTATTCGTATTGTCAAGAAATATACACATTTGATTGGTCATCTCCACGT
GTCAATATTAATGGACACTCACATTTTAAAGTTGATTACTATCCAGGAAC
TACCAATGCAAATTATAAGGGTGACTTTTTTCCAGATGTAGAGTCAAATC
CAAATGTAAAGAAATATTATTTCACAGCAGATTGTACCATCGATTCAAAT
ACAGATTTCTCTATTCCAGGTTTTATTACACCGGCTTTGAATAAAACAGA
TAATCCTTTTCCACTTATTACAAATTATAATTCAGTTTTAATTGTACCTT
ATGGAATGACAGTTACAATCAGTGGTTACATTCAACCAATTCTAACGTTA
TTAATTAAGGGTAAGGTTGTCCTCAAACCAACTGTAGTAACCAGATATTG
GGCTGGTAAAACCATTATATTTCCAACAGGTGTATTCGAATCAGCTCCAA
CATCATTAGCTTTCAACCATTCAATTAAATTTTATAGTCCCTCATATTGG
GAGTTTCCAGAGTGGGACCCACTTCAAACATCAACATTTATTTCATTGGG
TGGCACTGTTACTCTCACTGGTTTGAATTCAGATTCTATGTGGACAGGTA
GAAATAGTTCATTCACATCATATGGTGGAACCTTTTTAAATACCCCATTC
CCCTTCGACACTGCTAACAAACCTGTATTCAAAATGGGTGGAACAAGAGA
TACATTTGGTAATATCAATTATGTAATGAATAATTATTATACCTCATTTA
GCCCATCCACAGGTCCGAATTTTTTAGAAGATACAAGTTTTGCTGGTGCA
GGTTACATCCTTATGCGTCCATTTACTAAAAACCTTTTCATTACAGGTGA
AGCAAATTGCTCAATGGTATTTACATTAAACTCAACAGTTAATATCCAGA
ATAGCGTTTTTTTTGATGTTGGCCACACTTCACCAGAATTATTAGATGAT
AATATAATCAGTTCAACCTACAGTGTAACCAAAAGAGGAAATAACATACC
AGATAGATACCCAATTACTTTATTACATAACCAAGTTGATAAAAATTATC
TCTAAAAGGTATGTTATCACCAGGATTGGTGGATTTTATTACGACTGTTG
TTTTTTTATACAAACCTTTGTAAACAGAGGATACATTATTCTTTGCAAGT
AAACTATGATATTCTAAATCATTAAGATCAAACTAAGAAAATAAAGTGTA
ATTAGTACGATGTTTAAGATG
Gap no gap
Contig length 1521
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3793534
End point 3795059
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 7
Link to clone list U15067
List of clone(s) 

est1=CFJ477E,1,1521
est2=VFB452F,223,741
est3=VFD760F,225,766
est4=VFB340F,317,763
est5=VFD760Z,758,1520
est6=VFB340Z,822,1521
est7=VFB452Z,822,1496
Translated Amino Acid sequence 
fspptsqscfyfsnssryqyktmkdihkqnimdslrfsh*lgkde*ktvisig*IFKFFL
VSEEYYWQFTNFFFGDFDQNRFTKMKYLWLSLLTFSIILKYSYCQEIYTFDWSSPRVNIN
GHSHFKVDYYPGTTNANYKGDFFPDVESNPNVKKYYFTADCTIDSNTDFSIPGFITPALN
KTDNPFPLITNYNSVLIVPYGMTVTISGYIQPILTLLIKGKVVLKPTVVTRYWAGKTIIF
PTGVFESAPTSLAFNHSIKFYSPSYWEFPEWDPLQTSTFISLGGTVTLTGLNSDSMWTGR
NSSFTSYGGTFLNTPFPFDTANKPVFKMGGTRDTFGNINYVMNNYYTSFSPSTGPNFLED
TSFAGAGYILMRPFTKNLFITGEANCSMVFTLNSTVNIQNSVFFDVGHTSPELLDDNIIS
STYSVTKRGNNIPDRYPITLLHNQVDKNYL*kvcyhqdwwillrllffytnlckqrihys
lqvnydilnh*dqtkkikcn*ydv*d
Translated Amino Acid sequence (All Frames) 
Frame A:
lfhlqqakvafilaippginikq*ktyiski*wipsgflinlgkmnkrqlfqlvrflnfs
wfpkniignlqifsleisikivlqk*nifgylc*lfqlf*sirivkkythlighlhvsil
mdthilklitiqelpmqiirvtffqm*sqiqm*rniisqqivpsiqiqislfqvllhrl*
ikqiilfhllqiiiqf*lylme*qlqsvvtfnqf*ry*lrvrlssnql**pdiglvkply
fqqvysnqlqhh*lstiqlnfivphigsfqsgthfkhqhlfhwvalllslv*iqilcgqv
eivhshhmvepf*iphspstlltnlyskwveqeihlvisim**iiiiphlahpqvrif*k
iqvllvqvtslcvhllktfslqvkqiaqwylh*tqqlisriafflmlatlhqny*mii*s
vqptv*pkeeityqidtqllyyitklikiiskryvitriggfyydccffiqtfvnrgyii
lck*tmif*iikiklrk*svistmfkm


Frame B:
fftsnkpklllf*qflqvsi*nnerht*akyngfpqvfsltwer*ikdsyfnwldf*ifl
gfrrillaiykfflwrfrsksfykneislvifvnffnyfkvfvlsrnihi*lvistcqy*
wtltf*s*llsrnyqckl*g*lfsrcrvkskckeilfhsrlyhrfkyrflysrfyytgfe
*nr*sfstyykl*fsfnctlwndsynqwlhstnsnvin*g*gcpqtncsnqilgw*nhyi
snrcirissniisfqpfn*il*slilgvsrvgptsniniyfigwhcyshwfefrfyvdr*
k*fihiiwwnlfkypiplrhc*qtciqngwnkryiw*yqlcne*llyli*pihrseffrr
ykfcwcrlhpyasiy*kpfhyr*skllngiyiklns*ype*rff*cwphftriir**ynq
fnlqcnqkrk*htr*ipnyfit*ps**klslkgmlspglvdfittvvflykpl*tedtlf
faskl*yskslrsn*enkv*lvrclr


Frame C:
fspptsqscfyfsnssryqyktmkdihkqnimdslrfsh*lgkde*ktvisig*IFKFFL
VSEEYYWQFTNFFFGDFDQNRFTKMKYLWLSLLTFSIILKYSYCQEIYTFDWSSPRVNIN
GHSHFKVDYYPGTTNANYKGDFFPDVESNPNVKKYYFTADCTIDSNTDFSIPGFITPALN
KTDNPFPLITNYNSVLIVPYGMTVTISGYIQPILTLLIKGKVVLKPTVVTRYWAGKTIIF
PTGVFESAPTSLAFNHSIKFYSPSYWEFPEWDPLQTSTFISLGGTVTLTGLNSDSMWTGR
NSSFTSYGGTFLNTPFPFDTANKPVFKMGGTRDTFGNINYVMNNYYTSFSPSTGPNFLED
TSFAGAGYILMRPFTKNLFITGEANCSMVFTLNSTVNIQNSVFFDVGHTSPELLDDNIIS
STYSVTKRGNNIPDRYPITLLHNQVDKNYL*kvcyhqdwwillrllffytnlckqrihys
lqvnydilnh*dqtkkikcn*ydv*d
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15067-1 (Contig-U15067-1Q)
/CSM_Contig/Contig-U15067-1Q.Seq.d
         (1521 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15067-1 (Contig-U15067-1Q) /CSM_Contig/Conti...  2926  0.0
Contig-U12037-1 (Contig-U12037-1Q) /CSM_Contig/Conti...    84  7e-16
Contig-U15760-1 (Contig-U15760-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U11739-1 (Contig-U11739-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U15174-1 (Contig-U15174-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U11777-1 (Contig-U11777-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U16339-1 (Contig-U16339-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U16084-1 (Contig-U16084-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U16035-1 (Contig-U16035-1Q) /CSM_Contig/Conti...    34  0.61

>Contig-U15067-1 (Contig-U15067-1Q) /CSM_Contig/Contig-U15067-1Q.Seq.d
          Length = 1521

 Score = 2926 bits (1476), Expect = 0.0
 Identities = 1506/1521 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    ctttttcacctccaacaagccaaagttgcttttattttagcaattcctccaggtatcaat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    ctttttcacctccaacaagccaaagttgcttttattttagcaattcctccaggtatcaat 60

                                                                        
Query: 61   ataaaacaatgaaagacatacataagcaaaatataatggattccctcaggttttctcatt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ataaaacaatgaaagacatacataagcaaaatataatggattccctcaggttttctcatt 120

                                                                        
Query: 121  aacttgggaaagatgaataaaagacagttatttcaattggttagatttttaaatttttct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aacttgggaaagatgaataaaagacagttatttcaattggttagatttttaaatttttct 180

                                                                        
Query: 181  tggtttccgaagaatattattggcaatttacaaattttttctttggagatttcgatcaaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tggtttccgaagaatattattggcaatttacaaattttttctttggagatttcgatcaaa 240

                                                                        
Query: 241  atcgttttacaaaaatgaaatatctttggttatctttgttaactttttcaattattttaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  atcgttttacaaaaatgaaatatctttggttatctttgttaactttttcaattattttaa 300

                                                                        
Query: 301  agtattcgtattgtcaagaaatatacacatttgattggtcatctccacgtgtcaatatta 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  agtattcgtattgtcaagaaatatacacatttgattggtcatctccacgtgtcaatatta 360

                                                                        
Query: 361  atggacactcacattttaaagttgattactatccaggaactaccaatgcaaattataagg 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  atggacactcacattttaaagttgattactatccaggaactaccaatgcaaattataagg 420

                                                                        
Query: 421  gtgacttttttccagatgtagagtcaaatccaaatgtaaagaaatattatttcacagcag 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  gtgacttttttccagatgtagagtcaaatccaaatgtaaagaaatattatttcacagcag 480

                                                                        
Query: 481  attgtaccatcgattcaaatacagatttctctattccaggttttattacaccggctttga 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  attgtaccatcgattcaaatacagatttctctattccaggttttattacaccggctttga 540

                                                                        
Query: 541  ataaaacagataatccttttccacttattacaaattataattcagttttaattgtacctt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ataaaacagataatccttttccacttattacaaattataattcagttttaattgtacctt 600

                                                                        
Query: 601  atggaatgacagttacaatcagtggttacattcaaccaattctaacgttattaattaagg 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  atggaatgacagttacaatcagtggttacattcaaccaattctaacgttattaattaagg 660

                                                                        
Query: 661  gtaaggttgtcctcaaaccaactgtagtaaccagatattgggctggtaaaaccattatat 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  gtaaggttgtcctcaaaccaactgtagtaaccagatattgggctggtaaaaccattatat 720

                                                                        
Query: 721  ttccaacaggtgtattcgaatcagctccaacatcattagctttcaaccattcaattaaat 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  ttccaacaggtgtattcgaatcagctccaacatcattagctttcaaccattcaattaaat 780

                                                                        
Query: 781  tttatagtccctcatattgggagtttccagagtgggacccacttcaaacatcaacattta 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  tttatagtccctcatattgggagtttccagagtgggacccacttcaaacatcaacattta 840

                                                                        
Query: 841  tttcattgggtggcactgttactctcactggtttgaattcagattctatgtggacaggta 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tttcattgggtggcactgttactctcactggtttgaattcagattctatgtggacaggta 900

                                                                        
Query: 901  gaaatagttcattcacatcatatggtggaacctttttaaataccccattccccttcgaca 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  gaaatagttcattcacatcatatggtggaacctttttaaataccccattccccttcgaca 960

                                                                        
Query: 961  ctgctaacaaacctgtattcaaaatgggtggaacaagagatacatttggtaatatcaatt 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ctgctaacaaacctgtattcaaaatgggtggaacaagagatacatttggtaatatcaatt 1020

                                                                        
Query: 1021 atgtaatgaataattattatacctcatttagcccatccacaggtccgaattttttagaag 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 atgtaatgaataattattatacctcatttagcccatccacaggtccgaattttttagaag 1080

                                                                        
Query: 1081 atacaagttttgctggtgcaggttacatccttatgcgtccatttactaaaaaccttttca 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 atacaagttttgctggtgcaggttacatccttatgcgtccatttactaaaaaccttttca 1140

                                                                        
Query: 1141 ttacaggtgaagcaaattgctcaatggtatttacattaaactcaacagttaatatccaga 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ttacaggtgaagcaaattgctcaatggtatttacattaaactcaacagttaatatccaga 1200

                                                                        
Query: 1201 atagcgnnnnnnnngatgttggccacacttcaccagaattattagatgataatataatca 1260
            ||||||        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 atagcgttttttttgatgttggccacacttcaccagaattattagatgataatataatca 1260

                                                                        
Query: 1261 gttcaacctacagtgtaaccaaaagaggaaataacataccagatagatacccaattactt 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gttcaacctacagtgtaaccaaaagaggaaataacataccagatagatacccaattactt 1320

                                                                        
Query: 1321 tattacataaccaagttgataaaaattatctctaaaaggtatgttatcaccaggattggt 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tattacataaccaagttgataaaaattatctctaaaaggtatgttatcaccaggattggt 1380

                                                                        
Query: 1381 ggattttattacgactgttgnnnnnnnatacaaacctttgtaaacagaggatacattatt 1440
            ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 1381 ggattttattacgactgttgtttttttatacaaacctttgtaaacagaggatacattatt 1440

                                                                        
Query: 1441 ctttgcaagtaaactatgatattctaaatcattaagatcaaactaagaaaataaagtgta 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 ctttgcaagtaaactatgatattctaaatcattaagatcaaactaagaaaataaagtgta 1500

                                 
Query: 1501 attagtacgatgtttaagatg 1521
            |||||||||||||||||||||
Sbjct: 1501 attagtacgatgtttaagatg 1521


>Contig-U12037-1 (Contig-U12037-1Q) /CSM_Contig/Contig-U12037-1Q.Seq.d
          Length = 2525

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 372 cattttaaagttgattactatccaggaactaccaatgcaaattataagggtgactttttt 431
           |||||||||||  |||| |||||||||||||| ||| |||||||||| ||||| |||| |
Sbjct: 179 cattttaaagtaaattattatccaggaactacaaattcaaattataaaggtgatttttat 238

                                 
Query: 432 ccagatgtagagtcaaatccaa 453
           || ||| |||||||||||||||
Sbjct: 239 ccggatttagagtcaaatccaa 260


 Score = 38.2 bits (19), Expect = 0.039
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                  
Query: 891 tggacaggtagaaatagttcattcacatcatatggtgga 929
           ||||| |||||||||||||| |   ||||||||||||||
Sbjct: 698 tggactggtagaaatagttcttattcatcatatggtgga 736


 Score = 38.2 bits (19), Expect = 0.039
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 1164 atggtatttacattaaactcaacagttaatatcca 1198
            |||||||| ||||||||||| |  |||||||||||
Sbjct: 977  atggtattcacattaaactcgaatgttaatatcca 1011


 Score = 36.2 bits (18), Expect = 0.15
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 1297 taccagatagatacccaattac 1318
            |||||||||||||||| |||||
Sbjct: 1110 taccagatagataccctattac 1131


>Contig-U15760-1 (Contig-U15760-1Q) /CSM_Contig/Contig-U15760-1Q.Seq.d
          Length = 2024

 Score = 38.2 bits (19), Expect = 0.039
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 342 tctccacgtgtcaatattaatgg 364
           ||||||||||| |||||||||||
Sbjct: 119 tctccacgtgtaaatattaatgg 141


 Score = 32.2 bits (16), Expect = 2.4
 Identities = 31/36 (86%)
 Strand = Plus / Plus

                                               
Query: 420 ggtgacttttttccagatgtagagtcaaatccaaat 455
           ||||| |||| ||||||  | |||||||||||||||
Sbjct: 191 ggtgatttttatccagacttggagtcaaatccaaat 226


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,915
Number of Sequences: 8402
Number of extensions: 23915
Number of successful extensions: 2249
Number of sequences better than 10.0: 197
length of query: 1521
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1505
effective length of database: 7,941,110
effective search space: 11951370550
effective search space used: 11951370550
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.11
Homology vs DNA 
Query= Contig-U15067-1 (Contig-U15067-1Q) /CSM_Contig/Contig-U15067-1Q.Seq.d
         (1521 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ362038) Dictyostelium discoideum cDNA clone:ddc19j20, 5' ...  1219   0.0    1
(BJ412464) Dictyostelium discoideum cDNA clone:ddv8h15, 5' e...  1066   0.0    1
(BJ411245) Dictyostelium discoideum cDNA clone:ddv3h14, 5' e...  1025   0.0    1
(BJ430749) Dictyostelium discoideum cDNA clone:ddv8h15, 3' e...   890   0.0    3
(BJ375757) Dictyostelium discoideum cDNA clone:ddc19j20, 3' ...   833   0.0    3
(BJ429467) Dictyostelium discoideum cDNA clone:ddv3h14, 3' e...   763   0.0    3
(BJ429434) Dictyostelium discoideum cDNA clone:ddv3p09, 3' e...   763   0.0    3
(BJ411219) Dictyostelium discoideum cDNA clone:ddv3p09, 5' e...   886   0.0    1
(BJ427381) Dictyostelium discoideum cDNA clone:ddv62b10, 5' ...    84   2e-11  1
(BJ426434) Dictyostelium discoideum cDNA clone:ddv58p22, 5' ...    84   2e-11  1
(BJ426187) Dictyostelium discoideum cDNA clone:ddv58n03, 5' ...    84   2e-11  1
(BJ425895) Dictyostelium discoideum cDNA clone:ddv57n08, 5' ...    84   2e-11  1
(BJ425512) Dictyostelium discoideum cDNA clone:ddv55p20, 5' ...    84   2e-11  1
(BJ423933) Dictyostelium discoideum cDNA clone:ddv50j23, 5' ...    84   2e-11  1
(BJ423184) Dictyostelium discoideum cDNA clone:ddv48h09, 5' ...    84   2e-11  1
(BJ421874) Dictyostelium discoideum cDNA clone:ddv44j04, 5' ...    84   2e-11  1
(BJ420638) Dictyostelium discoideum cDNA clone:ddv39o23, 5' ...    84   2e-11  1
(BJ418006) Dictyostelium discoideum cDNA clone:ddv31h09, 5' ...    84   2e-11  1
(BJ417982) Dictyostelium discoideum cDNA clone:ddv31b10, 5' ...    84   2e-11  1
(BJ392205) Dictyostelium discoideum cDNA clone:dds26d21, 5' ...    56   2e-09  3
(BJ420654) Dictyostelium discoideum cDNA clone:ddv40b06, 5' ...    76   4e-09  1
(BJ422246) Dictyostelium discoideum cDNA clone:ddv45g09, 5' ...    38   4e-08  4
(BJ422272) Dictyostelium discoideum cDNA clone:ddv45l11, 5' ...    38   5e-08  4
(AF019107) Dictyostelium discoideum unknown (DG1041) gene, c...    48   4e-06  3
(BJ419962) Dictyostelium discoideum cDNA clone:ddv37d19, 5' ...    38   8e-04  3
(BJ423650) Dictyostelium discoideum cDNA clone:ddv49n23, 5' ...    38   0.001  3
(AC149306) Medicago truncatula clone mth2-88b8, complete seq...    44   0.84   5
(CU467104) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.99   1
(CU052293) Equus caballus GSS, BAC clone CH241-153I9, SP6 en...    48   0.99   1
(CE046701) tigr-gss-dog-17000357074552 Dog Library Canis lup...    48   0.99   1
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   1.1    10
(AE014303) Homo sapiens chromosome 13q34 schizophrenia regio...    36   1.7    9
(AC177006) Strongylocentrotus purpuratus clone R3-37D23, WOR...    36   2.0    2
(AC180658) Strongylocentrotus purpuratus clone R3-3089E7, WO...    36   2.0    2
(AC178999) Strongylocentrotus purpuratus clone R3-3122P12, W...    36   2.0    2
(BX545906) Mouse DNA sequence from clone RP23-476J8 on chrom...    40   2.2    5
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    32   2.6    10
(AC060779) Homo sapiens chromosome 4 clone RP11-308A8 map 4,...    34   2.8    7
(BJ333804) Dictyostelium discoideum cDNA clone:dda44h01, 5' ...    38   3.1    2
(AC180181) Strongylocentrotus purpuratus clone R3-4001J24, W...    38   3.1    8
(BJ333716) Dictyostelium discoideum cDNA clone:dda43c20, 5' ...    38   3.2    2
(FE267476) CAZO6144.fwd CAZO Naegleria gruberi Flagellate St...    38   3.6    2
(BJ334118) Dictyostelium discoideum cDNA clone:dda45o03, 5' ...    38   3.7    2
(BJ422632) Dictyostelium discoideum cDNA clone:ddv46f17, 5' ...    38   3.7    2
(FE246914) CAPG9672.rev CAPG Naegleria gruberi amoeba stage ...    38   3.8    2
(BJ335210) Dictyostelium discoideum cDNA clone:dda49h12, 5' ...    38   3.8    2
(FE248414) CAPH1674.rev CAPH Naegleria gruberi amoeba stage ...    38   3.8    2
(BJ420505) Dictyostelium discoideum cDNA clone:ddv39c17, 5' ...    38   3.8    2
(FE248925) CAPH1982.rev CAPH Naegleria gruberi amoeba stage ...    38   3.8    2
(FE267475) CAZO6144.rev CAZO Naegleria gruberi Flagellate St...    38   3.9    2
(FE248926) CAPH1982.fwd CAPH Naegleria gruberi amoeba stage ...    38   3.9    2
(FE246915) CAPG9672.fwd CAPG Naegleria gruberi amoeba stage ...    38   3.9    2
(AC161399) Medicago truncatula chromosome 2 clone mte1-30k4,...    46   3.9    1
(AC154113) Medicago truncatula chromosome 2 clone mte1-25a23...    46   3.9    1
(CQ869778) Sequence 199 from Patent WO2004074320.                  46   3.9    1
(AC079233) Homo sapiens BAC clone RP11-372N22 from 4, comple...    46   3.9    1
(AC158082) Bos taurus clone CH240-52F8, WORKING DRAFT SEQUEN...    46   3.9    1
(AC119385) Rattus norvegicus clone CH230-249J3, *** SEQUENCI...    46   3.9    1
(AC094140) Rattus norvegicus clone CH230-2L8, *** SEQUENCING...    46   3.9    1
(CU469255) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.9    1
(AC183067) Bos taurus clone CH240-70L18, WORKING DRAFT SEQUE...    46   3.9    1
(AC175278) Bos taurus clone CH240-524G2, WORKING DRAFT SEQUE...    46   3.9    1
(ET808266) CHO_OF713xa20r1.ab1 CHO_OF Nicotiana tabacum geno...    46   3.9    1
(EJ118410) 1092343362573 Global-Ocean-Sampling_GS-27-01-01-1...    46   3.9    1
(CZ832622) OC__Ba0214O11.r OC__Ba Oryza coarctata genomic cl...    46   3.9    1
(BZ881367) CH240_253P24.TV CHORI-240 Bos taurus genomic clon...    46   3.9    1
(FE268631) CAZO6864.fwd CAZO Naegleria gruberi Flagellate St...    38   3.9    2
(FE268630) CAZO6864.rev CAZO Naegleria gruberi Flagellate St...    38   3.9    2
(FE256347) CAPH6068.fwd CAPH Naegleria gruberi amoeba stage ...    38   3.9    2
(FE256346) CAPH6068.rev CAPH Naegleria gruberi amoeba stage ...    38   3.9    2
(BJ422004) Dictyostelium discoideum cDNA clone:ddv44c16, 5' ...    38   4.0    2
(FE249454) CAPH2291.fwd CAPH Naegleria gruberi amoeba stage ...    38   4.0    2
(FE248415) CAPH1674.fwd CAPH Naegleria gruberi amoeba stage ...    38   4.0    2
(BQ952103) AGENCOURT_8860186 Lupski_sciatic_nerve Homo sapie...    36   4.4    3
(DU245320) 1098574246576 CHORI-243 Ovis aries genomic clone ...    36   4.7    2
(FE250180) CAPH2702.rev CAPH Naegleria gruberi amoeba stage ...    38   4.7    2
(DU452751) 1098415738610 CHORI-243 Ovis aries genomic clone ...    36   4.8    2
(BW494727) Ciona intestinalis cDNA, clone:cima010b15, 3'end,...    40   5.1    2
(DU185410) 1098553708697 CHORI-243 Ovis aries genomic clone ...    36   5.3    2
(AC111826) Rattus norvegicus clone CH230-272I2, *** SEQUENCI...    34   5.4    8
(AC202346) Medicago truncatula clone mth2-2n5, WORKING DRAFT...    36   5.6    12
(BX327990) human full-length cDNA 5-PRIME end of clone CS0DI...    38   5.8    2
(AC179457) Strongylocentrotus purpuratus clone R3-63G17, WOR...    40   6.0    7
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    34   8.0    23
(AM455115) Vitis vinifera contig VV78X205076.7, whole genome...    34   8.3    2
(AM468530) Vitis vinifera contig VV78X010393.11, whole genom...    34   8.4    2
(DJ325013) Method for identification of useful proteins deri...    44   8.8    2
(DJ325012) Method for identification of useful proteins deri...    44   8.8    2
(DJ325011) Method for identification of useful proteins deri...    44   8.8    2
(DJ324989) Method for identification of useful proteins deri...    44   8.8    2
(DJ324988) Method for identification of useful proteins deri...    44   8.8    2
(DJ324987) Method for identification of useful proteins deri...    44   8.8    2
(DD136904) A method for measuring absolute amount of gene ex...    44   8.8    2
(CS821011) Sequence 7920 from Patent WO2007106407.                 44   8.8    2
(L38424) Bacillus subtilis dihydropicolinate reductase (jojE...    44   8.8    2
(CT476552) Sus scrofa genomic clone CH242-431K13, genomic su...    32   9.7    2
(CT549326) A BAC library has been constructed from cultivar ...    34   9.7    2
(AC151559) Dasypus novemcinctus clone VMRC5-405N5, WORKING D...    34   9.9    8

>(BJ362038) Dictyostelium discoideum cDNA clone:ddc19j20, 5' end,
           single read.
          Length = 615

 Score = 1219 bits (615), Expect = 0.0
 Identities = 615/615 (100%)
 Strand = Plus / Plus


Query: 1   ctttttcacctccaacaagccaaagttgcttttattttagcaattcctccaggtatcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctttttcacctccaacaagccaaagttgcttttattttagcaattcctccaggtatcaat 60


Query: 61  ataaaacaatgaaagacatacataagcaaaatataatggattccctcaggttttctcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataaaacaatgaaagacatacataagcaaaatataatggattccctcaggttttctcatt 120


Query: 121 aacttgggaaagatgaataaaagacagttatttcaattggttagatttttaaatttttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacttgggaaagatgaataaaagacagttatttcaattggttagatttttaaatttttct 180


Query: 181 tggtttccgaagaatattattggcaatttacaaattttttctttggagatttcgatcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggtttccgaagaatattattggcaatttacaaattttttctttggagatttcgatcaaa 240


Query: 241 atcgttttacaaaaatgaaatatctttggttatctttgttaactttttcaattattttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcgttttacaaaaatgaaatatctttggttatctttgttaactttttcaattattttaa 300


Query: 301 agtattcgtattgtcaagaaatatacacatttgattggtcatctccacgtgtcaatatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtattcgtattgtcaagaaatatacacatttgattggtcatctccacgtgtcaatatta 360


Query: 361 atggacactcacattttaaagttgattactatccaggaactaccaatgcaaattataagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggacactcacattttaaagttgattactatccaggaactaccaatgcaaattataagg 420


Query: 421 gtgacttttttccagatgtagagtcaaatccaaatgtaaagaaatattatttcacagcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtgacttttttccagatgtagagtcaaatccaaatgtaaagaaatattatttcacagcag 480


Query: 481 attgtaccatcgattcaaatacagatttctctattccaggttttattacaccggctttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attgtaccatcgattcaaatacagatttctctattccaggttttattacaccggctttga 540


Query: 541 ataaaacagataatccttttccacttattacaaattataattcagttttaattgtacctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ataaaacagataatccttttccacttattacaaattataattcagttttaattgtacctt 600


Query: 601 atggaatgacagtta 615
           |||||||||||||||
Sbjct: 601 atggaatgacagtta 615

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,898,899,489
Number of extensions: 111881686
Number of successful extensions: 9345675
Number of sequences better than 10.0: 98
Length of query: 1521
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1497
Effective length of database: 97,308,875,965
Effective search space: 145671387319605
Effective search space used: 145671387319605
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U15067-1 (Contig-U15067-1Q) /CSM_Contig/Contig-U15067-1Q.Seq.d
         (1521 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T23882(T23882) hypothetical protein R03G8.6 - Caenorhabditis ele...    38   0.86
CP000745_1766(CP000745|pid:none) Methanococcus maripaludis C7, c...    35   5.6
CP000867_113(CP000867|pid:none) Methanococcus maripaludis C6, co...    35   5.6
CP001404_2761(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...    35   5.6
CP000609_605(CP000609|pid:none) Methanococcus maripaludis C5, co...    35   5.6
CP001402_2650(CP001402|pid:none) Sulfolobus islandicus M.16.4, c...    35   7.3
CP001399_2655(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    35   7.3
CP001053_2346(CP001053|pid:none) Burkholderia phytofirmans PsJN ...    35   9.5
CP000937_738(CP000937|pid:none) Francisella philomiragia subsp. ...    35   9.5

>T23882(T23882) hypothetical protein R03G8.6 - Caenorhabditis elegans
            &Z69794_4(Z69794|pid:none)
          Length = 747

 Score = 38.1 bits (87), Expect = 0.86
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
 Frame = +3

Query: 882  DSMWT--GRNSSFTSYGGTFLNTPFPFDT-----ANKPVFKMGGTRDTFG-NINYVMNNY 1037
            D +W   G  S  TSYG TFL+  +  DT        P    GG    FG N++ VMNN
Sbjct: 345  DHIWLNEGFASYMTSYGLTFLDPDYQRDTFYLNCQFNPQINDGGVSLNFGKNLSSVMNNA 404

Query: 1038 YTSFSPSTGPNFLEDTSFAGAGYILMRPFTKNLFITGEANCSMVFTL--NSTVNIQNSVF 1211
             T +               G  ++ M    +N+F T   N ++ F L  N   N+ ++
Sbjct: 405  ATVY-------------MKGCSFVRM---LENIFGTEYFNEAIKFYLEKNQYDNVDDNDL 448

Query: 1212 FDVGHTSPELLDDN 1253
            ++   TS E LD N
Sbjct: 449  YEAFRTSSETLDTN 462

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,724,879,949
Number of extensions: 59765664
Number of successful extensions: 133327
Number of sequences better than 10.0: 9
Number of HSP's gapped: 133272
Number of HSP's successfully gapped: 9
Length of query: 507
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 374
Effective length of database: 620,718,517
Effective search space: 232148725358
Effective search space used: 232148725358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.57  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U15067-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 3
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0