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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15064-1
Contig ID Contig-U15064-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15064-1 (Contig-U15064-1Q) /CSM_Contig/Contig-U15064-1Q.Seq.d
ACAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTAA
TTTTTTTTAAAATTAAAATTATATTTTTATTTTATTTTATTTTTATTTTA
TTTAATTTAATTCGTCAATTACAACTTGAGTTGAATCATTTAAAATATCA
TCAACTAATTGATTATATAATTCATTAATATCAATGAAATCACCAATAGC
AGAAGGAATTGAAGAGGATAAAGTATTTAAGAGTGGTTTAGTTAATGGAT
TAATAATTTTACAAAGAGTTGGTTTAACCATTTCACGTACAACAAATTTC
AATTGCATATTTGTGCCTAAAATGACATCATGTTGATATTTTGAATGAGT
TTGATTTTTAGCAGAAGCCACATCTACTTGATCTTGAGTAACAGTTTTCT
CAAGAGTGTAAGCACCATCATAGGCCATATTATTAATAGATTCTTTAATA
TCGTAACAGATAAAGTAGGAGGAATAGTCTCTAAAGATTGGTCTATACTC
CTCCACAATACTATACAATGGTGAGATTTTATCTTTGGCAGGGTACATAG
TCCAATAGGAGTTTGGATAACTTCTATAGGAGGAGAAAGACTCGGTTGAG
CCATTGCCATTGTATGCATTTGTTTTCTCATTCCAAATTTTGAGAGATTC
ATCAAACCCATTCTCAATTGGAGTTCTAATTTCACCAATGATTTTCTTGA
GGTGTTTATTAACATGCTCCTCCATTGCTGGCTTAATCTGTGACATCATT
GACTCTCTCATCTTGTTGATGATATTGGTTTGGGCTTGAGCGATTGGGTC
TACTTGATTCTTGATTCTTGGCTCAATGGTTGGACGAAGTTCTTCCACGG
TTTTACTTAGACCTGTCCAGGCGGGTGCGACGGCACTGCTGACCATGCCT
TCGATCACTGTCATCATTTTATTTCTAAGATAGTTACGAATGAACCATGG
TGCATTTGGAAGTTTAGATAATGCTCTACCCAAAATATCATACTCAATCT
CATCTAAAATTATATCGGAAAGGATTTGATTCTCATTACCACCGTATCCA
AACCAACCCCAACGACCTAATGACCAACGTGTATTACGAACTGCAATACC
AAATGCAGCGATATGACATGGATCTTTGTTTTTAAAACCATGGGATCTTC
TGCAACATGTTTTGAAAATTTCAATCCATTCTTTAAACTCTTCTTCATTA
GCACATTGAATATAATAACAACGACGTGAATAATGATATAATTCAATTGT
AAATGGTGGTAATTGTGCTGGCTTTGGTATTGAACTTGTATCAACTCCCA
TCTTTTCTGCTATCTTTAAAATTCTATCTAATCCTGATTTATTTGGATCA
TCATTTACTGAATAACCACATAAATTAATTGTACCTTTTTTATTTGTATG
TTTATCATCAACAAAGTAGTCAATTGAATAGTCATATCTAACTACAAAGT
GTCTTTTTAACCAATTCTTTCTAATTGCTCCTAATTTTACCAAATAGCCN
CTAAAAACATCAGATTTATCATGGTCTCTTGGTCTTGGTTCTAATAAATA
TGGAGATGGTATTGCTTTGGCATCTTTGATTGCTTTCTTGGTTATTTGGA
TTGTGTATGCTTTAATATATTCTTTTGTAAAAGTTTCCAACATTGCTTTG
GTTAACTCAACTATCTCATTTTTAATTTGNGCATCCNTTTTGGTTTTATA
TATATATTAATAAATATAGTAAAATAATTTAAATAAAAAAAAAATAAAAA
AAAATAACAATGAAATCGGATGAATAAAATAAAAAGTGATACGGAAAATA
AAAAAATAAAAAT
Gap no gap
Contig length 1813
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 845597
End point 847404
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 5
Link to clone list U15064
List of clone(s) 

est1=FC-IC0169F,1,288
est2=FC-IC1663Z,1,288
est3=VFN135Z,109,700
est4=CFI375E,122,1427
est5=VFN135F,1239,1813
Translated Amino Acid sequence 
tsfffffffffffffinff*n*nyifilfyfyfi*fnssitt*vesfkisstn*lynsli
smkspiaegieedkvfksglvngliilqrvgltisrttnfncifvpkmtsc*yfe*v*fl
aeatst*s*vtvfsrv*aps*aillidslis*qik*ee*slkiglysstilyngeilsla
gyivq*efg*ll*eekdsveplplyafvfsfqilrdssnpfsigvlispmiflrclltcs
siaglicdiidslillmilvwa*aigst*flilgsmvgrssstvllrpvqagatalltmp
sitviilflr*lrmnhgafgsldnalpkisysisskiiseri*fslppypnqpqrpndqr
vlrtaipnaai*hgslflkpwdllqhvlkisihslnssslah*i**qrre**ynsivngg
ncagfgielvstpifsaifkilsnpdlfgssfte*phklivpflfvclsstk*sie*syl
ttkclfnqffliapnftk*PLKTSDLSWSLGLGSNKYGDGIALASLIAFLVIWIVYALIY
SFVKVSNIALVNSTISFLIXASXLVLYIY**i**nnlnkkkikknnneig*ik*kvirki
kk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
tsfffffffffffffinff*n*nyifilfyfyfi*fnssitt*vesfkisstn*lynsli
smkspiaegieedkvfksglvngliilqrvgltisrttnfncifvpkmtsc*yfe*v*fl
aeatst*s*vtvfsrv*aps*aillidslis*qik*ee*slkiglysstilyngeilsla
gyivq*efg*ll*eekdsveplplyafvfsfqilrdssnpfsigvlispmiflrclltcs
siaglicdiidslillmilvwa*aigst*flilgsmvgrssstvllrpvqagatalltmp
sitviilflr*lrmnhgafgsldnalpkisysisskiiseri*fslppypnqpqrpndqr
vlrtaipnaai*hgslflkpwdllqhvlkisihslnssslah*i**qrre**ynsivngg
ncagfgielvstpifsaifkilsnpdlfgssfte*phklivpflfvclsstk*sie*syl
ttkclfnqffliapnftk*PLKTSDLSWSLGLGSNKYGDGIALASLIAFLVIWIVYALIY
SFVKVSNIALVNSTISFLIXASXLVLYIY**i**nnlnkkkikknnneig*ik*kvirki
kk*k


Frame B:
qafffffffffffflliffkikiiflfyfifilfnlirqlqlelnhlkyhqlidyiih*y
q*nhq*qkelkrikylrvv*lmd**fykelv*pfhvqqisiaylclk*hhvdilnefdf*
qkphlldle*qfsqeckhhhrpyy**il*yrnr*srrnsl*rlvytppqyytmvrfylwq
gt*snrsldnfyrrrktrlshchcmhlfshskf*eihqthsqlef*fhq*fs*gvy*hap
plla*svtsltlssc**ywfglerlgllds*flaqwldevlprfyldlsrrvrrhc*pcl
rslssfyf*dsye*tmvhlev*imlypkyhtqshlklyrkgfdshyhriqtnpndlmtnv
yyelqyqmqrydmdlcf*nhgifcnmf*kfqsil*tllh*hieynnndvnndiiql*mvv
ivlalvlnlyqlpsfllslkfyliliyldhhllnnhin*lylfylyvyhqqssqlnshi*
lqsvfltnsf*lllilpnsx*khqiyhgllvlvlinmemvllwhl*llswlfglcml*yi
ll*kfptllwltqlshf*fxhpfwfyiyinkyskii*ikkk*kkitmksde*nkk*ygk*
knkn


Frame C:
klffffffffffffy*fflklklyfyfilflfyli*fvnynls*ii*niin*lii*fini
neitnsrrn*rg*si*ewfs*winnftkswfnhftynkfqlhica*ndimlif*mslifs
rshiylilsnsflksvstiighiinrffnivtdkvggivskdwsillhntiqw*dfifgr
vhspigvwitsiggerlg*aiaivcicflipnferfikpilnwssnftndflevfinmll
hcwlnl*hh*lshlvddiglglsdwvylildswlngwtkffhgft*tcpggcdgtadhaf
dhchhfiskivtnepwciwkfr*cstqniilnli*nyigkdlilittvskptptt**ptc
itncntkcsdmtwifvfktmgssatcfenfnpffklffistlniittt*imi*fnckww*
lcwlwy*tcinshlfcyl*nsi*s*fiwiiiy*itt*inctfficmfiinkvvn*ivisn
ykvsf*pilsncs*fyqiaxknirfimvswswf**iwrwycfgifdcflgyldcvcfnif
fcksfqhcfg*lnylifnlxixfgfiyilinivk*fk*kknkkk*q*nrmnkiksdtenk
kik
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15064-1 (Contig-U15064-1Q)
/CSM_Contig/Contig-U15064-1Q.Seq.d
         (1813 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15064-1 (Contig-U15064-1Q) /CSM_Contig/Conti...  3203  0.0
Contig-U16230-1 (Contig-U16230-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U16204-1 (Contig-U16204-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U15741-1 (Contig-U15741-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U15260-1 (Contig-U15260-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U14944-1 (Contig-U14944-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U13493-1 (Contig-U13493-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U08936-1 (Contig-U08936-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U03742-1 (Contig-U03742-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U16533-1 (Contig-U16533-1Q) /CSM_Contig/Conti...    36  0.18

>Contig-U15064-1 (Contig-U15064-1Q) /CSM_Contig/Contig-U15064-1Q.Seq.d
          Length = 1813

 Score = 3203 bits (1616), Expect = 0.0
 Identities = 1625/1625 (100%)
 Strand = Plus / Plus

                                                                        
Query: 110  attcgtcaattacaacttgagttgaatcatttaaaatatcatcaactaattgattatata 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110  attcgtcaattacaacttgagttgaatcatttaaaatatcatcaactaattgattatata 169

                                                                        
Query: 170  attcattaatatcaatgaaatcaccaatagcagaaggaattgaagaggataaagtattta 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170  attcattaatatcaatgaaatcaccaatagcagaaggaattgaagaggataaagtattta 229

                                                                        
Query: 230  agagtggtttagttaatggattaataattttacaaagagttggtttaaccatttcacgta 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230  agagtggtttagttaatggattaataattttacaaagagttggtttaaccatttcacgta 289

                                                                        
Query: 290  caacaaatttcaattgcatatttgtgcctaaaatgacatcatgttgatattttgaatgag 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290  caacaaatttcaattgcatatttgtgcctaaaatgacatcatgttgatattttgaatgag 349

                                                                        
Query: 350  tttgatttttagcagaagccacatctacttgatcttgagtaacagttttctcaagagtgt 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350  tttgatttttagcagaagccacatctacttgatcttgagtaacagttttctcaagagtgt 409

                                                                        
Query: 410  aagcaccatcataggccatattattaatagattctttaatatcgtaacagataaagtagg 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410  aagcaccatcataggccatattattaatagattctttaatatcgtaacagataaagtagg 469

                                                                        
Query: 470  aggaatagtctctaaagattggtctatactcctccacaatactatacaatggtgagattt 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470  aggaatagtctctaaagattggtctatactcctccacaatactatacaatggtgagattt 529

                                                                        
Query: 530  tatctttggcagggtacatagtccaataggagtttggataacttctataggaggagaaag 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530  tatctttggcagggtacatagtccaataggagtttggataacttctataggaggagaaag 589

                                                                        
Query: 590  actcggttgagccattgccattgtatgcatttgttttctcattccaaattttgagagatt 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590  actcggttgagccattgccattgtatgcatttgttttctcattccaaattttgagagatt 649

                                                                        
Query: 650  catcaaacccattctcaattggagttctaatttcaccaatgattttcttgaggtgtttat 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  catcaaacccattctcaattggagttctaatttcaccaatgattttcttgaggtgtttat 709

                                                                        
Query: 710  taacatgctcctccattgctggcttaatctgtgacatcattgactctctcatcttgttga 769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  taacatgctcctccattgctggcttaatctgtgacatcattgactctctcatcttgttga 769

                                                                        
Query: 770  tgatattggtttgggcttgagcgattgggtctacttgattcttgattcttggctcaatgg 829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  tgatattggtttgggcttgagcgattgggtctacttgattcttgattcttggctcaatgg 829

                                                                        
Query: 830  ttggacgaagttcttccacggttttacttagacctgtccaggcgggtgcgacggcactgc 889
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  ttggacgaagttcttccacggttttacttagacctgtccaggcgggtgcgacggcactgc 889

                                                                        
Query: 890  tgaccatgccttcgatcactgtcatcattttatttctaagatagttacgaatgaaccatg 949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  tgaccatgccttcgatcactgtcatcattttatttctaagatagttacgaatgaaccatg 949

                                                                        
Query: 950  gtgcatttggaagtttagataatgctctacccaaaatatcatactcaatctcatctaaaa 1009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  gtgcatttggaagtttagataatgctctacccaaaatatcatactcaatctcatctaaaa 1009

                                                                        
Query: 1010 ttatatcggaaaggatttgattctcattaccaccgtatccaaaccaaccccaacgaccta 1069
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 ttatatcggaaaggatttgattctcattaccaccgtatccaaaccaaccccaacgaccta 1069

                                                                        
Query: 1070 atgaccaacgtgtattacgaactgcaataccaaatgcagcgatatgacatggatctttgt 1129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 atgaccaacgtgtattacgaactgcaataccaaatgcagcgatatgacatggatctttgt 1129

                                                                        
Query: 1130 ttttaaaaccatgggatcttctgcaacatgttttgaaaatttcaatccattctttaaact 1189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 ttttaaaaccatgggatcttctgcaacatgttttgaaaatttcaatccattctttaaact 1189

                                                                        
Query: 1190 cttcttcattagcacattgaatataataacaacgacgtgaataatgatataattcaattg 1249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 cttcttcattagcacattgaatataataacaacgacgtgaataatgatataattcaattg 1249

                                                                        
Query: 1250 taaatggtggtaattgtgctggctttggtattgaacttgtatcaactcccatcttttctg 1309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 taaatggtggtaattgtgctggctttggtattgaacttgtatcaactcccatcttttctg 1309

                                                                        
Query: 1310 ctatctttaaaattctatctaatcctgatttatttggatcatcatttactgaataaccac 1369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 ctatctttaaaattctatctaatcctgatttatttggatcatcatttactgaataaccac 1369

                                                                        
Query: 1370 ataaattaattgtaccttttttatttgtatgtttatcatcaacaaagtagtcaattgaat 1429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 ataaattaattgtaccttttttatttgtatgtttatcatcaacaaagtagtcaattgaat 1429

                                                                        
Query: 1430 agtcatatctaactacaaagtgtctttttaaccaattctttctaattgctcctaatttta 1489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 agtcatatctaactacaaagtgtctttttaaccaattctttctaattgctcctaatttta 1489

                                                                        
Query: 1490 ccaaatagccnctaaaaacatcagatttatcatggtctcttggtcttggttctaataaat 1549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 ccaaatagccnctaaaaacatcagatttatcatggtctcttggtcttggttctaataaat 1549

                                                                        
Query: 1550 atggagatggtattgctttggcatctttgattgctttcttggttatttggattgtgtatg 1609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1550 atggagatggtattgctttggcatctttgattgctttcttggttatttggattgtgtatg 1609

                                                                        
Query: 1610 ctttaatatattcttttgtaaaagtttccaacattgctttggttaactcaactatctcat 1669
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 ctttaatatattcttttgtaaaagtttccaacattgctttggttaactcaactatctcat 1669

                                                                        
Query: 1670 ttttaatttgngcatccnttttggttttatatatatattaataaatatagtaaaataatt 1729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1670 ttttaatttgngcatccnttttggttttatatatatattaataaatatagtaaaataatt 1729

                 
Query: 1730 taaat 1734
            |||||
Sbjct: 1730 taaat 1734


 Score = 36.2 bits (18), Expect = 0.18
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1755 taacaatgaaatcggatg 1772
            ||||||||||||||||||
Sbjct: 1755 taacaatgaaatcggatg 1772


>Contig-U16230-1 (Contig-U16230-1Q) /CSM_Contig/Contig-U16230-1Q.Seq.d
          Length = 2562

 Score = 38.2 bits (19), Expect = 0.046
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1706 attaataaatatagtaaaa 1724
            |||||||||||||||||||
Sbjct: 236  attaataaatatagtaaaa 218


>Contig-U16204-1 (Contig-U16204-1Q) /CSM_Contig/Contig-U16204-1Q.Seq.d
          Length = 2024

 Score = 38.2 bits (19), Expect = 0.046
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1182 tttaaactcttcttcatta 1200
            |||||||||||||||||||
Sbjct: 387  tttaaactcttcttcatta 369


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,145
Number of Sequences: 8402
Number of extensions: 33145
Number of successful extensions: 3554
Number of sequences better than 10.0: 135
length of query: 1813
length of database: 8,075,542
effective HSP length: 17
effective length of query: 1796
effective length of database: 7,932,708
effective search space: 14247143568
effective search space used: 14247143568
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 1.11
Homology vs DNA 
Query= Contig-U15064-1 (Contig-U15064-1Q) /CSM_Contig/Contig-U15064-1Q.Seq.d
         (1813 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ435492) Dictyostelium discoideum cDNA clone:ddv27e09, 3' ...  1160   0.0    1
(BJ375200) Dictyostelium discoideum cDNA clone:ddc17f19, 3' ...   916   0.0    3
(BJ361576) Dictyostelium discoideum cDNA clone:ddc17f19, 5' ...   876   0.0    1
(BJ416787) Dictyostelium discoideum cDNA clone:ddv27e09, 5' ...   872   0.0    1
(AU275174) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   349   2e-91  1
(AU271387) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   349   2e-91  1
(EK351661) 1095467975596 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.041  2
(ER317599) 1092344154668 Global-Ocean-Sampling_GS-34-01-01-1...    50   0.30   1
(EJ537559) 1092955270598 Global-Ocean-Sampling_GS-29-01-01-1...    34   0.50   3
(ER616360) 1093017261527 Global-Ocean-Sampling_GS-36-01-01-2...    46   0.56   2
(AC177136) Strongylocentrotus purpuratus clone R3-4014L2, WO...    48   1.2    1
(AC176158) Strongylocentrotus purpuratus clone R3-2M11, WORK...    48   1.2    1
(EJ565300) 1092959705774 Global-Ocean-Sampling_GS-29-01-01-1...    48   1.2    1
(DY341216) OB_SEb04D23.r OB_SEb Ocimum basilicum cDNA clone ...    48   1.2    1
(DY341215) OB_SEb04D23.f OB_SEb Ocimum basilicum cDNA clone ...    48   1.2    1
(DY341193) OB_SEb04C24.f OB_SEb Ocimum basilicum cDNA clone ...    48   1.2    1
(EK080789) 1092961103977 Global-Ocean-Sampling_GS-31-01-01-1...    40   2.0    2
(AC176872) Strongylocentrotus purpuratus clone R3-31F17, WOR...    36   2.3    2
(AL389924) Human DNA sequence from clone RP11-544N10 on chro...    32   2.5    2
(DN566330) 92987577 Sea Urchin primary mesenchyme cell cDNA ...    36   3.1    2
(DN566368) 92836064 Sea Urchin primary mesenchyme cell cDNA ...    36   3.1    2
(AY293579) Francisella tularensis subsp. novicida strain U11...    40   4.4    3
(AL844859) Mouse DNA sequence from clone RP23-263O20 on chro...    46   4.7    1
(AC160410) Mus musculus 10 BAC RP24-356L3 (Roswell Park Canc...    46   4.7    1
(AC153906) Mus musculus 10 BAC RP23-191C14 (Roswell Park Can...    46   4.7    1
(AM467400) Vitis vinifera contig VV78X036823.6, whole genome...    46   4.7    1
(AM439321) Vitis vinifera contig VV78X124710.6, whole genome...    46   4.7    1
(AC187000) Canis Familiaris chromosome 13, clone XX-408C11, ...    46   4.7    1
(AL157883) Human DNA sequence from clone RP11-360J12 on chro...    46   4.7    1
(AC107696) Mus musculus chromosome 10 clone RP24-435L12 map ...    46   4.7    1
(AC095808) Rattus norvegicus clone CH230-10G20, *** SEQUENCI...    46   4.7    1
(AC094814) Rattus norvegicus clone CH230-5J2, *** SEQUENCING...    46   4.7    1
(CU915448) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.7    1
(CU469194) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.7    1
(AC183112) Bos taurus clone CH240-281P2, WORKING DRAFT SEQUE...    46   4.7    1
(AK080893) Mus musculus 4 days neonate male adipose cDNA, RI...    46   4.7    1
(ER596240) 1093016223940 Global-Ocean-Sampling_GS-36-01-01-2...    46   4.7    1
(ER482404) 1093015272492 Global-Ocean-Sampling_GS-35-01-01-1...    46   4.7    1
(ER479919) 1093015257607 Global-Ocean-Sampling_GS-35-01-01-1...    46   4.7    1
(ER397295) 1095347002997 Global-Ocean-Sampling_GS-34-01-01-1...    46   4.7    1
(ER390697) 1095326006069 Global-Ocean-Sampling_GS-34-01-01-1...    46   4.7    1
(EK420952) 1095515505910 Global-Ocean-Sampling_GS-31-01-01-1...    46   4.7    1
(AM638263) Entamoeba dispar GSS, clone dispar51d03.q1k.            46   4.7    1
(EJ787964) 1093017362202 Global-Ocean-Sampling_GS-30-02-01-1...    46   4.7    1
(EJ786872) 1093017355002 Global-Ocean-Sampling_GS-30-02-01-1...    46   4.7    1
(EJ730625) 1092960110696 Global-Ocean-Sampling_GS-30-02-01-1...    46   4.7    1
(EJ688029) 1092955209346 Global-Ocean-Sampling_GS-30-02-01-1...    46   4.7    1
(EJ168994) 1092344076702 Global-Ocean-Sampling_GS-27-01-01-1...    46   4.7    1
(EJ157266) 1092344034258 Global-Ocean-Sampling_GS-27-01-01-1...    46   4.7    1
(DX477946) Cpl20208 Papaya Genomic DNA BAC Library Carica pa...    46   4.7    1
(CT452547) Sus scrofa genomic clone CH242-417E15, genomic su...    46   4.7    1
(DT576055) she01-27ms4-g08 She01 Saruma henryi cDNA clone sh...    46   4.7    1
(BP509953) Hydra magnipapillata cDNA, clone:hmp_05094.             46   4.7    1
(FK523815) 454GmaGlobSeed258447 Soybean Seeds Containing Glo...    46   4.7    1
(EJ284632) 1095368012375 Global-Ocean-Sampling_GS-27-01-01-1...    32   5.0    3
(EK334280) 1095467034734 Global-Ocean-Sampling_GS-31-01-01-1...    40   5.3    2
(EK255140) 1095462006796 Global-Ocean-Sampling_GS-31-01-01-1...    40   5.7    2
(AC178024) Strongylocentrotus purpuratus clone R3-3055H14, W...    34   8.7    2
(EJ760272) 1092963122843 Global-Ocean-Sampling_GS-30-02-01-1...    40   9.0    2
(AF296836) Arabidopsis thaliana BAC F28I16.                        44   9.3    6

>(BJ435492) Dictyostelium discoideum cDNA clone:ddv27e09, 3' end,
           single read.
          Length = 592

 Score = 1160 bits (585), Expect = 0.0
 Identities = 587/588 (99%)
 Strand = Plus / Plus


Query: 113 cgtcaattacaacttgagttgaatcatttaaaatatcatcaactaattgattatataatt 172
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5   cgtcaattacaacttgagttgaatnatttaaaatatcatcaactaattgattatataatt 64


Query: 173 cattaatatcaatgaaatcaccaatagcagaaggaattgaagaggataaagtatttaaga 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cattaatatcaatgaaatcaccaatagcagaaggaattgaagaggataaagtatttaaga 124


Query: 233 gtggtttagttaatggattaataattttacaaagagttggtttaaccatttcacgtacaa 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtggtttagttaatggattaataattttacaaagagttggtttaaccatttcacgtacaa 184


Query: 293 caaatttcaattgcatatttgtgcctaaaatgacatcatgttgatattttgaatgagttt 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 caaatttcaattgcatatttgtgcctaaaatgacatcatgttgatattttgaatgagttt 244


Query: 353 gatttttagcagaagccacatctacttgatcttgagtaacagttttctcaagagtgtaag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gatttttagcagaagccacatctacttgatcttgagtaacagttttctcaagagtgtaag 304


Query: 413 caccatcataggccatattattaatagattctttaatatcgtaacagataaagtaggagg 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 caccatcataggccatattattaatagattctttaatatcgtaacagataaagtaggagg 364


Query: 473 aatagtctctaaagattggtctatactcctccacaatactatacaatggtgagattttat 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aatagtctctaaagattggtctatactcctccacaatactatacaatggtgagattttat 424


Query: 533 ctttggcagggtacatagtccaataggagtttggataacttctataggaggagaaagact 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctttggcagggtacatagtccaataggagtttggataacttctataggaggagaaagact 484


Query: 593 cggttgagccattgccattgtatgcatttgttttctcattccaaattttgagagattcat 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cggttgagccattgccattgtatgcatttgttttctcattccaaattttgagagattcat 544


Query: 653 caaacccattctcaattggagttctaatttcaccaatgattttcttga 700
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caaacccattctcaattggagttctaatttcaccaatgattttcttga 592

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,910,185,823
Number of extensions: 113477159
Number of successful extensions: 8925788
Number of sequences better than 10.0: 60
Length of query: 1813
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1789
Effective length of database: 97,308,875,965
Effective search space: 174085579101385
Effective search space used: 174085579101385
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U15064-1 (Contig-U15064-1Q) /CSM_Contig/Contig-U15064-1Q.Seq.d
         (1813 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55G75) RecName: Full=PH domain-containing protein DDB_G0267786;     983   0.0
AJ851776_1(AJ851776|pid:none) Gallus gallus mRNA for hypothetica...    80   3e-13
BC072979_1(BC072979|pid:none) Xenopus laevis MGC82535 protein, m...    71   1e-10
BX470066_4(BX470066|pid:none) Zebrafish DNA sequence from clone ...    60   3e-07
AK170512_1(AK170512|pid:none) Mus musculus NOD-derived CD11c +ve...    55   8e-06
AK146953_1(AK146953|pid:none) Mus musculus 17 days embryo heart ...    55   1e-05
AK051396_1(AK051396|pid:none) Mus musculus 12 days embryo spinal...    54   1e-05
AK150642_1(AK150642|pid:none) Mus musculus bone marrow macrophag...    54   2e-05
AK033735_1(AK033735|pid:none) Mus musculus adult male cecum cDNA...    54   2e-05
BC168248_1(BC168248|pid:none) Rattus norvegicus family with sequ...    53   3e-05
AK149888_1(AK149888|pid:none) Mus musculus bone marrow macrophag...    53   3e-05
(Q96TA1) RecName: Full=Niban-like protein 1; AltName: Full=Prote...    51   2e-04
AB384371_1(AB384371|pid:none) Synthetic construct DNA, clone: pF...    51   2e-04
CR382295_2(CR382295|pid:none) Zebrafish DNA sequence from clone ...    41   0.13
BX470224_4(BX470224|pid:none) Zebrafish DNA sequence from clone ...    40   0.22
BC115308_1(BC115308|pid:none) Danio rerio si:dkey-8l13.4, mRNA (...    40   0.28
AB177859_1(AB177859|pid:none) Homo sapiens mRNA for KIAA0638 spl...    40   0.28
BC013031_1(BC013031|pid:none) Homo sapiens pleckstrin homology-l...    40   0.28
BC146071_1(BC146071|pid:none) Bos taurus SWAP-70 protein, mRNA (...    40   0.28
AK339897_1(AK339897|pid:none) Acyrthosiphon pisum ACYPI002155 mR...    40   0.28
AX405898_1(AX405898|pid:none) Sequence 313 from Patent WO0222660.      40   0.28
AK074070_1(AK074070|pid:none) Homo sapiens mRNA for FLJ00141 pro...    40   0.28
BX005395_4(BX005395|pid:none) Zebrafish DNA sequence from clone ...    40   0.28
AK339901_1(AK339901|pid:none) Acyrthosiphon pisum ACYPI002155 mR...    40   0.28
AK074918_1(AK074918|pid:none) Homo sapiens cDNA FLJ90437 fis, cl...    40   0.28
S37032(S37032;S43437) gene LL5 protein - rat  &X74226_1(X74226|p...    40   0.37
(Q6PDH0) RecName: Full=Pleckstrin homology-like domain family B ...    40   0.37
AK052352_1(AK052352|pid:none) Mus musculus 13 days embryo heart ...    40   0.37
AK122336_1(AK122336|pid:none) Mus musculus mRNA for mKIAA0638 pr...    40   0.37
(Q63312) RecName: Full=Pleckstrin homology-like domain family B ...    40   0.37
AK096859_1(AK096859|pid:none) Homo sapiens cDNA FLJ39540 fis, cl...    39   0.48
(Q9UH65) RecName: Full=Switch-associated protein 70;          Sh...    39   0.48
CU179680_39(CU179680|pid:none) Mycoplasma agalactiae PG2 chromos...    39   0.48
AK172990_1(AK172990|pid:none) Mus musculus mRNA for mKIAA0640 pr...    39   0.48
AK304104_1(AK304104|pid:none) Homo sapiens cDNA FLJ61538 complet...    39   0.48
AB383933_1(AB383933|pid:none) Synthetic construct DNA, clone: pF...    39   0.48
AM910991_454(AM910991|pid:none) Plasmodium knowlesi strain H chr...    39   0.63
AJ719905_1(AJ719905|pid:none) Gallus gallus partial mRNA for hyp...    39   0.63
AY739272_1(AY739272|pid:none) Dunaliella salina ribulose-1,5-bis...    37   1.8
AP009049_1514(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    37   2.4
(Q14789) RecName: Full=Golgin subfamily B member 1; AltName: Ful...    37   3.1
BC076776_1(BC076776|pid:none) Xenopus laevis pleckstrin homology...    37   3.1
CP001047_351(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    37   3.1
AB024533_1(AB024533|pid:none) Lactococcus garvieae SA9H10L gene,...    37   3.1
BC047918_1(BC047918|pid:none) Homo sapiens Rho GTPase activating...    37   3.1
(Q8N264) RecName: Full=Rho GTPase-activating protein 24; AltName...    37   3.1
AK091196_1(AK091196|pid:none) Homo sapiens cDNA FLJ33877 fis, cl...    37   3.1
AB371588_1(AB371588|pid:none) Homo sapiens GOLGB1 mRNA for golgi...    37   3.1
D25542_1(D25542|pid:none) Homo sapiens mRNA for golgi antigen gc...    37   3.1
A56539(A56539;S37536) giantin - human  &X75304_1(X75304|pid:none)      37   3.1
AK130576_1(AK130576|pid:none) Homo sapiens cDNA FLJ27066 fis, cl...    37   3.1
AJ308993_1(AJ308993|pid:none) Cyprinus carpio partial mRNA for a...    36   4.1
(Q7SYB5) RecName: Full=Differentially expressed in FDCP 6 homolo...    36   4.1
EU877952_1(EU877952|pid:none) Priasilpha obscura mitochondrion, ...    36   4.1
CP001330_53(CP001330|pid:none) Micromonas sp. RCC299 chromosome ...    36   5.3
(Q5U2Z7) RecName: Full=Rho GTPase-activating protein 24; AltName...    36   5.3
AJ720581_1(AJ720581|pid:none) Gallus gallus mRNA for hypothetica...    36   5.3
AL009126_1313(AL009126|pid:none) Bacillus subtilis subsp. subtil...    35   6.9
(P16154) RecName: Full=Toxin A;  &AX036226_1(AX036226|pid:none) ...    35   6.9
AK290396_1(AK290396|pid:none) Homo sapiens cDNA FLJ78435 complet...    35   6.9
(P54334) RecName: Full=Phage-like element PBSX protein xkdO;  &F...    35   6.9
AB118104_1(AB118104|pid:none) Entamoeba histolytica gene for hyp...    35   6.9
FM992695_157(FM992695|pid:none) Candida dubliniensis CD36 chromo...    35   6.9
D29642_1(D29642|pid:none) Homo sapiens KIAA0053 mRNA, partial cds.     35   6.9
AK297056_1(AK297056|pid:none) Homo sapiens cDNA FLJ51694 complet...    35   6.9
AB383728_1(AB383728|pid:none) Synthetic construct DNA, clone: pF...    35   6.9
A37052(A37052;A60991;S21897;S22437;S08638) toxin A - Clostridium...    35   6.9
AK298669_1(AK298669|pid:none) Homo sapiens cDNA FLJ61332 complet...    35   6.9
AM180355_680(AM180355|pid:none) Clostridium difficile 630 comple...    35   6.9
(Q8BL80) RecName: Full=Rho GTPase-activating protein 22; AltName...    35   6.9
AK303591_1(AK303591|pid:none) Homo sapiens cDNA FLJ59112 complet...    35   6.9
FJ170104_1(FJ170104|pid:none) Hemibarbus mylodon apolipoprotein ...    35   6.9
CP000498_279(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    35   9.0
(Q7Z5H3) RecName: Full=Rho GTPase-activating protein 22; AltName...    35   9.0
AB385228_1(AB385228|pid:none) Synthetic construct DNA, clone: pF...    35   9.0
BC157669_1(BC157669|pid:none) Xenopus tropicalis hypothetical pr...    35   9.0
AK293579_1(AK293579|pid:none) Homo sapiens cDNA FLJ56006 complet...    35   9.0
EU812516_1(EU812516|pid:none) Oplegnathus fasciatus apolipoprote...    35   9.0
BT026166_1(BT026166|pid:none) Bos taurus Rho GTPase activating p...    35   9.0
CP001348_2634(CP001348|pid:none) Clostridium cellulolyticum H10,...    35   9.0
BT050178_1(BT050178|pid:none) Salmo salar clone ssal-eve-519-310...    35   9.0
CP000903_591(CP000903|pid:none) Bacillus weihenstephanensis KBAB...    35   9.1
BX572594_73(BX572594|pid:none) Rhodopseudomonas palustris CGA009...    35   9.1

>(Q55G75) RecName: Full=PH domain-containing protein DDB_G0267786;
          Length = 528

 Score =  983 bits (2541), Expect = 0.0
 Identities = 488/527 (92%), Positives = 488/527 (92%)
 Frame = -3

Query: 1685 DAQIKNEIVELTKAMLETFTKEYIKAYTXXXXXXXXXXXXXIPSPYLLEPRPRDHDKSDV 1506
            DAQIKNEIVELTKAMLETFTKEYIKAYT             IPSPYLLEPRPRDHDKSDV
Sbjct: 2    DAQIKNEIVELTKAMLETFTKEYIKAYTIQITKKAIKDAKAIPSPYLLEPRPRDHDKSDV 61

Query: 1505 FXGYLVKLGAIRKNWLKRHFVVRYDYSIDYFVDDKHTNKKGTINLCGYSVNDDPNKSGLD 1326
            F GYLVKLGAIRKNWLKRHFVVRYDYSIDYFVDDKHTNKKGTINLCGYSVNDDPNKSGLD
Sbjct: 62   FSGYLVKLGAIRKNWLKRHFVVRYDYSIDYFVDDKHTNKKGTINLCGYSVNDDPNKSGLD 121

Query: 1325 RILKIAEKMGVDTSSIPKPAQLPPFTIELYHYSRRCYYIQCANXXXXXXXXXXXKTCCRR 1146
            RILKIAEKMGVDTSSIPKPAQLPPFTIELYHYSRRCYYIQCAN           KTCCRR
Sbjct: 122  RILKIAEKMGVDTSSIPKPAQLPPFTIELYHYSRRCYYIQCANEEEFKEWIEIFKTCCRR 181

Query: 1145 SHGFKNKDPCHIAAFGIAVRNTRWSLGRWGWFGYGGNENQXXXXXXXXXXXXXXLGRALS 966
            SHGFKNKDPCHIAAFGIAVRNTRWSLGRWGWFGYGGNENQ              LGRALS
Sbjct: 182  SHGFKNKDPCHIAAFGIAVRNTRWSLGRWGWFGYGGNENQILSDIILDEIEYDILGRALS 241

Query: 965  KLPNAPWFIRNYLRNKMMTVIEGMVSSAVAPAWTGLSKTVEELRPTIEPRIKNQVDPIAQ 786
            KLPNAPWFIRNYLRNKMMTVIEGMVSSAVAPAWTGLSKTVEELRPTIEPRIKNQVDPIAQ
Sbjct: 242  KLPNAPWFIRNYLRNKMMTVIEGMVSSAVAPAWTGLSKTVEELRPTIEPRIKNQVDPIAQ 301

Query: 785  AQTNIINKMRESMMSQIKPAMEEHVNKHLKKIIGEIRTPIENGFDESLKIWNEKTNAYNG 606
            AQTNIINKMRESMMSQIKPAMEEHVNKHLKKIIGEIRTPIENGFDESLKIWNEKTNAYNG
Sbjct: 302  AQTNIINKMRESMMSQIKPAMEEHVNKHLKKIIGEIRTPIENGFDESLKIWNEKTNAYNG 361

Query: 605  NGSTESFSSYRSYPNSYWTMYPAKDKISPLYSIVEEYRPIFRDYSSYFICYDIKESINNM 426
            NGSTESFSSYRSYPNSYWTMYPAKDKISPLYSIVEEYRPIFRDYSSYFICYDIKESINNM
Sbjct: 362  NGSTESFSSYRSYPNSYWTMYPAKDKISPLYSIVEEYRPIFRDYSSYFICYDIKESINNM 421

Query: 425  AYDGAYTLEKTVTQDQVDVASAKNQTHSKYQHDVILGTNMQLKFVVREMVKPTLCKIINP 246
            AYDGAYTLEKTVTQDQVDVASAKNQTHSKYQHDVILGTNMQLKFVVREMVKPTLCKIINP
Sbjct: 422  AYDGAYTLEKTVTQDQVDVASAKNQTHSKYQHDVILGTNMQLKFVVREMVKPTLCKIINP 481

Query: 245  LTKPLLNTLSSSIPSAIGDFIDINELYNQLVDDILNDSTQVVIDELN 105
            LTKPLLNTLSSSIPSAIGDFIDINELYNQLVDDILNDSTQVVIDELN
Sbjct: 482  LTKPLLNTLSSSIPSAIGDFIDINELYNQLVDDILNDSTQVVIDELN 528

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,537,568,300
Number of extensions: 50733230
Number of successful extensions: 156956
Number of sequences better than 10.0: 83
Number of HSP's gapped: 156832
Number of HSP's successfully gapped: 85
Length of query: 604
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 469
Effective length of database: 614,245,399
Effective search space: 288081092131
Effective search space used: 288081092131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.89  gvh: 0.54  alm: 0.17  top: 0.67  tms: 0.07  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.43  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15064-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 2
FC-IC (SUB) 2