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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15062-1
Contig ID Contig-U15062-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15062-1 (Contig-U15062-1Q) /CSM_Contig/Contig-U15062-1Q.Seq.d
CAAATATTTAAATAAATTTAACATTATAAAAACAAAAATTAATAAAGTAA
AACTAAAAATGTCACATAATCATAATAGTAATAATAATAAAACCACTACC
ACAACAACCAATGATAGTGGGTCAGCAATAGCCAATGGGATTAATTTAGA
GAAAATATTGGCAGACGTTAAAGAATGTAATTATAATCTTGTAAATTCAA
TTACTGCAACCGAAGCAATTCAAAAAGAAAAAGAATCATTGGAAAATGAG
CTCTCAACTAAAGGTACCATTGGAGATGGAAAAAGAATTAAAAAATTACA
ATATAATATTTCATTACAAACAGAGACTCTAATGAAAACATTAATGAAAT
TAGATTCCCTCTCAATTACCGGTCATATTAAACATTCTCATAAAATTAAA
AAAGAAGTAAAAAAAGAAAAACAATTACAACAACAATTTGATGAAGATTT
AGATTTAAATACAAGTGGAGATTCAAGAAGTAGATCAGAATCAAATTCAA
CAACAAATACAAGTTCAAGTAATTTTAGTGATAGTGATAGTAGTGATAGT
AGTAGTGATAGCGATAGCAGTGAAAGTGATACTGAAGATTATATTCCAAA
ATTCTCACCTCATAAACTTAGAAAATATAGAAAACAATTGGTAAATAGAA
TTATGAGATTAATCGATTATCTTGATGTCCTTTCAAAAGAAACTATAGAA
TTGAAAAAGAAATATGAACAATCAAAAATTAATAATACTGCCGCTTATAA
TTTAAATGGTAGTAATGAAGGTATAGAAAATAATAATAATAATAACAATA
ATAATAATAATAACAATAATAATGAATTTTCAAAAAGATCTTATGGACAT
AATCAAAATCAAATACCACATCATCAACATAAAGGTGAAAGAAAACATCC
AACAATTGGTCAAAATAGAAATTCAAATAATAATACACAATCACAACAAC
GTAATAAATTTTCTGATAGATTTGCTCATCAACGTCAATCAAGTTATGAT
TATGACAGTCCATTCGAATTTAAAGAATTTAACAATCATTTAAATAATGA
TGAACTTTATCCATTTGGTGAGGAGGAAGAAAATAATTTCGATATGGATA
ATTTTGAATCACCATCATCAGCTCTAAATAGATATAGTATCAAATAGTGG
TAGAGATAACCTTCCAAGAATGTTTAGAAGATTTTAATAAATATATTTTA
ATTTTTTTTTAAATTTTCAATAGATAATAATAAAAAAAAAAAAAAAAAAA
AAAAAAAAATTATTTTAAAAATAAAAAAAAAA
Gap no gap
Contig length 1282
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4759691
End point 4758480
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 6
Link to clone list U15062
List of clone(s) 

est1=SSG568F,1,563
est2=CFI257E,6,1186
est3=SFF466E,33,1183
est4=CHD778E,48,1152
est5=SSG568Z,780,1233
est6=FC-BN17Z,791,1282
Translated Amino Acid sequence 
KYLNKFNIIKTKINKVKLKMSHNHNSNNNKTTTTTTNDSGSAIANGINLEKILADVKECN
YNLVNSITATEAIQKEKESLENELSTKGTIGDGKRIKKLQYNISLQTETLMKTLMKLDSL
SITGHIKHSHKIKKEVKKEKQLQQQFDEDLDLNTSGDSRSRSESNSTTNTSSSNFSDSDS
SDSSSDSDSSESDTEDYIPKFSPHKLRKYRKQLVNRIMRLIDYLDVLSKETIELKKKYEQ
SKINNTAAYNLNGSNEGIENNNNNNNNNNNNNNNEFSKRSYGHNQNQIPHHQHKGERKHP
TIGQNRNSNNNTQSQQRNKFSDRFAHQRQSSYDYDSPFEFKEFNNHLNNDELYPFGEEEE
NNFDMDNFESPSSALNRYSIK*w*r*psknv*kilinif*fffkfsidnnkkkkkkkkki
ilkikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qifk*i*hyknkn**sktknvt*s******nhyhnnq**wvsnsqwd*frenigrr*rm*
l*sckfnycnrsnskrkriigk*aln*ryhwrwkkn*kiti*yfitnrdsnenineirfp
lnyrsy*tfs*n*krskkrktittti**rfrfkykwrfkk*irikfnnkykfk*f*****
*******r*q*k*y*rlyskilts*t*ki*ktigk*nyeinrls*cpfkrnyriekei*t
ikn**ycrl*fkw***ryrk*****q*****q***ifkkilwt*sksnttsst*r*kkts
nnwsk*kfk**ytittt**if**icsstsikl*l*qsiri*ri*qsfk***tlsiw*ggr
k*fryg*f*itiissk*i*yqivveitfqecledfnkyiliff*ifnr***kkkkkkkkn
yfknkkk


Frame B:
KYLNKFNIIKTKINKVKLKMSHNHNSNNNKTTTTTTNDSGSAIANGINLEKILADVKECN
YNLVNSITATEAIQKEKESLENELSTKGTIGDGKRIKKLQYNISLQTETLMKTLMKLDSL
SITGHIKHSHKIKKEVKKEKQLQQQFDEDLDLNTSGDSRSRSESNSTTNTSSSNFSDSDS
SDSSSDSDSSESDTEDYIPKFSPHKLRKYRKQLVNRIMRLIDYLDVLSKETIELKKKYEQ
SKINNTAAYNLNGSNEGIENNNNNNNNNNNNNNNEFSKRSYGHNQNQIPHHQHKGERKHP
TIGQNRNSNNNTQSQQRNKFSDRFAHQRQSSYDYDSPFEFKEFNNHLNNDELYPFGEEEE
NNFDMDNFESPSSALNRYSIK*w*r*psknv*kilinif*fffkfsidnnkkkkkkkkki
ilkikkk


Frame C:
ni*inltl*kqklik*n*kchiiiiviiikplpqqpmivgqq*pmgli*rkywqtlknvi
iil*iqllqpkqfkkkknhwkmssqlkvplemekelknyniifhykqrl**kh**n*ips
qlpvilniliklkkk*kkknnynnnlmki*i*iqveiqevdqnqiqqqiqvqvilviviv
vivvviaiavkvilkiifqnshlinleniennw*iel*d*siilmsfqkkl*n*krnmnn
qkliilplii*mvvmkv*kiiiiitiiiiitiimnfqkdlmdiikikyhiinikvkeniq
qlvkieiqiiihnhnnvinflidllinvnqvmimtvhsnlknltii*immnfihlvrrkk
iisiwiilnhhhql*idivsnsgrdnlprmfrrf**iyfnfflnfq*iiikkkkkkkkkl
f*k*kk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15062-1 (Contig-U15062-1Q)
/CSM_Contig/Contig-U15062-1Q.Seq.d
         (1282 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15062-1 (Contig-U15062-1Q) /CSM_Contig/Conti...   755  0.0
Contig-U10875-1 (Contig-U10875-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13773-1 (Contig-U13773-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U12497-1 (Contig-U12497-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U16205-1 (Contig-U16205-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U14975-1 (Contig-U14975-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U14959-1 (Contig-U14959-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U12495-1 (Contig-U12495-1Q) /CSM_Contig/Conti...    38  0.033

>Contig-U15062-1 (Contig-U15062-1Q) /CSM_Contig/Contig-U15062-1Q.Seq.d
          Length = 1282

 Score =  755 bits (381), Expect = 0.0
 Identities = 399/408 (97%)
 Strand = Plus / Plus

                                                                        
Query: 824  gaattttcaaaaagatcttatggacataatcaaaatcaaataccacatcatcaacataaa 883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  gaattttcaaaaagatcttatggacataatcaaaatcaaataccacatcatcaacataaa 883

                                                                        
Query: 884  ggtgaaagaaaacatccaacaattggtcaaaatagaaattcaaataataatacacaatca 943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  ggtgaaagaaaacatccaacaattggtcaaaatagaaattcaaataataatacacaatca 943

                                                                        
Query: 944  caacaacgtaataaattttctgatagatttgctcatcaacgtcaatcaagttatgattat 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  caacaacgtaataaattttctgatagatttgctcatcaacgtcaatcaagttatgattat 1003

                                                                        
Query: 1004 gacagtccattcgaatttaaagaatttaacaatcatttaaataatgatgaactttatcca 1063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 gacagtccattcgaatttaaagaatttaacaatcatttaaataatgatgaactttatcca 1063

                                                                        
Query: 1064 tttggtgaggaggaagaaaataatttcgatatggataattttgaatcaccatcatcagct 1123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 tttggtgaggaggaagaaaataatttcgatatggataattttgaatcaccatcatcagct 1123

                                                                        
Query: 1124 ctaaatagatatagtatcaaatagtggtagagataaccttccaagaatgtttagaagatt 1183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 ctaaatagatatagtatcaaatagtggtagagataaccttccaagaatgtttagaagatt 1183

                                                            
Query: 1184 ttaataaatatattttaannnnnnnnnaaattttcaatagataataat 1231
            ||||||||||||||||||         |||||||||||||||||||||
Sbjct: 1184 ttaataaatatattttaatttttttttaaattttcaatagataataat 1231


 Score =  591 bits (298), Expect = e-168
 Identities = 298/298 (100%)
 Strand = Plus / Plus

                                                                       
Query: 93  ccactaccacaacaaccaatgatagtgggtcagcaatagccaatgggattaatttagaga 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ccactaccacaacaaccaatgatagtgggtcagcaatagccaatgggattaatttagaga 152

                                                                       
Query: 153 aaatattggcagacgttaaagaatgtaattataatcttgtaaattcaattactgcaaccg 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aaatattggcagacgttaaagaatgtaattataatcttgtaaattcaattactgcaaccg 212

                                                                       
Query: 213 aagcaattcaaaaagaaaaagaatcattggaaaatgagctctcaactaaaggtaccattg 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aagcaattcaaaaagaaaaagaatcattggaaaatgagctctcaactaaaggtaccattg 272

                                                                       
Query: 273 gagatggaaaaagaattaaaaaattacaatataatatttcattacaaacagagactctaa 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gagatggaaaaagaattaaaaaattacaatataatatttcattacaaacagagactctaa 332

                                                                     
Query: 333 tgaaaacattaatgaaattagattccctctcaattaccggtcatattaaacattctca 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgaaaacattaatgaaattagattccctctcaattaccggtcatattaaacattctca 390


 Score =  406 bits (205), Expect = e-113
 Identities = 205/205 (100%)
 Strand = Plus / Plus

                                                                       
Query: 574 aagtgatactgaagattatattccaaaattctcacctcataaacttagaaaatatagaaa 633
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aagtgatactgaagattatattccaaaattctcacctcataaacttagaaaatatagaaa 633

                                                                       
Query: 634 acaattggtaaatagaattatgagattaatcgattatcttgatgtcctttcaaaagaaac 693
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 acaattggtaaatagaattatgagattaatcgattatcttgatgtcctttcaaaagaaac 693

                                                                       
Query: 694 tatagaattgaaaaagaaatatgaacaatcaaaaattaataatactgccgcttataattt 753
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tatagaattgaaaaagaaatatgaacaatcaaaaattaataatactgccgcttataattt 753

                                    
Query: 754 aaatggtagtaatgaaggtatagaa 778
           |||||||||||||||||||||||||
Sbjct: 754 aaatggtagtaatgaaggtatagaa 778


 Score =  206 bits (104), Expect = 6e-53
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                       
Query: 422 caattacaacaacaatttgatgaagatttagatttaaatacaagtggagattcaagaagt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caattacaacaacaatttgatgaagatttagatttaaatacaagtggagattcaagaagt 481

                                                       
Query: 482 agatcagaatcaaattcaacaacaaatacaagttcaagtaattt 525
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agatcagaatcaaattcaacaacaaatacaagttcaagtaattt 525


>Contig-U10875-1 (Contig-U10875-1Q) /CSM_Contig/Contig-U10875-1Q.Seq.d
          Length = 2671

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 701  ttgaaaaagaaatatgaacaa 721
            |||||||||||||||||||||
Sbjct: 1274 ttgaaaaagaaatatgaacaa 1294


>Contig-U13773-1 (Contig-U13773-1Q) /CSM_Contig/Contig-U13773-1Q.Seq.d
          Length = 141

 Score = 40.1 bits (20), Expect = 0.008
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 710 aaatatgaacaatcaaaaat 729
           ||||||||||||||||||||
Sbjct: 26  aaatatgaacaatcaaaaat 7


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,915
Number of Sequences: 8402
Number of extensions: 37915
Number of successful extensions: 5307
Number of sequences better than 10.0: 660
length of query: 1282
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1266
effective length of database: 7,941,110
effective search space: 10053445260
effective search space used: 10053445260
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.11
Homology vs DNA 
Query= Contig-U15062-1 (Contig-U15062-1Q) /CSM_Contig/Contig-U15062-1Q.Seq.d
         (1282 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ375110) Dictyostelium discoideum cDNA clone:ddc17a16, 3' ...   622   0.0    4
(BJ398223) Dictyostelium discoideum cDNA clone:dds11d18, 3' ...   617   0.0    5
(BJ376779) Dictyostelium discoideum cDNA clone:ddc29l19, 3' ...   652   0.0    3
(BJ386949) Dictyostelium discoideum cDNA clone:dds11d18, 5' ...   593   0.0    3
(BJ361507) Dictyostelium discoideum cDNA clone:ddc17a16, 5' ...   593   0.0    2
(BJ364086) Dictyostelium discoideum cDNA clone:ddc29l19, 5' ...   593   0.0    2
(AU284863) Dictyostelium discoideum gamete cDNA clone:FC-BN1...   599   0.0    3
(C89877) Dictyostelium discoideum slug cDNA, clone SSG568.        615   0.0    2
(AU073283) Dictyostelium discoideum slug cDNA, clone SSG568.      293   8e-75  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   1e-05  17
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    36   2e-05  11
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    36   7e-05  11
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  36   2e-04  15
(AE017308) Mycoplasma mobile 163K complete genome.                 38   5e-04  21
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    34   6e-04  11
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.002  17
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    38   0.031  11
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.037  23
(AP005672) Physcomitrella patens subsp. patens chloroplast D...    34   0.045  7
(CT573272) Zebrafish DNA sequence from clone CH211-135M11 in...    52   0.053  1
(BX649383) Zebrafish DNA sequence from clone DKEY-247I12 in ...    52   0.053  1
(CR855386) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.053  1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    36   0.060  13
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.061  17
(EK355067) 1095468497927 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.075  2
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    34   0.10   13
(AR550999) Sequence 6130 from patent US 6747137.                   40   0.11   3
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    34   0.11   7
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   0.12   12
(FF325041) 280424608 Pea aphid whole body normalized full le...    36   0.13   3
(EX618288) 255402113 Pea aphid whole body normalized full le...    36   0.13   3
(FF338288) 280470392 Pea aphid whole body normalized full le...    36   0.14   3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.15   12
(AF057019) Dictyostelium discoideum interaptin (abpD) gene, ...    34   0.18   6
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   0.19   12
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    50   0.21   1
(AP005491) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.21   1
(AP004574) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.21   1
(EA703220) Sequence 82099 from patent US 7365185.                  50   0.21   1
(EA676216) Sequence 55095 from patent US 7365185.                  50   0.21   1
(DU574468) OO__Ba0062C13.r OO__Ba Oryza officinalis genomic ...    50   0.21   1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   0.28   18
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.29   12
(AC174546) Strongylocentrotus purpuratus clone R3-3112O4, WO...    36   0.34   5
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.36   16
(CU694912) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.39   6
(AC004688) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.42   9
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.44   18
(AC080190) Homo sapiens chromosome 7 clone RP11-962B9, WORKI...    38   0.46   2
(AC036125) Homo sapiens chromosome 18, clone RP11-482F20, co...    38   0.46   2
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.54   11
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   0.60   10
(AC157038) Bos taurus clone CH240-59H21, WORKING DRAFT SEQUE...    42   0.60   5
(AQ413371) RPCI-11-195M15.TV RPCI-11 Homo sapiens genomic cl...    38   0.60   2
(AQ580908) RPCI-11-465E8.TJ RPCI-11 Homo sapiens genomic clo...    38   0.61   2
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.62   13
(AF494278) Chaetosphaeridium globosum chloroplast, complete ...    34   0.63   10
(CR954185) Medicago truncatula chromosome 5 clone mth4-20m5,...    36   0.64   11
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    38   0.65   10
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   0.72   14
(AC202574) Medicago truncatula clone mth2-166n10, WORKING DR...    44   0.74   6
(EJ337408) 1092963488524 Global-Ocean-Sampling_GS-28-01-01-1...    40   0.76   3
(U88169) Caenorhabditis elegans cosmid T03F1, complete seque...    48   0.83   1
(AC219480) Bos taurus clone CH240-333E7, WORKING DRAFT SEQUE...    48   0.83   1
(AC006901) Caenorhabditis elegans clone Y74A11X, *** SEQUENC...    48   0.83   1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    36   0.84   13
(DU023342) 3215 Tomato HindIII BAC Library Solanum lycopersi...    30   0.89   4
(AY008388) Urostyla grandis micronuclear type II DNA polymer...    38   0.95   5
(EJ929028) 1093018795702 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.97   2
(EJ901179) 1093018491230 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.98   2
(AM625833) Entamoeba dispar GSS, clone dispar121e01.p1k.           36   1.0    2
(EK003864) 1093207005884 Global-Ocean-Sampling_GS-30-02-01-1...    38   1.0    2
(EU910965) Carica papaya clone 28422 subtelomeric region gen...    40   1.1    2
(AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple...    32   1.1    6
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    32   1.2    15
(AC145217) Homo sapiens BAC clone RP11-527C10 from 2, comple...    38   1.2    6
(EK073417) 1092961011947 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.4    3
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    42   1.4    12
(AL035476) Plasmodium falciparum MAL4P3.                           34   1.4    12
(AX244208) Sequence 4 from Patent WO0164747.                       38   1.4    5
(AM422018) Candidatus Phytoplasma australiense complete genome.    36   1.5    2
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    30   1.6    14
(EU586258) Schmidtea mediterranea piwi protein WI-3 mRNA, co...    42   1.7    3
(AL731700) Mouse DNA sequence from clone RP23-239G1 on chrom...    34   1.7    12
(AC186736) Glycine max clone gmp1-63m15, complete sequence.        36   1.8    9
(AC007627) Genomic Sequence For Arabidopsis thaliana Clone F...    34   1.8    8
(AF361947) Dictyostelium discoideum SgcA (sgcA) mRNA, comple...    34   1.9    4
(BH420722) BOGXB02TR BOGX Brassica oleracea genomic clone BO...    34   2.0    3
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    34   2.0    17
(AM483944) Vitis vinifera contig VV78X031273.6, whole genome...    36   2.0    4
(DE934648) Macropus eugenii DNA, BAC clone: MEB1-126N04_F, 5...    40   2.1    3
(EU795261) Uncultured bacterium HF4000_007E07 genomic sequence.    38   2.1    4
(EU795262) Uncultured bacterium HF4000_007E11 genomic sequence.    38   2.1    4
(AM437186) Vitis vinifera contig VV78X096161.24, whole genom...    36   2.1    4
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    36   2.1    11
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    30   2.2    15
(BX294436) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    42   2.2    5
(EJ367442) 1092963711023 Global-Ocean-Sampling_GS-28-01-01-1...    36   2.2    3
(AC216770) Populus trichocarpa clone POP051-A24, complete se...    38   2.2    6
(BH590871) BOHSM80TR BOHS Brassica oleracea genomic clone BO...    36   2.2    2

>(BJ375110) Dictyostelium discoideum cDNA clone:ddc17a16, 3' end,
            single read.
          Length = 704

 Score =  622 bits (314), Expect(4) = 0.0
 Identities = 314/314 (100%)
 Strand = Plus / Minus


Query: 824  gaattttcaaaaagatcttatggacataatcaaaatcaaataccacatcatcaacataaa 883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362  gaattttcaaaaagatcttatggacataatcaaaatcaaataccacatcatcaacataaa 303


Query: 884  ggtgaaagaaaacatccaacaattggtcaaaatagaaattcaaataataatacacaatca 943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  ggtgaaagaaaacatccaacaattggtcaaaatagaaattcaaataataatacacaatca 243


Query: 944  caacaacgtaataaattttctgatagatttgctcatcaacgtcaatcaagttatgattat 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242  caacaacgtaataaattttctgatagatttgctcatcaacgtcaatcaagttatgattat 183


Query: 1004 gacagtccattcgaatttaaagaatttaacaatcatttaaataatgatgaactttatcca 1063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182  gacagtccattcgaatttaaagaatttaacaatcatttaaataatgatgaactttatcca 123


Query: 1064 tttggtgaggaggaagaaaataatttcgatatggataattttgaatcaccatcatcagct 1123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122  tttggtgaggaggaagaaaataatttcgatatggataattttgaatcaccatcatcagct 63


Query: 1124 ctaaatagatatag 1137
            ||||||||||||||
Sbjct: 62   ctaaatagatatag 49

 Score =  391 bits (197), Expect(4) = 0.0
 Identities = 197/197 (100%)
 Strand = Plus / Minus


Query: 582 ctgaagattatattccaaaattctcacctcataaacttagaaaatatagaaaacaattgg 641
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ctgaagattatattccaaaattctcacctcataaacttagaaaatatagaaaacaattgg 545


Query: 642 taaatagaattatgagattaatcgattatcttgatgtcctttcaaaagaaactatagaat 701
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 taaatagaattatgagattaatcgattatcttgatgtcctttcaaaagaaactatagaat 485


Query: 702 tgaaaaagaaatatgaacaatcaaaaattaataatactgccgcttataatttaaatggta 761
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgaaaaagaaatatgaacaatcaaaaattaataatactgccgcttataatttaaatggta 425


Query: 762 gtaatgaaggtatagaa 778
           |||||||||||||||||
Sbjct: 424 gtaatgaaggtatagaa 408

 Score = 95.6 bits (48), Expect(4) = 0.0
 Identities = 48/48 (100%)
 Strand = Plus / Minus


Query: 1139 atcaaatagtggtagagataaccttccaagaatgtttagaagatttta 1186
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48   atcaaatagtggtagagataaccttccaagaatgtttagaagatttta 1

 Score = 79.8 bits (40), Expect(4) = 0.0
 Identities = 43/44 (97%)
 Strand = Plus / Minus


Query: 482 agatcagaatcaaattcaacaacaaatacaagttcaagtaattt 525
           |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 704 agatcagaatcaaattcaccaacaaatacaagttcaagtaattt 661

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,463,834,505
Number of extensions: 101161238
Number of successful extensions: 9430459
Number of sequences better than 10.0: 215
Length of query: 1282
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1258
Effective length of database: 97,308,875,965
Effective search space: 122414565963970
Effective search space used: 122414565963970
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U15062-1 (Contig-U15062-1Q) /CSM_Contig/Contig-U15062-1Q.Seq.d
         (1282 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BA000028_2268(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    35   7.6

>BA000028_2268(BA000028|pid:none) Oceanobacillus iheyensis HTE831
           DNA, complete genome.
          Length = 478

 Score = 34.7 bits (78), Expect = 7.6
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 125 AIANGINLEKI---LADVKECNYNLVNSITATEAIQKEKESLENELSTKGTIGDGKRIKK 295
           +IAN I +  +     DV +C Y L +     EAI K  E   + LST+ T+   +RI+K
Sbjct: 397 SIANAIQVHFVDGTSTDVIDCEYPLGHRFRREEAIPKILEKYAHNLSTQYTVKQSERIQK 456

Query: 296 LQYN 307
           +  N
Sbjct: 457 VTNN 460

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,108,893,833
Number of extensions: 15158674
Number of successful extensions: 40039
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40011
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 296
Effective length of database: 627,191,635
Effective search space: 185648723960
Effective search space used: 185648723960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.53  gvh: 0.35  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U15062-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0