| Contig-U15059-1 |
| Contig ID |
Contig-U15059-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1812 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
3589858 |
| End point |
3591587 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
8 |
| Number of EST |
13 |
| Link to clone list |
U15059 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 1.11 |
| Homology vs DNA |
Query= Contig-U15059-1 (Contig-U15059-1Q) /CSM_Contig/Contig-U15059-1Q.Seq.d
(1812 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ372800) Dictyostelium discoideum cDNA clone:ddc14o05, 3' ... 1219 0.0 2
(BJ430311) Dictyostelium discoideum cDNA clone:ddv6e24, 3' e... 1176 0.0 1
(BJ416329) Dictyostelium discoideum cDNA clone:ddv25f24, 5' ... 1170 0.0 2
(BJ389994) Dictyostelium discoideum cDNA clone:dds20f21, 5' ... 1126 0.0 3
(BJ359384) Dictyostelium discoideum cDNA clone:ddc14o05, 5' ... 1124 0.0 2
(BJ412055) Dictyostelium discoideum cDNA clone:ddv6e24, 5' e... 1104 0.0 2
(BJ428302) Dictyostelium discoideum cDNA clone:ddv11o07, 3' ... 1045 0.0 3
(BJ415994) Dictyostelium discoideum cDNA clone:ddv24p11, 5' ... 1023 0.0 2
(BJ402199) Dictyostelium discoideum cDNA clone:dds20f21, 3' ... 977 0.0 1
(BJ410157) Dictyostelium discoideum cDNA clone:ddv11o07, 5' ... 856 0.0 2
(BJ434626) Dictyostelium discoideum cDNA clone:ddv24p11, 3' ... 825 0.0 1
(BJ432638) Dictyostelium discoideum cDNA clone:ddv19d07, 3' ... 815 0.0 1
(BJ435025) Dictyostelium discoideum cDNA clone:ddv25f24, 3' ... 692 0.0 1
(BI500956) kx26b07.y1 Parastrongyloides trichosuri PA pAMP1 ... 86 5e-19 3
(DR118001) RTMG1_10_B12.g1_A029 Roots minus magnesium Pinus ... 54 6e-19 4
(DR161439) RTFE1_11_G01.g1_A029 Roots minus iron Pinus taeda... 54 7e-19 4
(EC821767) SME00002058 esmbsro2 Sawyeria marylandensis cDNA,... 103 5e-18 2
(DY894841) CeleSEQ14509 Cunninghamella elegans pBluescript (... 44 4e-16 6
(AU262947) Dictyostelium discoideum vegetative cDNA clone:VS... 98 1e-15 1
(BJ372314) Dictyostelium discoideum cDNA clone:ddc12h02, 3' ... 74 4e-15 4
(BJ432977) Dictyostelium discoideum cDNA clone:ddv20l09, 3' ... 74 5e-15 4
(FF081553) CPAD-aaa08d08.b2 PB2801_EST_CPAD1 Caenorhabditis ... 96 6e-15 1
(BJ399538) Dictyostelium discoideum cDNA clone:dds6m08, 3' e... 74 6e-15 4
(BJ341435) Dictyostelium discoideum cDNA clone:dda6k16, 3' e... 74 6e-15 4
(EX322689) GQ02819.B7_L06 GQ028 - Cambium / phloem scrapping... 56 1e-13 2
(EX426360) GQ03813.B7_B24 GQ038 - Stem - Active growth Picea... 56 1e-13 2
(EX344295) GQ03102.B7_F24 GQ031 - Xylem Scrapings (Normalize... 56 1e-13 2
(EX343928) GQ03102.B7.1_F24 GQ031 - Xylem Scrapings (Normali... 56 1e-13 2
(DY889170) CeleSEQ8167 Cunninghamella elegans pBluescript (E... 44 2e-13 5
(DY885287) CeleSEQ518 Cunninghamella elegans pBluescript (Ec... 44 3e-13 5
(FC692389) CAXX3189.fwd CAXX Lottia gigantea from male gonad... 68 3e-13 4
(DY889123) CeleSEQ6654 Cunninghamella elegans pBluescript (E... 44 3e-13 5
(DY886310) CeleSEQ1916 Cunninghamella elegans pBluescript (E... 44 3e-13 5
(FC763650) CBBN14059.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 68 3e-13 4
(FC722771) CBBG14892.fwd CBBG Lottia gigantea 12,15,18h embr... 68 3e-13 4
(FC798377) CBGC25385.fwd CBGC Lottia gigantea 15h 18h embryo... 68 4e-13 4
(FC790507) CBGC20389.fwd CBGC Lottia gigantea 15h 18h embryo... 68 4e-13 4
(FC702883) CAXY1651.fwd CAXY Lottia gigantea from male gonad... 68 4e-13 4
(FC708029) CAXY5003.fwd CAXY Lottia gigantea from male gonad... 68 5e-13 4
(FC695367) CAXX493.fwd CAXX Lottia gigantea from male gonad ... 68 6e-13 4
(FD768728) Zfi02b_54_H02_C017.g1 cDNA library derived from f... 56 9e-13 4
(EX332277) GQ02904.B7_G20 GQ029 - Xylem scrapings - AT NITE ... 54 2e-12 2
(BJ400850) Dictyostelium discoideum cDNA clone:dds15h06, 3' ... 74 2e-12 2
(BJ429837) Dictyostelium discoideum cDNA clone:ddv5f01, 3' e... 74 2e-12 2
(EL458365) CHTS1181.b2_I07.ab1 CHT(LMS) Jerusalem artichoke ... 68 3e-12 3
(C23707) Dictyostelium discoideum gamete cDNA, clone FC-AI05. 50 8e-12 5
(EX376540) GQ03233.B7.1_D11 GQ032 - Shoot tip (Normalized li... 54 3e-11 2
(EX376907) GQ03233.B7_D11 GQ032 - Shoot tip (Normalized libr... 54 3e-11 2
(BJ341661) Dictyostelium discoideum cDNA clone:dda7j17, 3' e... 74 6e-11 2
(EL450208) CHTM3214.b1_L11.ab1 CHT(LMS) Jerusalem artichoke ... 68 7e-11 2
(EB440405) KN6B.106D02F.060104T7 KN6B Nicotiana tabacum cDNA... 76 7e-11 2
(EL439475) CHTM1497.b1_B16.ab1 CHT(LMS) Jerusalem artichoke ... 68 8e-11 2
(CD852157) DH0ALL25ZB02ZZM1 HaDevR5 Helianthus annuus cDNA c... 68 8e-11 2
(EL454369) CHTM705.b1_B10.ab1 CHT(LMS) Jerusalem artichoke H... 68 8e-11 2
(CX301584) C08011D02SK PhyRootSw1 Citrus sinensis cDNA clone... 56 1e-10 2
(BJ428875) Dictyostelium discoideum cDNA clone:ddv1e16, 3' e... 68 1e-10 2
(EH010880) USDA-FP_183935 Lysiphlebus testaceipes adult whol... 48 1e-10 4
(DR534709) WS02744.C21_B24 SS-IL-A-FL-14 Picea sitchensis cD... 50 2e-10 3
(BQ969551) QHB38N03.yg.ab1 QH_ABCDI sunflower RHA801 Heliant... 66 2e-10 2
(EL448037) CHTM26751.b1_M16.ab1 CHT(LMS) Jerusalem artichoke... 68 3e-10 2
(EX436535) GQ04002.B7_N02 GQ040 - Shoot tip - Active growth ... 42 9e-10 4
(FC723757) CBBG1673.fwd CBBG Lottia gigantea 12,15,18h embry... 68 1e-09 2
(DY890554) CeleSEQ9596 Cunninghamella elegans pBluescript (E... 44 1e-09 4
(DW164450) CLVY2981.b1_J02.ab1 CLV(XYZ) lettuce virosa Lactu... 48 1e-09 4
(DV129720) CV03054B2E01.f1 CV03-normalized library Euphorbia... 62 4e-09 2
(DV126863) CV03046A2H08.f1 CV03-normalized library Euphorbia... 62 4e-09 2
(DV127473) CV03048A2A08.f1 CV03-normalized library Euphorbia... 62 4e-09 2
(CV431015) 54926.1 After-Cooking Darkening C Solanum tuberos... 76 5e-09 1
(BM415286) OP20358 Mixed Stage EST's from Globodera pallida,... 76 5e-09 1
(BI175851) EST516934 cSTS Solanum tuberosum cDNA clone cSTS2... 76 5e-09 1
(BG600588) EST505483 cSTS Solanum tuberosum cDNA clone cSTS2... 76 5e-09 1
(BG597830) EST496508 cSTS Solanum tuberosum cDNA clone cSTS1... 76 5e-09 1
(BG596351) EST495029 cSTS Solanum tuberosum cDNA clone cSTS1... 76 5e-09 1
(BF460057) 072D10 Mature tuber lambda ZAP Solanum tuberosum ... 76 5e-09 1
(BF459750) 064F03 Mature tuber lambda ZAP Solanum tuberosum ... 76 5e-09 1
(BU040955) PP_LEa0007N08f Peach developing fruit mesocarp Pr... 44 1e-08 3
(DV129978) CV03055B1F03.f1 CV03-normalized library Euphorbia... 60 1e-08 2
(EL382166) CFFM19544.b1_P14.ab1 CFF(LMS) safflower Carthamus... 62 2e-08 3
(EL398120) CFFM9425.b1_A06.ab1 CFF(LMS) safflower Carthamus ... 62 2e-08 3
(EF085179) Picea sitchensis clone WS0295_E11 unknown mRNA. 42 3e-08 3
(ES863859) WS027101.CR_E19 SS-IL-A-FL-14 Picea sitchensis cD... 42 4e-08 3
(DR495300) WS0297.BR_K08 SS-IB-A-FL-15 Picea sitchensis cDNA... 42 4e-08 3
(DR494188) WS0294.BR_G14 SS-IB-A-FL-15 Picea sitchensis cDNA... 42 4e-08 3
(DR494473) WS0295.BR_E11 SS-IB-A-FL-15 Picea sitchensis cDNA... 42 4e-08 3
(DR513631) WS02736.CR_H09 SS-IL-A-FL-14 Picea sitchensis cDN... 42 4e-08 3
(ES874257) WS02925.CR_I15 SS-IB-A-FL-15 Picea sitchensis cDN... 42 4e-08 3
(EX392185) GQ03321.B7_P09 GQ033 - Terminal leader (Normalize... 42 4e-08 3
(DR491966) WS02918.CR_P05 SS-IB-A-FL-15 Picea sitchensis cDN... 42 4e-08 3
(ES877246) WS02934.CR_B10 SS-IB-A-FL-15 Picea sitchensis cDN... 42 4e-08 3
(ES861695) WS02785.CR_C18 SS-IL-A-FL-14 Picea sitchensis cDN... 42 4e-08 3
(DR516693) WS02744.CR_B24 SS-IL-A-FL-14 Picea sitchensis cDN... 42 4e-08 3
(EH015573) USDA-FP_188160 Lysiphlebus testaceipes adult whol... 58 4e-08 4
(FF493886) G708P523RA10.T0 Acorn worm normalized gastrula pE... 72 5e-08 2
(FF476322) G613P6150RE9.T0 Acorn worm blastula/gastrula pCMV... 72 5e-08 2
(EE263201) B02_B02gf1m4_pDNRf_501949 Myzus persicae, line G0... 44 5e-08 4
(FF633550) G825P560RB3.T0 Acorn worm normalized gastrula pEx... 72 5e-08 2
(DY969796) CLSM2930.b1_C14.ab1 CLS(LMS) lettuce sativa Lactu... 56 6e-08 2
(ES634694) NVPAV64TR NVPA Nasonia vitripennis cDNA, mRNA seq... 72 8e-08 1
(FF634612) G825P566RH11.T0 Acorn worm normalized gastrula pE... 72 8e-08 1
(FF621781) G825P5244RH6.T0 Acorn worm normalized gastrula pE... 72 8e-08 1
>(BJ372800) Dictyostelium discoideum cDNA clone:ddc14o05, 3' end,
single read.
Length = 710
Score = 1219 bits (615), Expect(2) = 0.0
Identities = 617/618 (99%)
Strand = Plus / Minus
Query: 717 tctcacagaggaatcattggatgaaattaaagagatcctcgaagacaatgaatcattggc 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tctcacagaggaatcattggatgaaattaaagagatcctcgaagacaatgaatcattggc 651
Query: 777 aaaggatgtcctcagtgctgccaaagcatcaatgggtggtgatatcagtcaaatcgattt 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaaggatgtcctcagtgctgccaaagcatcaatgggtggtgatatcagtcaaatcgattt 591
Query: 837 agttaccgtcatgcattttgctgatcgtgtcatctccttggatgaatatcgtaccaatct 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agttaccgtcatgcattttgctgatcgtgtcatctccttggatgaatatcgtaccaatct 531
Query: 897 cactcaatacttggcaaagaagatgcaagatatcgctccaaatcttagtgcactcgttgg 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cactcaatacttggcaaagaagatgcaagatatcgctccaaatcttagtgcactcgttgg 471
Query: 957 tgatcgtatcggtgctaaattgatctcacgtgctggttctctcacttctttggctaaata 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgatcgtatcggtgctaaattgatctcacgtgctggttctctcacttctttggctaaata 411
Query: 1017 cccagcttcaaccgttcaaattcttggtgctgagaaagctctcttccgtgccatgaaagt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cccagcttcaaccgttcaaattcttggtgctgagaaagctctcttccgtgccatgaaagt 351
Query: 1077 tcgtggtaaaactccaaaatatggtatcattttcaatgcctctgccgtctcttctgaaac 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcgtggtaaaactccaaaatatggtatcattttcaatgcctctgccgtctcttctgaaac 291
Query: 1137 taaaaacaaaggtagaatcgctcgttgtctctccaataaaatttcaattgccactcgtat 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 taaaaacaaaggtagaatcgctcgttgtctctccaataaaatttcaattgccactcgtat 231
Query: 1197 cgattgtttctctgataatccaaccgctaaattcggtgttgccctcaaacaacaagttgc 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cgattgtttctctgataatccaaccgctaaattcggtgttgccctcaaacaacaagttgc 171
Query: 1257 cgatagaattaaatttttcaataatggtgtcgctccaaagagaaatttagatgtcatgaa 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 170 cgatagaattaaatttttcaataatggtgtcgctccaaagagaaatttagatgtcatnaa 111
Query: 1317 agaagttatcgaggaagt 1334
||||||||||||||||||
Sbjct: 110 agaagttatcgaggaagt 93
Score = 99.6 bits (50), Expect(2) = 0.0
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 1337 aaaaagatttcgctgaggaagaagtcaaaccagtcgttaaagaatcatcaagc 1389
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 91 aaaaagatttcgctnaggaagaagtcaaaccagtcgttaaagaatcatcaagc 39
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,883,866,660
Number of extensions: 115643955
Number of successful extensions: 9660961
Number of sequences better than 10.0: 635
Length of query: 1812
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1788
Effective length of database: 97,308,875,965
Effective search space: 173988270225420
Effective search space used: 173988270225420
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.14 |
| Homology vs Protein |
Query= Contig-U15059-1 (Contig-U15059-1Q) /CSM_Contig/Contig-U15059-1Q.Seq.d
(1812 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY950661_1(AY950661|pid:none) Physarum polycephalum Nop56p mRNA,... 447 e-124
CP000588_43(CP000588|pid:none) Ostreococcus lucimarinus CCE9901 ... 444 e-123
CR761147_1(CR761147|pid:none) Xenopus tropicalis finished cDNA, ... 443 e-122
AP008209_1480(AP008209|pid:none) Oryza sativa (japonica cultivar... 443 e-122
BT085852_1(BT085852|pid:none) Zea mays full-length cDNA clone ZM... 442 e-122
AC009894_10(AC009894|pid:none) Arabidopsis thaliana chromosome I... 439 e-121
AJ311840_1(AJ311840|pid:none) Xenopus laevis mRNA for XNop56 pro... 438 e-121
BC097676_1(BC097676|pid:none) Xenopus laevis XNop56 protein, mRN... 438 e-121
AC135505_12(AC135505|pid:none) Medicago truncatula clone mth2-24... 437 e-121
AE014297_3277(AE014297|pid:none) Drosophila melanogaster chromos... 435 e-120
BT001613_1(BT001613|pid:none) Drosophila melanogaster RE33426 fu... 435 e-120
X60437_1(X60437|pid:none) Drosophila subobscura Dnop56 gene and ... 435 e-120
BT052903_1(BT052903|pid:none) Medicago truncatula clone MTYFL_FM... 432 e-119
AJ719454_1(AJ719454|pid:none) Gallus gallus mRNA for hypothetica... 432 e-119
AB024033_24(AB024033|pid:none) Arabidopsis thaliana genomic DNA,... 432 e-119
AK226630_1(AK226630|pid:none) Arabidopsis thaliana mRNA for puta... 432 e-119
AY754572_1(AY754572|pid:none) Drosophila miranda strain MSH22 No... 428 e-118
(Q9D6Z1) RecName: Full=Nucleolar protein 56; AltName: Full=Nucle... 426 e-117
AK139924_1(AK139924|pid:none) Mus musculus 2 cells egg cDNA, RIK... 426 e-117
AK292721_1(AK292721|pid:none) Homo sapiens cDNA FLJ76962 complet... 426 e-117
(Q5RA29) RecName: Full=Nucleolar protein 56; AltName: Full=Nucle... 426 e-117
AE017345_334(AE017345|pid:none) Cryptococcus neoformans var. neo... 425 e-117
(Q3SZ63) RecName: Full=Nucleolar protein 56; AltName: Full=Nucle... 425 e-117
AK077795_1(AK077795|pid:none) Mus musculus adult male thymus cDN... 425 e-117
BC056732_1(BC056732|pid:none) Danio rerio NOP56 ribonucleoprotei... 424 e-117
AY648814_1(AY648814|pid:none) Danio rerio NOP56 mRNA, complete c... 424 e-117
(O94514) RecName: Full=Nucleolar protein 56; AltName: Full=Ribos... 422 e-116
CP001327_538(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 419 e-115
CR382130_684(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 416 e-114
BT059278_1(BT059278|pid:none) Salmo salar clone ssal-rgf-538-106... 410 e-113
BT046076_1(BT046076|pid:none) Salmo salar clone ssal-rgf-541-014... 410 e-113
CP001142_240(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 408 e-112
AM920427_1595(AM920427|pid:none) Penicillium chrysogenum Wiscons... 400 e-110
FM992695_866(FM992695|pid:none) Candida dubliniensis CD36 chromo... 399 e-109
AM270362_35(AM270362|pid:none) Aspergillus niger contig An16c010... 397 e-109
CR382139_279(CR382139|pid:none) Debaryomyces hansenii strain CBS... 396 e-108
AP007151_1100(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 395 e-108
AE016816_62(AE016816|pid:none) Ashbya gossypii (= Eremothecium g... 389 e-106
(Q12460) RecName: Full=Nucleolar protein 56; AltName: Full=Ribos... 380 e-104
CU928180_42(CU928180|pid:none) Kluyveromyces thermotolerans stra... 380 e-104
CR382124_510(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 379 e-103
CR380947_165(CR380947|pid:none) Candida glabrata strain CBS138 c... 379 e-103
BC086568_1(BC086568|pid:none) Rattus norvegicus nucleolar protei... 371 e-101
AC092212_41(AC092212|pid:none) Trypanosoma brucei chromosome 8 c... 367 e-100
AM502228_52(AM502228|pid:none) Leishmania infantum chromosome 10. 364 7e-99
FN357415_18(FN357415|pid:none) Schistosoma mansoni genome sequen... 339 2e-91
CR940347_480(CR940347|pid:none) Theileria annulata strain Ankara... 304 6e-81
BC155194_1(BC155194|pid:none) Danio rerio NOP58 ribonucleoprotei... 303 2e-80
BC061961_1(BC061961|pid:none) Danio rerio NOP58 ribonucleoprotei... 303 2e-80
BC044394_1(BC044394|pid:none) Danio rerio NOP58 ribonucleoprotei... 303 2e-80
BC151884_1(BC151884|pid:none) Danio rerio NOP58 ribonucleoprotei... 301 4e-80
CR762270_1(CR762270|pid:none) Xenopus tropicalis finished cDNA, ... 301 5e-80
AE014134_1244(AE014134|pid:none) Drosophila melanogaster chromos... 301 5e-80
BC064169_1(BC064169|pid:none) Xenopus tropicalis nucleolar prote... 301 5e-80
AJ249465_1(AJ249465|pid:none) Drosophila melanogaster mRNA for D... 301 5e-80
AB015431_1(AB015431|pid:none) Oryza sativa mRNA for SAR DNA bind... 300 1e-79
AP008209_1470(AP008209|pid:none) Oryza sativa (japonica cultivar... 300 1e-79
BC077204_1(BC077204|pid:none) Xenopus laevis MGC78950 protein, m... 300 2e-79
BC122512_1(BC122512|pid:none) Xenopus laevis MGC78950 protein, m... 300 2e-79
BC044082_1(BC044082|pid:none) Xenopus laevis similar to nucleola... 299 2e-79
BC106291_1(BC106291|pid:none) Xenopus laevis similar to nucleola... 299 2e-79
(Q9MAB3) RecName: Full=Probable nucleolar protein 5-2; AltName: ... 297 1e-78
AM910990_80(AM910990|pid:none) Plasmodium knowlesi strain H chro... 293 1e-77
AP005452_6(AP005452|pid:none) Oryza sativa Japonica Group genomi... 292 2e-77
AF007271_14(AF007271|pid:none) Arabidopsis thaliana BAC TM021B04... 291 4e-77
EU515128_1(EU515128|pid:none) Dunaliella salina MAR-binding prot... 291 7e-77
CP001574_670(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 290 2e-76
(Q9P7S7) RecName: Full=Nucleolar protein 58; &AL138854_6(AL1388... 288 3e-76
AB059832_1(AB059832|pid:none) Nicotiana tabacum MARBPF mRNA for ... 287 1e-75
AK044216_1(AK044216|pid:none) Mus musculus adult retina cDNA, RI... 285 3e-75
AF043704_1(AF043704|pid:none) Caenorhabditis elegans cosmid W01B... 285 4e-75
AK133959_1(AK133959|pid:none) Mus musculus 8 days embryo whole b... 285 4e-75
(Q55FI4) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle... 285 5e-75
AC121244_25(AC121244|pid:none) Medicago truncatula clone mth2-31... 284 9e-75
AM433343_4(AM433343|pid:none) Vitis vinifera contig VV78X083692.... 283 1e-74
BT053087_1(BT053087|pid:none) Medicago truncatula clone MTYFL_FM... 283 1e-74
AF069782_1(AF069782|pid:none) Rattus sp. unknown mRNA. 283 2e-74
BC151725_1(BC151725|pid:none) Bos taurus NOP58 ribonucleoprotein... 282 2e-74
BC009306_1(BC009306|pid:none) Homo sapiens NOP58 ribonucleoprote... 282 2e-74
CR859793_1(CR859793|pid:none) Pongo abelii mRNA; cDNA DKFZp468L1... 282 2e-74
(Q9QZ86) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle... 281 4e-74
AL117554_1(AL117554|pid:none) Homo sapiens mRNA; cDNA DKFZp564H2... 281 4e-74
T17299(T17299)hypothetical protein DKFZp564H2171.1 - human (frag... 281 4e-74
CR954208_46(CR954208|pid:none) Ostreococcus tauri strain OTTH059... 281 7e-74
CU638744_128(CU638744|pid:none) Podospora anserina genomic DNA c... 279 3e-73
(Q753I4) RecName: Full=Nucleolar protein 58; &AE016819_561(AE01... 278 6e-73
(A3LUT0) RecName: Full=Nucleolar protein 58; &CP000499_38(CP000... 276 2e-72
(A5E4V9) RecName: Full=Nucleolar protein 58; 276 2e-72
FM992693_31(FM992693|pid:none) Candida dubliniensis CD36 chromos... 276 2e-72
(Q59S06) RecName: Full=Nucleolar protein 58; 275 3e-72
AM910991_158(AM910991|pid:none) Plasmodium knowlesi strain H chr... 275 4e-72
AM920428_1468(AM920428|pid:none) Penicillium chrysogenum Wiscons... 275 5e-72
(Q1E1Q5) RecName: Full=Nucleolar protein 58; 274 7e-72
(Q6BIX6) RecName: Full=Nucleolar protein 58; &CR382139_303(CR38... 274 7e-72
(Q4WYK9) RecName: Full=Nucleolar protein 58; 274 9e-72
FN357418_41(FN357418|pid:none) Schistosoma mansoni genome sequen... 274 9e-72
(A1D688) RecName: Full=Nucleolar protein 58; 273 2e-71
(A7TIF5) RecName: Full=Nucleolar protein 58; 273 2e-71
(Q12499) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle... 272 3e-71
FN392322_280(FN392322|pid:none) Pichia pastoris GS115 chromosome... 272 3e-71
(A6ZPE5) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle... 272 3e-71
CT005254_144(CT005254|pid:none) Leishmania major strain Friedlin... 271 4e-71
CU928180_634(CU928180|pid:none) Kluyveromyces thermotolerans str... 271 4e-71
(A2QE38) RecName: Full=Nucleolar protein 58; &AM270022_76(AM270... 270 1e-70
FN314949_1(FN314949|pid:none) Schistosoma japonicum isolate Anhu... 270 1e-70
(Q6CKR8) RecName: Full=Nucleolar protein 58; &CR382126_375(CR38... 269 2e-70
(Q8X066) RecName: Full=Nucleolar protein 58; &AL669992_6(AL6699... 268 5e-70
(A6RMY5) RecName: Full=Nucleolar protein 58; 266 2e-69
AF053232_1(AF053232|pid:none) Mus musculus SIK similar protein m... 262 3e-68
CP000881_127(CP000881|pid:none) Hemiselmis andersenii chromosome... 260 1e-67
AK023975_1(AK023975|pid:none) Homo sapiens cDNA FLJ13913 fis, cl... 258 5e-67
AY950659_1(AY950659|pid:none) Euglena gracilis Nop58p mRNA, part... 258 7e-67
AY365418_6(AY365418|pid:none) Epichloe festucae strain 1035.30 c... 258 7e-67
AC149637_27(AC149637|pid:none) Medicago truncatula clone mth2-18... 250 1e-64
FN314948_1(FN314948|pid:none) Schistosoma japonicum isolate Anhu... 246 2e-63
AL590451_161(AL590451|pid:none) chromosome IX of strain GB-M1 of... 240 1e-61
AF083031_125(AF083031|pid:none) Guillardia theta nucleomorph chr... 234 8e-60
AL590444_81(AL590444|pid:none) chromosome IV of strain GB-M1 of ... 233 2e-59
(O04656) RecName: Full=Putative nucleolar protein 5-3; AltName: ... 227 1e-57
BC090915_1(BC090915|pid:none) Danio rerio NOP56 ribonucleoprotei... 218 4e-55
AY051644_1(AY051644|pid:none) Drosophila melanogaster GM14238 fu... 212 3e-53
AJ010592_34(AJ010592|pid:none) Guillardia theta DNA for complete... 205 4e-51
AE006641_852(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 197 8e-49
AF201092_1(AF201092|pid:none) Sulfolobus acidocaldarius NOP56 ho... 196 2e-48
CP001399_1228(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 195 5e-48
CP001400_1150(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 194 9e-48
FN319935_1(FN319935|pid:none) Schistosoma japonicum isolate Anhu... 191 6e-47
B72528(B72528)probable nucleolar protein NOP5 APE2199 - Aeropyru... 189 3e-46
CP000575_1234(CP000575|pid:none) Staphylothermus marinus F1, com... 187 1e-45
CP000816_70(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, com... 186 2e-45
CP001014_1686(CP001014|pid:none) Thermoproteus neutrophilus V24S... 185 5e-45
AE009439_559(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 185 5e-45
CP000505_375(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 184 7e-45
CP000561_1091(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 183 2e-44
CP000855_1305(CP000855|pid:none) Thermococcus onnurineus NA1, co... 182 3e-44
GM016257_360(GM016257|pid:none) Sequence 1087 from Patent EP1923... 181 1e-43
AP006878_185(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 181 1e-43
CP000660_1323(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 177 9e-43
CP001398_465(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 176 2e-42
CP000742_1447(CP000742|pid:none) Methanococcus vannielii SB, com... 173 2e-41
BX950229_596(BX950229|pid:none) Methanococcus maripaludis strain... 171 1e-40
CP000609_999(CP000609|pid:none) Methanococcus maripaludis C5, co... 169 4e-40
CP000852_1257(CP000852|pid:none) Caldivirga maquilingensis IC-16... 167 9e-40
CP000745_1603(CP000745|pid:none) Methanococcus maripaludis C7, c... 166 2e-39
CP000866_1387(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 162 5e-38
AE000666_1194(AE000666|pid:none) Methanothermobacter thermautotr... 152 5e-35
CP000678_1046(CP000678|pid:none) Methanobrevibacter smithii ATCC... 149 3e-34
AY553910_1(AY553910|pid:none) Brassica juncea putative preRNA pr... 144 1e-32
AE017199_335(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, co... 140 2e-31
CP000102_1373(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 138 6e-31
AE008384_1593(AE008384|pid:none) Methanosarcina mazei strain Goe... 134 8e-30
AB277191_1(AB277191|pid:none) Ipomoea nil PnD21-22 mRNA for simi... 126 3e-27
CP000300_1443(CP000300|pid:none) Methanococcoides burtonii DSM 6... 126 3e-27
AY811915_1(AY811915|pid:none) Schistosoma japonicum SJCHGC08870 ... 124 1e-26
AY007719_1(AY007719|pid:none) Bos taurus hypothetical protein 11... 123 2e-26
FN357551_9(FN357551|pid:none) Schistosoma mansoni genome sequenc... 111 8e-23
(Q5U5C5) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp... 110 1e-22
FN357430_17(FN357430|pid:none) Schistosoma mansoni genome sequen... 110 2e-22
FN318102_1(FN318102|pid:none) Schistosoma japonicum isolate Anhu... 109 3e-22
CP000584_134(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 108 5e-22
AM114193_2828(AM114193|pid:none) Uncultured methanogenic archaeo... 108 6e-22
CR954202_367(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 104 1e-20
(Q6NVP6) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp... 104 1e-20
AL833804_6(AL833804|pid:none) Mouse DNA sequence from clone RP23... 102 4e-20
(Q8WWY3) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp... 102 5e-20
AB463201_1(AB463201|pid:none) Synthetic construct DNA, clone: pF... 102 5e-20
AK301709_1(AK301709|pid:none) Homo sapiens cDNA FLJ59251 complet... 102 5e-20
AE017261_668(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 102 5e-20
AY040822_1(AY040822|pid:none) Homo sapiens U4/U6 snRNP-associate... 102 6e-20
AK005294_1(AK005294|pid:none) Mus musculus adult male cerebellum... 101 8e-20
AK033283_1(AK033283|pid:none) Mus musculus 15 days embryo male t... 101 8e-20
AF308303_1(AF308303|pid:none) Homo sapiens serologically defined... 100 1e-19
(Q7SXM7) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp... 100 1e-19
AK033190_1(AK033190|pid:none) Mus musculus 15 days embryo male t... 100 3e-19
AK066109_1(AK066109|pid:none) Oryza sativa Japonica Group cDNA c... 99 4e-19
BT036493_1(BT036493|pid:none) Zea mays full-length cDNA clone ZM... 99 5e-19
AC150800_1(AC150800|pid:none) Medicago truncatula chromosome 7 c... 99 5e-19
BT054842_1(BT054842|pid:none) Zea mays full-length cDNA clone ZM... 99 7e-19
CP001575_252(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 97 2e-18
BC061461_1(BC061461|pid:none) Mus musculus PRP31 pre-mRNA proces... 95 7e-18
CP000780_510(CP000780|pid:none) Candidatus Methanoregula boonei ... 94 2e-17
CR936257_1027(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 94 2e-17
AP004010_10(AP004010|pid:none) Oryza sativa Japonica Group genom... 93 4e-17
AM180088_1636(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 93 4e-17
AY596297_759(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 92 5e-17
AE014296_2640(AE014296|pid:none) Drosophila melanogaster chromos... 92 6e-17
BA000011_357(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 91 1e-16
AE000782_2062(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 90 2e-16
AP007169_339(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 90 3e-16
AM920431_493(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 87 2e-15
CP001365_1032(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 87 2e-15
AL035475_27(AL035475|pid:none) Plasmodium falciparum MAL4P2. 85 1e-14
AE004437_907(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 84 2e-14
AC006708_15(AC006708|pid:none) Caenorhabditis elegans cosmid Y11... 82 8e-14
CU928170_505(CU928170|pid:none) Kluyveromyces thermotolerans str... 80 2e-13
CR382124_618(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 79 7e-13
CP000499_437(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 78 9e-13
CP000254_2189(CP000254|pid:none) Methanospirillum hungatei JF-1,... 75 8e-12
CR382128_529(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 74 2e-11
(P49704) RecName: Full=Pre-mRNA-processing factor 31; &S64386(S... 74 2e-11
AF223352_1(AF223352|pid:none) Drosophila melanogaster nucleolar ... 67 2e-09
FM992689_597(FM992689|pid:none) Candida dubliniensis CD36 chromo... 67 2e-09
A72528(A72528)hypothetical protein APE2198 - Aeropyrum pernix (s... 67 2e-09
CR382135_334(CR382135|pid:none) Debaryomyces hansenii strain CBS... 65 6e-09
AB236818_1(AB236818|pid:none) Trifolium pratense RNA for putativ... 64 1e-08
CU928175_514(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 63 4e-08
AX972834_1(AX972834|pid:none) Sequence 3637 from Patent EP1104808. 61 1e-07
AY737058_1(AY737058|pid:none) Oreochromis mossambicus clone Ov06... 60 3e-07
CR380953_123(CR380953|pid:none) Candida glabrata strain CBS138 c... 60 3e-07
AK044457_1(AK044457|pid:none) Mus musculus adult retina cDNA, RI... 57 2e-06
CP001164_5189(CP001164|pid:none) Escherichia coli O157:H7 str. E... 44 0.025
AE005174_5218(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 44 0.025
DQ158857_102(DQ158857|pid:none) Bigelowiella natans nucleomorph ... 42 0.057
AM502234_172(AM502234|pid:none) Leishmania infantum chromosome 16. 41 0.13
AE017125_21(AE017125|pid:none) Helicobacter hepaticus ATCC 51449... 40 0.22
CT005255_171(CT005255|pid:none) Leishmania major strain Friedlin... 40 0.28
CR382134_341(CR382134|pid:none) Debaryomyces hansenii strain CBS... 39 0.63
BA000028_1722(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 38 1.1
CP000975_1618(CP000975|pid:none) Methylacidiphilum infernorum V4... 38 1.4
S56478(S56478;H65237) hypothetical 71.1K protein (pyrL-argI inte... 37 1.8
AE001437_436(AE001437|pid:none) Clostridium acetobutylicum ATCC ... 37 1.8
(P39336) RecName: Full=Uncharacterized protein yjgL; &AP009048_... 37 1.8
BX293980_183(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 37 3.1
CP000300_1895(CP000300|pid:none) Methanococcoides burtonii DSM 6... 36 4.1
CR380957_106(CR380957|pid:none) Candida glabrata strain CBS138 c... 36 4.1
FJ464411_1(FJ464411|pid:none) Canis lupus familiaris BRCA2 (BRCA... 36 5.3
BC080957_1(BC080957|pid:none) Xenopus tropicalis cDNA clone MGC:... 36 5.3
(Q58120) RecName: Full=Putative RNA methyltransferase MJ0710; ... 36 5.3
FJ464398_1(FJ464398|pid:none) Canis lupus familiaris BRCA2 (BRCA... 36 5.3
CP000932_660(CP000932|pid:none) Campylobacter lari RM2100, compl... 36 5.3
FJ464409_1(FJ464409|pid:none) Canis lupus familiaris BRCA2 (BRCA... 36 5.3
CR760232_1(CR760232|pid:none) Xenopus tropicalis finished cDNA, ... 36 5.3
FJ464399_1(FJ464399|pid:none) Canis lupus familiaris BRCA2 (BRCA... 36 5.3
T42631(T42631) breast cancer tumor suppressor BRCA2 - dog (fragm... 36 5.3
FJ464408_1(FJ464408|pid:none) Canis lupus familiaris BRCA2 (BRCA... 36 5.3
AB043895_1(AB043895|pid:none) Canis lupus familiaris Brca2 mRNA,... 36 5.3
FJ464407_1(FJ464407|pid:none) Canis lupus familiaris BRCA2 (BRCA... 36 5.3
FJ464397_1(FJ464397|pid:none) Canis lupus familiaris BRCA2 (BRCA... 36 5.3
BC064243_1(BC064243|pid:none) Xenopus tropicalis hypothetical pr... 36 5.3
FJ464401_1(FJ464401|pid:none) Canis lupus familiaris BRCA2 (BRCA... 36 5.3
(Q81GY5) RecName: Full=Foldase protein prsA 1; EC=5.2.1... 35 6.9
AC022288_1(AC022288|pid:none) Arabidopsis thaliana chromosome 1 ... 35 6.9
CP001104_921(CP001104|pid:none) Eubacterium eligens ATCC 27750, ... 35 6.9
AL844505_39(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 35 6.9
FB843335_1(FB843335|pid:none) Sequence 62608 from Patent WO20080... 35 6.9
BC134145_1(BC134145|pid:none) Danio rerio polymerase I and trans... 35 6.9
EF633994_1(EF633994|pid:none) Danio rerio polymerase I and trans... 35 6.9
CP000753_1959(CP000753|pid:none) Shewanella baltica OS185, compl... 35 9.0
(P13535) RecName: Full=Myosin-8; AltName: Full=Myosin heavy chai... 35 9.1
CP000269_809(CP000269|pid:none) Janthinobacterium sp. Marseille,... 35 9.1
(Q0S2G8) RecName: Full=Glutamyl-tRNA synthetase; EC=6.1... 35 9.1
CP000152_1012(CP000152|pid:none) Burkholderia sp. 383 chromosome... 35 9.1
AF083741_1(AF083741|pid:none) Arabidopsis thaliana clone sps462 ... 35 9.1
BX908798_1006(BX908798|pid:none) Parachlamydia-related symbiont ... 35 9.1
CU928180_202(CU928180|pid:none) Kluyveromyces thermotolerans str... 35 9.1
I38055(I38055;JH0154;S12459;S09332;A30220;S49478) myosin heavy c... 35 9.1
>AY950661_1(AY950661|pid:none) Physarum polycephalum Nop56p mRNA,
partial cds.
Length = 419
Score = 447 bits (1150), Expect = e-124
Identities = 222/395 (56%), Positives = 305/395 (77%), Gaps = 2/395 (0%)
Frame = +1
Query: 139 TDQVQKSMQDFSKFSKVCKMVGSLPFTSAENALENINSISEGILTESLHDFLKQTFSKKT 318
TD++Q +++ F FSK+ K+V +PFTSAE+ALENIN++SEGIL+E L FL+ K
Sbjct: 7 TDEIQVAIKTFPLFSKMVKLVSFIPFTSAESALENINAVSEGILSEFLRTFLESHLPSKN 66
Query: 319 EG-VVLGVCDNKLSASIGDELKISCLSNSHTSEIIRCIRNHISEFTKLKSADLLKAQLGL 495
G + +GV ++KL +SI +E ++C+ E++R IR H+S+FT+L DL KAQLGL
Sbjct: 67 RGKITVGVSEDKLGSSIQEEFGVTCVRTGPVQELLRGIRQHLSKFTELSEGDLEKAQLGL 126
Query: 496 GHSYSRSKVKFNVHKVDNMIIQSICLLEQLDKDLNTFFMRLREWYSWHFPELLKIIESQV 675
GH YSR+KVKFN+HK DNM+IQSI LL+QLDKD+NTF MR+REWYSWHFPEL+KI+
Sbjct: 127 GHRYSRAKVKFNIHKADNMVIQSIALLDQLDKDVNTFSMRVREWYSWHFPELVKIVGDNY 186
Query: 676 HFAKLAKLIQNKKNLTEESLDEIKEILEDNESLAKDVLSAAKASMGGDISQIDLVTVMHF 855
FA+L KLI+NK N++E+ +D+I EI+ D + A++V SAA+ SMG DIS+IDL ++ F
Sbjct: 187 MFARLVKLIKNKTNISEDIIDQITEIVADADK-AQEVYSAARTSMGTDISEIDLKSIEDF 245
Query: 856 ADRVISLDEYRTNLTQYLAKKMQDIAPNLSALVGDRIGAKLISRAGSLTSLAKYPASTVQ 1035
D+VI+L EYR L QYL KKM D APNLSAL+G+ IGA+LI+RAGSLT+LAK+PASTVQ
Sbjct: 246 TDKVINLTEYRLRLQQYLLKKMGDCAPNLSALMGETIGARLIARAGSLTNLAKFPASTVQ 305
Query: 1036 ILGAEKALFRAMKVRGKTPKYGIIFNASAV-SSETKNKGRIARCLSNKISIATRIDCFSD 1212
ILGAE+ALF+A+K +G TPK+GIIF++ + + KN+GRI+R L+NK ++A+RID FS+
Sbjct: 306 ILGAERALFQALKKKGNTPKHGIIFHSGFIQKAAAKNRGRISRYLANKAALASRIDSFSE 365
Query: 1213 NPTAKFGVALKQQVADRIKFFNNGVAPKRNLDVMK 1317
PT+ FG + QV +R+ F+ GV P++N+DVM+
Sbjct: 366 TPTSIFGTKFRGQVEERMVFYEKGVKPRKNIDVMR 400
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,254,774,770
Number of extensions: 43557600
Number of successful extensions: 128302
Number of sequences better than 10.0: 256
Number of HSP's gapped: 127766
Number of HSP's successfully gapped: 257
Length of query: 604
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 469
Effective length of database: 614,245,399
Effective search space: 288081092131
Effective search space used: 288081092131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
5 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
0 |
| CF (FL, S) |
1 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |