Contig-U15056-1
Contig ID Contig-U15056-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15056-1 (Contig-U15056-1Q) /CSM_Contig/Contig-U15056-1Q.Seq.d
CTTCTGGAAAAATTCAACAATCCAGAAATATCCAACCATGAATATTGAGG
GGGATGACCAAGAATTTTATAATTTTAATGATATAAAAAAAAAAAGAAAA
TTTTCAAAAGAAGATGCAATCTATGGTGTATTTAATGATGGATGGGGAGA
TTATGAAGATGAAGAAGAATCTAAAATGACAGAGGAGGAATATTATAAAA
TGAAAAAAAGATATTCCACCCCAGTTGGTTTCGTTGCAAGTGGTATTTAT
GAACCCAATGAACATTAATTAAAAAATAAAGATGGTGAAAATATTGTCAA
CGATTATGATGACGGTTAAGAAAAAAAAAAAAAAAAAAAAAGAAAAAAAA
GAAAAGAAACAAAAGAAAAAAGAGAAAAAAAAAAAAAAAGAAAAGAAAAA
TAAAAAAAAGAATAAATATGGTGGTGGTGGTGGTAATAATTATGATGATA
GTGATAATGATAAATCAATTGAAGATAAACCAGTTGGTGGTATTGGTGCA
CTTCTGGAAAAATTCAACAATCCAGAAATATCCAACCATGAATATTGAGG
GGGATGACCAAGAATTTTATAATTTTAATGATATAAAAAAAAAAAGAAAA
TTTTCAAAAGAAGATGCAATCTATGGTGTATTTAATGATGGATGGGGAGA
TTATGAAGATGAAGAAGAATCTAAAATGACAGAGGAGGAATATTATAAAA
TGAAAAAAAGATATTCCACCCCAGTTGGTTTCGTTGCAAGTGGTATTTAT
GAACCCAATGAACATTAATTAAAAAATAAAGATGGTGAAAATATTGTCAA
CGATTATGATGACGGTTAAGAAAAAAAAAAAAAAAAAAAAAGAAAAAAAA
GAAAAGAAACAAAAGAAAAAAGAGAAAAAAAAAAAAAAAGAAAAGAAAAA
TAAAAAAAAGAATAAATATGGTGGTGGTGGTGGTAATAATTATGATGATA
GTGATAATGATAAATCAATTGAAGATAAACCAGTTGGTGGTATTGGTGCA
GCTTTATTATCAAAAATGGGTTATAAAGGTACAGGTGGTTTAGGTCGTGA
TGGTGGCGGTATGGTTGAACCAATTAAAGTACAAGTTAGACCTAAAAATG
CTGGTTTAGCATCTGTTACAGAATTAAATGTTAATAGTAGTGATGATAGC
GACGATAGTGATCAAAGTGAAGGTGATACTGATAGTGATAATGAAAATAA
GAGATCATTAGGTTGGAAAAAGAAAGAACCAAAATTAAAATATGATTTTG
ATGAACATTTAGAATCAACAACTACAACAACTTTTAAAAAGAAAACTACC
ACAACAACAGCAACAACAACAACATCATCAACACCTCAAATTGTAATTGA
TATGCGTGGTCCAGAAGCAAGATTGTATACAGGTATGGAAGAAATCAAAC
ATCATAAACATCATCATCATCATCAACATAATAAAG

Gap no gap
Contig length 1436
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3674077
End point 3675251
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 4
Link to clone list U15056
List of clone(s)

est1=CFF891X,1,1000
est2=CFF891F,8,330
est3=SSJ283F,864,1436
est4=CFF891Z,1084,1327
Translated Amino Acid sequence
fwknstiqkyptmniegddqefynfndikkkrkfskedaiygvfndgwgdyedeeeskmt
eeeyykmkkrystpvgfvasgiyepneh*lknkdgenivndyddg*ekkkkkkrkkrket
kekrekkkkrkek*kke*iwwwww**l*******in*r*tswwywctsgkiqqsrniqp*
ilrgmtknfiilmi*kkkenfqkkmqsmvylmmdgeimkmkknlk*qrrniik*kkdipp
qlvslqvvfmnpmnin*KIKMVKILSTIMMTVKKKKKKKKEKKEKKQKKKEKKKKKEKKN
KKKNKYGGGGGNNYDDSDNDKSIEDKPVGGIGAALLSKMGYKGTGGLGRDGGGMVEPIKV
QVRPKNAGLASVTELNVNSSDDSDDSDQSEGDTDSDNENKRSLGWKKKEPKLKYDFDEHL
ESTTTTTFKKKTTTTTATTTTSSTPQIVIDMRGPEARLYTGMEEIKHHKHHHHHQHNK


Translated Amino Acid sequence (All Frames)
Frame A:
llekfnnpeisnhey*gg*pril*f**ykkkkkifkrrcnlwci**wmgrl*r*rri*nd
rggil*nekkifhpswfrckwyl*tq*tlikk*rw*kycqrl**rlrkkkkkkkkkkkrn
krkkrkkkkkkrkikkrinmvvvvviimmiviminqlkinqlvvlvhfwknstiqkyptm
niegddqefynfndikkkrkfskedaiygvfndgwgdyedeeeskmteeeyykmkkryst
pvgfvasgiyepneh*lknkdgenivndyddg*ekkkkkkrkkrketkekrekkkkrkek
*kke*iwwwww**l*******in*r*tswwywcsfiikngl*ryrwfrs*wwryg*tn*s
ts*t*kcwfsicyrikc******rr**sk*r*y*****k*eiirlekertkiki*f**tf
rinnynnf*kenyhnnsnnnniintsncn*yawsrskivyrygrnqts*tssssst**


Frame B:
fwknstiqkyptmniegddqefynfndikkkrkfskedaiygvfndgwgdyedeeeskmt
eeeyykmkkrystpvgfvasgiyepneh*lknkdgenivndyddg*ekkkkkkrkkrket
kekrekkkkrkek*kke*iwwwww**l*******in*r*tswwywctsgkiqqsrniqp*
ilrgmtknfiilmi*kkkenfqkkmqsmvylmmdgeimkmkknlk*qrrniik*kkdipp
qlvslqvvfmnpmnin*KIKMVKILSTIMMTVKKKKKKKKEKKEKKQKKKEKKKKKEKKN
KKKNKYGGGGGNNYDDSDNDKSIEDKPVGGIGAALLSKMGYKGTGGLGRDGGGMVEPIKV
QVRPKNAGLASVTELNVNSSDDSDDSDQSEGDTDSDNENKRSLGWKKKEPKLKYDFDEHL
ESTTTTTFKKKTTTTTATTTTSSTPQIVIDMRGPEARLYTGMEEIKHHKHHHHHQHNK


Frame C:
sgkiqqsrniqp*ilrgmtknfiilmi*kkkenfqkkmqsmvylmmdgeimkmkknlk*q
rrniik*kkdippqlvslqvvfmnpmnin*kikmvkilstimmtvkkkkkkkkekkekkq
kkkekkkkkekknkkknkygggggnnyddsdndksiedkpvggigallekfnnpeisnhe
y*gg*pril*f**ykkkkkifkrrcnlwci**wmgrl*r*rri*ndrggil*nekkifhp
swfrckwyl*tq*tlikk*rw*kycqrl**rlrkkkkkkkkkkkrnkrkkrkkkkkkrki
kkrinmvvvvviimmiviminqlkinqlvvlvqlyyqkwvikvqvv*vvmvavwlnqlky
kldlkmlv*hllqn*mlivvmiativikvkvilivimkirdh*vgkrknqn*nmilmni*
nqqlqqllkrklpqqqqqqqhhqhlkl*licvvqkqdciqvwkksniiniiiiiniik


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15056-1 (Contig-U15056-1Q)
/CSM_Contig/Contig-U15056-1Q.Seq.d
(1436 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15056-1 (Contig-U15056-1Q) /CSM_Contig/Conti... 708 0.0
Contig-U11234-1 (Contig-U11234-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U10875-1 (Contig-U10875-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U15778-1 (Contig-U15778-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11866-1 (Contig-U11866-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U06647-1 (Contig-U06647-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U15910-1 (Contig-U15910-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U15757-1 (Contig-U15757-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U15729-1 (Contig-U15729-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U15697-1 (Contig-U15697-1Q) /CSM_Contig/Conti... 40 0.009

>Contig-U15056-1 (Contig-U15056-1Q) /CSM_Contig/Contig-U15056-1Q.Seq.d
Length = 1436

Score = 708 bits (357), Expect = 0.0
Identities = 393/411 (95%)
Strand = Plus / Plus


Query: 410 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 469


Query: 470 tgaagataaaccagttggtggtattggtgcacttctggaaaaattcaacaatccagaaat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgaagataaaccagttggtggtattggtgcacttctggaaaaattcaacaatccagaaat 529


Query: 530 atccaaccatgaatattgagggggatgaccaagaattttataattttaatgatatnnnnn 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atccaaccatgaatattgagggggatgaccaagaattttataattttaatgatataaaaa 589


Query: 590 nnnnnngaaaattttcaaaagaagatgcaatctatggtgtatttaatgatggatggggag 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaaaaagaaaattttcaaaagaagatgcaatctatggtgtatttaatgatggatggggag 649


Query: 650 attatgaagatgaagaagaatctaaaatgacagaggaggaatattataaaatgnnnnnnn 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 attatgaagatgaagaagaatctaaaatgacagaggaggaatattataaaatgaaaaaaa 709


Query: 710 gatattccaccccagttggtttcgttgcaagtggtatttatgaacccaatgaacattaat 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gatattccaccccagttggtttcgttgcaagtggtatttatgaacccaatgaacattaat 769


Query: 770 taaaaaataaagatggtgaaaatattgtcaacgattatgatgacggttaag 820
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 taaaaaataaagatggtgaaaatattgtcaacgattatgatgacggttaag 820


Score = 704 bits (355), Expect = 0.0
Identities = 355/355 (100%)
Strand = Plus / Plus


Query: 910 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 969


Query: 970 tgaagataaaccagttggtggtattggtgcagctttattatcaaaaatgggttataaagg 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 tgaagataaaccagttggtggtattggtgcagctttattatcaaaaatgggttataaagg 1029


Query: 1030 tacaggtggtttaggtcgtgatggtggcggtatggttgaaccaattaaagtacaagttag 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tacaggtggtttaggtcgtgatggtggcggtatggttgaaccaattaaagtacaagttag 1089


Query: 1090 acctaaaaatgctggtttagcatctgttacagaattaaatgttaatagtagtgatgatag 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 acctaaaaatgctggtttagcatctgttacagaattaaatgttaatagtagtgatgatag 1149


Query: 1150 cgacgatagtgatcaaagtgaaggtgatactgatagtgataatgaaaataagagatcatt 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 cgacgatagtgatcaaagtgaaggtgatactgatagtgataatgaaaataagagatcatt 1209


Query: 1210 aggttggaaaaagaaagaaccaaaattaaaatatgattttgatgaacatttagaa 1264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1210 aggttggaaaaagaaagaaccaaaattaaaatatgattttgatgaacatttagaa 1264


Score = 527 bits (266), Expect = e-149
Identities = 302/320 (94%)
Strand = Plus / Plus


Query: 1 cttctggaaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttctggaaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgacca 560


Query: 61 agaattttataattttaatgatatnnnnnnnnnnngaaaattttcaaaagaagatgcaat 120
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 agaattttataattttaatgatataaaaaaaaaaagaaaattttcaaaagaagatgcaat 620


Query: 121 ctatggtgtatttaatgatggatggggagattatgaagatgaagaagaatctaaaatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatggtgtatttaatgatggatggggagattatgaagatgaagaagaatctaaaatgac 680


Query: 181 agaggaggaatattataaaatgnnnnnnngatattccaccccagttggtttcgttgcaag 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 agaggaggaatattataaaatgaaaaaaagatattccaccccagttggtttcgttgcaag 740


Query: 241 tggtatttatgaacccaatgaacattaattaaaaaataaagatggtgaaaatattgtcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtatttatgaacccaatgaacattaattaaaaaataaagatggtgaaaatattgtcaa 800


Query: 301 cgattatgatgacggttaag 320
||||||||||||||||||||
Sbjct: 801 cgattatgatgacggttaag 820


Score = 527 bits (266), Expect = e-149
Identities = 302/320 (94%)
Strand = Plus / Plus


Query: 1 cttctggaaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttctggaaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgacca 60


Query: 61 agaattttataattttaatgatatnnnnnnnnnnngaaaattttcaaaagaagatgcaat 120
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 agaattttataattttaatgatataaaaaaaaaaagaaaattttcaaaagaagatgcaat 120


Query: 121 ctatggtgtatttaatgatggatggggagattatgaagatgaagaagaatctaaaatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctatggtgtatttaatgatggatggggagattatgaagatgaagaagaatctaaaatgac 180


Query: 181 agaggaggaatattataaaatgnnnnnnngatattccaccccagttggtttcgttgcaag 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 181 agaggaggaatattataaaatgaaaaaaagatattccaccccagttggtttcgttgcaag 240


Query: 241 tggtatttatgaacccaatgaacattaattaaaaaataaagatggtgaaaatattgtcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggtatttatgaacccaatgaacattaattaaaaaataaagatggtgaaaatattgtcaa 300


Query: 301 cgattatgatgacggttaag 320
||||||||||||||||||||
Sbjct: 301 cgattatgatgacggttaag 320


Score = 527 bits (266), Expect = e-149
Identities = 302/320 (94%)
Strand = Plus / Plus


Query: 501 cttctggaaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgacca 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttctggaaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgacca 60


Query: 561 agaattttataattttaatgatatnnnnnnnnnnngaaaattttcaaaagaagatgcaat 620
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 agaattttataattttaatgatataaaaaaaaaaagaaaattttcaaaagaagatgcaat 120


Query: 621 ctatggtgtatttaatgatggatggggagattatgaagatgaagaagaatctaaaatgac 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctatggtgtatttaatgatggatggggagattatgaagatgaagaagaatctaaaatgac 180


Query: 681 agaggaggaatattataaaatgnnnnnnngatattccaccccagttggtttcgttgcaag 740
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 181 agaggaggaatattataaaatgaaaaaaagatattccaccccagttggtttcgttgcaag 240


Query: 741 tggtatttatgaacccaatgaacattaattaaaaaataaagatggtgaaaatattgtcaa 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggtatttatgaacccaatgaacattaattaaaaaataaagatggtgaaaatattgtcaa 300


Query: 801 cgattatgatgacggttaag 820
||||||||||||||||||||
Sbjct: 301 cgattatgatgacggttaag 320


Score = 180 bits (91), Expect = 4e-45
Identities = 91/91 (100%)
Strand = Plus / Plus


Query: 410 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 969


Query: 470 tgaagataaaccagttggtggtattggtgca 500
|||||||||||||||||||||||||||||||
Sbjct: 970 tgaagataaaccagttggtggtattggtgca 1000


Score = 180 bits (91), Expect = 4e-45
Identities = 91/91 (100%)
Strand = Plus / Plus


Query: 910 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 469


Query: 970 tgaagataaaccagttggtggtattggtgca 1000
|||||||||||||||||||||||||||||||
Sbjct: 470 tgaagataaaccagttggtggtattggtgca 500


Score = 137 bits (69), Expect = 5e-32
Identities = 69/69 (100%)
Strand = Plus / Plus


Query: 1325 tcatcaacacctcaaattgtaattgatatgcgtggtccagaagcaagattgtatacaggt 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 tcatcaacacctcaaattgtaattgatatgcgtggtccagaagcaagattgtatacaggt 1384


Query: 1385 atggaagaa 1393
|||||||||
Sbjct: 1385 atggaagaa 1393


Score = 30.2 bits (15), Expect = 9.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1180 tgatagtgataatga 1194
|||||||||||||||
Sbjct: 446 tgatagtgataatga 460


Score = 30.2 bits (15), Expect = 9.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 446 tgatagtgataatga 460
|||||||||||||||
Sbjct: 1180 tgatagtgataatga 1194


>Contig-U11234-1 (Contig-U11234-1Q) /CSM_Contig/Contig-U11234-1Q.Seq.d
Length = 2513

Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 419 tggtggtggtggtggtaataat 440
||||||||||||||||||||||
Sbjct: 1919 tggtggtggtggtggtaataat 1940


Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 919 tggtggtggtggtggtaataat 940
||||||||||||||||||||||
Sbjct: 1919 tggtggtggtggtggtaataat 1940


Score = 34.2 bits (17), Expect = 0.57
Identities = 26/29 (89%)
Strand = Plus / Plus


Query: 419 tggtggtggtggtggtaataattatgatg 447
|||||||||||||||| |||| ||||||
Sbjct: 1916 tggtggtggtggtggtggtaataatgatg 1944


Score = 34.2 bits (17), Expect = 0.57
Identities = 26/29 (89%)
Strand = Plus / Plus


Query: 919 tggtggtggtggtggtaataattatgatg 947
|||||||||||||||| |||| ||||||
Sbjct: 1916 tggtggtggtggtggtggtaataatgatg 1944


>Contig-U10875-1 (Contig-U10875-1Q) /CSM_Contig/Contig-U10875-1Q.Seq.d
Length = 2671

Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 919 tggtggtggtggtggtaataat 940
||||||||||||||||||||||
Sbjct: 2583 tggtggtggtggtggtaataat 2604


Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 419 tggtggtggtggtggtaataat 440
||||||||||||||||||||||
Sbjct: 2583 tggtggtggtggtggtaataat 2604


Score = 32.2 bits (16), Expect = 2.3
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 419 tggtggtggtggtggt 434
||||||||||||||||
Sbjct: 2580 tggtggtggtggtggt 2595


Score = 32.2 bits (16), Expect = 2.3
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 919 tggtggtggtggtggt 934
||||||||||||||||
Sbjct: 2580 tggtggtggtggtggt 2595


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,154
Number of Sequences: 8402
Number of extensions: 41154
Number of successful extensions: 7934
Number of sequences better than 10.0: 656
length of query: 1436
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1420
effective length of database: 7,941,110
effective search space: 11276376200
effective search space used: 11276376200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.10
Homology vs DNA
Query= Contig-U15056-1 (Contig-U15056-1Q) /CSM_Contig/Contig-U15056-1Q.Seq.d
(1436 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(DQ342053) Dictyostelium discoideum STIP mRNA, complete cds. 706 0.0 5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 706 0.0 12
(BJ359106) Dictyostelium discoideum cDNA clone:ddc12f24, 5' ... 168 e-103 3
(AU074018) Dictyostelium discoideum slug cDNA, clone SSJ283. 385 e-102 1
(BJ372489) Dictyostelium discoideum cDNA clone:ddc12f24, 3' ... 349 2e-91 1
(AC180271) Strongylocentrotus purpuratus clone R3-3123M09, W... 56 8e-09 9
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 46 8e-09 13
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 2e-08 14
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 4e-05 17
(AC179018) Strongylocentrotus purpuratus clone R3-1108G23, W... 46 4e-05 6
(AC201440) Strongylocentrotus purpuratus clone R3-3019L20, W... 48 5e-05 3
(EK567312) 1095521049226 Global-Ocean-Sampling_GS-32-01-01-1... 40 5e-05 4
(AY466339) Litopenaeus vannamei microsatellite TUMXLV9.162 s... 44 6e-05 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 9e-05 11
(AF360097) Penaeus (Litopenaeus) vannamei microsatellite TUM... 40 1e-04 3
(CC586704) CH240_384I7.T7 CHORI-240 Bos taurus genomic clone... 42 1e-04 3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 38 1e-04 12
(CO381816) FRA1361 Strawberry Lambda Zap Express Library Fra... 42 2e-04 2
(BV060127) S209P6488RH9.T0 C3H/HeJ Mus musculus STS genomic,... 38 2e-04 4
(AC097306) Rattus norvegicus clone CH230-36A16, *** SEQUENCI... 46 2e-04 4
(AL606510) Human DNA sequence from clone RP11-435D11 on chro... 44 2e-04 4
(AC180700) Strongylocentrotus purpuratus clone R3-3087G09, W... 46 2e-04 2
(AC168365) Strongylocentrotus purpuratus clone R3-4013M22, W... 44 2e-04 3
(BM276500) PfESToaa84b09.y1 Plasmodium falciparum 3D7 gameto... 42 2e-04 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 3e-04 14
(FC855047) CBHN8832.fwd CBHN Metridium senile tentacle Metri... 38 3e-04 3
(BM275314) PfESToaa67a07.y1 Plasmodium falciparum 3D7 gameto... 42 3e-04 2
(FD806489) CBGZ12660.fwd CBGZ Volvox carteri f. nagariensis ... 40 3e-04 3
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 3e-04 11
(AC094435) Rattus norvegicus clone CH230-4F14, *** SEQUENCIN... 46 4e-04 3
(EY310451) CAWX22154.fwd CAWX Helobdella robusta Primary Ear... 46 4e-04 2
(AC180639) Strongylocentrotus purpuratus clone R3-3019I16, W... 50 4e-04 4
(AC178943) Strongylocentrotus purpuratus clone R3-3121D4, WO... 48 7e-04 2
(AC194993) Pan troglodytes BAC clone CH251-289J24 from chrom... 44 8e-04 4
(DH437813) Macropus eugenii DNA with T7 primer, fosmid clone... 44 8e-04 2
(AC099147) Rattus norvegicus clone CH230-66K22, *** SEQUENCI... 58 0.001 1
(AC164755) Bos taurus clone CH240-155K21, *** SEQUENCING IN ... 42 0.001 5
(AQ661488) Sheared DNA-28A15.TR Sheared DNA Trypanosoma bruc... 46 0.001 2
(AC180897) Strongylocentrotus purpuratus clone R3-3064E11, W... 44 0.001 5
(AC176708) Strongylocentrotus purpuratus clone R3-112A11, WO... 48 0.001 7
(AC130110) Rattus norvegicus clone CH230-55M4, *** SEQUENCIN... 54 0.001 3
(AC192120) Pan troglodytes BAC clone CH251-683F10 from chrom... 44 0.001 4
(EG863123) EST_ssal_eve_56102 ssaleve thyroid Salmo salar cD... 42 0.001 2
(FE154432) LV_LO_RA014H12r Litopenaeus vannamei lymphoid org... 40 0.002 2
(FE154431) LV_LO_RA014F12r Litopenaeus vannamei lymphoid org... 40 0.002 2
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.002 13
(FE768894) CCAG4610.g1 CCAG Petrolisthes cinctipes heart, gi... 34 0.002 4
(FM162580) Trypanosoma brucei Lister 427 surface glycoprotei... 44 0.002 3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 0.002 14
(AL476320) T. brucei sheared genomic DNA clone 187f02, rever... 38 0.002 3
(AC135649) Rattus norvegicus clone CH230-179G10, WORKING DRA... 38 0.003 2
(BM522224) ESSU0762 S.scabiei cDNA library Sarcoptes scabiei... 40 0.003 2
(AC180273) Strongylocentrotus purpuratus clone R3-3123N06, W... 56 0.004 1
(EF828482) Mus musculus C57BL/6N IST11434H4HMF1 gene trap em... 40 0.004 2
(FD716105) CAAA2012.rev CAAA Petromyzon marinus Petromyzon m... 42 0.004 2
(FC852335) CBHN7301.rev CBHN Metridium senile tentacle Metri... 40 0.005 2
(AG991975) Hemicentrotus pulcherrimus BAC clone: BUB1-16P01_... 38 0.005 3
(BJ384061) Dictyostelium discoideum cDNA clone:ddc48h05, 3' ... 42 0.005 2
(CQ343439) Sequence 17533 from Patent WO0157275. 40 0.006 3
(CQ306317) Sequence 17422 from Patent WO0186003. 40 0.006 3
(CQ269292) Sequence 17553 from Patent WO0157277. 40 0.006 3
(CQ231122) Sequence 17961 from Patent WO0157273. 40 0.006 3
(CQ207658) Sequence 9935 from Patent WO0157271. 40 0.006 3
(CQ183234) Sequence 14630 from Patent WO0157274. 40 0.006 3
(CQ147885) Sequence 17907 from Patent WO0157276. 40 0.006 3
(CQ109248) Sequence 18107 from Patent WO0157272. 40 0.006 3
(CQ078258) Sequence 14058 from Patent WO0157278. 40 0.006 3
(CQ058870) Sequence 9690 from Patent WO0157270. 40 0.006 3
(BZ164233) CH230-246O13.TJB CHORI-230 Segment 2 Rattus norve... 40 0.006 2
(AZ079742) RPCI-23-423N18.TV RPCI-23 Mus musculus genomic cl... 40 0.008 2
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 36 0.008 7
(AC175900) Strongylocentrotus purpuratus clone R3-14M07, WOR... 40 0.008 4
(AC201448) Strongylocentrotus purpuratus clone R3-3026I14, W... 50 0.009 5
(DE221360) Trifolium pratense DNA, clone:RCG12607. 46 0.009 2
(AC139653) Rattus norvegicus clone CH230-304M11, WORKING DRA... 46 0.009 6
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 42 0.009 15
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.010 16
(AC166369) Mus musculus BAC clone RP23-45A11 from chromosome... 44 0.010 2
(AC154627) Mus musculus BAC clone RP23-312J2 from chromosome... 44 0.010 2
(AC008246) Homo sapiens chromosome 11 clone RP11-26C9 map 11... 40 0.010 2
(AP003126) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 40 0.010 2
(AC018968) Homo sapiens chromosome 11 clone RP11-684F2 map 1... 40 0.010 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 40 0.011 18
(DH772441) Rattus norvegicus DNA, BAC clone: RNB1-357N11, 5'... 44 0.011 2
(AC180231) Strongylocentrotus purpuratus clone R3-3008E10, W... 44 0.011 3
(EY356062) CAWZ4152.fwd CAWZ Helobdella robusta Primary Late... 42 0.013 2
(CC816480) 1O0002E06F Oxytricha plasmid UUGC1O library Sterk... 38 0.013 2
(AC177399) Strongylocentrotus purpuratus clone R3-1031I17, W... 42 0.013 4
(AC216543) Populus trichocarpa clone POP015-B14, complete se... 44 0.013 7
(FE114371) LV_HC_RA060O06r Litopenaeus vannamei hemocyte cDN... 44 0.013 3
(FE114372) LV_HC_RA060A08f Litopenaeus vannamei hemocyte cDN... 44 0.013 3
(FE116441) LV_HC_RA064P13f Litopenaeus vannamei hemocyte cDN... 36 0.014 3
(DH514353) Rattus norvegicus DNA, BAC clone: RNB1-009I02, 3'... 34 0.014 4
(AQ935708) CpG2608A CpIOWAgDNA1 Cryptosporidium parvum genom... 36 0.015 3
(AC099341) Homo sapiens BAC clone RP11-317C13 from 7, comple... 40 0.017 4
(DH801469) Rattus norvegicus DNA, BAC clone: RNB1-397C03, 5'... 34 0.017 4
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.017 11
(BJ406136) Dictyostelium discoideum cDNA clone:dds34d08, 3' ... 44 0.017 3
(AC187854) Populus trichocarpa clone Pop1-11B14, complete se... 44 0.017 6
(ER594595) 1093016216467 Global-Ocean-Sampling_GS-36-01-01-2... 40 0.019 2

>(DQ342053) Dictyostelium discoideum STIP mRNA, complete cds.
Length = 2822

Score = 706 bits (356), Expect(5) = 0.0
Identities = 356/356 (100%)
Strand = Plus / Plus


Query: 910 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 461


Query: 970 tgaagataaaccagttggtggtattggtgcagctttattatcaaaaatgggttataaagg 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgaagataaaccagttggtggtattggtgcagctttattatcaaaaatgggttataaagg 521


Query: 1030 tacaggtggtttaggtcgtgatggtggcggtatggttgaaccaattaaagtacaagttag 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tacaggtggtttaggtcgtgatggtggcggtatggttgaaccaattaaagtacaagttag 581


Query: 1090 acctaaaaatgctggtttagcatctgttacagaattaaatgttaatagtagtgatgatag 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acctaaaaatgctggtttagcatctgttacagaattaaatgttaatagtagtgatgatag 641


Query: 1150 cgacgatagtgatcaaagtgaaggtgatactgatagtgataatgaaaataagagatcatt 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgacgatagtgatcaaagtgaaggtgatactgatagtgataatgaaaataagagatcatt 701


Query: 1210 aggttggaaaaagaaagaaccaaaattaaaatatgattttgatgaacatttagaat 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aggttggaaaaagaaagaaccaaaattaaaatatgattttgatgaacatttagaat 757

Score = 204 bits (103), Expect(5) = 0.0
Identities = 106/107 (99%)
Strand = Plus / Plus


Query: 96 gaaaattttcaaaagaagatgcaatctatggtgtatttaatgatggatggggagattatg 155
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gaaaatttacaaaagaagatgcaatctatggtgtatttaatgatggatggggagattatg 148


Query: 156 aagatgaagaagaatctaaaatgacagaggaggaatattataaaatg 202
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aagatgaagaagaatctaaaatgacagaggaggaatattataaaatg 195

Score = 165 bits (83), Expect(5) = 0.0
Identities = 101/107 (94%)
Strand = Plus / Plus


Query: 210 gatattccaccccagttggtttcgttgcaagtggtatttatgaacccaatgaacattaat 269
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 203 gatattcaacaccagttggtttcgttgcaagtggtatttatgaaccaaatgaacataaat 262


Query: 270 taaaaaataaagatggtgaaaatattgtcaacgattatgatgacggt 316
||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 263 taaaaaataaagatggtgaaaatattgacaacgatgatgatgacggt 309

Score = 121 bits (61), Expect(5) = 0.0
Identities = 73/77 (94%)
Strand = Plus / Plus


Query: 8 aaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgaccaagaattt 67
||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct: 1 aaaaattcaacaatcgagaaatatcaaacgatgaatattgagggggatgacgaagaattt 60


Query: 68 tataattttaatgatat 84
|||||||||||||||||
Sbjct: 61 tataattttaatgatat 77

Score = 119 bits (60), Expect(5) = 0.0
Identities = 60/60 (100%)
Strand = Plus / Plus


Query: 1334 cctcaaattgtaattgatatgcgtggtccagaagcaagattgtatacaggtatggaagaa 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cctcaaattgtaattgatatgcgtggtccagaagcaagattgtatacaggtatggaagaa 885

Score = 204 bits (103), Expect(3) = e-122
Identities = 106/107 (99%)
Strand = Plus / Plus


Query: 596 gaaaattttcaaaagaagatgcaatctatggtgtatttaatgatggatggggagattatg 655
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gaaaatttacaaaagaagatgcaatctatggtgtatttaatgatggatggggagattatg 148


Query: 656 aagatgaagaagaatctaaaatgacagaggaggaatattataaaatg 702
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aagatgaagaagaatctaaaatgacagaggaggaatattataaaatg 195

Score = 165 bits (83), Expect(3) = e-122
Identities = 101/107 (94%)
Strand = Plus / Plus


Query: 710 gatattccaccccagttggtttcgttgcaagtggtatttatgaacccaatgaacattaat 769
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 203 gatattcaacaccagttggtttcgttgcaagtggtatttatgaaccaaatgaacataaat 262


Query: 770 taaaaaataaagatggtgaaaatattgtcaacgattatgatgacggt 816
||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 263 taaaaaataaagatggtgaaaatattgacaacgatgatgatgacggt 309

Score = 121 bits (61), Expect(3) = e-122
Identities = 73/77 (94%)
Strand = Plus / Plus


Query: 508 aaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgaccaagaattt 567
||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct: 1 aaaaattcaacaatcgagaaatatcaaacgatgaatattgagggggatgacgaagaattt 60


Query: 568 tataattttaatgatat 584
|||||||||||||||||
Sbjct: 61 tataattttaatgatat 77

Score = 180 bits (91), Expect(3) = 2e-41
Identities = 91/91 (100%)
Strand = Plus / Plus


Query: 410 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 461


Query: 470 tgaagataaaccagttggtggtattggtgca 500
|||||||||||||||||||||||||||||||
Sbjct: 462 tgaagataaaccagttggtggtattggtgca 492

Score = 30.2 bits (15), Expect(3) = 2e-41
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 946 tgatagtgataatga 960
|||||||||||||||
Sbjct: 672 tgatagtgataatga 686

Score = 26.3 bits (13), Expect(3) = 2e-41
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 1228 accaaaattaaaa 1240
|||||||||||||
Sbjct: 1629 accaaaattaaaa 1641

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,530,030,886
Number of extensions: 107350691
Number of successful extensions: 12334997
Number of sequences better than 10.0: 2027
Length of query: 1436
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1412
Effective length of database: 97,308,875,965
Effective search space: 137400132862580
Effective search space used: 137400132862580
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.14
Homology vs Protein
Query= Contig-U15056-1 (Contig-U15056-1Q) /CSM_Contig/Contig-U15056-1Q.Seq.d
(1436 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,413,896,573
Number of extensions: 18630147
Number of successful extensions: 41287
Number of sequences better than 10.0: 0
Number of HSP's gapped: 41087
Number of HSP's successfully gapped: 0
Length of query: 478
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 346
Effective length of database: 623,955,076
Effective search space: 215888456296
Effective search space used: 215888456296
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.95 gvh: 0.16 alm: 0.51 top: 0.93 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 1.27 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U15056-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0