Contig-U15056-1 |
Contig ID |
Contig-U15056-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1436 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
3674077 |
End point |
3675251 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
4 |
Link to clone list |
U15056 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.10 |
Homology vs DNA |
Query= Contig-U15056-1 (Contig-U15056-1Q) /CSM_Contig/Contig-U15056-1Q.Seq.d (1436 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(DQ342053) Dictyostelium discoideum STIP mRNA, complete cds. 706 0.0 5 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 706 0.0 12 (BJ359106) Dictyostelium discoideum cDNA clone:ddc12f24, 5' ... 168 e-103 3 (AU074018) Dictyostelium discoideum slug cDNA, clone SSJ283. 385 e-102 1 (BJ372489) Dictyostelium discoideum cDNA clone:ddc12f24, 3' ... 349 2e-91 1 (AC180271) Strongylocentrotus purpuratus clone R3-3123M09, W... 56 8e-09 9 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 46 8e-09 13 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 2e-08 14 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 4e-05 17 (AC179018) Strongylocentrotus purpuratus clone R3-1108G23, W... 46 4e-05 6 (AC201440) Strongylocentrotus purpuratus clone R3-3019L20, W... 48 5e-05 3 (EK567312) 1095521049226 Global-Ocean-Sampling_GS-32-01-01-1... 40 5e-05 4 (AY466339) Litopenaeus vannamei microsatellite TUMXLV9.162 s... 44 6e-05 3 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 9e-05 11 (AF360097) Penaeus (Litopenaeus) vannamei microsatellite TUM... 40 1e-04 3 (CC586704) CH240_384I7.T7 CHORI-240 Bos taurus genomic clone... 42 1e-04 3 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 38 1e-04 12 (CO381816) FRA1361 Strawberry Lambda Zap Express Library Fra... 42 2e-04 2 (BV060127) S209P6488RH9.T0 C3H/HeJ Mus musculus STS genomic,... 38 2e-04 4 (AC097306) Rattus norvegicus clone CH230-36A16, *** SEQUENCI... 46 2e-04 4 (AL606510) Human DNA sequence from clone RP11-435D11 on chro... 44 2e-04 4 (AC180700) Strongylocentrotus purpuratus clone R3-3087G09, W... 46 2e-04 2 (AC168365) Strongylocentrotus purpuratus clone R3-4013M22, W... 44 2e-04 3 (BM276500) PfESToaa84b09.y1 Plasmodium falciparum 3D7 gameto... 42 2e-04 2 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 3e-04 14 (FC855047) CBHN8832.fwd CBHN Metridium senile tentacle Metri... 38 3e-04 3 (BM275314) PfESToaa67a07.y1 Plasmodium falciparum 3D7 gameto... 42 3e-04 2 (FD806489) CBGZ12660.fwd CBGZ Volvox carteri f. nagariensis ... 40 3e-04 3 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 3e-04 11 (AC094435) Rattus norvegicus clone CH230-4F14, *** SEQUENCIN... 46 4e-04 3 (EY310451) CAWX22154.fwd CAWX Helobdella robusta Primary Ear... 46 4e-04 2 (AC180639) Strongylocentrotus purpuratus clone R3-3019I16, W... 50 4e-04 4 (AC178943) Strongylocentrotus purpuratus clone R3-3121D4, WO... 48 7e-04 2 (AC194993) Pan troglodytes BAC clone CH251-289J24 from chrom... 44 8e-04 4 (DH437813) Macropus eugenii DNA with T7 primer, fosmid clone... 44 8e-04 2 (AC099147) Rattus norvegicus clone CH230-66K22, *** SEQUENCI... 58 0.001 1 (AC164755) Bos taurus clone CH240-155K21, *** SEQUENCING IN ... 42 0.001 5 (AQ661488) Sheared DNA-28A15.TR Sheared DNA Trypanosoma bruc... 46 0.001 2 (AC180897) Strongylocentrotus purpuratus clone R3-3064E11, W... 44 0.001 5 (AC176708) Strongylocentrotus purpuratus clone R3-112A11, WO... 48 0.001 7 (AC130110) Rattus norvegicus clone CH230-55M4, *** SEQUENCIN... 54 0.001 3 (AC192120) Pan troglodytes BAC clone CH251-683F10 from chrom... 44 0.001 4 (EG863123) EST_ssal_eve_56102 ssaleve thyroid Salmo salar cD... 42 0.001 2 (FE154432) LV_LO_RA014H12r Litopenaeus vannamei lymphoid org... 40 0.002 2 (FE154431) LV_LO_RA014F12r Litopenaeus vannamei lymphoid org... 40 0.002 2 (AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.002 13 (FE768894) CCAG4610.g1 CCAG Petrolisthes cinctipes heart, gi... 34 0.002 4 (FM162580) Trypanosoma brucei Lister 427 surface glycoprotei... 44 0.002 3 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 0.002 14 (AL476320) T. brucei sheared genomic DNA clone 187f02, rever... 38 0.002 3 (AC135649) Rattus norvegicus clone CH230-179G10, WORKING DRA... 38 0.003 2 (BM522224) ESSU0762 S.scabiei cDNA library Sarcoptes scabiei... 40 0.003 2 (AC180273) Strongylocentrotus purpuratus clone R3-3123N06, W... 56 0.004 1 (EF828482) Mus musculus C57BL/6N IST11434H4HMF1 gene trap em... 40 0.004 2 (FD716105) CAAA2012.rev CAAA Petromyzon marinus Petromyzon m... 42 0.004 2 (FC852335) CBHN7301.rev CBHN Metridium senile tentacle Metri... 40 0.005 2 (AG991975) Hemicentrotus pulcherrimus BAC clone: BUB1-16P01_... 38 0.005 3 (BJ384061) Dictyostelium discoideum cDNA clone:ddc48h05, 3' ... 42 0.005 2 (CQ343439) Sequence 17533 from Patent WO0157275. 40 0.006 3 (CQ306317) Sequence 17422 from Patent WO0186003. 40 0.006 3 (CQ269292) Sequence 17553 from Patent WO0157277. 40 0.006 3 (CQ231122) Sequence 17961 from Patent WO0157273. 40 0.006 3 (CQ207658) Sequence 9935 from Patent WO0157271. 40 0.006 3 (CQ183234) Sequence 14630 from Patent WO0157274. 40 0.006 3 (CQ147885) Sequence 17907 from Patent WO0157276. 40 0.006 3 (CQ109248) Sequence 18107 from Patent WO0157272. 40 0.006 3 (CQ078258) Sequence 14058 from Patent WO0157278. 40 0.006 3 (CQ058870) Sequence 9690 from Patent WO0157270. 40 0.006 3 (BZ164233) CH230-246O13.TJB CHORI-230 Segment 2 Rattus norve... 40 0.006 2 (AZ079742) RPCI-23-423N18.TV RPCI-23 Mus musculus genomic cl... 40 0.008 2 (AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 36 0.008 7 (AC175900) Strongylocentrotus purpuratus clone R3-14M07, WOR... 40 0.008 4 (AC201448) Strongylocentrotus purpuratus clone R3-3026I14, W... 50 0.009 5 (DE221360) Trifolium pratense DNA, clone:RCG12607. 46 0.009 2 (AC139653) Rattus norvegicus clone CH230-304M11, WORKING DRA... 46 0.009 6 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 42 0.009 15 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.010 16 (AC166369) Mus musculus BAC clone RP23-45A11 from chromosome... 44 0.010 2 (AC154627) Mus musculus BAC clone RP23-312J2 from chromosome... 44 0.010 2 (AC008246) Homo sapiens chromosome 11 clone RP11-26C9 map 11... 40 0.010 2 (AP003126) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 40 0.010 2 (AC018968) Homo sapiens chromosome 11 clone RP11-684F2 map 1... 40 0.010 2 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 40 0.011 18 (DH772441) Rattus norvegicus DNA, BAC clone: RNB1-357N11, 5'... 44 0.011 2 (AC180231) Strongylocentrotus purpuratus clone R3-3008E10, W... 44 0.011 3 (EY356062) CAWZ4152.fwd CAWZ Helobdella robusta Primary Late... 42 0.013 2 (CC816480) 1O0002E06F Oxytricha plasmid UUGC1O library Sterk... 38 0.013 2 (AC177399) Strongylocentrotus purpuratus clone R3-1031I17, W... 42 0.013 4 (AC216543) Populus trichocarpa clone POP015-B14, complete se... 44 0.013 7 (FE114371) LV_HC_RA060O06r Litopenaeus vannamei hemocyte cDN... 44 0.013 3 (FE114372) LV_HC_RA060A08f Litopenaeus vannamei hemocyte cDN... 44 0.013 3 (FE116441) LV_HC_RA064P13f Litopenaeus vannamei hemocyte cDN... 36 0.014 3 (DH514353) Rattus norvegicus DNA, BAC clone: RNB1-009I02, 3'... 34 0.014 4 (AQ935708) CpG2608A CpIOWAgDNA1 Cryptosporidium parvum genom... 36 0.015 3 (AC099341) Homo sapiens BAC clone RP11-317C13 from 7, comple... 40 0.017 4 (DH801469) Rattus norvegicus DNA, BAC clone: RNB1-397C03, 5'... 34 0.017 4 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.017 11 (BJ406136) Dictyostelium discoideum cDNA clone:dds34d08, 3' ... 44 0.017 3 (AC187854) Populus trichocarpa clone Pop1-11B14, complete se... 44 0.017 6 (ER594595) 1093016216467 Global-Ocean-Sampling_GS-36-01-01-2... 40 0.019 2
>(DQ342053) Dictyostelium discoideum STIP mRNA, complete cds. Length = 2822
Score = 706 bits (356), Expect(5) = 0.0 Identities = 356/356 (100%) Strand = Plus / Plus
Query: 910 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 969 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 461
Query: 970 tgaagataaaccagttggtggtattggtgcagctttattatcaaaaatgggttataaagg 1029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 tgaagataaaccagttggtggtattggtgcagctttattatcaaaaatgggttataaagg 521
Query: 1030 tacaggtggtttaggtcgtgatggtggcggtatggttgaaccaattaaagtacaagttag 1089 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 tacaggtggtttaggtcgtgatggtggcggtatggttgaaccaattaaagtacaagttag 581
Query: 1090 acctaaaaatgctggtttagcatctgttacagaattaaatgttaatagtagtgatgatag 1149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 582 acctaaaaatgctggtttagcatctgttacagaattaaatgttaatagtagtgatgatag 641
Query: 1150 cgacgatagtgatcaaagtgaaggtgatactgatagtgataatgaaaataagagatcatt 1209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 642 cgacgatagtgatcaaagtgaaggtgatactgatagtgataatgaaaataagagatcatt 701
Query: 1210 aggttggaaaaagaaagaaccaaaattaaaatatgattttgatgaacatttagaat 1265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 702 aggttggaaaaagaaagaaccaaaattaaaatatgattttgatgaacatttagaat 757
Score = 204 bits (103), Expect(5) = 0.0 Identities = 106/107 (99%) Strand = Plus / Plus
Query: 96 gaaaattttcaaaagaagatgcaatctatggtgtatttaatgatggatggggagattatg 155 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89 gaaaatttacaaaagaagatgcaatctatggtgtatttaatgatggatggggagattatg 148
Query: 156 aagatgaagaagaatctaaaatgacagaggaggaatattataaaatg 202 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 aagatgaagaagaatctaaaatgacagaggaggaatattataaaatg 195
Score = 165 bits (83), Expect(5) = 0.0 Identities = 101/107 (94%) Strand = Plus / Plus
Query: 210 gatattccaccccagttggtttcgttgcaagtggtatttatgaacccaatgaacattaat 269 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 203 gatattcaacaccagttggtttcgttgcaagtggtatttatgaaccaaatgaacataaat 262
Query: 270 taaaaaataaagatggtgaaaatattgtcaacgattatgatgacggt 316 ||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 263 taaaaaataaagatggtgaaaatattgacaacgatgatgatgacggt 309
Score = 121 bits (61), Expect(5) = 0.0 Identities = 73/77 (94%) Strand = Plus / Plus
Query: 8 aaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgaccaagaattt 67 ||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||| Sbjct: 1 aaaaattcaacaatcgagaaatatcaaacgatgaatattgagggggatgacgaagaattt 60
Query: 68 tataattttaatgatat 84 ||||||||||||||||| Sbjct: 61 tataattttaatgatat 77
Score = 119 bits (60), Expect(5) = 0.0 Identities = 60/60 (100%) Strand = Plus / Plus
Query: 1334 cctcaaattgtaattgatatgcgtggtccagaagcaagattgtatacaggtatggaagaa 1393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 826 cctcaaattgtaattgatatgcgtggtccagaagcaagattgtatacaggtatggaagaa 885
Score = 204 bits (103), Expect(3) = e-122 Identities = 106/107 (99%) Strand = Plus / Plus
Query: 596 gaaaattttcaaaagaagatgcaatctatggtgtatttaatgatggatggggagattatg 655 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89 gaaaatttacaaaagaagatgcaatctatggtgtatttaatgatggatggggagattatg 148
Query: 656 aagatgaagaagaatctaaaatgacagaggaggaatattataaaatg 702 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 aagatgaagaagaatctaaaatgacagaggaggaatattataaaatg 195
Score = 165 bits (83), Expect(3) = e-122 Identities = 101/107 (94%) Strand = Plus / Plus
Query: 710 gatattccaccccagttggtttcgttgcaagtggtatttatgaacccaatgaacattaat 769 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 203 gatattcaacaccagttggtttcgttgcaagtggtatttatgaaccaaatgaacataaat 262
Query: 770 taaaaaataaagatggtgaaaatattgtcaacgattatgatgacggt 816 ||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 263 taaaaaataaagatggtgaaaatattgacaacgatgatgatgacggt 309
Score = 121 bits (61), Expect(3) = e-122 Identities = 73/77 (94%) Strand = Plus / Plus
Query: 508 aaaaattcaacaatccagaaatatccaaccatgaatattgagggggatgaccaagaattt 567 ||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||| Sbjct: 1 aaaaattcaacaatcgagaaatatcaaacgatgaatattgagggggatgacgaagaattt 60
Query: 568 tataattttaatgatat 584 ||||||||||||||||| Sbjct: 61 tataattttaatgatat 77
Score = 180 bits (91), Expect(3) = 2e-41 Identities = 91/91 (100%) Strand = Plus / Plus
Query: 410 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 gaataaatatggtggtggtggtggtaataattatgatgatagtgataatgataaatcaat 461
Query: 470 tgaagataaaccagttggtggtattggtgca 500 ||||||||||||||||||||||||||||||| Sbjct: 462 tgaagataaaccagttggtggtattggtgca 492
Score = 30.2 bits (15), Expect(3) = 2e-41 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 946 tgatagtgataatga 960 ||||||||||||||| Sbjct: 672 tgatagtgataatga 686
Score = 26.3 bits (13), Expect(3) = 2e-41 Identities = 13/13 (100%) Strand = Plus / Plus
Query: 1228 accaaaattaaaa 1240 ||||||||||||| Sbjct: 1629 accaaaattaaaa 1641
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,530,030,886 Number of extensions: 107350691 Number of successful extensions: 12334997 Number of sequences better than 10.0: 2027 Length of query: 1436 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1412 Effective length of database: 97,308,875,965 Effective search space: 137400132862580 Effective search space used: 137400132862580 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.14 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |