Contig-U15038-1
Contig ID Contig-U15038-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15038-1 (Contig-U15038-1Q) /CSM_Contig/Contig-U15038-1Q.Seq.d
ACGAAACTGACCATTAAGAGTACTCCTTCGAAACAATTTTGAGTGGTTGT
TAGTAAGGCTTTTTCTGGCAAAAAGAGAAATTAGAGAGAGATCTTTAAAC
AACTGGGTTTAGAAATTCTATGATCATTTCGGTTGTGCCAAGATCTCACA
TTTAGTTAATCTCAGCACACATACATATACAAAATGGGTTTCGTCAAAGT
CGTTAAAACTAAAGCTTACTACAGCAGATATCAAGTCCAATTCCGTAGAA
GACGTGAAGGTAAAACTGATTATCAACAAAGACACAGATTAATCACTCAA
GATAAGAACAAGTACAACTCACCAAAATACAGACTTGTTGCTCGTATCAC
CAACACTGATGTTATTGCTCAAGTTGTCTACTCTAAGATTGTCGGTGATT
TCGTCTTATGTGCAGCTTACGCTCACGAATTACCAAGATTCGGTGTCAAA
GTTGGTCTCACCAACTATGCTTCATGTTATGCTACCGGTCTCTTATTAGC
TCGTAGATTATTAGCCAAATTAAAATTAGCCGATCTCTACAAAGGTGCTG
AAAAAGTTGACGGTAAAGTTTTCCTCGTCAAACCAGTCGACGACAAACCA
AGACCATTCAAAGCTAATCTCGATGTTGGTCTCGCTCGTACCTCAACTGG
TGCTAAAGTCTTTGCTGTCCTCAAAGGTGCTGTCGACGGTGGTATCTACG
TCCCACACGGTGAAACCCGTTTCGCTGGTTACAACGCTGAAAGCAAGAAA
TTAAACGCTGAAACTCTCCGTGGTTACATCTTTGGTAAACACGTTGCCTC
TTACATGACCTTATTACAAACTGAAGACGAAGATGCCTACAAAAAGATCT
TCTCTCAATACATCAAAAACGGTGTTGCTCCAAAAGATATCGAAACCATC
TATGCCAACGCTCACAAAGCCATCAGAGCCAACCCAGCCCCAGCTGCCAA
ATCAACCAAATCATACAAAGATATCAAATCCAAGAACCTCAGCAAGAGAA
CCCTCAAACAAAAGAAAGCTCGTGTTGCTTCCATCAAAGCTTCATACAAA
GCTCGTCTTTAAACATCTTGTTCTTTTTCAAGCTTTTTTAATTTAAACAA
TAAAAAATTTTAAATTGAAAAAAAAAAAAAATTGTATTTTTTTTTAACAT
CTAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 1169
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1032179
End point 1031133
Strand (PLUS/MINUS) MINUS
Number of clones 30
Number of EST 32
Link to clone list U15038
List of clone(s)

est1=VFH104F,1,487
est2=VFG859E,154,1115
est3=VFJ474F,155,702
est4=VFK383F,158,763
est5=VFK483F,158,693
est6=AHK819E,165,1114
est7=FC-AK01E,166,1161
est8=FC-BA15E,166,1161
est9=VSD336E,166,1115
est10=VFN413E,167,1108
est11=SLA690E,188,1163
est12=VFI286Z,386,1099
est13=SLB250Z,427,1119
est14=VSC396Z,517,1149
est15=FCL-AD13Z,518,1169
est16=VSA140Z,541,1156
est17=VSD896Z,550,1115
est18=FC-BA05Z,599,1148
est19=SLF471Z,603,1134
est20=SLE137Z,611,1138
est21=VSA160Z,693,1155
est22=SLI724Z,699,1124
est23=FC-AW15Z,727,1161
est24=SLA707Z,763,1125
est25=SLF771Z,821,1123
est26=VSF268E,826,1101
est27=VFJ474Z,833,1149
est28=VFK383Z,834,1051
est29=SLK191Z,860,1118
est30=SLA831E,992,1136
est31=SLK381F,993,1152
est32=SLK381Z,995,1152
Translated Amino Acid sequence
tkltikstpskqf*vvvskafsgkkrn*reifkqlgleil*sfrlcqdltfs*SQHTYIY
KMGFVKVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTD
VIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLY
KGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETR
FAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETI
YANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARVASIKASYKARL*tscsfs
sffnlnnkkf*iekkkklyffltskkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
tkltikstpskqf*vvvskafsgkkrn*reifkqlgleil*sfrlcqdltfs*SQHTYIY
KMGFVKVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTD
VIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLY
KGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETR
FAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETI
YANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARVASIKASYKARL*tscsfs
sffnlnnkkf*iekkkklyffltskkkkk


Frame B:
rn*plrvllrnnfewllvrlflakreirerslnnwv*kfydhfgcakishlvnlsthtyt
kwvsskslklklttadiksnsvedvkvkliinkdtd*slkirtstthqntdlllvsptlm
lllklstlrlsvissyvqltltnyqdsvsklvsptmlhvmlpvsy*lvdy*pn*n*pist
kvlkkltvkfsssnqsttnqdhsklismlvslvpqlvlksllsskvlstvvstshtvkpv
slvttlkarn*tlklsvvtslvntlplt*pyyklktkmptkrsslntsktvllqkiskps
mptltkpseptqpqlpnqpnhtkisnprtsarepsnkrklvllpsklhtklvfkhlvlfq
afli*tiknfklkkkknciff*hlkkkkk


Frame C:
etdh*eysfetilsgc**gffwqkeklerdl*ttgfrnsmiisvvprshi*lisahihiq
ngfrqsr*n*sllqqisspip*kt*r*n*lstktqinhsr*eqvqltkiqtccsyhqh*c
ycsscll*dcr*frlmcslrsritkircqswshqlcfmlcyrsliss*iisqikisrslq
rc*ks*r*sfprqtsrrqtktiqs*srcwsrsylnwc*slccpqrccrrwylrptr*npf
rwlqr*kqeikr*nspwlhlw*trcllhdlitn*rrrclqkdllsihqkrccskryrnhl
cqrsqshqsqpspscqinqiiqryqiqepqqenpqtkessccfhqsfiqssslnilfffk
lf*fkq*kiln*kkkkivfffni*kkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15038-1 (Contig-U15038-1Q)
/CSM_Contig/Contig-U15038-1Q.Seq.d
(1169 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15038-1 (Contig-U15038-1Q) /CSM_Contig/Conti... 2214 0.0
Contig-U16281-1 (Contig-U16281-1Q) /CSM_Contig/Conti... 305 8e-83
Contig-U09928-1 (Contig-U09928-1Q) /CSM_Contig/Conti... 280 5e-75
Contig-U16415-1 (Contig-U16415-1Q) /CSM_Contig/Conti... 159 1e-38
Contig-U15819-1 (Contig-U15819-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U15616-1 (Contig-U15616-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U12269-1 (Contig-U12269-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U11962-1 (Contig-U11962-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U10802-1 (Contig-U10802-1Q) /CSM_Contig/Conti... 36 0.12

>Contig-U15038-1 (Contig-U15038-1Q) /CSM_Contig/Contig-U15038-1Q.Seq.d
Length = 1169

Score = 2214 bits (1117), Expect = 0.0
Identities = 1117/1117 (100%)
Strand = Plus / Plus


Query: 1 acgaaactgaccattaagagtactccttcgaaacaattttgagtggttgttagtaaggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acgaaactgaccattaagagtactccttcgaaacaattttgagtggttgttagtaaggct 60


Query: 61 ttttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattcta 120


Query: 121 tgatcatttcggttgtgccaagatctcacatttagttaatctcagcacacatacatatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatcatttcggttgtgccaagatctcacatttagttaatctcagcacacatacatatac 180


Query: 181 aaaatgggtttcgtcaaagtcgttaaaactaaagcttactacagcagatatcaagtccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaatgggtttcgtcaaagtcgttaaaactaaagcttactacagcagatatcaagtccaa 240


Query: 241 ttccgtagaagacgtgaaggtaaaactgattatcaacaaagacacagattaatcactcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttccgtagaagacgtgaaggtaaaactgattatcaacaaagacacagattaatcactcaa 300


Query: 301 gataagaacaagtacaactcaccaaaatacagacttgttgctcgtatcaccaacactgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gataagaacaagtacaactcaccaaaatacagacttgttgctcgtatcaccaacactgat 360


Query: 361 gttattgctcaagttgtctactctaagattgtcggtgatttcgtcttatgtgcagcttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttattgctcaagttgtctactctaagattgtcggtgatttcgtcttatgtgcagcttac 420


Query: 421 gctcacgaattaccaagattcggtgtcaaagttggtctcaccaactatgcttcatgttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gctcacgaattaccaagattcggtgtcaaagttggtctcaccaactatgcttcatgttat 480


Query: 481 gctaccggtctcttattagctcgtagattattagccaaattaaaattagccgatctctac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctaccggtctcttattagctcgtagattattagccaaattaaaattagccgatctctac 540


Query: 541 aaaggtgctgaaaaagttgacggtaaagttttcctcgtcaaaccagtcgacgacaaacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaggtgctgaaaaagttgacggtaaagttttcctcgtcaaaccagtcgacgacaaacca 600


Query: 601 agaccattcaaagctaatctcgatgttggtctcgctcgtacctcaactggtgctaaagtc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agaccattcaaagctaatctcgatgttggtctcgctcgtacctcaactggtgctaaagtc 660


Query: 661 tttgctgtcctcaaaggtgctgtcgacggtggtatctacgtcccacacggtgaaacccgt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttgctgtcctcaaaggtgctgtcgacggtggtatctacgtcccacacggtgaaacccgt 720


Query: 721 ttcgctggttacaacgctgaaagcaagaaattaaacgctgaaactctccgtggttacatc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttcgctggttacaacgctgaaagcaagaaattaaacgctgaaactctccgtggttacatc 780


Query: 781 tttggtaaacacgttgcctcttacatgaccttattacaaactgaagacgaagatgcctac 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tttggtaaacacgttgcctcttacatgaccttattacaaactgaagacgaagatgcctac 840


Query: 841 aaaaagatcttctctcaatacatcaaaaacggtgttgctccaaaagatatcgaaaccatc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aaaaagatcttctctcaatacatcaaaaacggtgttgctccaaaagatatcgaaaccatc 900


Query: 901 tatgccaacgctcacaaagccatcagagccaacccagccccagctgccaaatcaaccaaa 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tatgccaacgctcacaaagccatcagagccaacccagccccagctgccaaatcaaccaaa 960


Query: 961 tcatacaaagatatcaaatccaagaacctcagcaagagaaccctcaaacaaaagaaagct 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tcatacaaagatatcaaatccaagaacctcagcaagagaaccctcaaacaaaagaaagct 1020


Query: 1021 cgtgttgcttccatcaaagcttcatacaaagctcgtctttaaacatcttgttctttttca 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cgtgttgcttccatcaaagcttcatacaaagctcgtctttaaacatcttgttctttttca 1080


Query: 1081 agcttttttaatttaaacaataaaaaattttaaattg 1117
|||||||||||||||||||||||||||||||||||||
Sbjct: 1081 agcttttttaatttaaacaataaaaaattttaaattg 1117


Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1132 ttgtatttttttttaacatct 1152
|||||||||||||||||||||
Sbjct: 1132 ttgtatttttttttaacatct 1152


>Contig-U16281-1 (Contig-U16281-1Q) /CSM_Contig/Contig-U16281-1Q.Seq.d
Length = 1726

Score = 305 bits (154), Expect = 8e-83
Identities = 154/154 (100%)
Strand = Plus / Plus


Query: 1 acgaaactgaccattaagagtactccttcgaaacaattttgagtggttgttagtaaggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acgaaactgaccattaagagtactccttcgaaacaattttgagtggttgttagtaaggct 60


Query: 61 ttttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattcta 120


Query: 121 tgatcatttcggttgtgccaagatctcacattta 154
||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatcatttcggttgtgccaagatctcacattta 154


>Contig-U09928-1 (Contig-U09928-1Q) /CSM_Contig/Contig-U09928-1Q.Seq.d
Length = 1357

Score = 280 bits (141), Expect = 5e-75
Identities = 148/149 (99%), Gaps = 1/149 (0%)
Strand = Plus / Plus


Query: 3 gaaactgaccattaagagtactccttcgaaacaattttgagtggttgttagtaaggcttt 62
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaaactgacc-ttaagagtactccttcgaaacaattttgagtggttgttagtaaggcttt 61


Query: 63 ttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattctatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattctatg 121


Query: 123 atcatttcggttgtgccaagatctcacat 151
|||||||||||||||||||||||||||||
Sbjct: 122 atcatttcggttgtgccaagatctcacat 150


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,580
Number of Sequences: 8402
Number of extensions: 21580
Number of successful extensions: 1803
Number of sequences better than 10.0: 150
length of query: 1169
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1153
effective length of database: 7,941,110
effective search space: 9156099830
effective search space used: 9156099830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.10
Homology vs DNA
Query= Contig-U15038-1 (Contig-U15038-1Q) /CSM_Contig/Contig-U15038-1Q.Seq.d
(1169 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU284510) Dictyostelium discoideum gamete cDNA clone:FC-BA1... 1657 0.0 1
(AU060248) Dictyostelium discoideum slug cDNA, clone SLA690. 1348 0.0 1
(BJ435438) Dictyostelium discoideum cDNA clone:ddv27j04, 3' ... 1332 0.0 1
(BJ432169) Dictyostelium discoideum cDNA clone:ddv17k22, 3' ... 1332 0.0 1
(BJ431546) Dictyostelium discoideum cDNA clone:ddv14f16, 3' ... 1328 0.0 1
(BJ353965) Dictyostelium discoideum cDNA clone:dda52f06, 3' ... 1285 0.0 1
(AU263864) Dictyostelium discoideum vegetative cDNA clone:VS... 1211 0.0 1
(BJ415207) Dictyostelium discoideum cDNA clone:ddv21f21, 5' ... 1201 0.0 1
(C23694) Dictyostelium discoideum gamete cDNA, clone FC-AK01. 1164 0.0 2
(BJ335924) Dictyostelium discoideum cDNA clone:dda52f06, 5' ... 1088 0.0 1
(AU263863) Dictyostelium discoideum vegetative cDNA clone:VS... 1082 0.0 1
(BJ414602) Dictyostelium discoideum cDNA clone:ddv19d20, 5' ... 1078 0.0 1
(AU262537) Dictyostelium discoideum vegetative cDNA clone:VS... 1065 0.0 1
(BJ415208) Dictyostelium discoideum cDNA clone:ddv21f22, 5' ... 1063 0.0 1
(AU261306) Dictyostelium discoideum vegetative cDNA clone:VS... 1025 0.0 1
(AU033633) Dictyostelium discoideum slug cDNA, clone SLB250. 985 0.0 2
(AU264711) Dictyostelium discoideum vegetative cDNA clone:VS... 995 0.0 1
(BJ413196) Dictyostelium discoideum cDNA clone:ddv14f16, 5' ... 975 0.0 1
(BJ413318) Dictyostelium discoideum cDNA clone:ddv15g01, 5' ... 965 0.0 1
(AU284502) Dictyostelium discoideum gamete cDNA clone:FC-BA0... 912 0.0 1
(AU034656) Dictyostelium discoideum slug cDNA, clone SLE137. 882 0.0 1
(AU052994) Dictyostelium discoideum slug cDNA, clone SLF471. 850 0.0 2
(BJ416735) Dictyostelium discoideum cDNA clone:ddv27j04, 5' ... 791 0.0 1
(AU261319) Dictyostelium discoideum vegetative cDNA clone:VS... 724 0.0 1
(AU053475) Dictyostelium discoideum slug cDNA, clone SLI724. 561 0.0 2
(AU284453) Dictyostelium discoideum gamete cDNA clone:FC-AW1... 603 e-168 1
(AU033385) Dictyostelium discoideum slug cDNA, clone SLA707. 539 e-149 1
(AU053129) Dictyostelium discoideum slug cDNA, clone SLF771. 472 e-128 1
(AU264969) Dictyostelium discoideum vegetative cDNA clone:VS... 456 e-124 1
(AU053937) Dictyostelium discoideum slug cDNA, clone SLK191. 394 e-105 1
(AU033373) Dictyostelium discoideum slug cDNA, clone SLA690. 391 e-104 1
(AU264968) Dictyostelium discoideum vegetative cDNA clone:VS... 373 1e-98 1
(BJ410192) Dictyostelium discoideum cDNA clone:ddv11g14, 5' ... 305 2e-78 1
(BJ325020) Dictyostelium discoideum cDNA clone:dda9c11, 5' e... 274 7e-69 1
(BJ432779) Dictyostelium discoideum cDNA clone:ddv19d20, 3' ... 204 5e-48 1
(BJ433422) Dictyostelium discoideum cDNA clone:ddv21f21, 3' ... 176 1e-39 1
(BJ394909) Dictyostelium discoideum cDNA clone:dds36o19, 5' ... 159 3e-34 1
(AU033442) Dictyostelium discoideum slug cDNA, clone SLA831. 133 2e-26 1
(EH431618) NPE00000901 Neocallimastix patriciarum ZAP II cDN... 82 3e-26 3
(AU060552) Dictyostelium discoideum slug cDNA, clone SLK381. 131 7e-26 1
(EH431179) NPE00000191 Neocallimastix patriciarum ZAP II cDN... 82 4e-25 3
(AU053995) Dictyostelium discoideum slug cDNA, clone SLK381. 127 1e-24 1
(AU266656) Dictyostelium discoideum vegetative cDNA clone:VS... 101 3e-20 2
(EH432077) NPE00000508 Neocallimastix patriciarum ZAP II cDN... 60 2e-16 3
(EC130565) HVE00004448 Hartmannella vermiformis Regular Smal... 72 4e-16 2
(EH431249) NPE00000023 Neocallimastix patriciarum ZAP II cDN... 46 1e-15 4
(DY884979) CeleSEQ141 Cunninghamella elegans pBluescript (Ec... 60 2e-15 3
(AP006852) Candida albicans genomic DNA, chromosome 7, compl... 48 2e-15 3
(DY885182) CeleSEQ384 Cunninghamella elegans pBluescript (Ec... 60 2e-15 3
(DY889871) CeleSEQ6836 Cunninghamella elegans pBluescript (E... 60 3e-15 3
(DY889347) CeleSEQ10864 Cunninghamella elegans pBluescript (... 60 3e-15 3
(DY893076) CeleSEQ12251 Cunninghamella elegans pBluescript (... 60 3e-15 3
(DY889985) CeleSEQ6995 Cunninghamella elegans pBluescript (E... 60 3e-15 3
(AX489176) Sequence 6476 from Patent WO02053728. 48 3e-15 3
(EH432045) NPE00000570 Neocallimastix patriciarum ZAP II cDN... 54 3e-15 3
(AR550536) Sequence 5667 from patent US 6747137. 48 3e-15 3
(DY892007) CeleSEQ8893 Cunninghamella elegans pBluescript (E... 60 3e-15 3
(DY885855) CeleSEQ1313 Cunninghamella elegans pBluescript (E... 60 3e-15 3
(DY886410) CeleSEQ2058 Cunninghamella elegans pBluescript (E... 60 3e-15 3
(DY892259) CeleSEQ9765 Cunninghamella elegans pBluescript (E... 60 3e-15 3
(DY890284) CeleSEQ9221 Cunninghamella elegans pBluescript (E... 60 3e-15 3
(DY891961) CeleSEQ8735 Cunninghamella elegans pBluescript (E... 60 3e-15 3
(DY889696) CeleSEQ11671 Cunninghamella elegans pBluescript (... 60 4e-15 3
(DY889391) CeleSEQ10918 Cunninghamella elegans pBluescript (... 60 4e-15 3
(DY885327) CeleSEQ581 Cunninghamella elegans pBluescript (Ec... 60 4e-15 3
(DY886439) CeleSEQ2096 Cunninghamella elegans pBluescript (E... 60 4e-15 3
(DY886850) CeleSEQ2660 Cunninghamella elegans pBluescript (E... 60 4e-15 3
(DY892083) CeleSEQ8991 Cunninghamella elegans pBluescript (E... 60 4e-15 3
(DY887375) CeleSEQ3347 Cunninghamella elegans pBluescript (E... 60 4e-15 3
(EE009523) ROE00005970 Rhizopus oryzae Company Rhizopus oryz... 48 5e-14 5
(CK151006) CsmgEST02483 Culicoides sonorensis female serum-f... 40 5e-14 5
(EE010229) ROE00001384 Rhizopus oryzae Company Rhizopus oryz... 48 6e-14 5
(DY888380) CeleSEQ5299 Cunninghamella elegans pBluescript (E... 52 6e-13 3
(EE008321) ROE00007282 Rhizopus oryzae Company Rhizopus oryz... 56 6e-13 4
(EE009909) ROE00000251 Rhizopus oryzae Company Rhizopus oryz... 56 8e-13 4
(FK256322) USDA-FP_192285 Asian citrus psyllid midgut (Hemip... 48 9e-13 4
(FK256397) USDA-FP_192360 Asian citrus psyllid midgut (Hemip... 48 9e-13 4
(EE003482) ROE00008468 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4
(EE003441) ROE00008372 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4
(FK256430) USDA-FP_192393 Asian citrus psyllid midgut (Hemip... 48 1e-12 4
(EE001638) ROE00011271 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4
(FK256570) USDA-FP_192533 Asian citrus psyllid midgut (Hemip... 48 1e-12 4
(FK256531) USDA-FP_192494 Asian citrus psyllid midgut (Hemip... 48 1e-12 4
(FK259876) USDA-FP_195839 Asian citrus psyllid midgut (Hemip... 48 1e-12 4
(FK257731) USDA-FP_193694 Asian citrus psyllid midgut (Hemip... 48 1e-12 4
(EE003974) ROE00004076 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4
(EE004362) ROE00003310 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4
(FK259660) USDA-FP_195623 Asian citrus psyllid midgut (Hemip... 48 2e-12 4
(EH432104) NPE00000324 Neocallimastix patriciarum ZAP II cDN... 66 7e-12 2
(DY889802) CeleSEQ6750 Cunninghamella elegans pBluescript (E... 48 7e-12 3
(DY886113) CeleSEQ1638 Cunninghamella elegans pBluescript (E... 48 1e-11 3
(EE007261) ROE00002921 Rhizopus oryzae Company Rhizopus oryz... 48 9e-11 4
(EE002399) ROE00013841 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3
(BI743828) kx53e03.y1 Parastrongyloides trichosuri PA pAMP1 ... 68 2e-10 3
(EE010290) ROE00005630 Rhizopus oryzae Company Rhizopus oryz... 48 2e-10 4
(EE001558) ROE00010710 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3
(EE001979) ROE00011930 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3
(EE010345) ROE00005591 Rhizopus oryzae Company Rhizopus oryz... 48 2e-10 4
(EE003524) ROE00012861 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3
(EE004858) ROE00012810 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3

>(AU284510) Dictyostelium discoideum gamete cDNA clone:FC-BA15, single
read.
Length = 995

Score = 1657 bits (836), Expect = 0.0
Identities = 878/892 (98%)
Strand = Plus / Plus


Query: 166 cacacatacatatacaaaatgggtttcgtcaaagtcgttaaaactaaagcttactacagc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacacatacatatacaaaatgggtttcgtcaaagtcgttaaaactaaagcttactacagc 60


Query: 226 agatatcaagtccaattccgtagaagacgtgaaggtaaaactgattatcaacaaagacac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agatatcaagtccaattccgtagaagacgtgaaggtaaaactgattatcaacaaagacac 120


Query: 286 agattaatcactcaagataagaacaagtacaactcaccaaaatacagacttgttgctcgt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agattaatcactcaagataagaacaagtacaactcaccaaaatacagacttgttgctcgt 180


Query: 346 atcaccaacactgatgttattgctcaagttgtctactctaagattgtcggtgatttcgtc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcaccaacactgatgttattgctcaagttgtctactctaagattgtcggtgatttcgtc 240


Query: 406 ttatgtgcagcttacgctcacgaattaccaagattcggtgtcaaagttggtctcaccaac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttatgtgcagcttacgctcacgaattaccaagattcggtgtcaaagttggtctcaccaac 300


Query: 466 tatgcttcatgttatgctaccggtctcttattagctcgtagattattagccaaattaaaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatgcttcatgttatgctaccggtctcttattagctcgtagattattagccaaattaaaa 360


Query: 526 ttagccgatctctacaaaggtgctgaaaaagttgacggtaaagttttcctcgtcaaacca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttagccgatctctacaaaggtgctgaaaaagttgacggtaaagttttcctcgtcaaacca 420


Query: 586 gtcgacgacaaaccaagaccattcaaagctaatctcgatgttggtctcgctcgtacctca 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcgacgacaaaccaagaccattcaaagctaatctcgatgttggtctcgctcgtacctca 480


Query: 646 actggtgctaaagtctttgctgtcctcaaaggtgctgtcgacggtggtatctacgtccca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 actggtgctaaagtctttgctgtcctcaaaggtgctgtcgacggtggtatctacgtccca 540


Query: 706 cacggtgaaacccgtttcgctggttacaacgctgaaagcaagaaattaaacgctgaaact 765
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cacggtgaaacccgtttcgatggttacaacgctgaaagcaagaaattaaacgctgaaact 600


Query: 766 ctccgtggttacatctttggtaaacacgttgcctcttacatgaccttattacaaactgaa 825
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 601 ctccgtggttacatctttggtaaacacgttgcctattacatgaccttattacaaactgaa 660


Query: 826 gacgaagatgcctacaaaaagatcttctctcaatacatcaaaaacggtgttgctccaaaa 885
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 661 gacgaagattcctacaaaaagatcttctttcaatacatcaaaaacggtgttgctccaaaa 720


Query: 886 gatatcgaaaccatctatgccaacgctcacaaagccatcagagccaacccagccccagct 945
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 721 gatatcgaaaccatctatgccaacgctcacaaagccatcagagccaacccagccccggat 780


Query: 946 gccaaatcaaccaaatcatacaaagatatcaaatccaagaacctcagcaagagaaccctc 1005
||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 781 gccaaataaaccaaataatacaaagatttcaaatccaagaacctcagcaagagaaccctc 840


Query: 1006 aaacaaaagaaagctcgtgttgcttccatcaaagcttcatacaaagctcgtc 1057
||| ||||||||| || | || ||||||||||||||||||||||||||||||
Sbjct: 841 aaaaaaaagaaagttcttttttcttccatcaaagcttcatacaaagctcgtc 892

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,026,874,601
Number of extensions: 56188514
Number of successful extensions: 4344021
Number of sequences better than 10.0: 5269
Length of query: 1169
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1145
Effective length of database: 97,308,875,965
Effective search space: 111418662979925
Effective search space used: 111418662979925
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.13
Homology vs Protein
Query= Contig-U15038-1 (Contig-U15038-1Q) /CSM_Contig/Contig-U15038-1Q.Seq.d
(1169 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54XX3) RecName: Full=60S ribosomal protein L5; 548 e-154
(P22451) RecName: Full=60S ribosomal protein L5; &D10737_1(D107... 324 3e-87
AY769272_1(AY769272|pid:none) Bombyx mori ribosomal protein L5 (... 323 6e-87
BC041227_1(BC041227|pid:none) Xenopus laevis 60S ribosomal prote... 323 7e-87
AK152381_1(AK152381|pid:none) Mus musculus bone marrow macrophag... 322 2e-86
AB464162_1(AB464162|pid:none) Synthetic construct DNA, clone: pF... 321 3e-86
(P47962) RecName: Full=60S ribosomal protein L5; &AK008489_1(AK... 321 3e-86
(P15125) RecName: Full=60S ribosomal protein L5-A; &A33823(A338... 321 3e-86
AK166865_1(AK166865|pid:none) Mus musculus blastocyst blastocyst... 320 5e-86
(Q4R5M0) RecName: Full=60S ribosomal protein L5; &AB169523_1(AB... 320 5e-86
AK222604_1(AK222604|pid:none) Homo sapiens mRNA for ribosomal pr... 320 5e-86
S55912(S55912;PC4210;S50101) ribosomal protein L5, cytosolic - h... 320 6e-86
BC059751_1(BC059751|pid:none) Xenopus tropicalis ribosomal prote... 320 8e-86
(Q9W5R8) RecName: Full=60S ribosomal protein L5; &AE014134_3696... 319 1e-85
(Q58DW5) RecName: Full=60S ribosomal protein L5; 319 1e-85
BT046397_1(BT046397|pid:none) Salmo salar clone ssal-evf-506-137... 318 2e-85
AF401557_1(AF401557|pid:none) Ictalurus punctatus ribosomal prot... 317 4e-85
(Q26481) RecName: Full=60S ribosomal protein L5; &L78668_1(L786... 317 4e-85
BT075631_1(BT075631|pid:none) Osmerus mordax clone omor-eva-516-... 317 5e-85
DQ215730_1(DQ215730|pid:none) Taeniopygia guttata clone 0058P004... 317 7e-85
AJ563456_1(AJ563456|pid:none) Crassostrea gigas partial mRNA for... 316 9e-85
BT073256_1(BT073256|pid:none) Oncorhynchus mykiss clone omyk-evn... 316 9e-85
AB374938_1(AB374938|pid:none) Solea senegalensis RPL5 mRNA for r... 313 7e-84
BT058604_1(BT058604|pid:none) Salmo salar clone Contig2421 60S r... 312 1e-83
BT082462_1(BT082462|pid:none) Anoplopoma fimbria clone afim-evh-... 312 2e-83
FN357831_3(FN357831|pid:none) Schistosoma mansoni genome sequenc... 311 2e-83
EU116892_1(EU116892|pid:none) Barentsia elongata putative riboso... 311 4e-83
BT073366_1(BT073366|pid:none) Oncorhynchus mykiss clone omyk-evn... 311 4e-83
(O65353) RecName: Full=60S ribosomal protein L5; &AF066077_1(AF... 310 5e-83
BT043767_1(BT043767|pid:none) Salmo salar clone HM6_1185 Ribosom... 310 5e-83
BT045782_1(BT045782|pid:none) Salmo salar clone ssal-rgf-531-065... 310 6e-83
BT049720_1(BT049720|pid:none) Salmo salar clone ssal-evf-576-261... 310 8e-83
AY223167_1(AY223167|pid:none) Schistosoma japonicum clone ZZD155... 309 1e-82
BC049035_1(BC049035|pid:none) Danio rerio ribosomal protein L5a,... 308 2e-82
BC071498_1(BC071498|pid:none) Danio rerio ribosomal protein L5b,... 308 2e-82
FN322569_1(FN322569|pid:none) Schistosoma japonicum isolate Anhu... 308 2e-82
FN322564_1(FN322564|pid:none) Schistosoma japonicum isolate Anhu... 307 5e-82
(P49405) RecName: Full=60S ribosomal protein L5; &T22631(T22631... 304 3e-81
BT021482_1(BT021482|pid:none) Bos taurus ribosomal protein L5 (R... 304 3e-81
FJ538194_1(FJ538194|pid:none) Drosophila silvestris ribosomal pr... 303 1e-80
AF002238_1(AF002238|pid:none) Anopheles gambiae ribosomal protei... 301 4e-80
AB246883_1(AB246883|pid:none) Lethenteron japonicum RPL5 mRNA fo... 300 5e-80
FM992694_163(FM992694|pid:none) Candida dubliniensis CD36 chromo... 300 5e-80
AF152472_1(AF152472|pid:none) Myxine glutinosa ribosomal protein... 299 1e-79
AM920428_1157(AM920428|pid:none) Penicillium chrysogenum Wiscons... 298 2e-79
AP006852_166(AP006852|pid:none) Candida albicans genomic DNA, ch... 298 2e-79
AY130399_1(AY130399|pid:none) Branchiostoma lanceolatum ribosoma... 297 6e-79
AY389938_1(AY389938|pid:none) Protopterus dolloi ribosomal prote... 296 9e-79
AE017343_537(AE017343|pid:none) Cryptococcus neoformans var. neo... 295 3e-78
AE016816_308(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 294 5e-78
AP007161_513(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 292 1e-77
AL713629_7(AL713629|pid:none) Aspergillus fumigatus BAC AFA5C11.... 292 2e-77
EF103443_1(EF103443|pid:none) Haliotis discus discus ribosomal p... 291 2e-77
CR382131_913(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 291 3e-77
(Q6JWW5) RecName: Full=60S ribosomal protein L5; &AY292620_1(AY... 290 9e-77
CR382124_280(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 290 9e-77
AY130401_1(AY130401|pid:none) Scyliorhinus canicula ribosomal pr... 288 2e-76
EU558353_1(EU558353|pid:none) Phoronis muelleri putative 60S rib... 287 6e-76
FN392319_660(FN392319|pid:none) Pichia pastoris GS115 chromosome... 286 1e-75
BT052392_1(BT052392|pid:none) Medicago truncatula clone MTYFD_FE... 285 2e-75
CU928178_270(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 284 4e-75
L01796_1(L01796|pid:none) Saccharomyces cerevisiae ribosomal pro... 284 4e-75
FJ655091_1(FJ655091|pid:none) Pectinaria gouldii ribosomal-like ... 283 1e-74
BT087692_1(BT087692|pid:none) Zea mays full-length cDNA clone ZM... 283 1e-74
CP000496_621(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 283 1e-74
(O59953) RecName: Full=60S ribosomal protein L5; AltName: Full=C... 282 1e-74
EF145438_1(EF145438|pid:none) Populus trichocarpa clone WS01124_... 282 2e-74
(Q8LBI1) RecName: Full=60S ribosomal protein L5-1; &AY054161_1(... 281 3e-74
EU964434_1(EU964434|pid:none) Zea mays clone 278897 60S ribosoma... 280 7e-74
CU928168_427(CU928168|pid:none) Kluyveromyces thermotolerans str... 280 7e-74
(A2WXX3) RecName: Full=60S ribosomal protein L5-1; 280 9e-74
(O22608) RecName: Full=60S ribosomal protein L5; &AF028833_1(AF... 280 9e-74
(Q0JGY1) RecName: Full=60S ribosomal protein L5-1; &AK104693_1(... 278 3e-73
AY087197_1(AY087197|pid:none) Arabidopsis thaliana clone 32753 m... 277 5e-73
EF145773_1(EF145773|pid:none) Populus trichocarpa clone WS0113_F... 275 2e-72
CP000081_184(CP000081|pid:none) Leishmania major chromosome 35, ... 273 7e-72
CP000081_183(CP000081|pid:none) Leishmania major chromosome 35, ... 273 9e-72
(Q8L4L4) RecName: Full=60S ribosomal protein L5-2; &AP003316_29... 271 3e-71
AP008207_3350(AP008207|pid:none) Oryza sativa (japonica cultivar... 271 3e-71
AP003316_30(AP003316|pid:none) Oryza sativa Japonica Group genom... 270 6e-71
S39486(S39486)ribosomal protein L5 - rice 266 8e-70
(P52822) RecName: Full=60S ribosomal protein L5-A; &CU329670_14... 264 4e-69
(Q5EY89) RecName: Full=60S ribosomal protein L5; &AY588943_1(AY... 262 2e-68
(Q4UDE7) RecName: Full=60S ribosomal protein L5; &CR940348_867(... 259 2e-67
(Q4N655) RecName: Full=60S ribosomal protein L5; 259 2e-67
AB089490_1(AB089490|pid:none) Giardia intestinalis gene for ribo... 258 2e-67
EU366501_1(EU366501|pid:none) Taenia solium Ts5 protein mRNA, pa... 256 1e-66
CP000594_111(CP000594|pid:none) Ostreococcus lucimarinus CCE9901... 253 7e-66
U48270_1(U48270|pid:none) Schizosaccharomyces pombe ribosomal pr... 252 2e-65
CR954215_117(CR954215|pid:none) Ostreococcus tauri strain OTTH05... 250 6e-65
CP001325_709(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 244 4e-63
EU930206_1(EU930206|pid:none) Simulium vittatum clone SV-114 60S... 242 2e-62
EU116846_1(EU116846|pid:none) Sipunculus nudus putative ribosoma... 241 3e-62
AM910995_254(AM910995|pid:none) Plasmodium knowlesi strain H chr... 239 1e-61
EU558307_1(EU558307|pid:none) Novocrania anomala putative 60S ri... 236 2e-60
AF227803_1(AF227803|pid:none) Ictalurus punctatus ribosomal prot... 233 1e-59
AB089486_1(AB089486|pid:none) Trichomonas vaginalis gene for rib... 229 1e-58
EZ000569_1(EZ000569|pid:none) TSA: Culex tarsalis Ctar-553 60S r... 228 4e-58
AE014134_3698(AE014134|pid:none) Drosophila melanogaster chromos... 220 9e-56
BT011515_1(BT011515|pid:none) Drosophila melanogaster SD13191 fu... 217 7e-55
AJ843088_1(AJ843088|pid:none) Platichthys flesus partial mRNA fo... 215 2e-54
BT075308_1(BT075308|pid:none) Osmerus mordax clone omor-rgc-512-... 214 5e-54
AY130400_1(AY130400|pid:none) Petromyzon marinus ribosomal prote... 210 9e-53
EU124954_1(EU124954|pid:none) Arenicola marina ribosomal protein... 208 3e-52
AY096006_1(AY096006|pid:none) Branchiostoma belcheri tsingtaunes... 207 8e-52
EU302529_1(EU302529|pid:none) Lineus viridis ribosomal protein r... 199 2e-49
AL590446_90(AL590446|pid:none) chromosome VI of strain GB-M1 of ... 197 5e-49
DQ187375_1(DQ187375|pid:none) Theileria sp. CAAS-2005 clone 23 u... 180 1e-43
AB002734_1(AB002734|pid:none) Entamoeba histolytica mRNA for rib... 177 6e-43
DQ206526_1(DQ206526|pid:none) Suberites fuscus isolate TOA21 rib... 176 1e-42
AB002733_1(AB002733|pid:none) Entamoeba histolytica mRNA for rib... 172 2e-41
DQ206472_1(DQ206472|pid:none) Platynereis dumerilii isolate TOA2... 163 1e-38
BC001882_1(BC001882|pid:none) Homo sapiens ribosomal protein L5,... 158 4e-37
BT050301_1(BT050301|pid:none) Salmo salar clone ssal-eve-532-097... 157 7e-37
EF675776_1(EF675776|pid:none) Artemia franciscana ribosomal prot... 145 4e-33
U76609_1(U76609|pid:none) Human ribosomal L5 protein mRNA, parti... 140 7e-32
AK168317_1(AK168317|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 128 4e-28
AY713111_1(AY713111|pid:none) Ithomia salapia derasa voucher 892... 124 5e-27
AY713096_1(AY713096|pid:none) Ithomia eleonora voucher 9114 ribo... 123 1e-26
AY713092_1(AY713092|pid:none) Ithomia cleora voucher 8904 riboso... 121 5e-26
AY713099_1(AY713099|pid:none) Ithomia heraldica heraldica vouche... 121 5e-26
(A4WMD6) RecName: Full=50S ribosomal protein L18P; &CP000660_19... 118 4e-25
AY713093_1(AY713093|pid:none) Ithomia diasia hippocrenis voucher... 117 8e-25
(Q8ZVV7) RecName: Full=50S ribosomal protein L18P; &AE009441_14... 116 1e-24
AJ010592_153(AJ010592|pid:none) Guillardia theta DNA for complet... 115 4e-24
AY149443_1(AY149443|pid:none) Euprymna scolopes 60S ribosomal pr... 115 4e-24
(A1RVN4) RecName: Full=50S ribosomal protein L18P; &CP000504_18... 114 5e-24
(B1Y8V2) RecName: Full=50S ribosomal protein L18P; &CP001014_12... 114 5e-24
(A6VH04) RecName: Full=50S ribosomal protein L18P; &CP000745_65... 113 1e-23
(A6UWV7) RecName: Full=50S ribosomal protein L18P; &CP000743_13... 112 3e-23
(A5UL69) RecName: Full=50S ribosomal protein L18P; &CP000678_74... 112 3e-23
AM709797_1(AM709797|pid:none) Heliconius melpomene aglaope parti... 112 3e-23
(P14033) RecName: Full=50S ribosomal protein L18P; &R5MX18(S056... 111 4e-23
(A4FWA2) RecName: Full=50S ribosomal protein L18P; &CP000609_16... 111 4e-23
(A6UQ63) RecName: Full=50S ribosomal protein L18P; &CP000742_72... 111 4e-23
(P54044) RecName: Full=50S ribosomal protein L18P; &B64359(B643... 111 4e-23
AM709798_1(AM709798|pid:none) Heliconius melpomene aglaope parti... 110 7e-23
AY713098_1(AY713098|pid:none) Ithomia hyala n. ssp. RM-2004 vouc... 110 1e-22
(A3MSJ3) RecName: Full=50S ribosomal protein L18P; &CP000561_17... 108 3e-22
AY713113_1(AY713113|pid:none) Ithomia iphianassa n. ssp. RM-2005... 107 1e-21
(A8M9I3) RecName: Full=50S ribosomal protein L18P; &CP000852_10... 105 4e-21
(Q74MJ4) RecName: Full=50S ribosomal protein L18P; &AE017199_75... 101 4e-20
GM016257_137(GM016257|pid:none) Sequence 1087 from Patent EP1923... 100 8e-20
(B6YSN3) RecName: Full=50S ribosomal protein L18P; &CP000855_87... 100 1e-19
(A2BMD8) RecName: Full=50S ribosomal protein L18P; &CP000493_12... 100 2e-19
(Q975J9) RecName: Full=50S ribosomal protein L18P; &BA000023_46... 100 2e-19
CP001398_1984(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 99 3e-19
(O59438) RecName: Full=50S ribosomal protein L18P; 97 1e-18
(Q2NFX6) RecName: Full=50S ribosomal protein L18P; &CP000102_85... 96 3e-18
(B1L785) RecName: Full=50S ribosomal protein L18P; &CP000968_15... 95 4e-18
(Q9HH80) RecName: Full=50S ribosomal protein L18P; AltName: Full... 93 2e-17
(A3CT16) RecName: Full=50S ribosomal protein L18P; &CP000562_58... 91 6e-17
(A3DNC6) RecName: Full=50S ribosomal protein L18P; &CP000575_10... 91 8e-17
EU125007_1(EU125007|pid:none) Eurythoe complanata ribosomal prot... 91 8e-17
(Q0W1W9) RecName: Full=50S ribosomal protein L18P; &AM114193_63... 91 1e-16
(Q9UX88) RecName: Full=50S ribosomal protein L18P; &A99218(A992... 91 1e-16
AM048993_1(AM048993|pid:none) Scarabaeus laticollis partial mRNA... 89 3e-16
CP001404_1301(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 88 7e-16
CP001399_1387(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 87 1e-15
S50100(S50100;S51088)ribosomal protein L5, cytosolic - mouse (fr... 86 2e-15
(B0R675) RecName: Full=50S ribosomal protein L18P; &(P50562) Re... 84 7e-15
CP001365_2399(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 83 2e-14
(A0B9V1) RecName: Full=50S ribosomal protein L18P; &CP000477_16... 81 6e-14
(P19949) RecName: Full=60S ribosomal protein L5; Flags: Fragments; 81 8e-14
(Q18GG8) RecName: Full=50S ribosomal protein L18P; &AM180088_18... 80 1e-13
S00178(S00178)ribosomal protein L5 - rabbit (fragment) 80 1e-13
(Q3IMW9) RecName: Full=50S ribosomal protein L18P; &CR936257_24... 79 3e-13
(Q12ZT2) RecName: Full=50S ribosomal protein L18P; &CP000300_20... 79 3e-13
(A8AC01) RecName: Full=50S ribosomal protein L18P; &CP000816_12... 77 1e-12
X83590_1(X83590|pid:none) M.musculus mRNA for ribosomal protein ... 77 2e-12
AY714818_5(AY714818|pid:none) Uncultured archaeon GZfos12E2 clon... 72 5e-11
DQ158858_64(DQ158858|pid:none) Bigelowiella natans nucleomorph c... 71 6e-11
AY714857_18(AY714857|pid:none) Uncultured archaeon GZfos33E1 clo... 70 2e-10
(Q8TRS8) RecName: Full=50S ribosomal protein L18P; &AE010299_10... 69 4e-10
(Q8PV31) RecName: Full=50S ribosomal protein L18P; 68 7e-10
(Q97BV7) RecName: Full=50S ribosomal protein L18P; &BA000011_34... 67 9e-10
DQ156348_24(DQ156348|pid:none) Uncultured marine group II euryar... 67 2e-09
EU686643_3(EU686643|pid:none) Uncultured marine group II euryarc... 66 3e-09
EU686639_21(EU686639|pid:none) Uncultured marine group II euryar... 65 4e-09
(Q9HIS6) RecName: Full=50S ribosomal protein L18P; &AL445067_23... 63 2e-08
AY534910_32(AY534910|pid:none) Uncultured marine group II euryar... 60 1e-07
EF144502_1(EF144502|pid:none) Populus trichocarpa clone PX0019_N... 47 0.001
AB010699_3(AB010699|pid:none) Arabidopsis thaliana genomic DNA, ... 47 0.002
(Q6L1A8) RecName: Full=50S ribosomal protein L18P; &AE017261_65... 44 0.011
EU686616_34(EU686616|pid:none) Uncultured marine group II euryar... 42 0.032
CP000548_1550(CP000548|pid:none) Burkholderia mallei NCTC 10247 ... 42 0.055
CP000526_2229(CP000526|pid:none) Burkholderia mallei SAVP1 chrom... 42 0.055
AB061848_1(AB061848|pid:none) Homo sapiens RPL5 gene for ribosom... 40 0.12
CP000866_394(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 40 0.21
BC141370_1(BC141370|pid:none) Mus musculus PDZ domain containing... 38 0.61
AP002039_6(AP002039|pid:none) Arabidopsis thaliana genomic DNA, ... 38 0.61
BT002039_1(BT002039|pid:none) Arabidopsis thaliana Unknown prote... 38 0.61
CP000010_645(CP000010|pid:none) Burkholderia mallei ATCC 23344 c... 38 0.79
CR382131_904(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 37 1.0
CU633871_38(CU633871|pid:none) Podospora anserina genomic DNA ch... 37 1.8
AY054648_1(AY054648|pid:none) Arabidopsis thaliana periaxin-like... 36 2.3
AL353994_28(AL353994|pid:none) Arabidopsis thaliana DNA chromoso... 36 2.3
(Q29EQ3) RecName: Full=PHD finger protein rhinoceros; 36 3.0
AM889285_1765(AM889285|pid:none) Gluconacetobacter diazotrophicu... 35 3.9
CU928175_408(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 35 3.9
AM269982_12(AM269982|pid:none) Aspergillus niger contig An01c035... 35 5.1
T16089(T16089) hypothetical protein F18C5.5 - Caenorhabditis ele... 35 5.1
CP001336_914(CP001336|pid:none) Desulfitobacterium hafniense DCB... 35 5.1
AF022984_3(AF022984|pid:none) Caenorhabditis elegans cosmid ZK48... 35 5.1
CP000806_607(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul... 35 6.7
CP000123_285(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 35 6.7
AF007880_1(AF007880|pid:none) Oryctolagus cuniculus ribosomal pr... 35 6.7
AM450519_4(AM450519|pid:none) Vitis vinifera contig VV78X277211.... 35 6.7
AL162351_11(AL162351|pid:none) Arabidopsis thaliana DNA chromoso... 34 8.8

>(Q54XX3) RecName: Full=60S ribosomal protein L5;
Length = 292

Score = 548 bits (1411), Expect = e-154
Identities = 278/292 (95%), Positives = 278/292 (95%)
Frame = +1

Query: 184 MGFVKVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDV 363
MGFVKVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDV
Sbjct: 1 MGFVKVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDV 60

Query: 364 IAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGXXXXXXXXXXXXXXDLYK 543
IAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATG DLYK
Sbjct: 61 IAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYK 120

Query: 544 GAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRF 723
GAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRF
Sbjct: 121 GAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRF 180

Query: 724 AGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIY 903
AGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIY
Sbjct: 181 AGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIY 240

Query: 904 ANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARVASIKASYKARL 1059
ANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARVASIKASYKARL
Sbjct: 241 ANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARVASIKASYKARL 292

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,586,836,799
Number of extensions: 28506597
Number of successful extensions: 81798
Number of sequences better than 10.0: 209
Number of HSP's gapped: 80682
Number of HSP's successfully gapped: 252
Length of query: 389
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 259
Effective length of database: 630,428,194
Effective search space: 163280902246
Effective search space used: 163280902246
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.74 gvh: 0.19 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.50 mip: 0.06
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
36.0 %: cytoplasmic
16.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: extracellular, including cell wall

>> prediction for Contig-U15038-1 is mit

VS (DIR, S) 6
VH (FL, L) 0
VF (FL, S) 7
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 10
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 1
FC (DIR, S) 5
FC-IC (SUB) 0