Contig-U15038-1 |
Contig ID |
Contig-U15038-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1169 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
1032179 |
End point |
1031133 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
30 |
Number of EST |
32 |
Link to clone list |
U15038 |
List of clone(s) |
est1=VFH104F,1,487 est2=VFG859E,154,1115 est3=VFJ474F,155,702 est4=VFK383F,158,763 est5=VFK483F,158,693 est6=AHK819E,165,1114 est7=FC-AK01E,166,1161 est8=FC-BA15E,166,1161 est9=VSD336E,166,1115 est10=VFN413E,167,1108 est11=SLA690E,188,1163 est12=VFI286Z,386,1099 est13=SLB250Z,427,1119 est14=VSC396Z,517,1149 est15=FCL-AD13Z,518,1169 est16=VSA140Z,541,1156 est17=VSD896Z,550,1115 est18=FC-BA05Z,599,1148 est19=SLF471Z,603,1134 est20=SLE137Z,611,1138 est21=VSA160Z,693,1155 est22=SLI724Z,699,1124 est23=FC-AW15Z,727,1161 est24=SLA707Z,763,1125 est25=SLF771Z,821,1123 est26=VSF268E,826,1101 est27=VFJ474Z,833,1149 est28=VFK383Z,834,1051 est29=SLK191Z,860,1118 est30=SLA831E,992,1136 est31=SLK381F,993,1152 est32=SLK381Z,995,1152
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.10 |
Homology vs DNA |
Query= Contig-U15038-1 (Contig-U15038-1Q) /CSM_Contig/Contig-U15038-1Q.Seq.d (1169 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU284510) Dictyostelium discoideum gamete cDNA clone:FC-BA1... 1657 0.0 1 (AU060248) Dictyostelium discoideum slug cDNA, clone SLA690. 1348 0.0 1 (BJ435438) Dictyostelium discoideum cDNA clone:ddv27j04, 3' ... 1332 0.0 1 (BJ432169) Dictyostelium discoideum cDNA clone:ddv17k22, 3' ... 1332 0.0 1 (BJ431546) Dictyostelium discoideum cDNA clone:ddv14f16, 3' ... 1328 0.0 1 (BJ353965) Dictyostelium discoideum cDNA clone:dda52f06, 3' ... 1285 0.0 1 (AU263864) Dictyostelium discoideum vegetative cDNA clone:VS... 1211 0.0 1 (BJ415207) Dictyostelium discoideum cDNA clone:ddv21f21, 5' ... 1201 0.0 1 (C23694) Dictyostelium discoideum gamete cDNA, clone FC-AK01. 1164 0.0 2 (BJ335924) Dictyostelium discoideum cDNA clone:dda52f06, 5' ... 1088 0.0 1 (AU263863) Dictyostelium discoideum vegetative cDNA clone:VS... 1082 0.0 1 (BJ414602) Dictyostelium discoideum cDNA clone:ddv19d20, 5' ... 1078 0.0 1 (AU262537) Dictyostelium discoideum vegetative cDNA clone:VS... 1065 0.0 1 (BJ415208) Dictyostelium discoideum cDNA clone:ddv21f22, 5' ... 1063 0.0 1 (AU261306) Dictyostelium discoideum vegetative cDNA clone:VS... 1025 0.0 1 (AU033633) Dictyostelium discoideum slug cDNA, clone SLB250. 985 0.0 2 (AU264711) Dictyostelium discoideum vegetative cDNA clone:VS... 995 0.0 1 (BJ413196) Dictyostelium discoideum cDNA clone:ddv14f16, 5' ... 975 0.0 1 (BJ413318) Dictyostelium discoideum cDNA clone:ddv15g01, 5' ... 965 0.0 1 (AU284502) Dictyostelium discoideum gamete cDNA clone:FC-BA0... 912 0.0 1 (AU034656) Dictyostelium discoideum slug cDNA, clone SLE137. 882 0.0 1 (AU052994) Dictyostelium discoideum slug cDNA, clone SLF471. 850 0.0 2 (BJ416735) Dictyostelium discoideum cDNA clone:ddv27j04, 5' ... 791 0.0 1 (AU261319) Dictyostelium discoideum vegetative cDNA clone:VS... 724 0.0 1 (AU053475) Dictyostelium discoideum slug cDNA, clone SLI724. 561 0.0 2 (AU284453) Dictyostelium discoideum gamete cDNA clone:FC-AW1... 603 e-168 1 (AU033385) Dictyostelium discoideum slug cDNA, clone SLA707. 539 e-149 1 (AU053129) Dictyostelium discoideum slug cDNA, clone SLF771. 472 e-128 1 (AU264969) Dictyostelium discoideum vegetative cDNA clone:VS... 456 e-124 1 (AU053937) Dictyostelium discoideum slug cDNA, clone SLK191. 394 e-105 1 (AU033373) Dictyostelium discoideum slug cDNA, clone SLA690. 391 e-104 1 (AU264968) Dictyostelium discoideum vegetative cDNA clone:VS... 373 1e-98 1 (BJ410192) Dictyostelium discoideum cDNA clone:ddv11g14, 5' ... 305 2e-78 1 (BJ325020) Dictyostelium discoideum cDNA clone:dda9c11, 5' e... 274 7e-69 1 (BJ432779) Dictyostelium discoideum cDNA clone:ddv19d20, 3' ... 204 5e-48 1 (BJ433422) Dictyostelium discoideum cDNA clone:ddv21f21, 3' ... 176 1e-39 1 (BJ394909) Dictyostelium discoideum cDNA clone:dds36o19, 5' ... 159 3e-34 1 (AU033442) Dictyostelium discoideum slug cDNA, clone SLA831. 133 2e-26 1 (EH431618) NPE00000901 Neocallimastix patriciarum ZAP II cDN... 82 3e-26 3 (AU060552) Dictyostelium discoideum slug cDNA, clone SLK381. 131 7e-26 1 (EH431179) NPE00000191 Neocallimastix patriciarum ZAP II cDN... 82 4e-25 3 (AU053995) Dictyostelium discoideum slug cDNA, clone SLK381. 127 1e-24 1 (AU266656) Dictyostelium discoideum vegetative cDNA clone:VS... 101 3e-20 2 (EH432077) NPE00000508 Neocallimastix patriciarum ZAP II cDN... 60 2e-16 3 (EC130565) HVE00004448 Hartmannella vermiformis Regular Smal... 72 4e-16 2 (EH431249) NPE00000023 Neocallimastix patriciarum ZAP II cDN... 46 1e-15 4 (DY884979) CeleSEQ141 Cunninghamella elegans pBluescript (Ec... 60 2e-15 3 (AP006852) Candida albicans genomic DNA, chromosome 7, compl... 48 2e-15 3 (DY885182) CeleSEQ384 Cunninghamella elegans pBluescript (Ec... 60 2e-15 3 (DY889871) CeleSEQ6836 Cunninghamella elegans pBluescript (E... 60 3e-15 3 (DY889347) CeleSEQ10864 Cunninghamella elegans pBluescript (... 60 3e-15 3 (DY893076) CeleSEQ12251 Cunninghamella elegans pBluescript (... 60 3e-15 3 (DY889985) CeleSEQ6995 Cunninghamella elegans pBluescript (E... 60 3e-15 3 (AX489176) Sequence 6476 from Patent WO02053728. 48 3e-15 3 (EH432045) NPE00000570 Neocallimastix patriciarum ZAP II cDN... 54 3e-15 3 (AR550536) Sequence 5667 from patent US 6747137. 48 3e-15 3 (DY892007) CeleSEQ8893 Cunninghamella elegans pBluescript (E... 60 3e-15 3 (DY885855) CeleSEQ1313 Cunninghamella elegans pBluescript (E... 60 3e-15 3 (DY886410) CeleSEQ2058 Cunninghamella elegans pBluescript (E... 60 3e-15 3 (DY892259) CeleSEQ9765 Cunninghamella elegans pBluescript (E... 60 3e-15 3 (DY890284) CeleSEQ9221 Cunninghamella elegans pBluescript (E... 60 3e-15 3 (DY891961) CeleSEQ8735 Cunninghamella elegans pBluescript (E... 60 3e-15 3 (DY889696) CeleSEQ11671 Cunninghamella elegans pBluescript (... 60 4e-15 3 (DY889391) CeleSEQ10918 Cunninghamella elegans pBluescript (... 60 4e-15 3 (DY885327) CeleSEQ581 Cunninghamella elegans pBluescript (Ec... 60 4e-15 3 (DY886439) CeleSEQ2096 Cunninghamella elegans pBluescript (E... 60 4e-15 3 (DY886850) CeleSEQ2660 Cunninghamella elegans pBluescript (E... 60 4e-15 3 (DY892083) CeleSEQ8991 Cunninghamella elegans pBluescript (E... 60 4e-15 3 (DY887375) CeleSEQ3347 Cunninghamella elegans pBluescript (E... 60 4e-15 3 (EE009523) ROE00005970 Rhizopus oryzae Company Rhizopus oryz... 48 5e-14 5 (CK151006) CsmgEST02483 Culicoides sonorensis female serum-f... 40 5e-14 5 (EE010229) ROE00001384 Rhizopus oryzae Company Rhizopus oryz... 48 6e-14 5 (DY888380) CeleSEQ5299 Cunninghamella elegans pBluescript (E... 52 6e-13 3 (EE008321) ROE00007282 Rhizopus oryzae Company Rhizopus oryz... 56 6e-13 4 (EE009909) ROE00000251 Rhizopus oryzae Company Rhizopus oryz... 56 8e-13 4 (FK256322) USDA-FP_192285 Asian citrus psyllid midgut (Hemip... 48 9e-13 4 (FK256397) USDA-FP_192360 Asian citrus psyllid midgut (Hemip... 48 9e-13 4 (EE003482) ROE00008468 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4 (EE003441) ROE00008372 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4 (FK256430) USDA-FP_192393 Asian citrus psyllid midgut (Hemip... 48 1e-12 4 (EE001638) ROE00011271 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4 (FK256570) USDA-FP_192533 Asian citrus psyllid midgut (Hemip... 48 1e-12 4 (FK256531) USDA-FP_192494 Asian citrus psyllid midgut (Hemip... 48 1e-12 4 (FK259876) USDA-FP_195839 Asian citrus psyllid midgut (Hemip... 48 1e-12 4 (FK257731) USDA-FP_193694 Asian citrus psyllid midgut (Hemip... 48 1e-12 4 (EE003974) ROE00004076 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4 (EE004362) ROE00003310 Rhizopus oryzae Company Rhizopus oryz... 48 1e-12 4 (FK259660) USDA-FP_195623 Asian citrus psyllid midgut (Hemip... 48 2e-12 4 (EH432104) NPE00000324 Neocallimastix patriciarum ZAP II cDN... 66 7e-12 2 (DY889802) CeleSEQ6750 Cunninghamella elegans pBluescript (E... 48 7e-12 3 (DY886113) CeleSEQ1638 Cunninghamella elegans pBluescript (E... 48 1e-11 3 (EE007261) ROE00002921 Rhizopus oryzae Company Rhizopus oryz... 48 9e-11 4 (EE002399) ROE00013841 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3 (BI743828) kx53e03.y1 Parastrongyloides trichosuri PA pAMP1 ... 68 2e-10 3 (EE010290) ROE00005630 Rhizopus oryzae Company Rhizopus oryz... 48 2e-10 4 (EE001558) ROE00010710 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3 (EE001979) ROE00011930 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3 (EE010345) ROE00005591 Rhizopus oryzae Company Rhizopus oryz... 48 2e-10 4 (EE003524) ROE00012861 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3 (EE004858) ROE00012810 Rhizopus oryzae Company Rhizopus oryz... 56 2e-10 3
>(AU284510) Dictyostelium discoideum gamete cDNA clone:FC-BA15, single read. Length = 995
Score = 1657 bits (836), Expect = 0.0 Identities = 878/892 (98%) Strand = Plus / Plus
Query: 166 cacacatacatatacaaaatgggtttcgtcaaagtcgttaaaactaaagcttactacagc 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cacacatacatatacaaaatgggtttcgtcaaagtcgttaaaactaaagcttactacagc 60
Query: 226 agatatcaagtccaattccgtagaagacgtgaaggtaaaactgattatcaacaaagacac 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 agatatcaagtccaattccgtagaagacgtgaaggtaaaactgattatcaacaaagacac 120
Query: 286 agattaatcactcaagataagaacaagtacaactcaccaaaatacagacttgttgctcgt 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 agattaatcactcaagataagaacaagtacaactcaccaaaatacagacttgttgctcgt 180
Query: 346 atcaccaacactgatgttattgctcaagttgtctactctaagattgtcggtgatttcgtc 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atcaccaacactgatgttattgctcaagttgtctactctaagattgtcggtgatttcgtc 240
Query: 406 ttatgtgcagcttacgctcacgaattaccaagattcggtgtcaaagttggtctcaccaac 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ttatgtgcagcttacgctcacgaattaccaagattcggtgtcaaagttggtctcaccaac 300
Query: 466 tatgcttcatgttatgctaccggtctcttattagctcgtagattattagccaaattaaaa 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tatgcttcatgttatgctaccggtctcttattagctcgtagattattagccaaattaaaa 360
Query: 526 ttagccgatctctacaaaggtgctgaaaaagttgacggtaaagttttcctcgtcaaacca 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ttagccgatctctacaaaggtgctgaaaaagttgacggtaaagttttcctcgtcaaacca 420
Query: 586 gtcgacgacaaaccaagaccattcaaagctaatctcgatgttggtctcgctcgtacctca 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gtcgacgacaaaccaagaccattcaaagctaatctcgatgttggtctcgctcgtacctca 480
Query: 646 actggtgctaaagtctttgctgtcctcaaaggtgctgtcgacggtggtatctacgtccca 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 actggtgctaaagtctttgctgtcctcaaaggtgctgtcgacggtggtatctacgtccca 540
Query: 706 cacggtgaaacccgtttcgctggttacaacgctgaaagcaagaaattaaacgctgaaact 765 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 541 cacggtgaaacccgtttcgatggttacaacgctgaaagcaagaaattaaacgctgaaact 600
Query: 766 ctccgtggttacatctttggtaaacacgttgcctcttacatgaccttattacaaactgaa 825 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 601 ctccgtggttacatctttggtaaacacgttgcctattacatgaccttattacaaactgaa 660
Query: 826 gacgaagatgcctacaaaaagatcttctctcaatacatcaaaaacggtgttgctccaaaa 885 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 661 gacgaagattcctacaaaaagatcttctttcaatacatcaaaaacggtgttgctccaaaa 720
Query: 886 gatatcgaaaccatctatgccaacgctcacaaagccatcagagccaacccagccccagct 945 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 721 gatatcgaaaccatctatgccaacgctcacaaagccatcagagccaacccagccccggat 780
Query: 946 gccaaatcaaccaaatcatacaaagatatcaaatccaagaacctcagcaagagaaccctc 1005 ||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct: 781 gccaaataaaccaaataatacaaagatttcaaatccaagaacctcagcaagagaaccctc 840
Query: 1006 aaacaaaagaaagctcgtgttgcttccatcaaagcttcatacaaagctcgtc 1057 ||| ||||||||| || | || |||||||||||||||||||||||||||||| Sbjct: 841 aaaaaaaagaaagttcttttttcttccatcaaagcttcatacaaagctcgtc 892
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,026,874,601 Number of extensions: 56188514 Number of successful extensions: 4344021 Number of sequences better than 10.0: 5269 Length of query: 1169 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1145 Effective length of database: 97,308,875,965 Effective search space: 111418662979925 Effective search space used: 111418662979925 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.13 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
6 |
VH (FL, L) |
0 |
VF (FL, S) |
7 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
10 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
1 |
FC (DIR, S) |
5 |
FC-IC (SUB) |
0 |