>Contig-U02886-1 (Contig-U02886-1Q) /CSM_Contig/Contig-U02886-1Q.Seq.d
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAANGGGGGNNNTTTTTTTTTTNNNGGGGGGGGGGGGGNNNTTTTTTTT
TTTTAAAAAAAAANCCCCCCCCCCCCCCCCCCNGNNNNAAAAA

est1=AFJ868F,1,194

KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKXGXXFFXXGGGGXFFFFKKKXPPPPP
XXXK

Frame A:
kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkxggxfffxggggxxfff*kkxppppp
pxxk


Frame B:
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKXGXXFFXXGGGGXFFFFKKKXPPPPP
XXXK


Frame C:
kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkxgxfffxxggggxffflkkxpppppp
xxk

Query= Contig-U02886-1 (Contig-U02886-1Q)
/CSM_Contig/Contig-U02886-1Q.Seq.d
         (193 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


 ***** No hits found ******

  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 6905
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 193
length of database: 5,674,871
effective HSP length: 15
effective length of query: 178
effective length of database: 5,571,296
effective search space: 991690688
effective search space used: 991690688
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U02886-1 (Contig-U02886-1Q) /CSM_Contig/Contig-U02886-1Q.Seq.d
         (193 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 193
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 170
Effective length of database: 99,442,330,388
Effective search space: 16905196165960
Effective search space used: 16905196165960
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U02886-1 (Contig-U02886-1Q) /CSM_Contig/Contig-U02886-1Q.Seq.d
         (193 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 39,960,960
Number of extensions: 318520
Number of successful extensions: 621
Number of sequences better than 10.0: 0
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 0
Length of query: 64
Length of database: 1,051,180,864
Length adjustment: 36
Effective length of query: 28
Effective length of database: 934,664,740
Effective search space: 26170612720
Effective search space used: 26170612720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

 psg: 0.03  gvh: 0.41  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 3.79  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U02886-1 is nuc