| Contig-U15013-1 |
| Contig ID |
Contig-U15013-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1479 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
2705244 |
| End point |
2706656 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
12 |
| Number of EST |
17 |
| Link to clone list |
U15013 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 1. 9 |
| Homology vs DNA |
Query= Contig-U15013-1 (Contig-U15013-1Q) /CSM_Contig/Contig-U15013-1Q.Seq.d
(1397 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ431924) Dictyostelium discoideum cDNA clone:ddv17e05, 3' ... 1350 0.0 1
(BJ419520) Dictyostelium discoideum cDNA clone:ddv36i11, 5' ... 1342 0.0 1
(BJ416673) Dictyostelium discoideum cDNA clone:ddv26m03, 5' ... 1336 0.0 1
(BJ438101) Dictyostelium discoideum cDNA clone:ddv36i11, 3' ... 1253 0.0 1
(BJ330152) Dictyostelium discoideum cDNA clone:dda27e17, 5' ... 1245 0.0 1
(BJ327659) Dictyostelium discoideum cDNA clone:dda21e10, 5' ... 1201 0.0 1
(BJ413812) Dictyostelium discoideum cDNA clone:ddv17e05, 5' ... 1136 0.0 1
(BJ414037) Dictyostelium discoideum cDNA clone:ddv17h20, 5' ... 1122 0.0 1
(BJ419521) Dictyostelium discoideum cDNA clone:ddv36i12, 5' ... 672 0.0 3
(BJ413631) Dictyostelium discoideum cDNA clone:ddv16n10, 5' ... 993 0.0 2
(BJ329279) Dictyostelium discoideum cDNA clone:dda24m09, 5' ... 950 0.0 1
(BJ328937) Dictyostelium discoideum cDNA clone:dda30l05, 5' ... 898 0.0 1
(AU053888) Dictyostelium discoideum slug cDNA, clone SLJ873. 426 e-119 2
(BJ438102) Dictyostelium discoideum cDNA clone:ddv36i12, 3' ... 343 e-117 2
(AU053154) Dictyostelium discoideum slug cDNA, clone SLF829. 365 e-101 2
(AU060483) Dictyostelium discoideum slug cDNA, clone SLJ873. 323 1e-83 1
(AU266980) Dictyostelium discoideum vegetative cDNA clone:VS... 188 4e-48 2
(AU266981) Dictyostelium discoideum vegetative cDNA clone:VS... 133 2e-26 1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 0.008 19
(AE017263) Mesoplasma florum L1 complete genome. 32 0.042 22
(CO499422) G.h.fbr-sw08812 G.h.fbr-sw Gossypium hirsutum cDN... 50 0.23 1
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g... 38 0.74 23
(AC177331) Strongylocentrotus purpuratus clone R3-46K17, WOR... 44 0.77 8
(AX344939) Sequence 10 from Patent WO0200928. 48 0.90 1
(AC106084) Rattus norvegicus clone CH230-121C20, *** SEQUENC... 48 0.90 1
(AC005172) Homo sapiens chromosome 4 clone B320H23 map 4q25,... 34 1.9 7
(AL446586) Paramecium tetraurelia sequence M07G09r of the en... 38 2.4 2
(CT443822) Sus scrofa genomic clone CH242-518I15, genomic su... 34 2.4 2
(CT188861) Sus scrofa genomic clone PigE-74P20, genomic surv... 34 2.4 2
(AC020698) Homo sapiens BAC clone RP11-45F23 from 4, complet... 36 2.9 5
(BW158625) Ciona intestinalis cDNA, clone:rcigd035f22, 3' en... 44 3.0 2
(AC181168) Strongylocentrotus purpuratus clone R3-16A17, WOR... 38 3.1 7
(FK095909) XABT145916.g1 Gateway compatible cien cDNA librar... 44 3.3 2
(BW166202) Ciona intestinalis cDNA, clone:rcinc011e21, 3' en... 44 3.3 2
(AC078993) Homo sapiens Xp BAC RP11-431J24 (Roswell Park Can... 38 3.3 6
(BW171115) Ciona intestinalis cDNA, clone:rcinc013c21, 3' en... 44 3.5 2
(BW472639) Ciona intestinalis cDNA, clone:cijv012b05, 3'end,... 44 3.5 2
(BW173480) Ciona intestinalis cDNA, clone:rcinc027d17, 3' en... 44 3.6 2
(BV347825) S230P6171RC11.T0 Rottweiler Canis familiaris STS ... 46 3.6 1
(AL133320) Human DNA sequence from clone RP4-547N15 on chrom... 46 3.6 1
(AC090701) Homo sapiens chromosome 18, clone RP11-810M21, co... 46 3.6 1
(AC007948) Genomic sequence of Homo sapiens clone R417F14A f... 46 3.6 1
(AC007631) Genomic sequence of Homo sapiens clone R145D03A f... 46 3.6 1
(AC158039) Bos taurus clone CH240-64D19, WORKING DRAFT SEQUE... 46 3.6 1
(AP001589) Homo sapiens genomic DNA, chromosome 18q22 clone:... 46 3.6 1
(AP001568) Homo sapiens genomic DNA, chromosome 18q22 clone:... 46 3.6 1
(AC182844) Bos taurus clone CH240-329B4, WORKING DRAFT SEQUE... 46 3.6 1
(AC182496) Bos taurus clone CH240-113D20, WORKING DRAFT SEQU... 46 3.6 1
(AC173862) Bos taurus clone CH240-100C16, WORKING DRAFT SEQU... 46 3.6 1
(EL477452) CHUL5649.b1_A22.ab1 CHU(LMS) puzzle sunflower Hel... 46 3.6 1
(EB290709) CNSN01-F-012778-501 Normalized CNS library (juven... 46 3.6 1
(DT088043) JGI_ANNK1593.rev ANNK Pimephales promelas Whole (... 46 3.6 1
(CK324443) ACA_CNS_N-9-D12.G Aplysia californica cDNA amplif... 46 3.6 1
(FF075622) G1045P325RJ4.T0 Aplysia californica Pooled Normal... 46 3.6 1
(AY394560) Campylobacter coli plasmid pCC31, complete sequence. 46 3.6 1
(BW451699) Ciona intestinalis cDNA, clone:cijv016k22, 3'end,... 44 3.6 2
(BW170750) Ciona intestinalis cDNA, clone:rcinc009l14, 3' en... 44 3.7 2
(FF723870) XABT39990.rev Gateway compatible cien cDNA librar... 44 3.7 2
(BW472641) Ciona intestinalis cDNA, clone:cijv012b09, 3'end,... 44 3.7 2
(BW457787) Ciona intestinalis cDNA, clone:cijv026l16, 3'end,... 44 3.8 2
(AM180355) Clostridium difficile 630 complete genome. 38 4.4 22
(CU138553) Zebrafish DNA sequence from clone DKEY-284I7 in l... 34 5.2 8
(Z97338) Arabidopsis thaliana DNA chromosome 4, ESSA I FCA c... 32 6.1 7
(AY145471) Rachiplusia ou multiple nucleopolyhedrovirus, com... 40 6.1 5
(AL035709) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 40 7.4 6
(AC129698) Rattus norvegicus clone CH230-10O17, *** SEQUENCI... 38 8.0 8
(EJ962743) 1093022015818 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.8 2
(EJ940385) 1093018862114 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.9 2
(EJ926024) 1093018782323 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.9 2
(AC093730) Homo sapiens BAC clone RP11-12K22 from 4, complet... 38 9.6 6
>(BJ431924) Dictyostelium discoideum cDNA clone:ddv17e05, 3' end,
single read.
Length = 784
Score = 1350 bits (681), Expect = 0.0
Identities = 684/685 (99%)
Strand = Plus / Minus
Query: 609 tagataccaaaacttcaccaaataaaaacgttacaaacactcaaatctcagcaacctacc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tagataccaaaacttcaccaaataaaaacgttacaaacactcaaatctcagcaacctacc 725
Query: 669 cagtcgttgatggaaaatacgtttcattcacccaaaaatcacttttaaatacagctgatg 728
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cagtcgctgatggaaaatacgtttcattcacccaaaaatcacttttaaatacagctgatg 665
Query: 729 ctttagctgaattctttaatatcaaaacagcccaaagattttcatttgccgctccattat 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctttagctgaattctttaatatcaaaacagcccaaagattttcatttgccgctccattat 605
Query: 789 ttgaaggtaacgccactgctttcaacctagcatgtctttcaaaaggtgctttgatcgcac 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttgaaggtaacgccactgctttcaacctagcatgtctttcaaaaggtgctttgatcgcac 545
Query: 849 tcatcagtcaaattaatccagcaaacattttaaattcaatcattaaagataaatgtgata 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcatcagtcaaattaatccagcaaacattttaaattcaatcattaaagataaatgtgata 485
Query: 909 accttttcatttcatcatcagttttaaatacattagtttcaagcccagaatttgcaagag 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 accttttcatttcatcatcagttttaaatacattagtttcaagcccagaatttgcaagag 425
Query: 969 ttgaaaactttgaattaaagaaattgattgttgttggagaaattgataattcagttgtta 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttgaaaactttgaattaaagaaattgattgttgttggagaaattgataattcagttgtta 365
Query: 1029 aacaatttgaatcaaaatgtaaaggtgttgaatcatctattattccattcgttcatgctg 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aacaatttgaatcaaaatgtaaaggtgttgaatcatctattattccattcgttcatgctg 305
Query: 1089 gtcaaatttcaggtgtagttttcaattcatcaggtgttggtaaacttttaccaaatgttg 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtcaaatttcaggtgtagttttcaattcatcaggtgttggtaaacttttaccaaatgttg 245
Query: 1149 aagctaaaatcgtcgatagcaatggtaaagagttagatttcgataataaaggttcattaa 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aagctaaaatcgtcgatagcaatggtaaagagttagatttcgataataaaggttcattaa 185
Query: 1209 tgactaaaggtttccatgttggttccaatccagctcattggttaaaaactaacatcaaag 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tgactaaaggtttccatgttggttccaatccagctcattggttaaaaactaacatcaaag 125
Query: 1269 cttcaatgtcaaaagatggtaccat 1293
|||||||||||||||||||||||||
Sbjct: 124 cttcaatgtcaaaagatggtaccat 100
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,692,905,883
Number of extensions: 98302072
Number of successful extensions: 7904329
Number of sequences better than 10.0: 70
Length of query: 1397
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1373
Effective length of database: 97,308,875,965
Effective search space: 133605086699945
Effective search space used: 133605086699945
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.13 |
| Homology vs Protein |
Query= Contig-U15013-1 (Contig-U15013-1Q) /CSM_Contig/Contig-U15013-1Q.Seq.d
(1397 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CP000758_2673(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 95 7e-18
CP001172_2075(CP001172|pid:none) Acinetobacter baumannii AB307-0... 90 2e-16
AP006627_586(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, co... 85 7e-15
AE017333_2040(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 84 9e-15
BA000004_1131(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 83 3e-14
AF184956_8(AF184956|pid:none) Bacillus subtilis mycosubtilin ope... 81 8e-14
CP000446_2274(CP000446|pid:none) Shewanella sp. MR-4, complete g... 80 2e-13
AE017333_1065(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 79 3e-13
CP000555_344(CP000555|pid:none) Methylibium petroleiphilum PM1, ... 79 4e-13
CP000699_4337(CP000699|pid:none) Sphingomonas wittichii RW1, com... 79 4e-13
CP001103_1440(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 78 9e-13
CP001393_738(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 76 3e-12
AE000666_653(AE000666|pid:none) Methanothermobacter thermautotro... 74 1e-11
AL009126_1889(AL009126|pid:none) Bacillus subtilis subsp. subtil... 72 4e-11
CP000444_2338(CP000444|pid:none) Shewanella sp. MR-7, complete g... 72 6e-11
AE014299_1935(AE014299|pid:none) Shewanella oneidensis MR-1, com... 70 1e-10
AP008955_2530(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 70 2e-10
CP001322_3252(CP001322|pid:none) Desulfatibacillum alkenivorans ... 70 2e-10
CP001096_460(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 70 2e-10
CP000251_3001(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 69 3e-10
CR555306_2638(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 69 5e-10
AP010904_1964(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 68 9e-10
CP000698_1551(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 68 9e-10
CP000753_2608(CP000753|pid:none) Shewanella baltica OS185, compl... 68 9e-10
CP000503_2317(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 68 9e-10
CP000830_3387(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 67 2e-09
CP000922_180(CP000922|pid:none) Anoxybacillus flavithermus WK1, ... 67 2e-09
CP000867_322(CP000867|pid:none) Methanococcus maripaludis C6, co... 66 3e-09
CP001052_3826(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 65 6e-09
CP001131_3086(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 65 8e-09
BA000012_5442(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 64 1e-08
CP000250_579(CP000250|pid:none) Rhodopseudomonas palustris HaA2,... 64 1e-08
CP001349_280(CP001349|pid:none) Methylobacterium nodulans ORS 20... 64 1e-08
CP000961_3992(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 64 2e-08
AM260479_1920(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 63 3e-08
CP001390_3515(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 63 3e-08
Y13917_7(Y13917|pid:none) Bacillus subtilis ppsE, yngL, yngK, yo... 62 4e-08
AE014134_955(AE014134|pid:none) Drosophila melanogaster chromoso... 62 4e-08
AL646052_442(AL646052|pid:none) Ralstonia solanacearum GMI1000 c... 62 5e-08
AP009493_1333(AP009493|pid:none) Streptomyces griseus subsp. gri... 62 7e-08
AF098989_3(AF098989|pid:none) Caenorhabditis elegans cosmid F47G... 61 9e-08
CP000884_5956(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 61 9e-08
AE017180_1095(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 61 1e-07
CP000090_1455(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 61 1e-07
CU633749_1504(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 60 1e-07
CP001348_1822(CP001348|pid:none) Clostridium cellulolyticum H10,... 60 2e-07
CP000512_4277(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 60 2e-07
DQ324263_1(DQ324263|pid:none) Moraxella osloensis acyl-CoA synth... 60 2e-07
BX571965_3423(BX571965|pid:none) Burkholderia pseudomallei strai... 60 2e-07
CP000440_97(CP000440|pid:none) Burkholderia ambifaria AMMD chrom... 60 2e-07
CP001408_4065(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 60 2e-07
CP000112_557(CP000112|pid:none) Desulfovibrio desulfuricans G20,... 59 3e-07
CP000099_2727(CP000099|pid:none) Methanosarcina barkeri str. Fus... 59 3e-07
CP001503_71(CP001503|pid:none) Burkholderia glumae BGR1 chromoso... 59 4e-07
CP000570_3904(CP000570|pid:none) Burkholderia pseudomallei 668 c... 59 4e-07
AP008230_3791(AP008230|pid:none) Desulfitobacterium hafniense Y5... 59 6e-07
CP000606_2586(CP000606|pid:none) Shewanella loihica PV-4, comple... 59 6e-07
CP001087_989(CP001087|pid:none) Desulfobacterium autotrophicum H... 58 9e-07
AM114193_378(AM114193|pid:none) Uncultured methanogenic archaeon... 58 9e-07
CP000388_153(CP000388|pid:none) Pseudoalteromonas atlantica T6c,... 57 1e-06
CP001089_1371(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 57 1e-06
CP000142_2105(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 57 2e-06
CP000958_123(CP000958|pid:none) Burkholderia cenocepacia MC0-3 c... 57 2e-06
CP000378_2927(CP000378|pid:none) Burkholderia cenocepacia AU 105... 56 3e-06
BA000028_1058(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 55 5e-06
CP000431_6029(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 55 5e-06
CP000507_1897(CP000507|pid:none) Shewanella amazonensis SB2B, co... 55 6e-06
AE008384_2392(AE008384|pid:none) Methanosarcina mazei strain Goe... 55 6e-06
CP000744_2643(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 55 6e-06
CP000304_3139(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 55 6e-06
CP000447_2484(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 55 8e-06
AP008957_1818(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 55 8e-06
CP001338_984(CP001338|pid:none) Candidatus Methanosphaerula palu... 54 1e-05
CP000094_3651(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 54 1e-05
CP001638_607(CP001638|pid:none) Geobacillus sp. WCH70, complete ... 54 1e-05
CR954246_1355(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 54 1e-05
CP000943_2191(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 54 1e-05
CP000539_3617(CP000539|pid:none) Acidovorax sp. JS42, complete g... 54 1e-05
CP000568_231(CP000568|pid:none) Clostridium thermocellum ATCC 27... 53 2e-05
T33511(T33511)hypothetical protein F47G6.2 - Caenorhabditis eleg... 53 2e-05
AE004091_2558(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 53 3e-05
AL939126_191(AL939126|pid:none) Streptomyces coelicolor A3(2) co... 53 3e-05
AM408590_2529(AM408590|pid:none) Mycobacterium bovis BCG Pasteur... 52 4e-05
CP000254_1577(CP000254|pid:none) Methanospirillum hungatei JF-1,... 52 4e-05
A70551(A70551) probable acid-CoA ligase (EC 6.2.1.-) fadD35 - My... 52 4e-05
CP001392_2989(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 52 5e-05
BX572594_138(BX572594|pid:none) Rhodopseudomonas palustris CGA00... 52 5e-05
CP000148_2660(CP000148|pid:none) Geobacter metallireducens GS-15... 52 7e-05
CP000352_610(CP000352|pid:none) Ralstonia metallidurans CH34, co... 52 7e-05
CP000139_2639(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 52 7e-05
CT573326_3138(CT573326|pid:none) Pseudomonas entomophila str. L4... 51 1e-04
CP001102_745(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 50 2e-04
CP000699_1439(CP000699|pid:none) Sphingomonas wittichii RW1, com... 50 2e-04
CR626927_4151(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 50 2e-04
(Q499N5) RecName: Full=Acyl-CoA synthetase family member 2, mito... 50 2e-04
AE015451_3426(AE015451|pid:none) Pseudomonas putida KT2440 compl... 50 2e-04
AE015928_2781(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 50 2e-04
CP000454_3044(CP000454|pid:none) Arthrobacter sp. FB24, complete... 50 2e-04
CP000560_963(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 50 2e-04
CP000949_1811(CP000949|pid:none) Pseudomonas putida W619, comple... 50 3e-04
T21507(T21507) hypothetical protein F28F8.2 - Caenorhabditis ele... 50 3e-04
CP000712_2273(CP000712|pid:none) Pseudomonas putida F1, complete... 49 3e-04
AM260479_3421(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 49 6e-04
CT573326_2750(CT573326|pid:none) Pseudomonas entomophila str. L4... 49 6e-04
FM178379_2698(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 48 7e-04
CP000697_2326(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 48 7e-04
CP000272_818(CP000272|pid:none) Burkholderia xenovorans LB400 ch... 48 0.001
AP007157_475(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 48 0.001
AL009126_1059(AL009126|pid:none) Bacillus subtilis subsp. subtil... 47 0.002
EF406120_1(EF406120|pid:none) Pseudomonas putida strain U phenyl... 47 0.002
CP000250_3580(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 47 0.002
CP001050_299(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945,... 46 0.003
CP000949_2927(CP000949|pid:none) Pseudomonas putida W619, comple... 46 0.004
BX640438_122(BX640438|pid:none) Bordetella bronchiseptica strain... 46 0.004
AE002098_1488(AE002098|pid:none) Neisseria meningitidis MC58, co... 45 0.005
BX640412_184(BX640412|pid:none) Bordetella pertussis strain Toha... 45 0.005
DQ458226_1(DQ458226|pid:none) Photuris congener isolate AFP01 pu... 45 0.005
CP000076_3884(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 45 0.006
AP009049_1398(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 45 0.006
AM270113_18(AM270113|pid:none) Aspergillus niger contig An06c007... 45 0.008
AE006641_1191(AE006641|pid:none) Sulfolobus solfataricus P2, com... 44 0.011
CP000248_1684(CP000248|pid:none) Novosphingobium aromaticivorans... 44 0.011
AL157959_1542(AL157959|pid:none) Neisseria meningitidis serogrou... 44 0.011
CP000817_257(CP000817|pid:none) Lysinibacillus sphaericus C3-41,... 44 0.014
CP000712_1756(CP000712|pid:none) Pseudomonas putida F1, complete... 44 0.014
(O07610) RecName: Full=Long-chain-fatty-acid--CoA ligase; ... 44 0.014
CP000141_1569(CP000141|pid:none) Carboxydothermus hydrogenoforma... 44 0.014
CP001139_2279(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 44 0.014
CP000557_570(CP000557|pid:none) Geobacillus thermodenitrificans ... 44 0.018
DQ458222_1(DQ458222|pid:none) Aphodius rufipes isolate AFP02 put... 44 0.018
CP001358_2302(CP001358|pid:none) Desulfovibrio desulfuricans sub... 43 0.024
CP000656_4837(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 43 0.024
CP000542_351(CP000542|pid:none) Verminephrobacter eiseniae EF01-... 43 0.024
CP000926_2462(CP000926|pid:none) Pseudomonas putida GB-1, comple... 43 0.024
CP001322_3819(CP001322|pid:none) Desulfatibacillum alkenivorans ... 43 0.024
CP000699_3279(CP000699|pid:none) Sphingomonas wittichii RW1, com... 43 0.024
CR628336_1514(CR628336|pid:none) Legionella pneumophila str. Par... 43 0.031
CP000283_579(CP000283|pid:none) Rhodopseudomonas palustris BisB5... 43 0.031
CP001628_1672(CP001628|pid:none) Micrococcus luteus NCTC 2665, c... 43 0.031
CP000580_4770(CP000580|pid:none) Mycobacterium sp. JLS, complete... 42 0.041
CP001399_713(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 42 0.053
CP000687_401(CP000687|pid:none) Actinobacillus pleuropneumoniae ... 42 0.053
CP000569_393(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 42 0.053
AE017221_1093(AE017221|pid:none) Thermus thermophilus HB27, comp... 42 0.070
CP000474_2913(CP000474|pid:none) Arthrobacter aurescens TC1, com... 42 0.070
AM747721_129(AM747721|pid:none) Burkholderia cenocepacia J2315 c... 42 0.070
CP000511_1542(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 42 0.070
AF176639_1(AF176639|pid:none) Pseudomonas stutzeri long chain fa... 42 0.070
AE017354_1528(AE017354|pid:none) Legionella pneumophila subsp. p... 41 0.091
AB196456_1(AB196456|pid:none) Luciola cruciata mRNA for hypothet... 41 0.091
CP000749_2548(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 41 0.12
EU684102_1(EU684102|pid:none) Lampyris noctiluca clone LanLL1 pu... 41 0.12
CP001404_1856(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 40 0.16
AM920437_2478(AM920437|pid:none) Penicillium chrysogenum Wiscons... 40 0.16
(P46450) RecName: Full=Long-chain-fatty-acid--CoA ligase; ... 40 0.20
CP000485_2516(CP000485|pid:none) Bacillus thuringiensis str. Al ... 40 0.20
AP011115_6453(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 40 0.20
AE017225_3186(AE017225|pid:none) Bacillus anthracis str. Sterne,... 40 0.27
CP000379_2028(CP000379|pid:none) Burkholderia cenocepacia AU 105... 40 0.27
EU253978_1(EU253978|pid:none) Ajellomyces capsulatus acid Co-A l... 40 0.27
AP008226_1430(AP008226|pid:none) Thermus thermophilus HB8 genomi... 40 0.27
BT042746_1(BT042746|pid:none) Zea mays full-length cDNA clone ZM... 40 0.27
CP000381_1397(CP000381|pid:none) Neisseria meningitidis 053442, ... 40 0.27
AE016879_3183(AE016879|pid:none) Bacillus anthracis str. Ames, c... 40 0.27
CP000227_3124(CP000227|pid:none) Bacillus cereus Q1, complete ge... 40 0.27
BT055550_1(BT055550|pid:none) Zea mays full-length cDNA clone ZM... 40 0.27
AM270325_60(AM270325|pid:none) Aspergillus niger contig An14c018... 40 0.27
CP000605_592(CP000605|pid:none) Bifidobacterium longum DJO10A, c... 40 0.27
AP011115_2974(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 40 0.27
CP000057_443(CP000057|pid:none) Haemophilus influenzae 86-028NP,... 40 0.27
CP000001_2656(CP000001|pid:none) Bacillus cereus E33L, complete ... 39 0.35
AE014295_507(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 39 0.35
CP001615_2455(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 39 0.35
AP008955_2098(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 39 0.35
AE016877_3245(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 39 0.35
CP001321_203(CP001321|pid:none) Haemophilus parasuis SH0165, com... 39 0.35
CP001176_3275(CP001176|pid:none) Bacillus cereus B4264, complete... 39 0.35
CP001186_3339(CP001186|pid:none) Bacillus cereus G9842, complete... 39 0.35
AE017333_1020(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 39 0.45
AP008957_5203(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 39 0.45
(Q54W36) RecName: Full=Hybrid signal transduction histidine kina... 39 0.45
AY318871_74(AY318871|pid:none) Canarypox virus strain ATCC VR-11... 39 0.59
CP000431_6338(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 39 0.59
CP000150_274(CP000150|pid:none) Burkholderia sp. 383 chromosome ... 39 0.59
AE017321_301(AE017321|pid:none) Wolbachia endosymbiont strain TR... 39 0.59
AP009179_2246(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 39 0.59
AE017221_1059(AE017221|pid:none) Thermus thermophilus HB27, comp... 39 0.59
EU851876_29(EU851876|pid:none) Mycobacterium brisbanense strain ... 39 0.59
BT038590_1(BT038590|pid:none) Zea mays full-length cDNA clone ZM... 39 0.59
AP003313_16(AP003313|pid:none) Oryza sativa Japonica Group genom... 39 0.59
AP008957_5494(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 38 0.77
(Q8RU95) RecName: Full=4-coumarate--CoA ligase-like 6; ... 38 0.77
CP001614_1659(CP001614|pid:none) Teredinibacter turnerae T7901, ... 38 0.77
CP000817_3160(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 38 0.77
AY250835_1(AY250835|pid:none) Arabidopsis thaliana 4-coumarate-C... 38 0.77
AP008230_4110(AP008230|pid:none) Desulfitobacterium hafniense Y5... 38 1.0
(P40064) RecName: Full=Nucleoporin NUP157; AltName: Full=Nuclear... 38 1.0
CP000542_632(CP000542|pid:none) Verminephrobacter eiseniae EF01-... 38 1.0
CP001399_1716(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 38 1.0
CP000686_3560(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 38 1.0
CP000721_2073(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 38 1.0
CP001400_1588(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 38 1.0
BA000030_6619(BA000030|pid:none) Streptomyces avermitilis MA-468... 37 1.3
CP000943_162(CP000943|pid:none) Methylobacterium sp. 4-46, compl... 37 1.3
CP000058_4349(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 37 1.3
BX842646_252(BX842646|pid:none) Bdellovibrio bacteriovorus compl... 37 1.3
AE003849_1512(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 37 1.7
CP000721_254(CP000721|pid:none) Clostridium beijerinckii NCIMB 8... 37 1.7
CP001281_3849(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 37 1.7
AM260479_834(AM260479|pid:none) Ralstonia eutropha H16 chromosom... 37 1.7
AY250834_1(AY250834|pid:none) Arabidopsis thaliana 4-coumarate-C... 37 1.7
CP000698_2312(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 37 2.2
EU684099_1(EU684099|pid:none) Lampyris sp. n. JCD-2007 putative ... 37 2.2
CP000485_2910(CP000485|pid:none) Bacillus thuringiensis str. Al ... 37 2.2
AF320254_7(AF320254|pid:none) Azoarcus evansii aerobic 2-aminobe... 37 2.2
AP008957_5212(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 37 2.2
CP001407_3328(CP001407|pid:none) Bacillus cereus 03BB102, comple... 37 2.2
CP000434_168(CP000434|pid:none) Rhodococcus jostii RHA1 plasmid ... 36 2.9
CP000153_1648(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 36 2.9
BX571856_1774(BX571856|pid:none) Staphylococcus aureus subsp. au... 36 2.9
AP009493_3091(AP009493|pid:none) Streptomyces griseus subsp. gri... 36 2.9
CP000494_3039(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 36 2.9
AE008691_1822(AE008691|pid:none) Thermoanaerobacter tengcongensi... 36 3.8
AC027665_18(AC027665|pid:none) Genomic sequence for Arabidopsis ... 36 3.8
CP000688_906(CP000688|pid:none) Dehalococcoides sp. BAV1, comple... 36 3.8
AE017194_3408(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 36 3.8
CP000046_1739(CP000046|pid:none) Staphylococcus aureus subsp. au... 36 3.8
(P0C5B6) RecName: Full=4-coumarate--CoA ligase-like 4; ... 36 3.8
CP000686_221(CP000686|pid:none) Roseiflexus sp. RS-1, complete g... 36 3.8
AP008957_2241(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 36 3.8
CP000352_2191(CP000352|pid:none) Ralstonia metallidurans CH34, c... 36 3.8
AM292791_1(AM292791|pid:none) Pseudomonas fluorescens partial op... 36 3.8
CP000854_2572(CP000854|pid:none) Mycobacterium marinum M, comple... 36 3.8
CT573074_106(CT573074|pid:none) Kuenenia stuttgartiensis genome ... 36 3.8
AP009256_1611(AP009256|pid:none) Bifidobacterium adolescentis AT... 36 3.8
CP001638_1504(CP001638|pid:none) Geobacillus sp. WCH70, complete... 36 3.8
CP000813_317(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 36 3.8
CP000001_3095(CP000001|pid:none) Bacillus cereus E33L, complete ... 36 3.8
AJ938182_1593(AJ938182|pid:none) Staphylococcus aureus RF122 com... 35 5.0
CP000388_1361(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 35 5.0
CP000826_3816(CP000826|pid:none) Serratia proteamaculans 568, co... 35 5.0
AE017226_1729(AE017226|pid:none) Treponema denticola ATCC 35405,... 35 5.0
BX640440_207(BX640440|pid:none) Bordetella bronchiseptica strain... 35 5.0
CP000248_2440(CP000248|pid:none) Novosphingobium aromaticivorans... 35 5.0
CP000941_788(CP000941|pid:none) Xylella fastidiosa M12, complete... 35 5.0
AB005247_1(AB005247|pid:none) Arabidopsis thaliana genomic DNA, ... 35 5.0
CP001636_643(CP001636|pid:none) Variovorax paradoxus S110 chromo... 35 6.5
CP001083_1391(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 35 6.5
AM260479_3210(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 35 6.5
AF299336_7(AF299336|pid:none) Stigmatella aurantiaca myxochelin ... 35 6.5
(Q54P79) RecName: Full=Probable 4-coumarate--CoA ligase 3; ... 35 6.5
AM260479_1499(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 35 6.5
(Q9LQ12) RecName: Full=4-coumarate--CoA ligase-like 1; ... 35 6.5
CP000542_1797(CP000542|pid:none) Verminephrobacter eiseniae EF01... 35 6.5
CP000774_558(CP000774|pid:none) Parvibaculum lavamentivorans DS-... 35 6.5
CP001403_824(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14,... 35 6.5
CP000962_1410(CP000962|pid:none) Clostridium botulinum A3 str. L... 35 6.5
AE014185_47(AE014185|pid:none) Plasmodium falciparum 3D7 chromos... 35 8.5
AP008226_1463(AP008226|pid:none) Thermus thermophilus HB8 genomi... 35 8.5
AP007161_215(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 35 8.5
CR555306_1081(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 35 8.5
BA000011_123(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 35 8.5
>CP000758_2673(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188
chromosome 1, complete sequence.
Length = 562
Score = 94.7 bits (234), Expect = 7e-18
Identities = 99/448 (22%), Positives = 185/448 (41%), Gaps = 45/448 (10%)
Frame = +2
Query: 80 TYVQPGKFNAETNETIGNRISNVCEKFSYNDAISIPDHENYTLTYNDVLQNTRGLAGGFI 259
+YV TIG + + EK+ A+ I H+N LTY+++ Q T LA GF+
Sbjct: 5 SYVHGASDKLLIGNTIGRHLDQIAEKYPDRPAV-IVRHQNIRLTYSELKQLTDRLAEGFL 63
Query: 260 EHSIKDDQTI-VSNSFGVDSTMTHIAASFAGLNYVSIPPTSTFSEIGTHLNNQKASSFVM 436
++ + + + + ++ +T A++ AGL V+I P E+ L + ++ ++
Sbjct: 64 AIGLRPGERLGIWSPNNLEWILTQFASAKAGLILVNINPAYRAHELEYVLGKVECAALIL 123
Query: 437 ADSNQRV-MVDEALEFFPNLKTIYNDEYHRDNRFPELKHIFSTGASQQPGISLLRDIILD 613
A S + +D P L + R P L+ + GA Q PG+ D+
Sbjct: 124 APSLKTSNYIDILRSIVPELDEA-RPGHVMSERLPNLRCVIRIGAEQTPGMLNFDDVAQS 182
Query: 614 TKTSPNKNVTNTQISATYPVVDGKYVSFTQ-------------KSLLNTADALAEFFNIK 754
+ + Q++ D + FT ++LN + E +
Sbjct: 183 GDEVTGQELA--QLAEELQFDDPINIQFTSGTTGSPKGATLSHHNILNNGFFVGEAMQLS 240
Query: 755 TAQRFSFAAPLFEGNATAF-NLACLSKGALIALISQ-INPANILNSIIKDKCDNLFISSS 928
R P + NLAC++ G+ + + ++ +P L ++ +++C L +
Sbjct: 241 EQDRLCIPVPFYHCFGMVLGNLACVTHGSCMVIPNESFDPLLTLQTVEEEQCTGLHGVPT 300
Query: 929 VLNTLVSSPEFARVENFELKKLIVVG-----EIDNSVVKQFESKCKGVESSIIPFVHAGQ 1093
+ ++ P+F+R L+ I+ G E+ VV + +S I +
Sbjct: 301 MFIAMLDHPDFSRFNLTSLRTGIMAGSPCPIEVMRRVVSEMH------QSEITIAYGMTE 354
Query: 1094 ISGVVFNSSG----------VGKLLPNVEAKIVDSNGKELDFDNKGSLMTKGFHV----- 1228
S V F SS VG++ P++E KIVD++GK + KG L+T+G+ V
Sbjct: 355 TSPVSFQSSTTDPLERRVSTVGRIHPHLEVKIVDADGKVVPRGEKGELLTRGYSVMRGYW 414
Query: 1229 --------GSNPAHWLKTNIKASMSKDG 1288
+ A W+ T A++ ++G
Sbjct: 415 NDAESSAGAIDDAGWMHTGDLATIDEEG 442
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,034,843,678
Number of extensions: 38867400
Number of successful extensions: 94749
Number of sequences better than 10.0: 262
Number of HSP's gapped: 94585
Number of HSP's successfully gapped: 263
Length of query: 465
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 333
Effective length of database: 623,955,076
Effective search space: 207777040308
Effective search space used: 207777040308
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
2 |
| VF (FL, S) |
4 |
| AH (FL, L) |
0 |
| AF (FL, S) |
2 |
| SL (DIR, L) |
2 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |