| Contig-U15005-1 |
| Contig ID |
Contig-U15005-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
2023 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
1509217 |
| End point |
1507616 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
4 |
| Link to clone list |
U15005 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 1. 8 |
| Homology vs DNA |
Query= Contig-U15005-1 (Contig-U15005-1Q) /CSM_Contig/Contig-U15005-1Q.Seq.d
(2023 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ327384) Dictyostelium discoideum cDNA clone:dda20a12, 5' ... 476 0.0 3
(BJ344708) Dictyostelium discoideum cDNA clone:dda20a12, 3' ... 430 0.0 5
(AU071918) Dictyostelium discoideum slug cDNA, clone SSC737. 383 e-118 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 4e-07 21
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 46 1e-06 15
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 36 2e-06 23
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 36 1e-05 21
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 2e-05 18
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 36 2e-05 19
(BJ362910) Dictyostelium discoideum cDNA clone:ddc24c05, 5' ... 46 3e-05 2
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 34 4e-05 18
(BJ324973) Dictyostelium discoideum cDNA clone:dda8p20, 5' e... 46 4e-05 2
(BJ325466) Dictyostelium discoideum cDNA clone:dda14l14, 5' ... 46 4e-05 2
(BJ329246) Dictyostelium discoideum cDNA clone:dda24f08, 5' ... 46 4e-05 2
(BJ324658) Dictyostelium discoideum cDNA clone:dda7i09, 5' e... 46 5e-05 2
(BJ328812) Dictyostelium discoideum cDNA clone:dda29i18, 5' ... 46 5e-05 2
(BJ325199) Dictyostelium discoideum cDNA clone:dda13a11, 5' ... 46 5e-05 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 5e-05 19
(BJ332814) Dictyostelium discoideum cDNA clone:dda40m22, 5' ... 46 5e-05 2
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 5e-05 16
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 40 1e-04 21
(AL844509) Plasmodium falciparum chromosome 13. 36 1e-04 19
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 2e-04 19
(AX344550) Sequence 1 from Patent WO0200932. 36 2e-04 19
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi... 36 2e-04 14
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 34 3e-04 17
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 34 3e-04 18
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 34 3e-04 17
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.001 16
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.001 19
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 0.001 16
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1. 34 0.002 23
(AL844507) Plasmodium falciparum chromosome 8. 34 0.002 18
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.002 17
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 38 0.003 9
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.003 18
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 30 0.003 17
(AC216466) Populus trichocarpa clone POP027-H05, complete se... 38 0.003 13
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 34 0.003 14
(CP000040) Bacillus cereus E33L plasmid pE33L466, complete s... 40 0.003 13
(AE017308) Mycoplasma mobile 163K complete genome. 36 0.004 21
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 34 0.005 17
(AL035476) Plasmodium falciparum MAL4P3. 38 0.005 22
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 40 0.005 15
(AE015927) Clostridium tetani E88, complete genome. 36 0.005 18
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 0.006 18
(CP000673) Clostridium kluyveri DSM 555, complete genome. 38 0.007 22
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 0.007 19
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 0.008 19
(CP000025) Campylobacter jejuni RM1221, complete genome. 34 0.008 17
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 0.009 19
(AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 0.010 14
(DD010735) Diagnosis of known genetic Parameters within the ... 38 0.010 17
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 0.010 16
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 36 0.010 16
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 34 0.012 12
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 38 0.012 18
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.013 18
(CP000728) Clostridium botulinum F str. Langeland, complete ... 38 0.013 19
(ER517835) 1093015531431 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.013 2
(AX344559) Sequence 10 from Patent WO0200932. 34 0.014 17
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.015 17
(CP000727) Clostridium botulinum A str. Hall, complete genome. 36 0.015 21
(CP000361) Arcobacter butzleri RM4018, complete genome. 38 0.015 19
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 38 0.018 22
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 44 0.022 20
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com... 42 0.023 17
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 38 0.023 17
(AM429147) Vitis vinifera contig VV78X055003.9, whole genome... 36 0.023 4
(CP000382) Clostridium novyi NT, complete genome. 34 0.025 22
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 0.027 13
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 32 0.027 16
(AL034559) Plasmodium falciparum MAL3P7. 30 0.028 21
(BD061520) Genome DNA of symbiotic bacteria of aphid. 32 0.029 20
(AR409405) Sequence 1 from patent US 6632935. 32 0.029 20
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 32 0.029 20
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 40 0.030 17
(DT785431) 126446623 TH1 Tribolium castaneum cDNA clone 106M... 36 0.031 4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 0.031 20
(AF303741) Chilo iridescent virus complete genome. 32 0.032 15
(BJ330060) Dictyostelium discoideum cDNA clone:dda27b09, 5' ... 34 0.034 4
(BJ361837) Dictyostelium discoideum cDNA clone:ddc19b01, 5' ... 34 0.036 4
(AC215354) Solanum lycopersicum chromosome 2 clone C02HBa001... 38 0.036 9
(AX344564) Sequence 15 from Patent WO0200932. 36 0.036 17
(AL031745) Plasmodium falciparum DNA from MAL1P2. 38 0.037 19
(AY863213) Smittium culisetae mitochondrion, complete genome. 30 0.039 13
(AF467886) Crioceris duodecimpunctata mitochondrion, complet... 32 0.039 8
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.040 18
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 36 0.043 17
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 0.046 16
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.048 20
(DQ364229) Xenos vesparum mitochondrion, partial genome. 34 0.049 6
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 36 0.052 16
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 40 0.053 26
(EJ119257) 1092343365613 Global-Ocean-Sampling_GS-27-01-01-1... 38 0.055 3
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 0.057 19
(AE017198) Lactobacillus johnsonii NCC 533, complete genome. 42 0.058 24
(EU168191) Heterosigma akashiwo strain CCMP 452 chloroplast,... 36 0.072 12
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 36 0.076 20
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 52 0.084 1
>(BJ327384) Dictyostelium discoideum cDNA clone:dda20a12, 5' end,
single read.
Length = 605
Score = 476 bits (240), Expect(3) = 0.0
Identities = 240/240 (100%)
Strand = Plus / Plus
Query: 366 caaagatttagaaaatggatgtaaagatattataacaattggtgaaattgaaaaacattt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caaagatttagaaaatggatgtaaagatattataacaattggtgaaattgaaaaacattt 425
Query: 426 aaaacaatgtaaatttacacatataaaatgtaaatttattggatgtaataaaattattag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaaacaatgtaaatttacacatataaaatgtaaatttattggatgtaataaaattattag 485
Query: 486 attaaatcaagttgaaaaacatgaaaaagaacaatgtgaatttagattagaatattgtag 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 attaaatcaagttgaaaaacatgaaaaagaacaatgtgaatttagattagaatattgtag 545
Query: 546 atattgtgataccgatggtataacatcaagatcattagagaatcattataaagaatgtcc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atattgtgataccgatggtataacatcaagatcattagagaatcattataaagaatgtcc 605
Score = 416 bits (210), Expect(3) = 0.0
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 1 aattttcttttctttttaaaacttaagtaccatatggcagaatatacacattattttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattttcttttctttttaaaacttaagtaccatatggcagaatatacacattattttata 60
Query: 61 caatataatttaacagatattttttatgaagatgtaaatattgaaaagtattcatgttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caatataatttaacagatattttttatgaagatgtaaatattgaaaagtattcatgttca 120
Query: 121 atttgttatgaatcagtatataaaaaagaaatttatcaatgtaaagaaattcattggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttgttatgaatcagtatataaaaaagaaatttatcaatgtaaagaaattcattggttt 180
Query: 181 tgcaaaacatgttgggcagaatcattgttt 210
||||||||||||||||||||||||||||||
Sbjct: 181 tgcaaaacatgttgggcagaatcattgttt 210
Score = 151 bits (76), Expect(3) = 0.0
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 220 gaatgtatgatatgtagatgtatagttaaatcaatttcagaactatcaagaaatagattc 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaatgtatgatatgtagatgtatagttaaatcaatttcagaactatcaagaaatagattc 279
Query: 280 attgaacaagattttt 295
||||||||||||||||
Sbjct: 280 attgaacaagattttt 295
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,486,059,764
Number of extensions: 170188067
Number of successful extensions: 17105680
Number of sequences better than 10.0: 704
Length of query: 2023
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1999
Effective length of database: 97,308,875,965
Effective search space: 194520443054035
Effective search space used: 194520443054035
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 7.13 |
| Homology vs Protein |
Query= Contig-U15005-1 (Contig-U15005-1Q) /CSM_Contig/Contig-U15005-1Q.Seq.d
(2023 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A29361(A29361) DG17 protein - slime mold (Dictyostelium discoide... 192 4e-47
AC117075_2(AC117075|pid:none) Dictyostelium discoideum chromosom... 154 2e-35
EU687744_1(EU687744|pid:none) Canis lupus familiaris TRAF5 (TRAF... 112 7e-23
U69108_1(U69108|pid:none) Homo sapiens TNF receptor associated f... 105 5e-21
(O00463) RecName: Full=TNF receptor-associated factor 5; AltName... 105 5e-21
D78141_1(D78141|pid:none) Mouse mRNA for TRAF5 protein, complete... 104 1e-20
(P70191) RecName: Full=TNF receptor-associated factor 5; &AK144... 104 1e-20
BC134494_1(BC134494|pid:none) Bos taurus TNF receptor-associated... 100 2e-19
AB100868_1(AB100868|pid:none) Gallus gallus TRAF-5 mRNA for tumo... 100 3e-19
AK303286_1(AK303286|pid:none) Homo sapiens cDNA FLJ55439 complet... 99 8e-19
BC075143_1(BC075143|pid:none) Xenopus laevis MGC81955 protein, m... 92 5e-17
CR855449_1(CR855449|pid:none) Xenopus tropicalis finished cDNA, ... 90 3e-16
BC082342_1(BC082342|pid:none) Xenopus tropicalis TNF receptor-as... 90 4e-16
AL929208_2(AL929208|pid:none) Zebrafish DNA sequence from clone ... 84 1e-14
BC055214_1(BC055214|pid:none) Danio rerio TNF receptor-associate... 84 1e-14
(Q60803) RecName: Full=TNF receptor-associated factor 3; AltName... 84 1e-14
A55960(A55960;A55649;A55135) CD40 receptor-associated factor 1 -... 84 3e-14
AY616583_1(AY616583|pid:none) Danio rerio TNF-receptor associate... 82 6e-14
(Q13114) RecName: Full=TNF receptor-associated factor 3; AltName... 81 1e-13
AB111062_1(AB111062|pid:none) Eptatretus burgeri Traf3 mRNA for ... 80 2e-13
U33840_1(U33840|pid:none) Mus musculus TRAF-related protein (TRA... 80 3e-13
FN357660_2(FN357660|pid:none) Schistosoma mansoni genome sequenc... 79 6e-13
EF210346_1(EF210346|pid:none) Branchiostoma belcheri tumor necro... 79 8e-13
BC077157_1(BC077157|pid:none) Danio rerio TNF receptor-associate... 78 1e-12
EF210343_1(EF210343|pid:none) Branchiostoma belcheri tumor necro... 78 1e-12
U15637_1(U15637|pid:none) Homo sapiens CD40 binding protein (CD4... 78 1e-12
AK155434_1(AK155434|pid:none) Mus musculus NOD-derived CD11c +ve... 75 7e-12
AM270347_51(AM270347|pid:none) Aspergillus niger contig An15c020... 75 1e-11
FN318206_1(FN318206|pid:none) Schistosoma japonicum isolate Anhu... 74 3e-11
EU204929_1(EU204929|pid:none) Macaca mulatta TNF receptor-associ... 73 3e-11
BT059017_1(BT059017|pid:none) Salmo salar clone ssal-rgf-520-217... 72 6e-11
EU204928_1(EU204928|pid:none) Cercocebus torquatus atys TNF rece... 72 8e-11
AJ617779_1(AJ617779|pid:none) Hydractinia echinata mRNA for TNF-... 72 1e-10
(Q9Y4K3) RecName: Full=TNF receptor-associated factor 6; AltName... 71 2e-10
AC117072_44(AC117072|pid:none) Dictyostelium discoideum chromoso... 71 2e-10
S71821(S71821;S78550)probable interleukin 1 signal-transducing p... 70 2e-10
AF348168_1(AF348168|pid:none) Caenorhabditis elegans TRF-1 mRNA,... 70 4e-10
BC076768_1(BC076768|pid:none) Xenopus laevis MGC83213 protein, m... 69 5e-10
CR548612_391(CR548612|pid:none) Paramecium tetraurelia macronucl... 69 5e-10
AJ517803_1(AJ517803|pid:none) Oncorhynchus mykiss mRNA for tumou... 69 5e-10
BC169064_1(BC169064|pid:none) Rattus norvegicus Tnf receptor-ass... 68 1e-09
EF210345_1(EF210345|pid:none) Branchiostoma belcheri tumor necro... 68 1e-09
DQ455748_1(DQ455748|pid:none) Ctenopharyngodon idella TNF recept... 68 1e-09
AJ297860_1(AJ297860|pid:none) Carassius auratus mRNA for tumor n... 68 1e-09
AE017349_401(AE017349|pid:none) Cryptococcus neoformans var. neo... 67 3e-09
AL807372_9(AL807372|pid:none) Neurospora crassa DNA linkage grou... 65 1e-08
AK147304_1(AK147304|pid:none) Mus musculus adult male brain UNDE... 64 3e-08
AK147362_1(AK147362|pid:none) Mus musculus adult male brain UNDE... 64 3e-08
BC168921_1(BC168921|pid:none) Rattus norvegicus Tnf receptor-ass... 64 3e-08
AF079837_1(AF079837|pid:none) Drosophila melanogaster TRAF1 (Tra... 62 6e-08
AK038136_1(AK038136|pid:none) Mus musculus 16 days neonate thymu... 62 6e-08
AC116963_47(AC116963|pid:none) Dictyostelium discoideum chromoso... 62 8e-08
AK300804_1(AK300804|pid:none) Homo sapiens cDNA FLJ60166 complet... 62 1e-07
AK222399_1(AK222399|pid:none) Ciona intestinalis mRNA for zinc f... 62 1e-07
AY891907_1(AY891907|pid:none) Synthetic construct Homo sapiens c... 62 1e-07
BC162047_1(BC162047|pid:none) Rattus norvegicus Tnf receptor ass... 60 4e-07
AF233449_1(AF233449|pid:none) Mus musculus TNF receptor associat... 60 4e-07
AY956816_1(AY956816|pid:none) Euprymna scolopes tumor necrosis f... 59 5e-07
CP000591_300(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 59 7e-07
AK052934_1(AK052934|pid:none) Mus musculus 16 days neonate heart... 59 7e-07
EU832054_1(EU832054|pid:none) Synthetic construct Homo sapiens c... 59 7e-07
(Q12933) RecName: Full=TNF receptor-associated factor 2; AltName... 59 7e-07
AF027570_1(AF027570|pid:none) Mus musculus tumor necrosis factor... 59 7e-07
S56163(S56163;S58925;S58926;I38729)tumor necrosis factor type 2 ... 59 7e-07
U12597_1(U12597|pid:none) Human tumor necrosis factor type 2 rec... 59 7e-07
AJ548839_1(AJ548839|pid:none) Oncorhynchus mykiss mRNA for tumor... 58 1e-06
(Q7XA77) RecName: Full=E3 ubiquitin-protein ligase SINA-like 5; ... 56 6e-06
AK298370_1(AK298370|pid:none) Homo sapiens cDNA FLJ54037 complet... 55 7e-06
CP001334_4(CP001334|pid:none) Micromonas sp. RCC299 chromosome 1... 54 2e-05
BC077302_1(BC077302|pid:none) Xenopus laevis PDZ domain containi... 54 3e-05
AP004111_13(AP004111|pid:none) Oryza sativa Japonica Group genom... 54 3e-05
DQ455749_1(DQ455749|pid:none) Ctenopharyngodon idella TNF recept... 53 4e-05
CP000594_58(CP000594|pid:none) Ostreococcus lucimarinus CCE9901 ... 52 1e-04
AM920436_216(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 52 1e-04
AC155895_20(AC155895|pid:none) Medicago truncatula chromosome 2 ... 51 1e-04
(Q9FKD7) RecName: Full=E3 ubiquitin-protein ligase SINA-like 7; ... 51 2e-04
CP000591_79(CP000591|pid:none) Ostreococcus lucimarinus CCE9901 ... 50 2e-04
AC016795_24(AC016795|pid:none) Arabidopsis thaliana chromosome I... 50 2e-04
CR954211_86(CR954211|pid:none) Ostreococcus tauri strain OTTH059... 49 5e-04
AM910990_126(AM910990|pid:none) Plasmodium knowlesi strain H chr... 48 0.001
(P68907) RecName: Full=PDZ domain-containing RING finger protein... 48 0.001
EU972832_1(EU972832|pid:none) Zea mays clone 388835 unknown mRNA. 48 0.001
AB029018_1(AB029018|pid:none) Homo sapiens mRNA for KIAA1095 pro... 48 0.001
BC150623_1(BC150623|pid:none) Homo sapiens PDZ domain containing... 48 0.001
FN392319_715(FN392319|pid:none) Pichia pastoris GS115 chromosome... 48 0.001
AK071049_1(AK071049|pid:none) Oryza sativa Japonica Group cDNA c... 48 0.001
(Q9UPQ7) RecName: Full=PDZ domain-containing RING finger protein... 48 0.001
AK241429_1(AK241429|pid:none) Oryza sativa Japonica Group cDNA, ... 48 0.001
BC014432_1(BC014432|pid:none) Homo sapiens PDZ domain containing... 48 0.001
AF079838_1(AF079838|pid:none) Drosophila melanogaster TRAF6 (Tra... 48 0.002
CR376844_4(CR376844|pid:none) Zebrafish DNA sequence from clone ... 47 0.002
BC074717_1(BC074717|pid:none) Xenopus tropicalis ariadne homolog... 47 0.003
BT036518_1(BT036518|pid:none) Zea mays full-length cDNA clone ZM... 46 0.005
BC123486_1(BC123486|pid:none) Bos taurus TRAF-type zinc finger d... 46 0.006
(Q58D05) RecName: Full=TRAF-type zinc finger domain-containing p... 46 0.006
AK223550_1(AK223550|pid:none) Homo sapiens mRNA for ariadne homo... 45 0.008
(O95376) RecName: Full=Protein ariadne-2 homolog; Short... 45 0.008
AF119793_1(AF119793|pid:none) Drosophila melanogaster TNF-recept... 45 0.008
(Q9CQ29) RecName: Full=RING finger protein 151; &AK005850_1(AK0... 45 0.010
EU974332_1(EU974332|pid:none) Zea mays clone 446343 prenyltransf... 45 0.010
AY087766_1(AY087766|pid:none) Arabidopsis thaliana clone 38292 m... 45 0.010
BT061909_1(BT061909|pid:none) Zea mays full-length cDNA clone ZM... 45 0.010
AB169516_1(AB169516|pid:none) Macaca fascicularis brain cDNA, cl... 45 0.010
AM502231_13(AM502231|pid:none) Leishmania infantum chromosome 13. 45 0.013
AJ245479_3(AJ245479|pid:none) Brassica napus subsp. napus Sll3, ... 45 0.013
AJ249908_1(AJ249908|pid:none) Brassica napus mRNA for SIAH1 prot... 45 0.013
BC123107_1(BC123107|pid:none) Xenopus laevis cDNA clone IMAGE:72... 45 0.013
(Q4R970) RecName: Full=TRAF-type zinc finger domain-containing p... 44 0.017
AK291331_1(AK291331|pid:none) Homo sapiens cDNA FLJ76844 complet... 44 0.017
AK295474_1(AK295474|pid:none) Homo sapiens cDNA FLJ55063 complet... 44 0.017
(O14545) RecName: Full=TRAF-type zinc finger domain-containing p... 44 0.017
BC110974_1(BC110974|pid:none) Xenopus laevis Cysteine and histid... 44 0.017
AK173098_1(AK173098|pid:none) Mus musculus mRNA for mKIAA1095 pr... 44 0.017
AM910987_196(AM910987|pid:none) Plasmodium knowlesi strain H chr... 44 0.022
AL035476_30(AL035476|pid:none) Plasmodium falciparum MAL4P3. &A... 44 0.029
CR382126_526(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 44 0.029
BT049703_1(BT049703|pid:none) Salmo salar clone ssal-eve-575-311... 44 0.029
(Q7YR89) RecName: Full=Cysteine and histidine-rich protein 1; 43 0.038
AK129156_1(AK129156|pid:none) Mus musculus mRNA for mKIAA0496 pr... 42 0.065
AY496942_2(AY496942|pid:none) Leishmania mexicana unknown (KLP-U... 42 0.065
(Q5BK76) RecName: Full=Cysteine and histidine-rich protein 1; 42 0.065
BC168705_1(BC168705|pid:none) Rattus norvegicus cysteine and his... 42 0.065
(Q9QXA1) RecName: Full=Cysteine and histidine-rich protein 1; &... 42 0.065
AC116984_74(AC116984|pid:none) Dictyostelium discoideum chromoso... 42 0.085
(Q94981) RecName: Full=Protein ariadne-1; Short=Ari-1; ... 42 0.085
AK160381_1(AK160381|pid:none) Homo sapiens mRNA for FLJ00352 pro... 42 0.085
BC168067_1(BC168067|pid:none) Xenopus tropicalis TNF receptor-as... 42 0.11
BT041847_1(BT041847|pid:none) Zea mays full-length cDNA clone ZM... 42 0.11
(Q3UDK1) RecName: Full=TRAF-type zinc finger domain-containing p... 42 0.11
AP003046_21(AP003046|pid:none) Oryza sativa Japonica Group genom... 41 0.15
AC146866_19(AC146866|pid:none) Medicago truncatula clone mth2-19... 41 0.15
BT045523_1(BT045523|pid:none) Salmo salar clone ssal-rgf-524-064... 41 0.15
AL844509_184(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.19
DQ837165_34(DQ837165|pid:none) Ecotropis obliqua NPV strain A1, ... 41 0.19
AP003339_11(AP003339|pid:none) Oryza sativa Japonica Group genom... 41 0.19
(Q5HPJ3) RecName: Full=Nuclease sbcCD subunit C; &CP000029_897(... 41 0.19
AC007070_8(AC007070|pid:none) Arabidopsis thaliana chromosome 2 ... 40 0.25
BC124485_1(BC124485|pid:none) Danio rerio zgc:153893, mRNA (cDNA... 40 0.25
BC072794_1(BC072794|pid:none) Xenopus laevis MGC80116 protein, m... 40 0.25
(Q9FKD9) RecName: Full=Putative E3 ubiquitin-protein ligase SINA... 40 0.25
T29562(T29562)hypothetical protein T12E12.1 - Caenorhabditis ele... 40 0.25
BC029501_1(BC029501|pid:none) Homo sapiens ring finger protein 1... 40 0.32
AM477118_1(AM477118|pid:none) Vitis vinifera contig VV78X175812.... 40 0.32
AF315735_1(AF315735|pid:none) Arabidopsis thaliana PRLI-interact... 40 0.32
DQ653034_1(DQ653034|pid:none) Arabidopsis thaliana clone 0000019... 40 0.32
BC074178_1(BC074178|pid:none) Xenopus laevis MGC82010 protein, m... 40 0.32
BT079546_1(BT079546|pid:none) Esox lucius clone eluc-evq-520-163... 40 0.32
AL161541_19(AL161541|pid:none) Arabidopsis thaliana DNA chromoso... 40 0.32
AF446353_1(AF446353|pid:none) Arabidopsis thaliana AT4g15420/dl3... 40 0.32
EU963414_1(EU963414|pid:none) Zea mays clone 262031 zinc finger,... 40 0.42
EF146920_1(EF146920|pid:none) Populus trichocarpa clone WS01223_... 39 0.55
AP006537_3(AP006537|pid:none) Lotus japonicus genomic DNA, chrom... 39 0.55
AC150786_17(AC150786|pid:none) Medicago truncatula clone mth2-17... 39 0.55
(Q9SKC2) RecName: Full=Probable E3 ubiquitin-protein ligase ARI1... 39 0.55
DQ446587_1(DQ446587|pid:none) Arabidopsis thaliana clone pENTR22... 39 0.55
AY129504_1(AY129504|pid:none) Bos taurus cysteine and histidine-... 39 0.55
AJ518952_1(AJ518952|pid:none) Bos taurus partial cyhr1 gene for ... 39 0.55
(Q9SKC4) RecName: Full=Probable E3 ubiquitin-protein ligase ARI1... 39 0.72
CR942471_1(CR942471|pid:none) Xenopus tropicalis finished cDNA, ... 39 0.72
(Q5BIY5) RecName: Full=RING finger protein 145; &BC091708_1(BC0... 39 0.72
(Q0IJ20) RecName: Full=RING finger protein 145; &BC121248_1(BC1... 39 0.72
CP001577_362(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 39 0.72
(Q2TBT8) RecName: Full=RING finger protein 151; &BC109671_1(BC1... 39 0.72
AK118376_1(AK118376|pid:none) Arabidopsis thaliana At1g01350 mRN... 39 0.72
DQ812520_2(DQ812520|pid:none) Spironucleus barkhanus isolate Sp3... 39 0.72
CP000263_260(CP000263|pid:none) Buchnera aphidicola str. Cc (Cin... 39 0.94
BC122801_1(BC122801|pid:none) Bos taurus XIAP associated factor ... 39 0.94
AY190961_4(AY190961|pid:none) Drosophila willistoni clone DWIF01... 39 0.94
AM502225_10(AM502225|pid:none) Leishmania infantum chromosome 7. 38 1.2
BC134929_1(BC134929|pid:none) Danio rerio zgc:162228, mRNA (cDNA... 38 1.2
AF019980_1(AF019980|pid:none) Dictyostelium discoideum ZipA (zip... 38 1.6
BT001981_1(BT001981|pid:none) Arabidopsis thaliana expressed pro... 38 1.6
AP003046_5(AP003046|pid:none) Oryza sativa Japonica Group genomi... 38 1.6
AM484034_2(AM484034|pid:none) Vitis vinifera contig VV78X069996.... 38 1.6
DQ094832_1(DQ094832|pid:none) Crimean-Congo hemorrhagic fever vi... 38 1.6
AM502246_189(AM502246|pid:none) Leishmania infantum chromosome 28. 38 1.6
CR954211_255(CR954211|pid:none) Ostreococcus tauri strain OTTH05... 38 1.6
AY136406_1(AY136406|pid:none) Arabidopsis thaliana putative prot... 38 1.6
AE014297_367(AE014297|pid:none) Drosophila melanogaster chromoso... 37 2.1
AK075101_1(AK075101|pid:none) Homo sapiens cDNA FLJ90620 fis, cl... 37 2.1
AK304228_1(AK304228|pid:none) Homo sapiens cDNA FLJ55623 complet... 37 2.1
BC042684_1(BC042684|pid:none) Homo sapiens ring finger protein 1... 37 2.1
AK294323_1(AK294323|pid:none) Homo sapiens cDNA FLJ60012 complet... 37 2.1
BC021527_1(BC021527|pid:none) Mus musculus zinc finger protein 5... 37 2.1
(Q96MT1) RecName: Full=RING finger protein 145; &AX213274_1(AX2... 37 2.1
BC090732_1(BC090732|pid:none) Danio rerio ZNF41 protein, mRNA (c... 37 2.1
AE014297_366(AE014297|pid:none) Drosophila melanogaster chromoso... 37 2.1
AK032299_1(AK032299|pid:none) Mus musculus adult male olfactory ... 37 2.1
BC149767_1(BC149767|pid:none) Bos taurus ring finger protein 145... 37 2.1
BC148080_1(BC148080|pid:none) Bos taurus ring finger protein 145... 37 2.1
BC155766_1(BC155766|pid:none) Danio rerio ZNF41 protein, mRNA (c... 37 2.1
AK056513_1(AK056513|pid:none) Homo sapiens cDNA FLJ31951 fis, cl... 37 2.1
BC143267_1(BC143267|pid:none) Homo sapiens uveal autoantigen wit... 37 2.7
(Q9BZF9) RecName: Full=Uveal autoantigen with coiled-coil domain... 37 2.7
AY900143_1(AY900143|pid:none) Crimean-Congo hemorrhagic fever vi... 37 2.7
DQ211627_1(DQ211627|pid:none) Crimean-Congo hemorrhagic fever vi... 37 2.7
(Q08CH8) RecName: Full=Cysteine and histidine-rich protein 1; &... 37 2.7
DQ019222_1(DQ019222|pid:none) Crimean-Congo hemorrhagic fever vi... 37 2.7
AY363113_1(AY363113|pid:none) Oryzias latipes zinc finger protei... 37 2.7
DQ211626_1(DQ211626|pid:none) Crimean-Congo hemorrhagic fever vi... 37 2.7
AK120816_1(AK120816|pid:none) Oryza sativa Japonica Group cDNA c... 37 2.7
AM294261_1(AM294261|pid:none) Drosophila melanogaster CG4973 gen... 37 2.7
AJ784228_1(AJ784228|pid:none) Suberites domuncula mRNA for tumou... 37 2.7
(Q9FKD5) RecName: Full=Putative E3 ubiquitin-protein ligase SINA... 37 2.7
AF322916_1(AF322916|pid:none) Homo sapiens uveal autoantigen mRN... 37 2.7
BC016881_1(BC016881|pid:none) Homo sapiens uveal autoantigen wit... 37 2.7
AY363112_1(AY363112|pid:none) Danio rerio zinc finger protein 18... 37 2.7
BC055485_1(BC055485|pid:none) Mus musculus ring finger protein 1... 37 3.6
BC031540_1(BC031540|pid:none) Mus musculus tripartite motif-cont... 37 3.6
AB208857_1(AB208857|pid:none) Homo sapiens mRNA for ariadne homo... 37 3.6
(Q1XHU0) RecName: Full=Tripartite motif-containing protein 39; ... 37 3.6
AB110937_1(AB110937|pid:none) Homo sapiens TRIM39 gene for TRIM3... 37 3.6
BT066827_1(BT066827|pid:none) Zea mays full-length cDNA clone ZM... 37 3.6
EU973199_1(EU973199|pid:none) Zea mays clone 394795 hypothetical... 37 3.6
AL662795_3(AL662795|pid:none) Human DNA sequence from clone XXba... 37 3.6
AL662795_2(AL662795|pid:none) Human DNA sequence from clone XXba... 37 3.6
AL662795_4(AL662795|pid:none) Human DNA sequence from clone XXba... 37 3.6
EU918200_2(EU918200|pid:none) Zea mays transcription factor IIIA... 37 3.6
AK220298_1(AK220298|pid:none) Mus musculus mRNA for mKIAA4179 pr... 37 3.6
AP009557_5(AP009557|pid:none) Sus scrofa genomic DNA, chromosome... 37 3.6
(Q6MFZ5) RecName: Full=Tripartite motif-containing protein 39; A... 37 3.6
(Q9ESN2) RecName: Full=Tripartite motif-containing protein 39; A... 37 3.6
(Q5SWK7) RecName: Full=RING finger protein 145; &AL603913_1(AL6... 37 3.6
AK043002_1(AK043002|pid:none) Mus musculus 7 days neonate cerebe... 37 3.6
AK053507_1(AK053507|pid:none) Mus musculus 0 day neonate eyeball... 37 3.6
BC051064_1(BC051064|pid:none) Mus musculus ring finger protein 1... 37 3.6
AK014408_1(AK014408|pid:none) Mus musculus 12 days embryo embryo... 37 3.6
BT062802_1(BT062802|pid:none) Zea mays full-length cDNA clone ZM... 37 3.6
AL844506_117(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 36 4.7
AF367964_1(AF367964|pid:none) Monopterus albus zinc finger prote... 36 4.7
(O60106) RecName: Full=LON peptidase N-terminal domain and RING ... 36 4.7
BT060732_1(BT060732|pid:none) Zea mays full-length cDNA clone ZM... 36 4.7
EF434383_1(EF434383|pid:none) Zea mays SINA3 mRNA, complete cds. 36 4.7
AK072985_1(AK072985|pid:none) Oryza sativa Japonica Group cDNA c... 36 4.7
(Q84K34) RecName: Full=E3 ubiquitin-protein ligase SINA-like 10;... 36 4.7
AY119482_1(AY119482|pid:none) Drosophila melanogaster GH07166 fu... 36 4.7
(Q58DH1) RecName: Full=XIAP-associated factor 1; 36 4.7
EU966994_1(EU966994|pid:none) Zea mays clone 298706 ubiquitin li... 36 6.1
AF387786_1(AF387786|pid:none) Drosophila melanogaster TRC8 mRNA,... 36 6.1
AM294272_1(AM294272|pid:none) Drosophila simulans CG4973 gene, s... 36 6.1
EF028165_1(EF028165|pid:none) Homo sapiens XIAP-associated facto... 36 6.1
AY069375_1(AY069375|pid:none) Drosophila melanogaster LD08152 fu... 36 6.1
AM294262_1(AM294262|pid:none) Drosophila melanogaster CG4973 gen... 36 6.1
BT001260_1(BT001260|pid:none) Drosophila melanogaster AT02461 fu... 36 6.1
BT039387_1(BT039387|pid:none) Zea mays full-length cDNA clone ZM... 36 6.1
FM245332_1(FM245332|pid:none) Drosophila melanogaster CG4973 gen... 36 6.1
BC142184_1(BC142184|pid:none) Bos taurus bifunctional apoptosis ... 36 6.1
AC146570_3(AC146570|pid:none) Medicago truncatula clone mth2-103... 36 6.1
EF434382_1(EF434382|pid:none) Zea mays SINA5 mRNA, complete cds. 36 6.1
AE014297_4561(AE014297|pid:none) Drosophila melanogaster chromos... 36 6.1
AY122250_1(AY122250|pid:none) Drosophila melanogaster SD05665 fu... 36 6.1
AM294267_1(AM294267|pid:none) Drosophila melanogaster CG4973 gen... 36 6.1
(Q7KRW1) RecName: Full=Protein TRC8 homolog; &AE014297_4560(AE0... 36 6.1
AE014297_2865(AE014297|pid:none) Drosophila melanogaster chromos... 36 6.1
CR382135_295(CR382135|pid:none) Debaryomyces hansenii strain CBS... 36 6.1
AM461336_4(AM461336|pid:none) Vitis vinifera contig VV78X142132.... 36 6.1
AE014297_4558(AE014297|pid:none) Drosophila melanogaster chromos... 36 6.1
CR380948_212(CR380948|pid:none) Candida glabrata strain CBS138 c... 36 6.1
AM294270_1(AM294270|pid:none) Drosophila melanogaster CG4973 gen... 36 6.1
AY145471_48(AY145471|pid:none) Rachiplusia ou multiple nucleopol... 36 6.1
(Q6GR09) RecName: Full=Speckle-type POZ protein-like; &BC071125... 35 8.0
AY190949_3(AY190949|pid:none) Drosophila pseudoobscura clone DPS... 35 8.0
BC153692_1(BC153692|pid:none) Xenopus tropicalis cDNA clone MGC:... 35 8.0
CP000806_361(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul... 35 8.0
AY532606_62(AY532606|pid:none) Rock bream iridovirus strain RBIV... 35 8.0
BT034805_1(BT034805|pid:none) Zea mays full-length cDNA clone ZM... 35 8.0
AY815260_1(AY815260|pid:none) Schistosoma japonicum SJCHGC06586 ... 35 8.0
AB212669_1(AB212669|pid:none) Red sea bream iridovirus gene for ... 35 8.0
DQ382373_1(DQ382373|pid:none) HIV-1 isolate 05ZAFV15 from South ... 35 8.0
CT005266_189(CT005266|pid:none) Leishmania major strain Friedlin... 35 8.0
Z19156_3(Z19156|pid:none) Caenorhabditis elegans Cosmid T02C1, c... 35 8.0
AY190962_2(AY190962|pid:none) Drosophila willistoni clone DWIF01... 35 8.0
T50561(T50561) SINA1 protein [imported] - Vitis vinifera &Y1847... 35 8.0
BT069854_1(BT069854|pid:none) Zea mays full-length cDNA clone ZM... 35 8.0
AK297067_1(AK297067|pid:none) Homo sapiens cDNA FLJ56680 complet... 35 8.0
(P53769) RecName: Full=Pre-mRNA-splicing factor CWC24; AltName: ... 35 8.0
AM494965_200(AM494965|pid:none) Leishmania braziliensis chromoso... 35 8.0
>A29361(A29361) DG17 protein - slime mold (Dictyostelium discoideum)
&M18106_1(M18106|pid:none)
Length = 458
Score = 192 bits (488), Expect = 4e-47
Identities = 103/296 (34%), Positives = 152/296 (51%), Gaps = 16/296 (5%)
Frame = +1
Query: 58 IQYNLTDIFYEDVNIEK---YSCSICYESVYKKEIYQCKEIHWFCKTCWAESLFKKKECM 228
I++ + DI + +++K Y+C IC+E +YKK+IYQCK H CK CW +SL KKECM
Sbjct: 5 IKFTINDILFNQESLQKKNKYTCPICFEFIYKKQIYQCKSGHHACKECWEKSLETKKECM 64
Query: 229 ICRCIVKSISELSRNRFIEQDFLNIKVNCPNSFKYXXXXXXXXXXXXXXXX--------- 381
C+ +V S ++LSR +E+ F + C SF
Sbjct: 65 TCKSVVNSYNDLSRCLMVERAFDKKECCCIYSFNEQIVEGGTNCSPPDGASVQNQRNLIK 124
Query: 382 ----GCKDIITIGEIEKHLKQCKFTHIKCKFIGCNKIIRLNQVEKHEKEQCEFRLEYCRY 549
GCK+ I + +I+ HL C++ + C F GC KI+R+N + K F+L C +
Sbjct: 125 DEENGCKEKIEVDQIDSHLINCQYKFVTCSFKGCEKILRMNSI----KMNGGFKLVTCDF 180
Query: 550 CDTDGITSRSLENHYKECPKFIVKCSENGCTVQLERSQLESHIEKQCQMVMIDCPYKIYG 729
C D I + LE HYK CP + CS+ GC+V++ER + HIE C I C Y G
Sbjct: 181 CKRDDIKKKELETHYKTCPMVPIDCSQ-GCSVKIERKSIIDHIENDCCNTQIPCKYFEQG 239
Query: 730 CEQSNRFPKSNLTQHLSSINHTLAMGSMIESQSLQIKETNIKYENLLNKINKLEQL 897
C+ + +S L HL +NH MG +IE + Q+ ++ ++ LL KI L L
Sbjct: 240 CKVEMK--RSELQNHLERVNHQNYMGILIEKLTNQVGQSKKTHDELLKKIEDLSLL 293
Score = 78.6 bits (192), Expect = 8e-13
Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 8/279 (2%)
Frame = +3
Query: 1164 LFTHIEKQCQMVMIDCPYKIYGCEQSNRFPKSNLTQHLSSINHTLAMGSMIESQSLQIKE 1343
+ HIE C I C Y GC+ + +S L HL +NH MG +IE + Q+ +
Sbjct: 218 IIDHIENDCCNTQIPCKYFEQGCKVEMK--RSELQNHLERVNHQNYMGILIEKLTNQVGQ 275
Query: 1344 TNIKYENLLNKINKLEQLETESKCDQLYDKFYQFESKIDKKLNNLQLDLYPKDNXXXXXX 1523
+ ++ LL KK+ +L L +
Sbjct: 276 SKKTHDELL------------------------------KKIEDLSLLV----------- 294
Query: 1524 XXXXXXXXXXXXXRIKFDDLFEKVSKVNSYFINGCLLKYKNRWSISNYLTESRKY---RK 1694
IKF D K +V ++ C Y+N+W ISNY + ++ +
Sbjct: 295 --------------IKFSDACLK-KQVLPKALDICSNGYRNKWIISNYSSVAKSKLNCQA 339
Query: 1695 ITSPSFKIYDKKFKLVIYPQGKDDGSYTSLFLKSDSI---NPIKVFYKFVLLNFKDESKN 1865
++SP I F++ +YP+G ++ Y SL+L+ ++I N +KV Y F L+N D+SK+
Sbjct: 340 LSSPMLSILSHLFQVCVYPKGDENKEYISLYLRVNNIEEPNSLKVEYSFTLVNVLDKSKS 399
Query: 1866 LIFK--NKSIMDKEKSVGCHYFIKSTEPGKKPEVWLKDD 1976
+ K K + + G F+ S + K WL +D
Sbjct: 400 ITKKEDKKRVFISSEGWGWGKFLLS-DLINKENGWLSND 437
Score = 45.4 bits (106), Expect = 0.008
Identities = 62/305 (20%), Positives = 114/305 (37%), Gaps = 48/305 (15%)
Frame = +1
Query: 415 EKHLKQCKFTHIKCK------------FIGCNKII-------RLNQVEK-HEKEQCEFRL 534
+K + QCK H CK + C ++ R VE+ +K++C
Sbjct: 36 KKQIYQCKSGHHACKECWEKSLETKKECMTCKSVVNSYNDLSRCLMVERAFDKKECCCIY 95
Query: 535 EYCRYCDTDGITSRSLENHYKECPKFIVKCSENGCTVQLERSQLESHIEKQCQMVMIDCP 714
+ G + + + ++K ENGC ++E Q++SH+ CQ + C
Sbjct: 96 SFNEQIVEGGTNCSPPDGASVQNQRNLIKDEENGCKEKIEVDQIDSHL-INCQYKFVTCS 154
Query: 715 YKIYGCEQSNRFPKSNLTQHLSSINHTLAMGSMIESQSLQIKETNIK---------YENL 867
+K GCE+ R + + I+ + L ET+ K +
Sbjct: 155 FK--GCEKILRMNSIKMNGGFKLVTCDFCKRDDIKKKEL---ETHYKTCPMVPIDCSQGC 209
Query: 868 LNKINK---LEQLETESKCDQLYDKFYQFESKIDKKLNNLQLDLYPKDNXXXXXXXXXXX 1038
KI + ++ +E + Q+ K+++ K++ K + LQ L + N
Sbjct: 210 SVKIERKSIIDHIENDCCNTQIPCKYFEQGCKVEMKRSELQNHL-ERVNHQNYMGILIEK 268
Query: 1039 XXXXXXXXRIKFDDLFEKVSKVNSY---FINGCLLK-------------YKNRWSISNYL 1170
+ D+L +K+ ++ F + CL K Y+N+W ISNY
Sbjct: 269 LTNQVGQSKKTHDELLKKIEDLSLLVIKFSDACLKKQVLPKALDICSNGYRNKWIISNYS 328
Query: 1171 HTLKN 1185
K+
Sbjct: 329 SVAKS 333
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,419,439,243
Number of extensions: 43635497
Number of successful extensions: 121895
Number of sequences better than 10.0: 277
Number of HSP's gapped: 121374
Number of HSP's successfully gapped: 326
Length of query: 674
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 539
Effective length of database: 614,245,399
Effective search space: 331078270061
Effective search space used: 331078270061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
1 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |