NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14991-1
Contig ID Contig-U14991-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U14991-1 (Contig-U14991-1Q) /CSM_Contig/Contig-U14991-1Q.Seq.d
GGGAACACCTCTTAAACATATAAATAAAAATAAATAATAAATATAATAAA
TAAATAGTAAATAATAAATAGTAAATAATAAATAATAATAAATAATAATA
ATAATATTTTAAAATGGGTCATCACCACCACTATGCTTATACAACCACAA
CTCCATATATCATGCCAGGAGTTCCTCCACCAGTTGTCTATGGTGCTCCT
CCACCAATGATGGTAGTTCCACCTCCAATGGGTATCGTTCAACCACAAGT
ATTCGTTCAAGGCATGGTCCCTCCACCAGTTGTCTATGGTGCTCCTCCAC
CAATGATGGGAGTTCCACCTCCAATGGGCCAACCATTCTATCCACCATCC
TATTATTAGAAGCAATATCAACTAACAATTATCAATGAGCAACAAAAAAA
AAAAAAAAAACAAAAACAAAAAAAAACAAACCAATAATTCTATATATGTA
ATTAATAAATAATTCTCTTTGTACAAATTCTAAAAGGAAAAAAAAAAACA
AAAAAACAAAAAAAAACAAAATTTTATTTAGTTCGCCATTCGAAATAAAT
ATTACATTTATTATATTAAATTCTTTAAAAAAAAATAAAAAATAAAAAAT
AAAAAAAAATAAAAAAAATAAAGGTTAAGAATGAAAA
Gap no gap
Contig length 637
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7003871
End point 7003235
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U14991
List of clone(s) 

est1=FC-BC11E,1,637
est2=AFH440F,38,403
est3=AFH440Z,38,366
est4=SLC426E,59,393
est5=SSC422F,309,540
Translated Amino Acid sequence 
gtplkhinknk**i**insk**ivnnk***iiiiif*NGSSPPLCLYNHNSIYHARSSST
SCLWCSSTNDGSSTSNGYRSTTSIRSRHGPSTSCLWCSSTNDGSSTSNGPTILSTILLLE
AISTNNYQ*atkkkkktktkknkpiilym*linnslctnskrkkknkktkknkilfsspf
einitfiilnslkknkk*kikknkknkg*e*k
Translated Amino Acid sequence (All Frames) 
Frame A:
gnts*tyk*k*iiniink**iinsk**iiinnnnnilkwvitttmliqpqlhiscqeflh
qlsmvllhq*w*fhlqwvsfnhkysfkawslhqlsmvllhq*wefhlqwanhsihhpiir
snin*qlsmsnkkkkknknkkkqtnnsiyvink*fslykf*kekkkqknkkkqnfi*fai
rnkyyiyyikffkkk*kiknkkk*kk*rlrmk


Frame B:
gtplkhinknk**i**insk**ivnnk***iiiiif*NGSSPPLCLYNHNSIYHARSSST
SCLWCSSTNDGSSTSNGYRSTTSIRSRHGPSTSCLWCSSTNDGSSTSNGPTILSTILLLE
AISTNNYQ*atkkkkktktkknkpiilym*linnslctnskrkkknkktkknkilfsspf
einitfiilnslkknkk*kikknkknkg*e*k


Frame C:
ehllni*ikinnkynk*ivnnk**iinnnk****yfkmghhhhyayttttpyimpgvppp
vvygapppmmvvpppmgivqpqvfvqgmvpppvvygapppmmgvpppmgqpfyppsyy*k
qyqltiineqqkkkkkqkqkktnq*fyicn**iilfvqilkgkkktkkqkktkfylvrhs
k*ilhlly*il*kkiknkk*kkikkikvkne
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U14991-1 (Contig-U14991-1Q)
/CSM_Contig/Contig-U14991-1Q.Seq.d
         (637 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14991-1 (Contig-U14991-1Q) /CSM_Contig/Conti...   569  e-162
Contig-U16059-1 (Contig-U16059-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11244-1 (Contig-U11244-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U13985-1 (Contig-U13985-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U12301-1 (Contig-U12301-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U09649-1 (Contig-U09649-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U04375-1 (Contig-U04375-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U16434-1 (Contig-U16434-1Q) /CSM_Contig/Conti...    32  0.99
Contig-U14623-1 (Contig-U14623-1Q) /CSM_Contig/Conti...    32  0.99
Contig-U13955-1 (Contig-U13955-1Q) /CSM_Contig/Conti...    32  0.99

>Contig-U14991-1 (Contig-U14991-1Q) /CSM_Contig/Contig-U14991-1Q.Seq.d
          Length = 637

 Score =  569 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 107 ttttaaaatgggtcatcaccaccactatgcttatacaaccacaactccatatatcatgcc 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttttaaaatgggtcatcaccaccactatgcttatacaaccacaactccatatatcatgcc 166

                                                                       
Query: 167 aggagttcctccaccagttgtctatggtgctcctccaccaatgatggtagttccacctcc 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aggagttcctccaccagttgtctatggtgctcctccaccaatgatggtagttccacctcc 226

                                                                       
Query: 227 aatgggtatcgttcaaccacaagtattcgttcaaggcatggtccctccaccagttgtcta 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aatgggtatcgttcaaccacaagtattcgttcaaggcatggtccctccaccagttgtcta 286

                                                                       
Query: 287 tggtgctcctccaccaatgatgggagttccacctccaatgggccaaccattctatccacc 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tggtgctcctccaccaatgatgggagttccacctccaatgggccaaccattctatccacc 346

                                                          
Query: 347 atcctattattagaagcaatatcaactaacaattatcaatgagcaac 393
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atcctattattagaagcaatatcaactaacaattatcaatgagcaac 393


 Score =  121 bits (61), Expect = 1e-27
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                       
Query: 427 caaaccaataattctatatatgtaattaataaataattctctttgtacaaattctaaaag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 caaaccaataattctatatatgtaattaataaataattctctttgtacaaattctaaaag 486

            
Query: 487 g 487
           |
Sbjct: 487 g 487


 Score =  109 bits (55), Expect = 5e-24
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                  
Query: 522 ttttatttagttcgccattcgaaataaatattacatttattatattaaattcttt 576
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttttatttagttcgccattcgaaataaatattacatttattatattaaattcttt 576


 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 619 taaaggttaagaatgaaaa 637
           |||||||||||||||||||
Sbjct: 619 taaaggttaagaatgaaaa 637


>Contig-U16059-1 (Contig-U16059-1Q) /CSM_Contig/Contig-U16059-1Q.Seq.d
          Length = 2537

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 332  accattctatccaccatcctattattag 359
            ||| |||||||| |||||||||||||||
Sbjct: 2510 accnttctatccgccatcctattattag 2537


>Contig-U11244-1 (Contig-U11244-1Q) /CSM_Contig/Contig-U11244-1Q.Seq.d
          Length = 3820

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 294  cctccaccaatgatgggag 312
            |||||||||||||||||||
Sbjct: 1856 cctccaccaatgatgggag 1874


 Score = 32.2 bits (16), Expect = 0.99
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 198  cctccaccaatgatgg 213
            ||||||||||||||||
Sbjct: 1856 cctccaccaatgatgg 1871


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8422
Number of Sequences: 8402
Number of extensions: 8422
Number of successful extensions: 861
Number of sequences better than 10.0: 78
length of query: 637
length of database: 8,075,542
effective HSP length: 16
effective length of query: 621
effective length of database: 7,941,110
effective search space: 4931429310
effective search space used: 4931429310
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1. 8
Homology vs DNA 
Query= Contig-U14991-1 (Contig-U14991-1Q) /CSM_Contig/Contig-U14991-1Q.Seq.d
         (637 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C25716) Dictyostelium discoideum gamete cDNA, clone FC-BC11.     569   0.0    5
(AC116961) Dictyostelium discoideum chromosome 2 map 369654-...   569   0.0    3
(AU034270) Dictyostelium discoideum slug cDNA, clone SLC426.      569   e-158  1
(BJ326151) Dictyostelium discoideum cDNA clone:dda15p10, 5' ...   569   e-158  1
(AU060969) Dictyostelium discoideum slug cDNA, clone SLC426.      553   e-153  1
(BJ342931) Dictyostelium discoideum cDNA clone:dda15p10, 3' ...   515   e-142  1
(AU071738) Dictyostelium discoideum slug cDNA, clone SSC422.      125   3e-58  3
(BJ401918) Dictyostelium discoideum cDNA clone:dds19g22, 3' ...    76   2e-09  1
(DN607650) EST02861 Sporophyte cDNA Library Porphyra haitane...    44   0.003  2
(DN605249) EST00460 Sporophyte cDNA Library Porphyra haitane...    40   0.004  2
(AV171704) Mus musculus 17-day embryo head cDNA, partial seq...    40   0.30   2
(CT033841) Zebrafish DNA sequence from clone RP71-84K24 in l...    48   0.39   1
(AL359377) Human DNA sequence from clone RP11-96C4 on chromo...    48   0.39   1
(BX927183) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   0.39   1
(AC021404) Homo sapiens clone RP11-29E20, WORKING DRAFT SEQU...    48   0.39   1
(CZ863000) OC__Ba0257E09.r OC__Ba Oryza coarctata genomic cl...    48   0.39   1
(CZ721109) OC__Ba0046I09.f OC__Ba Oryza coarctata genomic cl...    48   0.39   1
(AC215575) Procavia capensis clone CH280-298A7, WORKING DRAF...    36   0.81   2
(AC215584) Procavia capensis clone CH280-500K10, WORKING DRA...    36   0.81   2
(AC022294) Homo sapiens 3 BAC RP11-4B14 (Roswell Park Cancer...    46   1.5    1
(AC079737) Homo sapiens chromosome 3 clone RP11-238N18, WORK...    46   1.5    1
(AC218234) Bos taurus clone CH240-290A13, WORKING DRAFT SEQU...    46   1.5    1
(BH008830) ef20f01.x1 TO1000 Brassica oleracea genomic clone...    46   1.5    1
(ET930871) CHO_OF253xi22r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.5    1
(ET930800) CHO_OF253xi22f1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.5    1
(AL403660) T3 end of clone AT0AA010A11 of library AT0AA from...    46   1.5    1
(CR820219) GR0AAA5AC08FM1 INRA BAC Bos taurus genomic clone ...    46   1.5    1
(CR801004) GR0AAA2DE03FM1 INRA BAC Bos taurus genomic clone ...    46   1.5    1
(BZ774258) mcv88e06.b1 HFOSMID007 Homo sapiens genomic, geno...    46   1.5    1
(BB978329) Plasmodium berghei strain ANKA cDNA clone:OK00836...    46   1.5    1
(X88896) T.rubrum ND4, ATP6, SSUrRNA, ND6, COXIII, ATP8, and...    36   2.1    3
(EJ524853) 1092955176449 Global-Ocean-Sampling_GS-29-01-01-1...    38   3.1    2
(CX117945) EI112D08 A normalized whole-life-cycle cDNA libra...    40   4.0    2
(FF610329) G825P5152FB9.T0 Acorn worm normalized gastrula pE...    34   4.0    2
(BB371609) Mus musculus 16 days embryo head cDNA, RIKEN full...    40   4.3    2
(CL646783) CH213-123I16.T7 CH213 Gasterosteus aculeatus geno...    36   4.6    2
(BX511223) Zebrafish DNA sequence from clone DKEYP-96B6 in l...    44   6.0    1
(BK001429) TPA_exp: Homo sapiens NOELIN3 (OLFM3) gene, compl...    44   6.0    1
(AC131762) Mus musculus BAC clone RP24-228J18 from chromosom...    44   6.0    1
(AM456065) Vitis vinifera contig VV78X082812.5, whole genome...    44   6.0    1
(AM439186) Vitis vinifera contig VV78X185509.6, whole genome...    44   6.0    1
(AC152407) Medicago truncatula clone mth2-77l23, complete se...    44   6.0    1
(DJ084883) Bombyx densovirus type-2 susceptibility gene and ...    44   6.0    1
(DJ084878) Bombyx densovirus type-2 susceptibility gene and ...    44   6.0    1
(DD010736) Diagnosis of known genetic Parameters within the ...    44   6.0    1
(AX344563) Sequence 14 from Patent WO0200932.                      44   6.0    1
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    44   6.0    1
(AL356280) Human DNA sequence from clone RP11-82O2 on chromo...    44   6.0    1
(AC020589) Homo sapiens BAC clone RP11-143G24 from 4, comple...    44   6.0    1
(AC152880) Bos taurus clone CH240-11I7, WORKING DRAFT SEQUEN...    44   6.0    1
(CU467532) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CU302282) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CT027752) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   6.0    1
(BX005246) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.0    1
(AL158170) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.0    1
(ET444378) fcg2x.pk146.h9.f C. graminicola genomic sequence ...    44   6.0    1
(CZ935350) 259267 Tomato EcoRI BAC Library Solanum lycopersi...    44   6.0    1
(CZ538584) SRAA-aad20e09.g1 Strongyloides ratti whole genome...    44   6.0    1
(CR499930) mth2-177A11FM1 BAC end, cultivar Jemalong A17 of ...    44   6.0    1
(CE826819) tigr-gss-dog-17000318995481 Dog Library Canis lup...    44   6.0    1
(EL503192) F11_PFLAB1-LARGE-PLATE13B.AB1 Blood stage Plasmod...    44   6.0    1
(EL497812) PFLAB1-L_F3_-P17A_A10_02.AB1 Blood stage Plasmodi...    44   6.0    1
(DB896323) Populus nigra mRNA, clone: PnFL2-019_N03, 3'end.        44   6.0    1
(AU006171) Bombyx mori cDNA, clone wv40590.                        44   6.0    1
(BX351794) human full-length cDNA 3-PRIME end of clone CS0DI...    44   6.0    1
(FK199440) XABT210577.g1 Gateway compatible cien cDNA librar...    44   6.0    1
(FF743893) XABT54663.rev Gateway compatible cien cDNA librar...    44   6.0    1
(CV165998) rsmsxl_005848.y1.scf cDNA Library of Salvia milti...    34   6.6    2
(CV166207) rsmsxl_006243.y1.scf cDNA Library of Salvia milti...    34   6.6    2
(FE255773) CAPH5763.rev CAPH Naegleria gruberi amoeba stage ...    30   7.8    3
(AC161037) Mus musculus chromosome 7, clone RP24-255H18, com...    38   8.2    2
(FE264059) CAZO3637.rev CAZO Naegleria gruberi Flagellate St...    30   8.4    3
(FE234192) CAPG2688.rev CAPG Naegleria gruberi amoeba stage ...    30   9.2    3
(BB219373) Mus musculus adult male aorta and vein cDNA, RIKE...    40   9.2    2
(ED397229) AUAC-aaw14h07.g1 Ascaris suum whole genome shotgu...    30   9.3    3
(BB148872) Mus musculus adult female vagina cDNA, RIKEN full...    40   9.4    2

>(C25716) Dictyostelium discoideum gamete cDNA, clone FC-BC11.
          Length = 637

 Score =  569 bits (287), Expect(5) = 0.0
 Identities = 287/287 (100%)
 Strand = Plus / Plus


Query: 107 ttttaaaatgggtcatcaccaccactatgcttatacaaccacaactccatatatcatgcc 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttttaaaatgggtcatcaccaccactatgcttatacaaccacaactccatatatcatgcc 166


Query: 167 aggagttcctccaccagttgtctatggtgctcctccaccaatgatggtagttccacctcc 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aggagttcctccaccagttgtctatggtgctcctccaccaatgatggtagttccacctcc 226


Query: 227 aatgggtatcgttcaaccacaagtattcgttcaaggcatggtccctccaccagttgtcta 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aatgggtatcgttcaaccacaagtattcgttcaaggcatggtccctccaccagttgtcta 286


Query: 287 tggtgctcctccaccaatgatgggagttccacctccaatgggccaaccattctatccacc 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tggtgctcctccaccaatgatgggagttccacctccaatgggccaaccattctatccacc 346


Query: 347 atcctattattagaagcaatatcaactaacaattatcaatgagcaac 393
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atcctattattagaagcaatatcaactaacaattatcaatgagcaac 393

 Score =  113 bits (57), Expect(5) = 0.0
 Identities = 57/57 (100%)
 Strand = Plus / Plus


Query: 431 ccaataattctatatatgtaattaataaataattctctttgtacaaattctaaaagg 487
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ccaataattctatatatgtaattaataaataattctctttgtacaaattctaaaagg 487

 Score =  109 bits (55), Expect(5) = 0.0
 Identities = 55/55 (100%)
 Strand = Plus / Plus


Query: 522 ttttatttagttcgccattcgaaataaatattacatttattatattaaattcttt 576
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttttatttagttcgccattcgaaataaatattacatttattatattaaattcttt 576

 Score = 34.2 bits (17), Expect(5) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 1  gggaacacctcttaaac 17
          |||||||||||||||||
Sbjct: 1  gggaacacctcttaaac 17

 Score = 30.2 bits (15), Expect(5) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 623 ggttaagaatgaaaa 637
           |||||||||||||||
Sbjct: 623 ggttaagaatgaaaa 637

 Score =  109 bits (55), Expect = 1e-19
 Identities = 58/59 (98%)
 Strand = Plus / Plus


Query: 270 cctccaccagttgtctatggtgctcctccaccaatgatgggagttccacctccaatggg 328
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 174 cctccaccagttgtctatggtgctcctccaccaatgatggtagttccacctccaatggg 232

 Score =  109 bits (55), Expect = 1e-19
 Identities = 58/59 (98%)
 Strand = Plus / Plus


Query: 174 cctccaccagttgtctatggtgctcctccaccaatgatggtagttccacctccaatggg 232
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 270 cctccaccagttgtctatggtgctcctccaccaatgatgggagttccacctccaatggg 328

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 487,438,387
Number of extensions: 29460448
Number of successful extensions: 2207890
Number of sequences better than 10.0: 76
Length of query: 637
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 614
Effective length of database: 93,106,754,628
Effective search space: 57167547341592
Effective search space used: 57167547341592
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.13
Homology vs Protein 
Query= Contig-U14991-1 (Contig-U14991-1Q) /CSM_Contig/Contig-U14991-1Q.Seq.d
         (637 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000099_1947(CP000099|pid:none) Methanosarcina barkeri str. Fus...    35   1.8
CP000301_2702(CP000301|pid:none) Rhodopseudomonas palustris BisB...    35   1.8
CP000086_131(CP000086|pid:none) Burkholderia thailandensis E264 ...    35   2.4
CP000151_3285(CP000151|pid:none) Burkholderia sp. 383 chromosome...    34   4.0
AC139706_7(AC139706|pid:none) Medicago truncatula clone mth2-28n...    33   5.3
CP001503_3257(CP001503|pid:none) Burkholderia glumae BGR1 chromo...    33   5.3
CP000141_2109(CP000141|pid:none) Carboxydothermus hydrogenoforma...    33   5.3
CP000440_3166(CP000440|pid:none) Burkholderia ambifaria AMMD chr...    33   6.9
CP001025_3034(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    33   6.9
CP000958_3116(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ...    33   6.9
CP001052_285(CP001052|pid:none) Burkholderia phytofirmans PsJN c...    33   9.0
CP000378_2492(CP000378|pid:none) Burkholderia cenocepacia AU 105...    33   9.0
CP000614_3244(CP000614|pid:none) Burkholderia vietnamiensis G4 c...    33   9.0

>CP000099_1947(CP000099|pid:none) Methanosarcina barkeri str.
           Fusaro, complete genome.
          Length = 110

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
 Frame = -3

Query: 248 LWLNDTHWRWNYHHW------WRSTIDNWWRNSWHDIW 153
           +W +D +WRW+ H W      WR    +WW +  H  W
Sbjct: 54  MWDDDHNWRWDGHSWYEREHNWRWDGHSWWDDRHHWRW 91

 Score = 33.1 bits (74), Expect = 6.9
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -3

Query: 281 NW-WRDHAL--NEYLWLNDTHWRWNYHHWWRSTIDNWW-RNSWHD 159
           NW W  H+    E+ W  D H  W+  H WR   + WW  N W D
Sbjct: 60  NWRWDGHSWYEREHNWRWDGHSWWDDRHHWRWDGNRWWDGNRWWD 104

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 572,486,654
Number of extensions: 8761268
Number of successful extensions: 22155
Number of sequences better than 10.0: 13
Number of HSP's gapped: 22112
Number of HSP's successfully gapped: 14
Length of query: 212
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 89
Effective length of database: 653,084,107
Effective search space: 58124485523
Effective search space used: 58124485523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.85  gvh: 0.49  alm: 0.44  top: 0.60  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 36.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for Contig-U14991-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0