Contig-U14983-1 |
Contig ID |
Contig-U14983-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
2186 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
5556768 |
End point |
5558955 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
4 |
Number of EST |
5 |
Link to clone list |
U14983 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1. 8 |
Homology vs DNA |
Query= Contig-U14983-1 (Contig-U14983-1Q) /CSM_Contig/Contig-U14983-1Q.Seq.d (2186 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 884 0.0 8 (BJ340123) Dictyostelium discoideum cDNA clone:dda11a22, 3' ... 878 0.0 5 (BJ344054) Dictyostelium discoideum cDNA clone:dda18d09, 3' ... 759 0.0 2 (BJ326856) Dictyostelium discoideum cDNA clone:dda18d09, 5' ... 884 0.0 2 (BJ361218) Dictyostelium discoideum cDNA clone:ddc16a12, 5' ... 367 0.0 7 (BJ364211) Dictyostelium discoideum cDNA clone:ddc30c21, 5' ... 367 e-165 4 (EU024863) Fragaria vesca subsp. americana clone fosmid 52I2... 40 0.52 2 (FC778509) CBGC11181.rev CBGC Lottia gigantea 15h 18h embryo... 32 0.54 3 (FC786911) CBGC1705.fwd CBGC Lottia gigantea 15h 18h embryos... 32 0.79 3 (FC782122) CBGC13511.fwd CBGC Lottia gigantea 15h 18h embryo... 32 0.81 3 (FC782121) CBGC13511.rev CBGC Lottia gigantea 15h 18h embryo... 32 0.81 3 (FC753664) CBBI7491.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 32 0.82 3 (FC753663) CBBI7491.rev CBBI Lottia gigantea 26h,37h,61h Lar... 32 0.82 3 (FC736688) CBBH1730.fwd CBBH Lottia gigantea 26h,37h,61h Lar... 32 0.82 3 (FC736687) CBBH1730.rev CBBH Lottia gigantea 26h,37h,61h Lar... 32 0.82 3 (FC755838) CBBI8980.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 32 0.82 3 (FC755837) CBBI8980.rev CBBI Lottia gigantea 26h,37h,61h Lar... 32 0.82 3 (FC782061) CBGC13470.fwd CBGC Lottia gigantea 15h 18h embryo... 32 0.83 3 (FC782060) CBGC13470.rev CBGC Lottia gigantea 15h 18h embryo... 32 0.83 3 (FC780694) CBGC12602.fwd CBGC Lottia gigantea 15h 18h embryo... 32 0.84 3 (FC806714) CBGC8461.fwd CBGC Lottia gigantea 15h 18h embryos... 32 0.86 3 (FC791937) CBGC21296.fwd CBGC Lottia gigantea 15h 18h embryo... 32 0.86 3 (FC779285) CBGC11700.fwd CBGC Lottia gigantea 15h 18h embryo... 32 0.89 3 (FC722482) CBBG14713.fwd CBBG Lottia gigantea 12,15,18h embr... 32 0.89 3 (FC722481) CBBG14713.rev CBBG Lottia gigantea 12,15,18h embr... 32 0.89 3 (FC787975) CBGC18447.fwd CBGC Lottia gigantea 15h 18h embryo... 32 0.91 3 (FC787974) CBGC18447.rev CBGC Lottia gigantea 15h 18h embryo... 32 0.91 3 (FC779284) CBGC11700.rev CBGC Lottia gigantea 15h 18h embryo... 32 0.91 3 (FC782174) CBGC13543.fwd CBGC Lottia gigantea 15h 18h embryo... 32 1.1 3 (DN740674) 1403168 MARC 7BOV Bos taurus cDNA 3', mRNA sequence. 48 1.4 1 (FC806483) CBGC7909.fwd CBGC Lottia gigantea 15h 18h embryos... 32 1.6 3 (EG663638) RCLGD07TP Castor bean cDNA library from leaves, 1... 38 3.2 3 (FE234000) CAPG2585.fwd CAPG Naegleria gruberi amoeba stage ... 30 3.9 4 (FE247684) CAPH1253.fwd CAPH Naegleria gruberi amoeba stage ... 30 4.4 4 (AZ930230) 474.dhz51b11.s1 Saccharomyces unisporus NRRL Y-15... 46 5.6 1 (FH684113) CHO_OF5071xc12r1.ab1 CHO_OF5 Nicotiana tabacum ge... 46 5.6 1 (EI485677) PV_GBa0099N22.r PV_GBa Phaseolus vulgaris genomic... 46 5.6 1 (BP961316) Euphorbia tirucalli mRNA, clone: ETC047B02, 5' end. 46 5.6 1 (DR172456) HF0004_H16:A Triphysaria versicolor (parasitic pl... 36 6.1 3 (BJ346173) Dictyostelium discoideum cDNA clone:dda30h02, 3' ... 32 7.2 3 (BJ334334) Dictyostelium discoideum cDNA clone:dda45p21, 5' ... 44 7.4 2 (CP000393) Trichodesmium erythraeum IMS101, complete genome. 34 7.6 2 (BJ341642) Dictyostelium discoideum cDNA clone:dda7f14, 3' e... 32 9.1 3
>(AC116960) Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. Length = 182870
Score = 884 bits (446), Expect(8) = 0.0 Identities = 446/446 (100%) Strand = Plus / Plus
Query: 669 atgatgaacaatggtggtatgttgaataatggtgttatgatgaacaatggtggtatgatg 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81285 atgatgaacaatggtggtatgttgaataatggtgttatgatgaacaatggtggtatgatg 81344
Query: 729 ccaatgaataatggaggtatgatgggaggatttggtggtatgatgccaatgaataatggt 788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81345 ccaatgaataatggaggtatgatgggaggatttggtggtatgatgccaatgaataatggt 81404
Query: 789 ggtatgatgggtggtgctaacaatatgggtggcatgaatttaggaatgaatgctatgtct 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81405 ggtatgatgggtggtgctaacaatatgggtggcatgaatttaggaatgaatgctatgtct 81464
Query: 849 ccaatgggtggtgctccaatgaataacaatatgggcgctatgaatttaggaatgaatgct 908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81465 ccaatgggtggtgctccaatgaataacaatatgggcgctatgaatttaggaatgaatgct 81524
Query: 909 atgtctccaatgggtggtgctccaatgaggtcaccagcagctgctggaaataactctttc 968 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81525 atgtctccaatgggtggtgctccaatgaggtcaccagcagctgctggaaataactctttc 81584
Query: 969 aatattactccaacttctgctactccaactccaccacaaccatctcaattctcttctttg 1028 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81585 aatattactccaacttctgctactccaactccaccacaaccatctcaattctcttctttg 81644
Query: 1029 gattctttaatgtttacttcatccccatctcaaccaaaacaatcacaaccatctcaatca 1088 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81645 gattctttaatgtttacttcatccccatctcaaccaaaacaatcacaaccatctcaatca 81704
Query: 1089 tttggtaacaatttcccaatcactgc 1114 |||||||||||||||||||||||||| Sbjct: 81705 tttggtaacaatttcccaatcactgc 81730
Score = 724 bits (365), Expect(8) = 0.0 Identities = 365/365 (100%) Strand = Plus / Plus
Query: 1769 gaattgatgtagttgtggcctcacttgttataatagaggtggttgtagttgtagttattt 1828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82383 gaattgatgtagttgtggcctcacttgttataatagaggtggttgtagttgtagttattt 82442
Query: 1829 ctacacatagacatccaccaccttcacaatatggatatagacagtcatcagttactggac 1888 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82443 ctacacatagacatccaccaccttcacaatatggatatagacagtcatcagttactggac 82502
Query: 1889 actctacaaaattcgttgtagagtgttcagaattttcatcacattgttttgggaaacata 1948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82503 actctacaaaattcgttgtagagtgttcagaattttcatcacattgttttgggaaacata 82562
Query: 1949 aatcagtagtgttacaattactttcatcacatctacaaccggcaatataagcgtgttcac 2008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82563 aatcagtagtgttacaattactttcatcacatctacaaccggcaatataagcgtgttcac 82622
Query: 2009 aacaagttccttctgtacaataatcaagtgtacatgcatcaccatcaccacaatctctat 2068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82623 aacaagttccttctgtacaataatcaagtgtacatgcatcaccatcaccacaatctctat 82682
Query: 2069 ctgctactacacaggtaccacataaagttctcttttgagaacaacttgttagatcatcaa 2128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82683 ctgctactacacaggtaccacataaagttctcttttgagaacaacttgttagatcatcaa 82742
Query: 2129 aacat 2133 ||||| Sbjct: 82743 aacat 82747
Score = 466 bits (235), Expect(8) = 0.0 Identities = 235/235 (100%) Strand = Plus / Plus
Query: 1356 caaacgatcaggggaacattggtcttcaaaatatttggaaataaaagtgtaactatgtct 1415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81970 caaacgatcaggggaacattggtcttcaaaatatttggaaataaaagtgtaactatgtct 82029
Query: 1416 tgatatttgataacaacaataatgtggaggacaatcaatattttcataacaaactgccat 1475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82030 tgatatttgataacaacaataatgtggaggacaatcaatattttcataacaaactgccat 82089
Query: 1476 tggtcttggtggtaaagttgagccagttgttgtggtacttgatgttgctccaattgtaga 1535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82090 tggtcttggtggtaaagttgagccagttgttgtggtacttgatgttgctccaattgtaga 82149
Query: 1536 tgaatagatagttgataattcagtggtatggcttacggttgttaggtcagttgtg 1590 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82150 tgaatagatagttgataattcagtggtatggcttacggttgttaggtcagttgtg 82204
Score = 367 bits (185), Expect(8) = 0.0 Identities = 185/185 (100%) Strand = Plus / Plus
Query: 176 aaccaccaacaccagttcaaacaaagagtaatgtatcattaattgatgaccaatggaata 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80794 aaccaccaacaccagttcaaacaaagagtaatgtatcattaattgatgaccaatggaata 80853
Query: 236 gcgcaccacaaggtaagaaatcattaatcgatgatgatttcaatggtccatctgttgcac 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80854 gcgcaccacaaggtaagaaatcattaatcgatgatgatttcaatggtccatctgttgcac 80913
Query: 296 cacaacaacaaccacatagtacctttgatccatttgttggttcaaaagtaagcagcaatg 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80914 cacaacaacaaccacatagtacctttgatccatttgttggttcaaaagtaagcagcaatg 80973
Query: 356 gtgct 360 ||||| Sbjct: 80974 gtgct 80978
Score = 172 bits (87), Expect(8) = 0.0 Identities = 87/87 (100%) Strand = Plus / Plus
Query: 18 cagaggatattcaactactaacccaagtaatcaatcacatggatttgttagaccatcaat 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80636 cagaggatattcaactactaacccaagtaatcaatcacatggatttgttagaccatcaat 80695
Query: 78 agcaaatggttttgcaacaactgaatt 104 ||||||||||||||||||||||||||| Sbjct: 80696 agcaaatggttttgcaacaactgaatt 80722
Score = 81.8 bits (41), Expect(8) = 0.0 Identities = 41/41 (100%) Strand = Plus / Plus
Query: 489 ctggtatgaatagtatgatgggaggtaacaataataacaat 529 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 81106 ctggtatgaatagtatgatgggaggtaacaataataacaat 81146
Score = 40.1 bits (20), Expect(8) = 0.0 Identities = 20/20 (100%) Strand = Plus / Plus
Query: 2135 atttctacaaataccatcac 2154 |||||||||||||||||||| Sbjct: 82750 atttctacaaataccatcac 82769
Score = 38.2 bits (19), Expect(8) = 0.0 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 470 gattccctacaccaccaac 488 ||||||||||||||||||| Sbjct: 81088 gattccctacaccaccaac 81106
Score = 105 bits (53), Expect(10) = 3e-47 Identities = 62/65 (95%) Strand = Plus / Plus
Query: 806 taacaatatgggtggcatgaatttaggaatgaatgctatgtctccaatgggtggtgctcc 865 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81488 taacaatatgggcgctatgaatttaggaatgaatgctatgtctccaatgggtggtgctcc 81547
Query: 866 aatga 870 ||||| Sbjct: 81548 aatga 81552
Score = 69.9 bits (35), Expect(10) = 3e-47 Identities = 38/39 (97%) Strand = Plus / Plus
Query: 761 tggtggtatgatgccaatgaataatggtggtatgatggg 799 ||||||||||||||||||||||||||| ||||||||||| Sbjct: 81332 tggtggtatgatgccaatgaataatggaggtatgatggg 81370
Score = 65.9 bits (33), Expect(10) = 3e-47 Identities = 42/45 (93%) Strand = Plus / Plus
Query: 708 atgaacaatggtggtatgatgccaatgaataatggaggtatgatg 752 ||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct: 81246 atgaataatggcggtatgatgccaatgaataatggtggtatgatg 81290
Score = 52.0 bits (26), Expect(10) = 3e-47 Identities = 32/34 (94%) Strand = Plus / Plus
Query: 669 atgatgaacaatggtggtatgttgaataatggtg 702 ||||||||||||||||| ||| |||||||||||| Sbjct: 81195 atgatgaacaatggtggcatgatgaataatggtg 81228
Score = 32.2 bits (16), Expect(10) = 3e-47 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 514 taacaataataacaat 529 |||||||||||||||| Sbjct: 80564 taacaataataacaat 80579
Score = 32.2 bits (16), Expect(10) = 3e-47 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1425 ataacaacaataatgt 1440 |||||||||||||||| Sbjct: 81742 ataacaacaataatgt 81757
Score = 30.2 bits (15), Expect(10) = 3e-47 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 1003 cacaaccatctcaat 1017 ||||||||||||||| Sbjct: 81688 cacaaccatctcaat 81702
Score = 28.2 bits (14), Expect(10) = 3e-47 Identities = 17/18 (94%) Strand = Plus / Plus
Query: 258 attaatcgatgatgattt 275 |||||| ||||||||||| Sbjct: 69766 attaattgatgatgattt 69783
Score = 28.2 bits (14), Expect(10) = 3e-47 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 294 accacaacaacaac 307 |||||||||||||| Sbjct: 71616 accacaacaacaac 71629
Score = 28.2 bits (14), Expect(10) = 3e-47 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 1815 agttgtagttattt 1828 |||||||||||||| Sbjct: 130275 agttgtagttattt 130288
Score = 105 bits (53), Expect(7) = 7e-36 Identities = 62/65 (95%) Strand = Plus / Plus
Query: 872 taacaatatgggcgctatgaatttaggaatgaatgctatgtctccaatgggtggtgctcc 931 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81422 taacaatatgggtggcatgaatttaggaatgaatgctatgtctccaatgggtggtgctcc 81481
Query: 932 aatga 936 ||||| Sbjct: 81482 aatga 81486
Score = 65.9 bits (33), Expect(7) = 7e-36 Identities = 36/37 (97%) Strand = Plus / Plus
Query: 716 tggtggtatgatgccaatgaataatggaggtatgatg 752 ||||||||||||||||||||||||||| ||||||||| Sbjct: 81230 tggtggtatgatgccaatgaataatggcggtatgatg 81266
Score = 65.9 bits (33), Expect(7) = 7e-36 Identities = 33/33 (100%) Strand = Plus / Plus
Query: 765 ggtatgatgccaatgaataatggtggtatgatg 797 ||||||||||||||||||||||||||||||||| Sbjct: 81258 ggtatgatgccaatgaataatggtggtatgatg 81290
Score = 30.2 bits (15), Expect(7) = 7e-36 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 1072 cacaaccatctcaat 1086 ||||||||||||||| Sbjct: 81619 cacaaccatctcaat 81633
Score = 28.2 bits (14), Expect(7) = 7e-36 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 297 acaacaacaaccac 310 |||||||||||||| Sbjct: 19611 acaacaacaaccac 19624
Score = 28.2 bits (14), Expect(7) = 7e-36 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 679 atggtggtatgttg 692 |||||||||||||| Sbjct: 64209 atggtggtatgttg 64222
Score = 26.3 bits (13), Expect(7) = 7e-36 Identities = 13/13 (100%) Strand = Plus / Plus
Query: 1870 cagtcatcagtta 1882 ||||||||||||| Sbjct: 119883 cagtcatcagtta 119895
Score = 65.9 bits (33), Expect(2) = 2e-16 Identities = 36/37 (97%) Strand = Plus / Plus
Query: 761 tggtggtatgatgccaatgaataatggtggtatgatg 797 ||||||||||||||||||||||||||| ||||||||| Sbjct: 81230 tggtggtatgatgccaatgaataatggcggtatgatg 81266
Score = 54.0 bits (27), Expect(2) = 2e-16 Identities = 27/27 (100%) Strand = Plus / Plus
Query: 716 tggtggtatgatgccaatgaataatgg 742 ||||||||||||||||||||||||||| Sbjct: 81167 tggtggtatgatgccaatgaataatgg 81193
Score = 69.9 bits (35), Expect(2) = 4e-14 Identities = 38/39 (97%) Strand = Plus / Plus
Query: 716 tggtggtatgatgccaatgaataatggaggtatgatggg 754 ||||||||||||||||||||||||||| ||||||||||| Sbjct: 81377 tggtggtatgatgccaatgaataatggtggtatgatggg 81415
Score = 42.1 bits (21), Expect(2) = 4e-14 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 669 atgatgaacaatggtggtatg 689 ||||||||||||||||||||| Sbjct: 81321 atgatgaacaatggtggtatg 81341
Score = 61.9 bits (31), Expect = 9e-05 Identities = 34/35 (97%) Strand = Plus / Plus
Query: 691 tgaataatggtgttatgatgaacaatggtggtatg 725 |||||||||||| |||||||||||||||||||||| Sbjct: 81271 tgaataatggtggtatgatgaacaatggtggtatg 81305
Score = 58.0 bits (29), Expect = 0.001 Identities = 50/57 (87%) Strand = Plus / Plus
Query: 672 atgaacaatggtggtatgttgaataatggtgttatgatgaacaatggtggtatgatg 728 ||||| |||||||||||| |||| ||||||| |||| |||| ||||||| ||||||| Sbjct: 81270 atgaataatggtggtatgatgaacaatggtggtatgttgaataatggtgttatgatg 81326
Score = 56.0 bits (28), Expect = 0.006 Identities = 28/28 (100%) Strand = Plus / Plus
Query: 761 tggtggtatgatgccaatgaataatggt 788 |||||||||||||||||||||||||||| Sbjct: 81167 tggtggtatgatgccaatgaataatggt 81194
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,465,611,913 Number of extensions: 84066168 Number of successful extensions: 6354215 Number of sequences better than 10.0: 43 Length of query: 2186 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 2162 Effective length of database: 97,308,875,965 Effective search space: 210381789836330 Effective search space used: 210381789836330 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.13 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
2 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |