Contig-U14966-1
Contig ID Contig-U14966-1
Contig update 2004. 6.11
Contig sequence
>Contig-U14966-1 (Contig-U14966-1Q) /CSM_Contig/Contig-U14966-1Q.Seq.d
ACTGTTGGCCTACTGGNATTTTTGTTACAACATTCATATTAAATAAAAGA
AAAAAAAAATGAATAAAATCTTATCAATACTTTTATTAAGTATTTTAATT
TTATTTATCCTAAGAGTGGAATCATATCCAACATATGGTGGATCAAATTC
AGCAAATATTAGAAGAGAGGACAGACATTCATTTAGAGCTCCATTCTTAC
AAAGGGGTACTGGTATTTTATATTGGGATATCGAAGGTTCAACAATTGTA
AATGATGATTTCATTCGTTTAACATCGGACCAAAAATCATTACATGGTGC
AATTTGGAATACTGAACCAATGGAACAACCATGGTGGGAAGTTGTATTTG
AATTTAGAGTACATGGTGCAGGTAGAATTGGTGCTGATGGTATCGCTCTT
TGGTTAGTAGATAGAAAAGAAGGTAATTCTCAAGATTTCTCAATTTATGG
TTCTAAAAATTTATGGAAAGGTTTGGCTATTATTTTTGATACTTTTGATA
ATGATCAAAATGGTGATCATCCATTAATTTCAGTATTTTATAATGATGGT
ACTAAATTTTATGAAACAGCAAAAGATGGTAGTAATATGAAATTAGGTAG
TTGTTCATCAAGATATAGAAATGATAAACATAATGCCAAATCAAGAATTA
GATATTATCATGGTTTATTGAGTGTTGAAATCGATCCAAATGGATCAGGT
ATTTTCGAGAAATGCGTTCAAGATGTTCGTCTTGATATTCCAACACGTTA
TACATTTGGTGTTTCAGCTGCCACTGGTGGTTTAACTGATAATCATGATG
TTTACTCTTTTGATACCTTTAGTTTAGATGCTTCAGTTTCAAATCAAAAT
ACAAATAATTATAATAATGTTCAATTTGAAAGAGAAAGATTAGAAAAACA
AAGATTAGAATATGAATTACAACAAACTCAACAACAACAAACTCAACAAC
AACAACAACAACAACAACAACAACAACAAACTCAACAACAAACCCAACAA
AATAACCAAGATAAAGAATATCAAGAATTTTTACAATATAAAGCTCAACA
ACAACAACAAAATAACTATCAACAAACTCAAAATGATTTAATTGAAAAAT
TAAATGAAATTCAACAAGAACAACAACAAACTCAACCACCACAACAACAA
CAACAACAAACTCAACCTCCACAACAAAAATTACAAGATGAAATTAAAAA
TTTATCAGAAAAAGAACAAATTGGATTTTTAGTTAAAAAGGTTGATTCAT
TAGTTGAAGCAATTCATTCATTACATGTAATTTTAGATGATCCAGATTAT
AAAAAGAGTTTTGATGGTTTAAGAGATCAAGTTAATGTAATTAGTCAAGC
ATTAGTTTCATTATCACAAGGTTCACTTAAAGTTAAAGATTTTGAAAGTT
TCCGTTCAACTTATGATCAAAAGCAATCACAATTCATTAAAGACTTTTAT
GATTTCAAATCAACAATGCAAGATCTTAAAGCAACCATCAACAATAGATT
CAATAATCAAGATAATGACGTCACCAAATCAATTGAATCAGTTAATATGA
ATTTAAATTCTTTAAGAAAATTAGTTGAAGCTTCAACTAGAGATACTCAA
AAAATCTCTTCCATCTTAAATTCAAACGCTGATGAATTGGCAAACACAAT
TCAAAAACATAGTTCATTTGGTTTTTGGACTTACTTTTTATTCGTTCAAG
CTATCTTTATCTTTGGTTTTGTTTTTTGGAGAAAATATAAAGATGATAAT
AATAAAAAATTAATTTAAAAAAAAATAAAATAAAATAAATAAATAAAAAA
AATAAAATAAAAATTTAAAAATAATAATAAAATAATAAAATAATTAATAA
TACCAATAATAATAATAATAATAATAATAATAAAATAAGTATGTCAATTT
ATAAATTGTAACAATTAAGAATTTCCAATAAAAATAATAAGTTTTTAGGA
TAAAATTTTTTAAACAAAAAAAAAAAA

Gap no gap
Contig length 1977
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1064699
End point 1066656
Strand (PLUS/MINUS) PLUS
Number of clones 11
Number of EST 18
Link to clone list U14966
List of clone(s)

est1=AFH665F,1,432
est2=SFH835F,1,465
est3=CFH771F,18,604
est4=VFN560F,18,359
est5=AFD436F,20,938
est6=SFH417F,28,608
est7=VFN523F,213,411
est8=SSK153F,884,1418
est9=VSH461E,1070,1824
est10=VSI357E,1098,1918
est11=AFD436Z,1120,1736
est12=SFH835Z,1124,1707
est13=SFH417Z,1128,1786
est14=AFH665Z,1129,1712
est15=CFH771Z,1143,1707
est16=VFN560Z,1203,1697
est17=SSK822E,1274,1830
est18=SSK153Z,1494,1976
Translated Amino Acid sequence
llaywxfcynihik*KKKKMNKILSILLLSILILFILRVESYPTYGGSNSANIRREDRHS
FRAPFLQRGTGILYWDIEGSTIVNDDFIRLTSDQKSLHGAIWNTEPMEQPWWEVVFEFRV
HGAGRIGADGIALWLVDRKEGNSQDFSIYGSKNLWKGLAIIFDTFDNDQNGDHPLISVFY
NDGTKFYETAKDGSNMKLGSCSSRYRNDKHNAKSRIRYYHGLLSVEIDPNGSGIFEKCVQ
DVRLDIPTRYTFGVSAATGGLTDNHDVYSFDTFSLDASVSNQNTNNYNNVQFERERLEKQ
RLEYELQQTQQQQTQQQQQQQQQQQQTQQQTQQNNQDKEYQEFLQYKAQQQQQNNYQQTQ
NDLIEKLNEIQQEQQQTQPPQQQQQQTQPPQQKLQDEIKNLSEKEQIGFLVKKVDSLVEA
IHSLHVILDDPDYKKSFDGLRDQVNVISQALVSLSQGSLKVKDFESFRSTYDQKQSQFIK
DFYDFKSTMQDLKATINNRFNNQDNDVTKSIESVNMNLNSLRKLVEASTRDTQKISSILN
SNADELANTIQKHSSFGFWTYFLFVQAIFIFGFVFWRKYKDDNNKKLI*kkik*nk*ikk
ik*kfknnnkiik*liipiiiiiiiiik*vcqfincnn*efpikiisf*dkif*tkkk


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxfllqhsy*ikekkne*nlintfikyfnfiypksgiisniwwikfsky*krgqtf
i*ssiltkgywyfilgyrrfnnck**fhsfnigpkiitwcnley*tngttmvgsci*i*s
twcr*nwc*wyrslvsr*krr*fsrflnlwf*kfmerfgyyf*yf***skw*ssinfsil
**wy*il*nskrw**yeir*lfiki*k**t*cqikn*ilswfiec*nrskwiryfremrs
rcss*ysntlyiwcfschwwfn**s*cllf*yl*frcfsfkskyk*l**csi*krkirkt
kiri*ittnstttnstttttttttttnsttnptk*pr*risrifti*ssttttk*lstns
k*fn*kik*nstrtttnsttttttttnststtkitr*n*kfirkrtnwifs*kg*fis*s
nsfitcnfr*srl*kef*wfkrss*cn*ssisfiitrft*s*rf*kfpfnl*skaitih*
rll*fqinnars*snhqq*iq*sr**rhqin*is*yefkffkkis*sfn*rysknlfhlk
fkr**igkhnskt*fiwfldllfirssylylwfcfleki*r****kinlkknkik*inkk
nkiki*k***nnkiinntnnnnnnnnnkismsiykl*qlrisnknnkflg*nflnkkkk


Frame B:
llaywxfcynihik*KKKKMNKILSILLLSILILFILRVESYPTYGGSNSANIRREDRHS
FRAPFLQRGTGILYWDIEGSTIVNDDFIRLTSDQKSLHGAIWNTEPMEQPWWEVVFEFRV
HGAGRIGADGIALWLVDRKEGNSQDFSIYGSKNLWKGLAIIFDTFDNDQNGDHPLISVFY
NDGTKFYETAKDGSNMKLGSCSSRYRNDKHNAKSRIRYYHGLLSVEIDPNGSGIFEKCVQ
DVRLDIPTRYTFGVSAATGGLTDNHDVYSFDTFSLDASVSNQNTNNYNNVQFERERLEKQ
RLEYELQQTQQQQTQQQQQQQQQQQQTQQQTQQNNQDKEYQEFLQYKAQQQQQNNYQQTQ
NDLIEKLNEIQQEQQQTQPPQQQQQQTQPPQQKLQDEIKNLSEKEQIGFLVKKVDSLVEA
IHSLHVILDDPDYKKSFDGLRDQVNVISQALVSLSQGSLKVKDFESFRSTYDQKQSQFIK
DFYDFKSTMQDLKATINNRFNNQDNDVTKSIESVNMNLNSLRKLVEASTRDTQKISSILN
SNADELANTIQKHSSFGFWTYFLFVQAIFIFGFVFWRKYKDDNNKKLI*kkik*nk*ikk
ik*kfknnnkiik*liipiiiiiiiiik*vcqfincnn*efpikiisf*dkif*tkkk


Frame C:
cwptgifvttfilnkrkkk*iksyqyfy*vf*fyls*ewnhiqhmvdqiqqileertdih
lelhsykgvlvfyigiskvqql*mmisfv*hrtknhymvqfgilnqwnnhggklylnley
mvqvelvlmvslfg**iekkvilkisqfmvlkiygkvwllflillimikmviih*fqyfi
mmvlnfmkqqkmvvi*n*vvvhqdieminimpnqeldiimvy*vlksiqmdqvfsrnafk
mfvlifqhvihlvfqlplvv*liimmftlliplv*mlqfqikiqiiiimfnlkekd*knk
d*nmnynklnnnklnnnnnnnnnnnklnnkpnkitkikniknfyniklnnnnkitinklk
mi*lkn*mkfnknnnklnhhnnnnnklnlhnknykmklkiyqkknkldf*lkrlih*lkq
fihym*f*miqiikrvlmv*eiklm*lvkh*fhyhkvhlklkilkvsvqlmiksnhnslk
tfmisnqqckilkqpstidsiikimtspnqlnqli*i*il*en*lklqleilkkslps*i
qtlmnwqtqfknivhlvfgltfysfklslslvlffgenikmiiikn*fkkk*nkink*kk
*nknlkiiik**nn**yq*********nkyvnl*ivtiknfq*k**vfrikffkqkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U14966-1 (Contig-U14966-1Q)
/CSM_Contig/Contig-U14966-1Q.Seq.d
(1977 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14966-1 (Contig-U14966-1Q) /CSM_Contig/Conti... 1754 0.0
Contig-U09610-1 (Contig-U09610-1Q) /CSM_Contig/Conti... 58 5e-08
Contig-U11448-1 (Contig-U11448-1Q) /CSM_Contig/Conti... 56 2e-07
Contig-U13857-1 (Contig-U13857-1Q) /CSM_Contig/Conti... 50 1e-05
Contig-U16365-1 (Contig-U16365-1Q) /CSM_Contig/Conti... 48 5e-05
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U14975-1 (Contig-U14975-1Q) /CSM_Contig/Conti... 44 8e-04
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti... 44 8e-04
Contig-U09273-1 (Contig-U09273-1Q) /CSM_Contig/Conti... 44 8e-04
Contig-U15252-1 (Contig-U15252-1Q) /CSM_Contig/Conti... 42 0.003

>Contig-U14966-1 (Contig-U14966-1Q) /CSM_Contig/Contig-U14966-1Q.Seq.d
Length = 1977

Score = 1754 bits (885), Expect = 0.0
Identities = 908/918 (98%)
Strand = Plus / Plus


Query: 1 actgttggcctactggnatttttgttacaacattcatattaaataaaagnnnnnnnnnnt 60
||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 actgttggcctactggnatttttgttacaacattcatattaaataaaagaaaaaaaaaat 60


Query: 61 gaataaaatcttatcaatacttttattaagtattttaattttatttatcctaagagtgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaataaaatcttatcaatacttttattaagtattttaattttatttatcctaagagtgga 120


Query: 121 atcatatccaacatatggtggatcaaattcagcaaatattagaagagaggacagacattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcatatccaacatatggtggatcaaattcagcaaatattagaagagaggacagacattc 180


Query: 181 atttagagctccattcttacaaaggggtactggtattttatattgggatatcgaaggttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttagagctccattcttacaaaggggtactggtattttatattgggatatcgaaggttc 240


Query: 241 aacaattgtaaatgatgatttcattcgtttaacatcggaccaaaaatcattacatggtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacaattgtaaatgatgatttcattcgtttaacatcggaccaaaaatcattacatggtgc 300


Query: 301 aatttggaatactgaaccaatggaacaaccatggtgggaagttgtatttgaatttagagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatttggaatactgaaccaatggaacaaccatggtgggaagttgtatttgaatttagagt 360


Query: 361 acatggtgcaggtagaattggtgctgatggtatcgctctttggttagtagatagaaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acatggtgcaggtagaattggtgctgatggtatcgctctttggttagtagatagaaaaga 420


Query: 421 aggtaattctcaagatttctcaatttatggttctaaaaatttatggaaaggtttggctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggtaattctcaagatttctcaatttatggttctaaaaatttatggaaaggtttggctat 480


Query: 481 tatttttgatacttttgataatgatcaaaatggtgatcatccattaatttcagtatttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatttttgatacttttgataatgatcaaaatggtgatcatccattaatttcagtatttta 540


Query: 541 taatgatggtactaaattttatgaaacagcaaaagatggtagtaatatgaaattaggtag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taatgatggtactaaattttatgaaacagcaaaagatggtagtaatatgaaattaggtag 600


Query: 601 ttgttcatcaagatatagaaatgataaacataatgccaaatcaagaattagatattatca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgttcatcaagatatagaaatgataaacataatgccaaatcaagaattagatattatca 660


Query: 661 tggtttattgagtgttgaaatcgatccaaatggatcaggtattttcgagaaatgcgttca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tggtttattgagtgttgaaatcgatccaaatggatcaggtattttcgagaaatgcgttca 720


Query: 721 agatgttcgtcttgatattccaacacgttatacatttggtgtttcagctgccactggtgg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agatgttcgtcttgatattccaacacgttatacatttggtgtttcagctgccactggtgg 780


Query: 781 tttaactgataatcatgatgtttactcttttgatacctttagtttagatgcttcagtttc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tttaactgataatcatgatgtttactcttttgatacctttagtttagatgcttcagtttc 840


Query: 841 aaatcaaaatacaaataattataataatgttcaatttgaaagagaaagattagaaaaaca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aaatcaaaatacaaataattataataatgttcaatttgaaagagaaagattagaaaaaca 900


Query: 901 aagattagaatatgaatt 918
||||||||||||||||||
Sbjct: 901 aagattagaatatgaatt 918


Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus


Query: 1178 aaattacaagatgaaattaaaaatttatcagaaaaagaacaaattggatttttagttaaa 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 aaattacaagatgaaattaaaaatttatcagaaaaagaacaaattggatttttagttaaa 1237


Query: 1238 aaggttgattcattagttgaagcaattcattcattacatgtaattttagatgatccagat 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 aaggttgattcattagttgaagcaattcattcattacatgtaattttagatgatccagat 1297


Query: 1298 tataaaaagagttttgatggtttaagagatcaagttaatgtaattagtcaagcattagtt 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 tataaaaagagttttgatggtttaagagatcaagttaatgtaattagtcaagcattagtt 1357


Query: 1358 tcattatcacaaggttcacttaaagttaaagattttgaaagtttccgttcaacttatgat 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 tcattatcacaaggttcacttaaagttaaagattttgaaagtttccgttcaacttatgat 1417


Query: 1418 caaaagcaatcacaattcattaaagacttttatgatttcaaatcaacaatgcaagatctt 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 caaaagcaatcacaattcattaaagacttttatgatttcaaatcaacaatgcaagatctt 1477


Query: 1478 aaagcaaccatcaacaatagattcaataatcaagataatgacgtcaccaaatcaattgaa 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1478 aaagcaaccatcaacaatagattcaataatcaagataatgacgtcaccaaatcaattgaa 1537


Query: 1538 tcagttaatatgaatttaaattctttaagaaaattagttgaagcttcaactagagatact 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1538 tcagttaatatgaatttaaattctttaagaaaattagttgaagcttcaactagagatact 1597


Query: 1598 caaaaaatctcttccatcttaaattcaaacgctgatgaattggcaaacacaattcaaaaa 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1598 caaaaaatctcttccatcttaaattcaaacgctgatgaattggcaaacacaattcaaaaa 1657


Query: 1658 catagttcatttggtttttggacttactttttattcgttcaagctatctttatctttggt 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1658 catagttcatttggtttttggacttactttttattcgttcaagctatctttatctttggt 1717


Query: 1718 tttgttttttggag 1731
||||||||||||||
Sbjct: 1718 tttgttttttggag 1731


Score = 234 bits (118), Expect = 4e-61
Identities = 118/118 (100%)
Strand = Plus / Plus


Query: 1001 aataaccaagataaagaatatcaagaatttttacaatataaagctcaacaacaacaacaa 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 aataaccaagataaagaatatcaagaatttttacaatataaagctcaacaacaacaacaa 1060


Query: 1061 aataactatcaacaaactcaaaatgatttaattgaaaaattaaatgaaattcaacaag 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 aataactatcaacaaactcaaaatgatttaattgaaaaattaaatgaaattcaacaag 1118


Score = 153 bits (77), Expect = 1e-36
Identities = 77/77 (100%)
Strand = Plus / Plus


Query: 1889 gtatgtcaatttataaattgtaacaattaagaatttccaataaaaataataagtttttag 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 gtatgtcaatttataaattgtaacaattaagaatttccaataaaaataataagtttttag 1948


Query: 1949 gataaaattttttaaac 1965
|||||||||||||||||
Sbjct: 1949 gataaaattttttaaac 1965


Score = 36.2 bits (18), Expect = 0.20
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 1572 tagttgaagcttcaacta 1589
||||||||||||||||||
Sbjct: 1589 tagttgaagcttcaacta 1572


Score = 34.2 bits (17), Expect = 0.79
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1044 ctcaacaacaacaacaa 1060
|||||||||||||||||
Sbjct: 942 ctcaacaacaacaacaa 958


Score = 32.2 bits (16), Expect = 3.1
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1046 caacaacaacaacaaa 1061
||||||||||||||||
Sbjct: 1145 caacaacaacaacaaa 1160


Score = 32.2 bits (16), Expect = 3.1
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1046 caacaacaacaacaaa 1061
||||||||||||||||
Sbjct: 965 caacaacaacaacaaa 980


>Contig-U09610-1 (Contig-U09610-1Q) /CSM_Contig/Contig-U09610-1Q.Seq.d
Length = 1160

Score = 58.0 bits (29), Expect = 5e-08
Identities = 35/37 (94%)
Strand = Plus / Plus


Query: 874 atttgaaagagaaagattagaaaaacaaagattagaa 910
|||||||| |||||||||||||||| |||||||||||
Sbjct: 1026 atttgaaaaagaaagattagaaaaagaaagattagaa 1062


Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus


Query: 878 gaaagagaaagattagaaaaacaaagattagaa 910
|||| |||||||||||||||| |||||||||||
Sbjct: 1045 gaaaaagaaagattagaaaaagaaagattagaa 1077


Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus


Query: 878 gaaagagaaagattagaaaaacaaagattagaa 910
|||| |||||||||||||||| |||||||||||
Sbjct: 1060 gaaaaagaaagattagaaaaagaaagattagaa 1092


Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Plus


Query: 878 gaaagagaaagattagaaaaacaaagattaga 909
|||| |||||||||||||||| ||||||||||
Sbjct: 761 gaaaaagaaagattagaaaaagaaagattaga 792


Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 883 agaaagattagaaaaacaaagattagaa 910
|||||||||||||||| |||||||||||
Sbjct: 751 agaaagattagaaaaagaaagattagaa 778


Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus


Query: 876 ttgaaagagaaagattagaaaaacaaagattagaa 910
|||||| ||||||||| |||||| |||||||||||
Sbjct: 1013 ttgaaaaagaaagatttgaaaaagaaagattagaa 1047


Score = 40.1 bits (20), Expect = 0.013
Identities = 26/28 (92%)
Strand = Plus / Plus


Query: 883 agaaagattagaaaaacaaagattagaa 910
|||||||||||| ||| |||||||||||
Sbjct: 736 agaaagattagagaaagaaagattagaa 763


Score = 38.2 bits (19), Expect = 0.051
Identities = 25/27 (92%)
Strand = Plus / Plus


Query: 883 agaaagattagaaaaacaaagattaga 909
|||||||||||||||| ||| ||||||
Sbjct: 844 agaaagattagaaaaagaaaaattaga 870


Score = 36.2 bits (18), Expect = 0.20
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 878 gaaagagaaagattagaaaaacaaag 903
|||| |||||||||||||||| ||||
Sbjct: 1075 gaaaaagaaagattagaaaaagaaag 1100


>Contig-U11448-1 (Contig-U11448-1Q) /CSM_Contig/Contig-U11448-1Q.Seq.d
Length = 1622

Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus


Query: 871 tcaatttgaaagagaaagattagaaaaacaaagattagaa 910
|||||| ||||||||||||||||||||| | |||||||||
Sbjct: 532 tcaattagaaagagaaagattagaaaaagagagattagaa 571


Score = 40.1 bits (20), Expect = 0.013
Identities = 26/28 (92%)
Strand = Plus / Plus


Query: 871 tcaatttgaaagagaaagattagaaaaa 898
|||||| |||| ||||||||||||||||
Sbjct: 643 tcaattggaaaaagaaagattagaaaaa 670


Score = 38.2 bits (19), Expect = 0.051
Identities = 25/27 (92%)
Strand = Plus / Plus


Query: 871 tcaatttgaaagagaaagattagaaaa 897
|||||| |||| |||||||||||||||
Sbjct: 754 tcaattagaaaaagaaagattagaaaa 780


Score = 36.2 bits (18), Expect = 0.20
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 889 attagaaaaacaaagattagaa 910
|||||||||| |||||||||||
Sbjct: 757 attagaaaaagaaagattagaa 778


Score = 34.2 bits (17), Expect = 0.79
Identities = 29/33 (87%)
Strand = Plus / Plus


Query: 878 gaaagagaaagattagaaaaacaaagattagaa 910
|||| ||| |||||||||||| | |||||||||
Sbjct: 554 gaaaaagagagattagaaaaagagagattagaa 586


Score = 32.2 bits (16), Expect = 3.1
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 871 tcaatttgaaagagaaagattaga 894
|||||| |||| ||||||||||||
Sbjct: 436 tcaattagaaaaagaaagattaga 459


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,743
Number of Sequences: 8402
Number of extensions: 61743
Number of successful extensions: 14769
Number of sequences better than 10.0: 1301
length of query: 1977
length of database: 8,075,542
effective HSP length: 17
effective length of query: 1960
effective length of database: 7,932,708
effective search space: 15548107680
effective search space used: 15548107680
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 1. 6
Homology vs DNA
Query= Contig-U14966-1 (Contig-U14966-1Q) /CSM_Contig/Contig-U14966-1Q.Seq.d
(1977 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ391084) Dictyostelium discoideum cDNA clone:dds15b06, 5' ... 1076 0.0 2
(BJ361313) Dictyostelium discoideum cDNA clone:ddc16n17, 5' ... 1066 0.0 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 890 0.0 5
(BJ388807) Dictyostelium discoideum cDNA clone:dds16f10, 5' ... 799 0.0 2
(BJ324656) Dictyostelium discoideum cDNA clone:dda7h10, 5' e... 823 0.0 2
(AU268568) Dictyostelium discoideum vegetative cDNA clone:VS... 846 0.0 1
(AU267485) Dictyostelium discoideum vegetative cDNA clone:VS... 846 0.0 1
(BJ400828) Dictyostelium discoideum cDNA clone:dds15b06, 3' ... 846 0.0 1
(BJ374892) Dictyostelium discoideum cDNA clone:ddc16n17, 3' ... 846 0.0 1
(BJ343572) Dictyostelium discoideum cDNA clone:dda16a18, 3' ... 846 0.0 1
(BJ341595) Dictyostelium discoideum cDNA clone:dda7h10, 3' e... 846 0.0 1
(BJ402321) Dictyostelium discoideum cDNA clone:dds16f10, 3' ... 839 0.0 1
(BJ435830) Dictyostelium discoideum cDNA clone:ddv28g15, 3' ... 817 0.0 1
(C94453) Dictyostelium discoideum slug cDNA, clone SSK822. 779 0.0 1
(BJ326438) Dictyostelium discoideum cDNA clone:dda16a18, 5' ... 682 0.0 3
(AU267484) Dictyostelium discoideum vegetative cDNA clone:VS... 583 e-161 1
(AU268569) Dictyostelium discoideum vegetative cDNA clone:VS... 559 e-154 1
(BJ417723) Dictyostelium discoideum cDNA clone:ddv28g15, 5' ... 476 e-142 2
(BJ417609) Dictyostelium discoideum cDNA clone:ddv28m05, 5' ... 331 6e-86 1
(AU074254) Dictyostelium discoideum slug cDNA, clone SSK153. 64 6e-12 2
(FC732056) CBBG7026.fwd CBBG Lottia gigantea 12,15,18h embry... 40 5e-08 4
(FC774670) CBBN8494.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv... 40 6e-08 4
(FC752702) CBBI6546.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 40 2e-04 3
(EL574203) Physarum10335 Physarum polycephalum starvation st... 42 0.001 3
(EL568715) Physarum10337 Physarum polycephalum starvation st... 42 0.001 3
(BJ431245) Dictyostelium discoideum cDNA clone:ddv13m07, 3' ... 58 0.001 1
(FC573525) CAXP10543.fwd CAXP Lottia gigantea from head, foo... 38 0.005 3
(BJ392554) Dictyostelium discoideum cDNA clone:dds28h04, 5' ... 56 0.005 1
(BJ336179) Dictyostelium discoideum cDNA clone:dda53c06, 5' ... 56 0.005 1
(FC772672) CBBN7212.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv... 38 0.009 3
(BJ328855) Dictyostelium discoideum cDNA clone:dda29e22, 5' ... 50 0.013 2
(AM510753) Paracentrotus lividus EST, clone MPMGp1171F2040Q,... 54 0.021 1
(ES411717) HTAB-aaa38d08.b2 Heterorhabditis_bacteriophora_HT... 38 0.037 3
(BX538350) Cryptosporidium parvum chromosome 6, complete seq... 52 0.082 1
(BJ422132) Dictyostelium discoideum cDNA clone:ddv44p21, 5' ... 36 0.099 3
(BJ418847) Dictyostelium discoideum cDNA clone:ddv34p04, 5' ... 36 0.10 3
(AJ245435) Plasmodium falciparum gc-alpha gene for guanylyl ... 32 0.12 7
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.14 13
(BJ446622) Dictyostelium discoideum cDNA clone:ddv63f08, 3' ... 34 0.24 2
(BJ358114) Dictyostelium discoideum cDNA clone:dda65e21, 3' ... 34 0.24 2
(CF803372) rg70f04.y1 Meloidogyne hapla female SL1 pGEM Melo... 40 0.25 2
(CF803375) rg70f07.y1 Meloidogyne hapla female SL1 pGEM Melo... 40 0.25 2
(AE015927) Clostridium tetani E88, complete genome. 38 0.31 20
(BX088531) Mouse DNA sequence from clone RP23-106J7 on chrom... 50 0.33 1
(EK139363) 1095454063233 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.33 1
(AM054205) Eudiplodinium maggii EST, clone Em06_G05. 50 0.33 1
(BE581727) kq51d04.y1 TBN95TM-SSR Strongyloides stercoralis ... 50 0.33 1
(BJ336914) Dictyostelium discoideum cDNA clone:dda55i18, 5' ... 36 0.38 3
(EF537453) Borrelia burgdorferi strain Bol6 decorin-binding ... 42 0.41 2
(DQ437434) Borrelia burgdorferi strain CS7 DbpA (dbpA) gene,... 42 0.41 2
(DQ437423) Borrelia burgdorferi strain 86b DbpA (dbpA) gene,... 42 0.42 2
(DQ437424) Borrelia burgdorferi strain 88a DbpA (dbpA) gene,... 42 0.42 2
(EF537454) Borrelia burgdorferi strain PO7 decorin-binding p... 42 0.42 2
(DQ437418) Borrelia burgdorferi strain 167bjm DbpA (dbpA) ge... 42 0.42 2
(EF537456) Borrelia burgdorferi strain Y1 decorin-binding pr... 42 0.42 2
(EF537455) Borrelia burgdorferi strain Z9 decorin-binding pr... 42 0.42 2
(DQ437426) Borrelia burgdorferi strain 97b DbpA (dbpA) gene,... 42 0.42 2
(DQ437420) Borrelia burgdorferi strain 64b DbpA (dbpA) gene,... 42 0.42 2
(DQ437416) Borrelia burgdorferi strain 160b DbpA (dbpA) gene... 42 0.42 2
(DQ437408) Borrelia burgdorferi strain 109a DbpA (dbpA) gene... 42 0.42 2
(AJ748644) Borrelia burgdorferi dbpA gene for decorin bindin... 42 0.42 2
(U63932) Borrelia burgdorferi P22-H3 (p22) gene, partial cds. 42 0.43 2
(EF537462) Borrelia burgdorferi strain NP14 decorin-binding ... 42 0.43 2
(EF537461) Borrelia burgdorferi strain SD91 decorin-binding ... 42 0.43 2
(EF537458) Borrelia burgdorferi Bol26 decorin-binding protei... 42 0.43 2
(EF537457) Borrelia burgdorferi strain Y10 decorin-binding p... 42 0.43 2
(EF537452) Borrelia burgdorferi strain Lx36 decorin-binding ... 42 0.43 2
(EF537451) Borrelia burgdorferi strain 217_5 decorin-binding... 42 0.43 2
(EF537450) Borrelia burgdorferi strain Bol12 decorin-binding... 42 0.43 2
(EF537449) Borrelia burgdorferi strain Bol29 decorin-binding... 42 0.43 2
(EF537448) Borrelia burgdorferi strain Bol30 decorin-binding... 42 0.43 2
(DQ437428) Borrelia burgdorferi strain N40 DbpA (dbpA) gene,... 42 0.43 2
(AR177222) Sequence 45 from patent US 6312907. 42 0.43 2
(AR177216) Sequence 33 from patent US 6312907. 42 0.43 2
(EF537447) Borrelia burgdorferi strain Bol25 decorin-binding... 42 0.43 2
(EF537446) Borrelia burgdorferi strain Bol15 decorin-binding... 42 0.43 2
(AJ748645) Borrelia burgdorferi dbpA gene for decorin bindin... 42 0.43 2
(AJ748641) Borrelia burgdorferi dbpA gene for decorin bindin... 42 0.43 2
(AJ748638) Borrelia burgdorferi dbpA gene for decorin bindin... 42 0.43 2
(AJ748562) Borrelia burgdorferi dbpA gene for decorin bindin... 42 0.43 2
(AJ748639) Borrelia burgdorferi dbpA gene for decorin bindin... 42 0.43 2
(AF069273) Borrelia burgdorferi strain 25015 decorin binding... 42 0.43 2
(EJ995721) 1093023086804 Global-Ocean-Sampling_GS-30-02-01-1... 46 0.46 2
(EJ976534) 1093022122517 Global-Ocean-Sampling_GS-30-02-01-1... 46 0.52 2
(AM557397) Paracentrotus lividus EST, clone MPMGp1172C2063Q,... 46 0.57 2
(EJ068643) 1095458062757 Global-Ocean-Sampling_GS-26-01-01-1... 36 0.59 3
(AC176783) Strongylocentrotus purpuratus clone R3-3106E9, WO... 42 0.65 4
(AF069252) Borrelia burgdorferi strain N40 decorin binding p... 42 0.87 2
(AF069251) Borrelia burgdorferi strain ZS7 decorin binding p... 42 0.87 2
(CR936518) Zebrafish DNA sequence from clone DKEY-27E18 in l... 36 0.92 7
(AF042796) Borrelia burgdorferi putative decorin-binding pro... 42 1.2 2
(BJ336872) Dictyostelium discoideum cDNA clone:dda55o12, 5' ... 34 1.2 3
(EU025707) Salmo salar homeobox protein HoxB13ab (HoxB13ab),... 48 1.3 1
(BX323802) Zebrafish DNA sequence from clone DKEY-104I9 in l... 48 1.3 1
(CR974488) Mouse DNA sequence from clone RP23-124J3 on chrom... 48 1.3 1
(CR974480) Mouse DNA sequence from clone RP23-239B4 on chrom... 48 1.3 1
(CR974459) Mouse DNA sequence from clone RP23-179P23 on chro... 48 1.3 1
(CR974424) Mouse DNA sequence from clone RP23-288D11 on chro... 48 1.3 1
(CR956627) Mouse DNA sequence from clone RP24-402N1 on chrom... 48 1.3 1
(CR628367) Mouse DNA sequence from clone RP23-75B12 on chrom... 48 1.3 1

>(BJ391084) Dictyostelium discoideum cDNA clone:dds15b06, 5' end,
single read.
Length = 581

Score = 1076 bits (543), Expect(2) = 0.0
Identities = 547/549 (99%)
Strand = Plus / Plus


Query: 60 tgaataaaatcttatcaatacttttattaagtattttaattttatttatcctaagagtgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 tgaataaaatcttatcaatacttttattaagtattttaattttatttatcctaagagtgg 92


Query: 120 aatcatatccaacatatggtggatcaaattcagcaaatattagaagagaggacagacatt 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 aatcatatccaacatatggnggatcaaattcagcaaatattagaagagaggacagacatt 152


Query: 180 catttagagctccattcttacaaaggggtactggtattttatattgggatatcgaaggtt 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 153 catttagagctccattcttacaaagnggtactggtattttatattgggatatcgaaggtt 212


Query: 240 caacaattgtaaatgatgatttcattcgtttaacatcggaccaaaaatcattacatggtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 caacaattgtaaatgatgatttcattcgtttaacatcggaccaaaaatcattacatggtg 272


Query: 300 caatttggaatactgaaccaatggaacaaccatggtgggaagttgtatttgaatttagag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 caatttggaatactgaaccaatggaacaaccatggtgggaagttgtatttgaatttagag 332


Query: 360 tacatggtgcaggtagaattggtgctgatggtatcgctctttggttagtagatagaaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tacatggtgcaggtagaattggtgctgatggtatcgctctttggttagtagatagaaaag 392


Query: 420 aaggtaattctcaagatttctcaatttatggttctaaaaatttatggaaaggtttggcta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaggtaattctcaagatttctcaatttatggttctaaaaatttatggaaaggtttggcta 452


Query: 480 ttatttttgatacttttgataatgatcaaaatggtgatcatccattaatttcagtatttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttatttttgatacttttgataatgatcaaaatggtgatcatccattaatttcagtatttt 512


Query: 540 ataatgatggtactaaattttatgaaacagcaaaagatggtagtaatatgaaattaggta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ataatgatggtactaaattttatgaaacagcaaaagatggtagtaatatgaaattaggta 572


Query: 600 gttgttcat 608
|||||||||
Sbjct: 573 gttgttcat 581

Score = 44.1 bits (22), Expect(2) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 28 caacattcatattaaataaaag 49
||||||||||||||||||||||
Sbjct: 1 caacattcatattaaataaaag 22

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,754,513,436
Number of extensions: 107222270
Number of successful extensions: 9077995
Number of sequences better than 10.0: 213
Length of query: 1977
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1953
Effective length of database: 97,308,875,965
Effective search space: 190044234759645
Effective search space used: 190044234759645
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.13
Homology vs Protein
Query= Contig-U14966-1 (Contig-U14966-1Q) /CSM_Contig/Contig-U14966-1Q.Seq.d
(1977 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115599_8(AC115599|pid:none) Dictyostelium discoideum chromosom... 897 0.0
AY296117_1(AY296117|pid:none) Ixodes scapularis mannose-binding ... 191 1e-46
AE014296_1559(AE014296|pid:none) Drosophila melanogaster chromos... 181 7e-44
BT074808_1(BT074808|pid:none) Osmerus mordax clone omor-eva-516-... 167 1e-39
AE014297_3625(AE014297|pid:none) Drosophila melanogaster chromos... 164 1e-38
AB053114_1(AB053114|pid:none) Polyandrocarpa misakiensis mRNA fo... 164 1e-38
DQ214561_1(DQ214561|pid:none) Taeniopygia guttata clone 0061P001... 162 3e-38
S42626(S42626;A55876) ER-golgi intermediate compartment protein ... 161 9e-38
AJ851704_1(AJ851704|pid:none) Gallus gallus mRNA for hypothetica... 160 2e-37
(Q9UQG6) RecName: Full=Protein ERGIC-53; AltName: Full=ER-Golgi ... 159 3e-37
(Q9TU32) RecName: Full=Protein ERGIC-53; AltName: Full=ER-Golgi ... 159 3e-37
BC032330_1(BC032330|pid:none) Homo sapiens lectin, mannose-bindi... 159 3e-37
BC017858_1(BC017858|pid:none) Homo sapiens lectin, mannose-bindi... 159 3e-37
AY815149_1(AY815149|pid:none) Schistosoma japonicum SJCHGC01379 ... 159 4e-37
(P49256) RecName: Full=Vesicular integral-membrane protein VIP36... 159 4e-37
AK223208_1(AK223208|pid:none) Homo sapiens mRNA for lectin, mann... 159 4e-37
(Q9DBH5) RecName: Full=Vesicular integral-membrane protein VIP36... 158 8e-37
AK083442_1(AK083442|pid:none) Mus musculus 9 days embryo whole b... 158 8e-37
(Q12907) RecName: Full=Vesicular integral-membrane protein VIP36... 158 8e-37
AK014384_1(AK014384|pid:none) Mus musculus 17 days embryo head c... 157 1e-36
BC130202_1(BC130202|pid:none) Xenopus laevis lectin, mannose-bin... 157 1e-36
BC158808_1(BC158808|pid:none) Rattus norvegicus lectin, mannose-... 157 2e-36
DQ384615_1(DQ384615|pid:none) Caenorhabditis elegans ERGIC-53-li... 154 1e-35
FN357876_1(FN357876|pid:none) Schistosoma mansoni genome sequenc... 152 3e-35
AK301607_1(AK301607|pid:none) Homo sapiens cDNA FLJ52285 complet... 152 6e-35
H89450(H89450)protein T04G9.3 [imported] - Caenorhabditis elegans 151 7e-35
U41274_2(U41274|pid:none) Caenorhabditis elegans cosmid T04G9, c... 151 7e-35
BC087752_1(BC087752|pid:none) Xenopus tropicalis lectin, mannose... 149 3e-34
BX927282_4(BX927282|pid:none) Zebrafish DNA sequence from clone ... 142 3e-32
BC124334_1(BC124334|pid:none) Danio rerio lectin, mannose-bindin... 141 1e-31
BC165327_1(BC165327|pid:none) Danio rerio lectin, mannose-bindin... 141 1e-31
CT005252_67(CT005252|pid:none) Leishmania major strain Friedlin,... 139 3e-31
DQ438980_1(DQ438980|pid:none) Trypanosoma cruzi antigenic lectin... 138 6e-31
AY013869_1(AY013869|pid:none) Trypanosoma cruzi antigen 38 (AG38... 138 6e-31
AM502231_60(AM502231|pid:none) Leishmania infantum chromosome 13. 137 1e-30
BC121228_1(BC121228|pid:none) Xenopus tropicalis lectin, mannose... 137 2e-30
BC099020_1(BC099020|pid:none) Xenopus laevis hypothetical protei... 136 3e-30
(Q5RCF0) RecName: Full=VIP36-like protein; AltName: Full=Lectin ... 132 6e-29
AK075347_1(AK075347|pid:none) Homo sapiens cDNA PSEC0028 fis, cl... 132 6e-29
AK312249_1(AK312249|pid:none) Homo sapiens cDNA, FLJ92544, highl... 131 8e-29
AF506214_1(AF506214|pid:none) Danio rerio vesicular integral-mem... 131 1e-28
(P59481) RecName: Full=VIP36-like protein; AltName: Full=Lectin ... 130 1e-28
(Q2HJD1) RecName: Full=VIP36-like protein; AltName: Full=Lectin ... 130 1e-28
AM494950_49(AM494950|pid:none) Leishmania braziliensis chromosom... 128 9e-28
AY340266_1(AY340266|pid:none) Rhodnius prolixus mannose-binding ... 127 1e-27
AB174664_1(AB174664|pid:none) Macaca fascicularis brain cDNA clo... 127 1e-27
BT021149_1(BT021149|pid:none) Bos taurus lectin, mannose-binding... 126 3e-27
AB211986_1(AB211986|pid:none) Mus musculus slamp mRNA for sublin... 125 7e-27
(Q8VCD3) RecName: Full=Protein ERGIC-53-like; AltName: Full=ERGI... 125 7e-27
U44130_1(U44130|pid:none) Xenopus laevis p58 mRNA, partial cds. 124 2e-26
AK291819_1(AK291819|pid:none) Homo sapiens cDNA FLJ76897 complet... 124 2e-26
AK301244_1(AK301244|pid:none) Homo sapiens cDNA FLJ57897 complet... 123 2e-26
AM270007_2(AM270007|pid:none) Aspergillus niger contig An02c0120... 119 3e-25
AE017349_435(AE017349|pid:none) Cryptococcus neoformans var. neo... 116 3e-24
AP007159_379(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 114 1e-23
CP000499_414(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 110 2e-22
AY358724_1(AY358724|pid:none) Homo sapiens clone DNA96883 ERGL (... 107 2e-21
CR382135_430(CR382135|pid:none) Debaryomyces hansenii strain CBS... 103 2e-20
FM992689_708(FM992689|pid:none) Candida dubliniensis CD36 chromo... 96 5e-18
BX927282_5(BX927282|pid:none) Zebrafish DNA sequence from clone ... 92 9e-17
AK304515_1(AK304515|pid:none) Homo sapiens cDNA FLJ59610 complet... 80 2e-13
BC027226_1(BC027226|pid:none) Mus musculus lectin, mannose-bindi... 71 2e-10
AM270090_2(AM270090|pid:none) Aspergillus niger contig An04c0290... 70 2e-10
AK299740_1(AK299740|pid:none) Homo sapiens cDNA FLJ54937 complet... 69 5e-10
AK301077_1(AK301077|pid:none) Homo sapiens cDNA FLJ54927 complet... 69 5e-10
AM920436_1919(AM920436|pid:none) Penicillium chrysogenum Wiscons... 68 1e-09
CU633900_394(CU633900|pid:none) Podospora anserina genomic DNA c... 68 1e-09
AY811635_1(AY811635|pid:none) Schistosoma japonicum clone SJCHGC... 66 4e-09
FN392320_1142(FN392320|pid:none) Pichia pastoris GS115 chromosom... 60 2e-07
AK294807_1(AK294807|pid:none) Homo sapiens cDNA FLJ52991 complet... 54 2e-05
CT005244_108(CT005244|pid:none) Leishmania major strain Friedlin... 54 2e-05
CP000083_417(CP000083|pid:none) Colwellia psychrerythraea 34H, c... 50 4e-04
FN392322_451(FN392322|pid:none) Pichia pastoris GS115 chromosome... 48 0.001
CR382137_82(CR382137|pid:none) Debaryomyces hansenii strain CBS7... 48 0.001
CP000767_23(CP000767|pid:none) Campylobacter curvus 525.92, comp... 45 0.010
AY123117_1(AY123117|pid:none) Griffithsia japonica glycoprotein ... 43 0.037
CP001047_144(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 43 0.048
CP001172_84(CP001172|pid:none) Acinetobacter baumannii AB307-029... 42 0.083
CU459141_81(CU459141|pid:none) Acinetobacter baumannii str. AYE,... 42 0.083
BX950851_1491(BX950851|pid:none) Erwinia carotovora subsp. atros... 42 0.11
AL844504_32(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 41 0.14
BT067625_1(BT067625|pid:none) Zea mays full-length cDNA clone ZM... 41 0.14
AJ243902_1(AJ243902|pid:none) Mycoplasma hominis p75 gene, strai... 41 0.18
AC146709_12(AC146709|pid:none) Medicago truncatula clone mth2-90... 41 0.18
CP000885_264(CP000885|pid:none) Clostridium phytofermentans ISDg... 41 0.18
AF081867_1(AF081867|pid:none) Homo sapiens endoplasmic reticulum... 40 0.31
(Q10411) RecName: Full=Sporulation-specific protein 15; &CU3296... 40 0.31
CP001078_3036(CP001078|pid:none) Clostridium botulinum E3 str. A... 40 0.41
AJ243901_1(AJ243901|pid:none) Mycoplasma hominis p75 gene, strai... 40 0.41
AE014188_221(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.41
(Q55CW1) RecName: Full=Probable inactive serine/threonine-protei... 39 0.54
(Q14643) RecName: Full=Inositol 1,4,5-trisphosphate receptor typ... 39 0.70
B36579(B36579) inositol 1,4,5-triphosphate receptor 2 - rat &J0... 39 0.70
AB208868_1(AB208868|pid:none) Homo sapiens mRNA for Inositol 1,4... 39 0.70
BC172648_1(BC172648|pid:none) Synthetic construct Mus musculus c... 39 0.70
(Q9TU34) RecName: Full=Inositol 1,4,5-trisphosphate receptor typ... 39 0.70
A36579(A36579) inositol 1,4,5-triphosphate receptor 1 - rat &J0... 39 0.70
AF387641_1(AF387641|pid:none) Limulus polyphemus syntaxin 1A mRN... 39 0.70
L46702_1(L46702|pid:none) Solanum tuberosum kinesin heavy chain-... 39 0.70
L38019_1(L38019|pid:none) Homo sapiens inositol 1,4,5-trisphosph... 39 0.70
D26070_1(D26070|pid:none) Human mRNA for type 1 inositol 1,4,5-t... 39 0.70
CP001435_32(CP001435|pid:none) Borrelia valaisiana VS116 plasmid... 39 0.70
CP001202_53(CP001202|pid:none) Borrelia burgdorferi ZS7 plasmid ... 39 0.70
A55713(A55713)inositol 1,4,5-triphosphate receptor type 1 - human 39 0.70
CP000879_224(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 39 0.91
CU928170_262(CU928170|pid:none) Kluyveromyces thermotolerans str... 39 0.91
(Q92351) RecName: Full=Spindle pole body protein pcp1; &AF34850... 38 1.2
(P28023) RecName: Full=Dynactin subunit 1; AltName: Full=150 kDa... 38 1.2
FN357509_13(FN357509|pid:none) Schistosoma mansoni genome sequen... 38 1.2
AY166678_1(AY166678|pid:none) Plasmodium reichenowi reticulocyte... 38 1.6
AE014188_476(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 38 1.6
AE014188_146(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 38 1.6
L04161_1(L04161|pid:none) Plasmodium falciparum clone Pfg377 Pfs... 38 1.6
AE006641_1370(AE006641|pid:none) Sulfolobus solfataricus P2, com... 38 1.6
AB090088_1(AB090088|pid:none) Helicobacter pylori gene for CagA,... 38 1.6
AP008981_1481(AP008981|pid:none) Orientia tsutsugamushi str. Ike... 38 1.6
CP000969_911(CP000969|pid:none) Thermotoga sp. RQ2, complete gen... 38 1.6
CP000480_4160(CP000480|pid:none) Mycobacterium smegmatis str. MC... 38 1.6
(Q9WYR0) RecName: Full=Methyl-accepting chemotaxis protein 1; &... 37 2.0
AE002133_9(AE002133|pid:none) Ureaplasma parvum serovar 3 str. A... 37 2.0
CR940347_687(CR940347|pid:none) Theileria annulata strain Ankara... 37 2.0
CR940353_227(CR940353|pid:none) Theileria annulata strain Ankara... 37 2.0
(P43047) RecName: Full=Uncharacterized protein MCAP_0864; AltNam... 37 2.0
AM910996_673(AM910996|pid:none) Plasmodium knowlesi strain H chr... 37 2.0
CP000492_72(CP000492|pid:none) Chlorobium phaeobacteroides DSM 2... 37 2.0
JX0289(JX0289)galactose-specific isolectin A chain - Erythrina v... 37 2.7
AM920431_1214(AM920431|pid:none) Penicillium chrysogenum Wiscons... 37 2.7
CP000702_9(CP000702|pid:none) Thermotoga petrophila RKU-1, compl... 37 2.7
FM992691_467(FM992691|pid:none) Candida dubliniensis CD36 chromo... 37 2.7
AC146709_13(AC146709|pid:none) Medicago truncatula clone mth2-90... 37 2.7
CP001056_2911(CP001056|pid:none) Clostridium botulinum B str. Ek... 37 2.7
AY204751_1(AY204751|pid:none) Homo sapiens ABC A13 mRNA, complet... 37 2.7
CP000969_9(CP000969|pid:none) Thermotoga sp. RQ2, complete genome. 37 2.7
(Q86UQ4) RecName: Full=ATP-binding cassette sub-family A member ... 37 2.7
(P12844) RecName: Full=Myosin-3; AltName: Full=Myosin heavy chai... 37 2.7
CP001616_2815(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 37 2.7
S02771(T23622;S02771)myosin heavy chain A [similarity] - Caenorh... 37 2.7
CP000382_1841(CP000382|pid:none) Clostridium novyi NT, complete ... 37 2.7
FJ839683_1(FJ839683|pid:none) Erythrina variegata lectin gene, p... 37 3.5
FB905185_1(FB905185|pid:none) Sequence 124458 from Patent WO2008... 37 3.5
AK100955_1(AK100955|pid:none) Oryza sativa Japonica Group cDNA c... 37 3.5
AE014188_497(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 37 3.5
FB905173_1(FB905173|pid:none) Sequence 124446 from Patent WO2008... 37 3.5
(O42707) RecName: Full=L-type lectin-like domain-containing prot... 36 4.5
FM992693_231(FM992693|pid:none) Candida dubliniensis CD36 chromo... 36 4.5
AL929357_69(AL929357|pid:none) Plasmodium falciparum strain 3D7,... 36 4.5
DQ889949_1(DQ889949|pid:none) Saccharomyces pastorianus strain 9... 36 4.5
AL844508_227(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 36 4.5
CU928178_85(CU928178|pid:none) Zygosaccharomyces rouxii strain C... 36 4.5
JX0290(JX0290)galactose-specific isolectin B chain - Erythrina v... 36 4.5
AL445564_123(AL445564|pid:none) Mycoplasma pulmonis (strain UAB ... 36 4.5
(Q6MT18) RecName: Full=Phenylalanyl-tRNA synthetase beta chain; ... 36 4.5
K02620_1(K02620|pid:none) D.melanogaster tropomyosin gene isofor... 36 5.9
AF515464_1(AF515464|pid:none) Biomphalaria glabrata fibrinogen r... 36 5.9
AF238235_1(AF238235|pid:none) Entamoeba histolytica diaphanous p... 36 5.9
CP000673_2528(CP000673|pid:none) Clostridium kluyveri DSM 555, c... 36 5.9
EU020874_1(EU020874|pid:none) Limulus polyphemus clone Lpo36f1 p... 36 5.9
(Q12396) RecName: Full=Protein EMP46; AltName: Full=46 kDa endom... 36 5.9
AM422018_522(AM422018|pid:none) Candidatus Phytoplasma australie... 36 5.9
AE014187_167(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 36 5.9
AP009049_2287(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 36 5.9
(P55746) RecName: Full=Cytotoxicity-associated immunodominant an... 35 7.7
(Q8MJ03) RecName: Full=Oxygen-regulated protein 1; AltName: Full... 35 7.7
CP000133_2302(CP000133|pid:none) Rhizobium etli CFN 42, complete... 35 7.7
DQ319003_1(DQ319003|pid:none) Synthetic construct chimeric lecti... 35 7.7
CP001078_2653(CP001078|pid:none) Clostridium botulinum E3 str. A... 35 7.7
AE007869_2169(AE007869|pid:none) Agrobacterium tumefaciens str. ... 35 7.7
CP001390_3743(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 35 7.7
CP000976_495(CP000976|pid:none) Borrelia duttonii Ly, complete g... 35 7.7
D97626(D97626)hypothetical protein AGR_C_4040 [imported] - Agrob... 35 7.7
(O42657) RecName: Full=GRIP and coiled-coil domain-containing pr... 35 7.7
CP000246_1573(CP000246|pid:none) Clostridium perfringens ATCC 13... 35 7.7
(Q9PN98) RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotran... 35 7.7

>AC115599_8(AC115599|pid:none) Dictyostelium discoideum chromosome 2
map 4229098-4354721 strain AX4, complete sequence.
Length = 569

Score = 897 bits (2319), Expect = 0.0
Identities = 459/540 (85%), Positives = 459/540 (85%)
Frame = +2

Query: 113 RVESYPTYGGSNSANIRREDRHSFRAPFLQRGTGILYWDIEGSTIVNDDFIRLTSDQKSL 292
RVESYPTYGGSNSANIRREDRHSFRAPFLQ GTGILYWDIEGSTIVNDDFIRLTSDQKSL
Sbjct: 19 RVESYPTYGGSNSANIRREDRHSFRAPFLQSGTGILYWDIEGSTIVNDDFIRLTSDQKSL 78

Query: 293 HGAIWNTEPMEQPWWEVVFEFRVHGAGRIGADGIALWLVDRKEGNSQDFSIYGSKNLWKG 472
HGAIWNTEPMEQPWWEVVFEFRVHGAGRIGADGIALWLVDRKEGNSQDFSIYGSKNLWKG
Sbjct: 79 HGAIWNTEPMEQPWWEVVFEFRVHGAGRIGADGIALWLVDRKEGNSQDFSIYGSKNLWKG 138

Query: 473 LAIIFDTFDNDQNGDHPLISVFYNDGTKFYETAKDGSNMKLGSCSSRYRNDKHNAKSRIR 652
LAIIFDTFDNDQNGDHPLISVFYNDGTKFYETAKDGSNMKLGSCSSRYRNDKHNAKSRIR
Sbjct: 139 LAIIFDTFDNDQNGDHPLISVFYNDGTKFYETAKDGSNMKLGSCSSRYRNDKHNAKSRIR 198

Query: 653 YYHGLLSVEIDPNGSGIFEKCVQDVRLDIPTRYTFGVSAATGGLTDNHDVYSFDTFSLDA 832
YYHGLLSVEIDPNGSGIFEKCVQDVRLDIPTRYTFGVSAATGGLTDNHDVYSFDTFSLDA
Sbjct: 199 YYHGLLSVEIDPNGSGIFEKCVQDVRLDIPTRYTFGVSAATGGLTDNHDVYSFDTFSLDA 258

Query: 833 SVSXXXXXXXXXVQFERERLEKQRLEYELXXXXXXXXXXXXXXXXXXXXXXXXXXXNNQD 1012
SVS VQFERERLEKQRLEYEL NNQD
Sbjct: 259 SVSNQNTNNYNNVQFERERLEKQRLEYELQQTQQQQTQQQQQQQQQQQQTQQQTQQNNQD 318

Query: 1013 KEXXXXXXXXXXXXXXXXXXXXXXDLIEKLNEIXXXXXXXXXXXXXXXXXXXXXXKLQDE 1192
KE DLIEKLNEI KLQDE
Sbjct: 319 KEYQEFLQYKAQQQQQNNYQQTQNDLIEKLNEIQQEQQQTQPPQQQQQQTQPPQQKLQDE 378

Query: 1193 IKNLSEKEQIGFLVKKVDSLVEAIHSLHVILDDPDYKKSFDGLRDQVNVISQALVSLSQG 1372
IKNLSEKEQIGFLVKKVDSLVEAIHSLHVILDDPDYKKSFDGLRDQVNVISQALVSLSQG
Sbjct: 379 IKNLSEKEQIGFLVKKVDSLVEAIHSLHVILDDPDYKKSFDGLRDQVNVISQALVSLSQG 438

Query: 1373 SLKVKDFESFRSTYDQKQSQFIKDFYDFKSTMQDLKATINNRFNNQDNDVTKSIESVNMN 1552
SLKVKDFESFRSTYDQKQSQFIKDFYDFKSTMQDLKATINNRFNNQDNDVTKSIESVNMN
Sbjct: 439 SLKVKDFESFRSTYDQKQSQFIKDFYDFKSTMQDLKATINNRFNNQDNDVTKSIESVNMN 498

Query: 1553 LNSLRKLVEASTRDTQKISSILNSNADELANTIQKHSSFGFWTYFLFVQAIFIFGFVFWR 1732
LNSLRKLVEASTRDTQKISSILNSNADELANTIQKHSSFGFWTYFLFVQAIFIFGFVFWR
Sbjct: 499 LNSLRKLVEASTRDTQKISSILNSNADELANTIQKHSSFGFWTYFLFVQAIFIFGFVFWR 558

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,264,838,652
Number of extensions: 42149134
Number of successful extensions: 131459
Number of sequences better than 10.0: 174
Number of HSP's gapped: 130053
Number of HSP's successfully gapped: 176
Length of query: 659
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 524
Effective length of database: 614,245,399
Effective search space: 321864589076
Effective search space used: 321864589076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.98 gvh: 0.63 alm: 0.14 top: 0.13 tms: 0.13 mit: 0.37 mip: 0.07
nuc: 0.04 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: cytoplasmic
8.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for Contig-U14966-1 is end

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0