Contig-U14954-1 |
Contig ID |
Contig-U14954-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1435 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
1898091 |
End point |
1896657 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
54 |
Number of EST |
82 |
Link to clone list |
U14954 |
List of clone(s) |
est1=VFA307F,1,487 est2=SFH361F,5,520 est3=AFC648F,23,604 est4=AFE165F,23,601 est5=AFE265F,23,349 est6=AFF351F,23,230 est7=SFJ573F,23,347 est8=SFK652F,23,601 est9=AFC521F,24,508 est10=AFC522F,24,492 est11=SFB453F,34,554 est12=CFE268F,35,585 est13=AFI683F,37,555 est14=VFD727F,38,528 est15=VFN436F,45,635 est16=AFH823F,61,621 est17=SFA677F,67,602 est18=VFC180F,68,461 est19=VFM877F,69,714 est20=VFB114F,71,601 est21=VFB228F,71,620 est22=CHD582F,73,709 est23=SFI162F,75,556 est24=SFI657F,83,713 est25=SFD510F,84,717 est26=SFH349F,84,725 est27=SFK726F,84,642 est28=CFA408F,85,602 est29=CFB709F,85,712 est30=VFJ196F,85,721 est31=VFJ219F,85,716 est32=VFM810F,85,723 est33=VFN564F,85,659 est34=VHP773F,85,644 est35=VFA392F,88,715 est36=SFE119F,89,642 est37=VFB675E,89,1377 est38=VFF366F,89,641 est39=AFD586F,90,639 est40=CFA225F,90,716 est41=SFI824F,90,647 est42=VFG714F,92,587 est43=VFL178F,92,654 est44=AFJ692F,93,711 est45=VFG445F,93,634 est46=SFG207F,100,659 est47=SLB609F,102,613 est48=SLK320F,104,203 est49=VFC875F,110,605 est50=SFB715F,139,646 est51=VFG714Z,622,1379 est52=AFO855Z,645,1374 est53=SFK652Z,650,1380 est54=SFK726Z,690,1341 est55=CFA225Z,692,1375 est56=CHD582Z,692,1377 est57=VFB228Z,692,1377 est58=VFM810Z,692,1377 est59=SFI657Z,694,1380 est60=VFB114Z,694,1377 est61=VFG445Z,694,1378 est62=SFI824Z,695,1380 est63=VFN137Z,721,1390 est64=VHP773Z,723,1390 est65=CFE268Z,735,1364 est66=CFA408Z,736,1376 est67=VFC875Z,736,1377 est68=VFL178Z,740,1384 est69=AFD586Z,741,1375 est70=AFC648Z,743,1374 est71=SFE119Z,748,1378 est72=SFH349Z,749,1379 est73=SLB422Z,860,1435 est74=VFN564Z,876,1314 est75=SLC315Z,897,1434 est76=SLB609Z,969,1399 est77=VFA307Z,973,1171 est78=SFI162Z,995,1171 est79=VFF366Z,1018,1367 est80=SFA677Z,1086,1364 est81=VFC180Z,1111,1367 est82=SLK320Z,1240,1400
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Translated Amino Acid sequence |
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Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1. 6 |
Homology vs DNA |
Query= Contig-U14954-1 (Contig-U14954-1Q) /CSM_Contig/Contig-U14954-1Q.Seq.d (1435 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(DQ143912) Dictyostelium discoideum CF60 (cf60) mRNA, comple... 1538 0.0 2 (BJ431432) Dictyostelium discoideum cDNA clone:ddv14l03, 3' ... 1499 0.0 1 (BJ401232) Dictyostelium discoideum cDNA clone:dds22g14, 3' ... 1431 0.0 1 (BJ346364) Dictyostelium discoideum cDNA clone:dda30n14, 3' ... 1390 0.0 2 (BJ376747) Dictyostelium discoideum cDNA clone:ddc29c21, 3' ... 1360 0.0 1 (BJ429762) Dictyostelium discoideum cDNA clone:ddv4e20, 3' e... 1358 0.0 2 (BJ403075) Dictyostelium discoideum cDNA clone:dds18p06, 3' ... 1358 0.0 1 (BJ435087) Dictyostelium discoideum cDNA clone:ddv26d04, 3' ... 1356 0.0 1 (BJ431240) Dictyostelium discoideum cDNA clone:ddv13j12, 3' ... 1354 0.0 1 (BJ402856) Dictyostelium discoideum cDNA clone:dds18a16, 3' ... 1352 0.0 1 (BJ435506) Dictyostelium discoideum cDNA clone:ddv27i09, 3' ... 1312 0.0 1 (BJ371724) Dictyostelium discoideum cDNA clone:ddc1a08, 3' e... 1281 0.0 2 (BJ434098) Dictyostelium discoideum cDNA clone:ddv23k19, 3' ... 1277 0.0 1 (BJ430313) Dictyostelium discoideum cDNA clone:ddv6f20, 3' e... 1271 0.0 1 (BJ429391) Dictyostelium discoideum cDNA clone:ddv3g08, 3' e... 1267 0.0 2 (BJ429335) Dictyostelium discoideum cDNA clone:ddv3k03, 3' e... 1251 0.0 3 (BJ400938) Dictyostelium discoideum cDNA clone:dds15b13, 3' ... 1249 0.0 1 (BJ400167) Dictyostelium discoideum cDNA clone:dds9e05, 3' e... 1249 0.0 1 (BJ374645) Dictyostelium discoideum cDNA clone:ddc9g18, 3' e... 1249 0.0 1 (BJ446442) Dictyostelium discoideum cDNA clone:ddv62b19, 3' ... 1219 0.0 2 (BJ391185) Dictyostelium discoideum cDNA clone:dds15b13, 5' ... 1217 0.0 2 (BJ416631) Dictyostelium discoideum cDNA clone:ddv26d04, 5' ... 1215 0.0 2 (BJ414642) Dictyostelium discoideum cDNA clone:ddv19o23, 5' ... 1203 0.0 1 (BJ388119) Dictyostelium discoideum cDNA clone:dds8c03, 5' e... 1201 0.0 2 (BJ416578) Dictyostelium discoideum cDNA clone:ddv26j20, 5' ... 1197 0.0 2 (BJ358364) Dictyostelium discoideum cDNA clone:ddc1a08, 5' e... 1195 0.0 1 (BJ371721) Dictyostelium discoideum cDNA clone:ddc1p02, 3' e... 1193 0.0 2 (BJ341949) Dictyostelium discoideum cDNA clone:dda8k21, 3' e... 1193 0.0 2 (BJ341390) Dictyostelium discoideum cDNA clone:dda6o12, 3' e... 1172 0.0 2 (BJ410787) Dictyostelium discoideum cDNA clone:ddv1h23, 5' e... 1144 0.0 2 (AU033772) Dictyostelium discoideum slug cDNA, clone SLB422. 1059 0.0 1 (BJ427539) Dictyostelium discoideum cDNA clone:ddv62b19, 5' ... 1053 0.0 2 (BJ412918) Dictyostelium discoideum cDNA clone:ddv13j12, 5' ... 1041 0.0 1 (BJ390398) Dictyostelium discoideum cDNA clone:dds22d07, 5' ... 1041 0.0 2 (BJ389369) Dictyostelium discoideum cDNA clone:dds18a16, 5' ... 1033 0.0 3 (BJ415830) Dictyostelium discoideum cDNA clone:ddv23k19, 5' ... 920 0.0 2 (BJ410179) Dictyostelium discoideum cDNA clone:ddv11d17, 5' ... 920 0.0 3 (BJ391313) Dictyostelium discoideum cDNA clone:dds13m02, 5' ... 920 0.0 2 (BJ364063) Dictyostelium discoideum cDNA clone:ddc29c21, 5' ... 920 0.0 3 (BJ414404) Dictyostelium discoideum cDNA clone:ddv19e06, 5' ... 914 0.0 2 (BJ417762) Dictyostelium discoideum cDNA clone:ddv28o15, 5' ... 912 0.0 3 (BJ360057) Dictyostelium discoideum cDNA clone:ddc4b03, 5' e... 912 0.0 2 (BJ327547) Dictyostelium discoideum cDNA clone:dda20g24, 5' ... 912 0.0 2 (BJ411531) Dictyostelium discoideum cDNA clone:ddv4e20, 5' e... 898 0.0 3 (BJ401140) Dictyostelium discoideum cDNA clone:dds22d07, 3' ... 872 0.0 2 (BJ389290) Dictyostelium discoideum cDNA clone:dds18p06, 5' ... 848 0.0 2 (BJ388337) Dictyostelium discoideum cDNA clone:dds9e05, 5' e... 920 0.0 2 (BJ326359) Dictyostelium discoideum cDNA clone:dda16n06, 5' ... 1015 0.0 2 (BJ324957) Dictyostelium discoideum cDNA clone:dda8k21, 5' e... 912 0.0 2 (BJ411181) Dictyostelium discoideum cDNA clone:ddv3g08, 5' e... 920 0.0 3 (BJ416799) Dictyostelium discoideum cDNA clone:ddv27h10, 5' ... 886 0.0 3 (BJ330167) Dictyostelium discoideum cDNA clone:dda27i13, 5' ... 886 0.0 3 (BJ325061) Dictyostelium discoideum cDNA clone:dda9a17, 5' e... 959 0.0 2 (BJ390478) Dictyostelium discoideum cDNA clone:dds22g14, 5' ... 957 0.0 2 (BJ387478) Dictyostelium discoideum cDNA clone:dds2i20, 5' e... 920 0.0 3 (BJ387681) Dictyostelium discoideum cDNA clone:dds4n03, 5' e... 833 0.0 3 (AU034243) Dictyostelium discoideum slug cDNA, clone SLC315. 965 0.0 1 (BJ412057) Dictyostelium discoideum cDNA clone:ddv6f20, 5' e... 920 0.0 2 (BJ411137) Dictyostelium discoideum cDNA clone:ddv3k03, 5' e... 914 0.0 2 (BJ358361) Dictyostelium discoideum cDNA clone:ddc1p02, 5' e... 912 0.0 2 (BJ413092) Dictyostelium discoideum cDNA clone:ddv14l03, 5' ... 948 0.0 1 (AU060824) Dictyostelium discoideum slug cDNA, clone SLB609. 801 0.0 3 (BJ324469) Dictyostelium discoideum cDNA clone:dda6o12, 5' e... 880 0.0 3 (BJ361049) Dictyostelium discoideum cDNA clone:ddc9g18, 5' e... 898 0.0 2 (BJ327000) Dictyostelium discoideum cDNA clone:dda18e22, 5' ... 884 0.0 2 (BJ387597) Dictyostelium discoideum cDNA clone:dds3j14, 5' e... 874 0.0 2 (BJ389136) Dictyostelium discoideum cDNA clone:dds17k15, 5' ... 769 0.0 2 (BJ435858) Dictyostelium discoideum cDNA clone:ddv28o15, 3' ... 856 0.0 1 (BJ412401) Dictyostelium discoideum cDNA clone:ddv8f07, 5' e... 831 0.0 2 (AU033915) Dictyostelium discoideum slug cDNA, clone SLB609. 842 0.0 1 (BJ324397) Dictyostelium discoideum cDNA clone:dda6i05, 5' e... 728 0.0 2 (BJ391207) Dictyostelium discoideum cDNA clone:dds15j15, 5' ... 714 0.0 2 (BJ411820) Dictyostelium discoideum cDNA clone:ddv5o19, 5' e... 698 0.0 2 (BJ324405) Dictyostelium discoideum cDNA clone:dda6k05, 5' e... 684 0.0 2 (BJ410606) Dictyostelium discoideum cDNA clone:ddv1n01, 5' e... 638 0.0 2 (BJ428326) Dictyostelium discoideum cDNA clone:ddv11d17, 3' ... 541 e-153 2 (BJ430060) Dictyostelium discoideum cDNA clone:ddv5o19, 3' e... 385 e-133 2 (BJ389971) Dictyostelium discoideum cDNA clone:dds20a19, 5' ... 470 e-132 2 (BJ398877) Dictyostelium discoideum cDNA clone:dds2i20, 3' e... 460 e-125 1 (BJ325062) Dictyostelium discoideum cDNA clone:dda9a18, 5' e... 422 e-118 2 (BJ428770) Dictyostelium discoideum cDNA clone:ddv1n01, 3' e... 313 1e-80 1 (AU053970) Dictyostelium discoideum slug cDNA, clone SLK320. 307 6e-79 1 (BJ323645) Dictyostelium discoideum cDNA clone:dda11f13, 5' ... 224 7e-54 1 (AU060534) Dictyostelium discoideum slug cDNA, clone SLK320. 182 2e-41 1 (BJ402665) Dictyostelium discoideum cDNA clone:dds17k15, 3' ... 167 1e-36 1 (AC219423) Bos taurus clone CH240-339N8, WORKING DRAFT SEQUE... 34 0.14 2 (AC167354) Bos taurus clone CH240-185G5, WORKING DRAFT SEQUE... 34 0.14 2 (CU914217) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.51 2 (CU606986) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.52 2 (EJ177697) 1092344107104 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.93 1 (BH462778) BOHPM29TF BOHP Brassica oleracea genomic clone BO... 42 1.1 2 (AX458609) Sequence 155 from Patent WO0246454. 42 2.6 2 (AB170129) Macaca fascicularis brain cDNA clone: QbsB-10361,... 46 3.7 1 (AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 46 3.7 1 (AP002953) Oryza sativa Japonica Group genomic DNA, chromoso... 46 3.7 1 (CU855866) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.7 1 (AC204582) Zea mays chromosome 6 clone CH201-319L2; ZMMBBc03... 46 3.7 1 (AC186898) Zea mays chromosome 6 clone CH201-37I9; ZMMBBc003... 46 3.7 1 (ER473591) 1092963978570 Global-Ocean-Sampling_GS-35-01-01-1... 46 3.7 1 (EB820198) ZM_BFb0379D03.f ZM_BFb Zea mays cDNA 3', mRNA seq... 46 3.7 1
>(DQ143912) Dictyostelium discoideum CF60 (cf60) mRNA, complete cds. Length = 1251
Score = 1538 bits (776), Expect(2) = 0.0 Identities = 776/776 (100%) Strand = Plus / Plus
Query: 573 ccgatgtaccaagaaccattcaatcggttcaaggtcatttaactgctttattcccaccaa 632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 ccgatgtaccaagaaccattcaatcggttcaaggtcatttaactgctttattcccaccaa 535
Query: 633 ccaccgttacaagtggttcaggtattccaattatcaatatcaatacaatggataactatt 692 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 ccaccgttacaagtggttcaggtattccaattatcaatatcaatacaatggataactatt 595
Query: 693 atgaaaatatgacaccaaatccaactctttgcccagagttggctgttttgatcgccaata 752 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 596 atgaaaatatgacaccaaatccaactctttgcccagagttggctgttttgatcgccaata 655
Query: 753 ctaccaccacaccagagtggggggaattcattaccaacaccacccaattaaaagaggatg 812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 ctaccaccacaccagagtggggggaattcattaccaacaccacccaattaaaagaggatg 715
Query: 813 ttatggaaacattgggtatctctgtattcccaggttggagttcattaatggatttattct 872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 ttatggaaacattgggtatctctgtattcccaggttggagttcattaatggatttattct 775
Query: 873 ttgcaactcaatgtcacgatttcccattaccagagggtgtcactcaagatatggtcactc 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 776 ttgcaactcaatgtcacgatttcccattaccagagggtgtcactcaagatatggtcactc 835
Query: 933 aagtctatgaagctgcctattggcaataccaatatcaactctctttcccaatgattgctc 992 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 836 aagtctatgaagctgcctattggcaataccaatatcaactctctttcccaatgattgctc 895
Query: 993 gtcttggtatgtctactttcttagaggaggtagtcgataatattagagcttttgttaatg 1052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 896 gtcttggtatgtctactttcttagaggaggtagtcgataatattagagcttttgttaatg 955
Query: 1053 gtacttcctctgtcaaatatatcgttttctctggtcatgatgattcagttggtccattca 1112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 956 gtacttcctctgtcaaatatatcgttttctctggtcatgatgattcagttggtccattca 1015
Query: 1113 ctaatttatttggtctcatgaaagaatggccaccttatgcttcacatgttgaacttgaat 1172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1016 ctaatttatttggtctcatgaaagaatggccaccttatgcttcacatgttgaacttgaat 1075
Query: 1173 tgtggtctgatgaaaaagataattatttcctccaatttaaatttaatggtcaaagttata 1232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1076 tgtggtctgatgaaaaagataattatttcctccaatttaaatttaatggtcaaagttata 1135
Query: 1233 cattaaatggttgtgaagatgttatgtgcccaattgattcattctttgaaactgcatact 1292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1136 cattaaatggttgtgaagatgttatgtgcccaattgattcattctttgaaactgcatact 1195
Query: 1293 caattttagttccaaattatgctgatgcatgttcaaattcaacaatgacattttaa 1348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1196 caattttagttccaaattatgctgatgcatgttcaaattcaacaatgacattttaa 1251
Score = 920 bits (464), Expect(2) = 0.0 Identities = 464/464 (100%) Strand = Plus / Plus
Query: 110 gtgcattaataacattatttttagtttcactaattttgggtgtttctttatcccaaaaac 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14 gtgcattaataacattatttttagtttcactaattttgggtgtttctttatcccaaaaac 73
Query: 170 cattttattgccaagcaccagaaccaacaccaagtttaaatacagatggattaacattaa 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74 cattttattgccaagcaccagaaccaacaccaagtttaaatacagatggattaacattaa 133
Query: 230 agatggtacaaattttaacaagacatggtgatagaacaccattgtatagtacattaaaac 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134 agatggtacaaattttaacaagacatggtgatagaacaccattgtatagtacattaaaac 193
Query: 290 caacaatgaatacatgggattgtaatttaggatggttaatggtatcaagtttaaataatg 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 194 caacaatgaatacatgggattgtaatttaggatggttaatggtatcaagtttaaataatg 253
Query: 350 taccaggagcagcaacagatgttgatagattatttagaaaagtttatatgccaaatagag 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 taccaggagcagcaacagatgttgatagattatttagaaaagtttatatgccaaatagag 313
Query: 410 aatatttcccaggtaattgttcagacggtcaattgacctcacttggattccaacaacatt 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 aatatttcccaggtaattgttcagacggtcaattgacctcacttggattccaacaacatt 373
Query: 470 tacaattaggtcaaagtttacgtcaactctacgttgataaatatgaattattaccaagtg 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 tacaattaggtcaaagtttacgtcaactctacgttgataaatatgaattattaccaagtg 433
Query: 530 aattatcagtggatgcagcatcaaccatttgggttcgttcaacc 573 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 aattatcagtggatgcagcatcaaccatttgggttcgttcaacc 477
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,535,220,732 Number of extensions: 89097352 Number of successful extensions: 7217088 Number of sequences better than 10.0: 116 Length of query: 1435 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1411 Effective length of database: 97,308,875,965 Effective search space: 137302823986615 Effective search space used: 137302823986615 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.13 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
19 |
AH (FL, L) |
0 |
AF (FL, S) |
11 |
SL (DIR, L) |
4 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
14 |
CH (FL, L) |
1 |
CF (FL, S) |
4 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |