Contig-U14948-1
Contig ID Contig-U14948-1
Contig update 2004. 6.11
Contig sequence
>Contig-U14948-1 (Contig-U14948-1Q) /CSM_Contig/Contig-U14948-1Q.Seq.d
CACTGTTGGCCTACTGGAAATTTGATTTATCTTTATCTTACTTTTTACCA
TACAATTCAAACTTTTTTGTATAGTTTTTTATAATTTTAAAGAAAAAATA
AAAAGATGTCAGCTGTTGATGATCAACAAAATGCAGATAAGCAAGTTGAA
CAATGGAAAATCAAAAAATTAATTAAAAATTTGGAAGCTGCCAGAGGTAA
TGGTACATCTATGATTTCATTAATTATTCGTCCAGGTGATCAAATTGCAA
AAGTTAATAAAATGTTAGCAGAAGAGTATGGTACAGCATCAAATATTAAA
TCAAGAGTTAATAGATTATCAGTATTGGGTGCAATTACATCAGCACAACA
AAGATTAAAGTTATATACTAAAGTACCAGATAATGGTTTAGTTATTTATT
GCGGTACAATGGTTACAGATGAAGGTAAAGAGAAACCAGTACGTATCGAT
ATTGAACCATTCAAACCAATCAATACCTCACTCTATTTATGTGATAATAA
ATTCCATACAGCACCATTGGGTGAATTATTAGAGAGTGATGAAAAGTTTG
GTTTCATCGTCGTAGATGGTAATGGTGCACTCTTTGGTTTATTATGTGGT
TCAACCAGAACAGTTCTCCATAAGATTACAGTAGATCTCCCAAAGAAACA
CGGTCGTGGTGGTCAATCTGCCCTTCGTTTCGCTCGTCTTCGTATGGAAA
AACGTCACAATTACGTTCGTAAAGTTTCAGAGTTGGCCACCCAATTCTAC
GTCACCAATGATAAACCAAACGTTTCAGGTTTGATTTTAGCTGGTTCTGC
CGATTTCAAGACTGAACTTGGTACCTCTGATATGTTTGATCAACGTCTTC
GTGAAAAGATCATTAAAATCGTCGATGTTTCCTATGGTGGTGATAATGGT
TTCAATCAAGCTATCGAATTATCTGGTGAAGTTCTCTCAAGTGTCAAATT
CATTCAAGAGAAGAAATTAATCTCACAATTCTTTGAAGAGATCGCACAAG
ACACTGGTAAGTATTGTTTCGGTATCGCTGATACTTTGAAAGCTTTGGAC
TTGGGTGCTGCTCACACTTTAATCGTTTGGGAATCATTGGAAACAATTCG
TTACTTACTTCGTTTACCAACTGGTGAAGAGAAAGTCATCTTTTTAAATA
AAGATCAAAATAAAGATGCCTCTGTCTTTAAGGATAAAGAATCTGGTCTT
GACTATGAAATCGTCGAAGAAATGCCAATCGTTGAGTGGTTCGCCAATAA
CTACAAAAACTTTGGTGCCTCTCTCGAATTCGTCACCAACAAATCTCAAG
AAGGTTCACAATTCTGTAAAGGTTTTGGTGGTTTGGGTGGTTTACTCCGT
TATCAAGTAGATTTCGCTCAACTCAATGATTTCGATAATCCAGATGAGAA
TGAATACGATGATAGTGATTCAGACTTTTGACCAATTGAAAAAACCAGCA
ACAGAAATGGTACTGGTTTGGTCTCCTCCACTTTTAAGGTTGCCCCTTCC
TTCTCTACCATTCAAAAACAACAACAACAACAACAAAAATCACTTTCACC
AAAAACAACATTAACAACAACTATTACAACAACTACAACAACAACAACAA
TAATTAAAGAAAAATACAAAAATGAAAAAAATACAACTACAACTACATCT
AATACAAACAAACCATTACAAATCAATTCCATTAATAACAAAAACGGTTT
AATCAATGAATCATCATCATCATCATCAACTCTTTCAACACTTGAAACAA
ATGTAAATTCCAGTGAATTATTTGTATCGTGTGAAAAGTTGTCCAACAAC
AATTATCATCATCAAAATGAAGATGATATTGTTGTTTCATTGATTCAAAC
TGAAAGAGTAAACATACAAAAGAAGTTAGGGGCTTAAACCATTCTCTAAA
AATAAATTAAATAAAAAAAATGGCTTTGTTTTGTCGTTAGTTGTCACTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCAACAAAAATCACTTTCAC
CAAAAACAACATTAACAACAACTATTACAACAACTACAACAACAACAACA
ATAATTAAAGAAAAATACAAAAATGAAAAAAATACAACTACAACTACATC
TAATACAAACAAACCATTACAAATCAATTCCATTAATAACAAAAACGGTT
TAATCAATGAATCATCATCATCATCATCAACTCTTTCAACACTTGAAACA
AATGTAAATTCCAGTGAATTATTTGTATCGTGTGAAAAGTTGTCCAACAA
CAATTATCATCATCAAAATGAAGATGATATGTTGTTTCATTGATTCAAAC
TGAAAGAGTAAACATACAAAAGAAGTTAGGGGCTTAAACCATTCTCTAAA
AATAAATTAAATAAAAAAAATGGCTTTGTTTTGTCGTTAGTTGTCACTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGC

Gap no gap
Contig length 2532
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1731652
End point 1729642
Strand (PLUS/MINUS) MINUS
Number of clones 32
Number of EST 58
Link to clone list U14948
List of clone(s)

est1=AFJ412F,1,589
est2=AFD769F,17,604
est3=AHN667F,17,595
est4=VFK565F,17,602
est5=VFD523F,18,605
est6=VFE328F,18,571
est7=VFM750F,18,609
est8=VHO495F,18,601
est9=AFE158F,24,589
est10=SFL448F,24,583
est11=VFK387F,24,595
est12=AFH772F,26,602
est13=CHG846F,27,604
est14=AFK883F,28,603
est15=VFI434F,28,602
est16=AFD417F,29,589
est17=CFH851F,29,589
est18=VFM203F,29,707
est19=SLI621F,31,209
est20=AFG187F,35,598
est21=VFK364F,35,624
est22=VSI524F,35,547
est23=VFO568F,47,591
est24=VFO820F,47,564
est25=VFJ767F,60,604
est26=VFJ626F,81,605
est27=VHF692F,87,191
est28=AFB636F,365,991
est29=VFO568Z,831,1601
est30=AFJ412Z,851,1606
est31=CHG846Z,851,1600
est32=VFI434Z,851,1615
est33=VFI641Z,852,1602
est34=VFK364Z,902,1601
est35=AFE158Z,933,1620
est36=AFH772Z,934,1606
est37=VFM203Z,936,1615
est38=SFL448Z,937,1601
est39=VFK387Z,937,1588
est40=AFD417Z,939,1627
est41=VFD523Z,1029,1614
est42=VFE328Z,1047,1603
est43=VFJ767Z,1081,1701
est44=SLI621Z,1188,1629
est45=AHN667Z,1199,1913
est46=VFJ626Z,1219,1922
est47=AFK883Z,1260,1943
est48=AFB636Z,1280,1926
est49=VFK565Z,1282,1926
est50=SFE426Z,1283,1755
est51=CFH851Z,1329,1919
est52=FC-AA22E,1400,1975
est53=VSB221E,1520,1997
est54=AFG187Z,1528,1927
est55=CFH851H,1532,2532
est56=VSI524Z,1533,1768
est57=VFM750Z,1608,1924
est58=VHF692Z,1665,1922
Translated Amino Acid sequence
hcwptgnliylyltfyhtiqtflysfl*f*RKNKKMSAVDDQQNADKQVEQWKIKKLIKN
LEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGTASNIKSRVNRLSVLGAITSAQQRLK
LYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFKPINTSLYLCDNKFHTAPLGELLESD
EKFGFIVVDGNGALFGLLCGSTRTVLHKITVDLPKKHGRGGQSALRFARLRMEKRHNYVR
KVSELATQFYVTNDKPNVSGLILAGSADFKTELGTSDMFDQRLREKIIKIVDVSYGGDNG
FNQAIELSGEVLSSVKFIQEKKLISQFFEEIAQDTGKYCFGIADTLKALDLGAAHTLIVW
ESLETIRYLLRLPTGEEKVIFLNKDQNKDASVFKDKESGLDYEIVEEMPIVEWFANNYKN
FGASLEFVTNKSQEGSQFCKGFGGLGGLLRYQVDFAQLNDFDNPDENEYDDSDSDF*pie
ktsnrngtglvsstfkvapsfstiqkqqqqqqkslspkttltttittttttttiikekyk
nekntttttsntnkplqinsinnknglinesssssstlstletnvnsselfvsceklsnn
nyhhqneddivvsliqtervniqkklga*til*k*ik*kkwlcfvvschlkkkkkkkkkk
kkkkkkkkkkkkkkkkgqqkslspkttltttittttttttiikekyknekntttttsntn
kplqinsinnknglinesssssstlstletnvnsselfvsceklsnnnyhhqneddmlfh
*fklke*tykrs*glkpfsknklnkkngfvlslvvt*kkkkkkkkkkkkkkkkkkkkkkk
kkkg


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgnliylyltfyhtiqtflysfl*f*RKNKKMSAVDDQQNADKQVEQWKIKKLIKN
LEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGTASNIKSRVNRLSVLGAITSAQQRLK
LYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFKPINTSLYLCDNKFHTAPLGELLESD
EKFGFIVVDGNGALFGLLCGSTRTVLHKITVDLPKKHGRGGQSALRFARLRMEKRHNYVR
KVSELATQFYVTNDKPNVSGLILAGSADFKTELGTSDMFDQRLREKIIKIVDVSYGGDNG
FNQAIELSGEVLSSVKFIQEKKLISQFFEEIAQDTGKYCFGIADTLKALDLGAAHTLIVW
ESLETIRYLLRLPTGEEKVIFLNKDQNKDASVFKDKESGLDYEIVEEMPIVEWFANNYKN
FGASLEFVTNKSQEGSQFCKGFGGLGGLLRYQVDFAQLNDFDNPDENEYDDSDSDF*pie
ktsnrngtglvsstfkvapsfstiqkqqqqqqkslspkttltttittttttttiikekyk
nekntttttsntnkplqinsinnknglinesssssstlstletnvnsselfvsceklsnn
nyhhqneddivvsliqtervniqkklga*til*k*ik*kkwlcfvvschlkkkkkkkkkk
kkkkkkkkkkkkkkkkgqqkslspkttltttittttttttiikekyknekntttttsntn
kplqinsinnknglinesssssstlstletnvnsselfvsceklsnnnyhhqneddmlfh
*fklke*tykrs*glkpfsknklnkkngfvlslvvt*kkkkkkkkkkkkkkkkkkkkkkk
kkkg


Frame B:
tvgllei*fifillftiqfklfcivfynfkekikrcqllminkmqisklnngkskn*lki
wklpevmvhl*fh*lfvqviklqklikc*qksmvqhqilnqelidyqywvqlhqhnkd*s
yilkyqimv*lfiavqwlqmkvkrnqyvsilnhsnqsiphsiyviinsiqhhwvny*rvm
kslvsss*mvmvhslvyyvvqpeqfsirlq*isqrntvvvvnlpfvslvfvwknvtitfv
kfqswppnstspminqtfqv*f*lvlpisrlnlvpliclinvfvkrslkssmfpmvvimv
siklsnylvkfsqvsnsfkrrn*shnslkrshktlvsivsvslil*klwtwvlltl*sfg
nhwkqfvtyfvyqlvkrkssf*ikikikmplslriknlvltmksskkcqslsgspittkt
lvplsnssptnlkkvhnsvkvlvvwvvysvik*islnsmisiiqmrmntmiviqtfdqlk
kpatemvlvwsppllrlplpslpfknnnnnnknhfhqkqh*qqllqqlqqqqq*lkkntk
mkkiqlqlhliqtnhyksiplitktv*smnhhhhhqlfqhlkqm*ipvnylyrvkscptt
iiiikmkmillfh*fklke*tykrs*glkpfsknklnkkngfvlslvvt*kkkkkkkkkk
kkkkkkkkkkkkkkkkgnknhfhqkqh*qqllqqlqqqqq*lkkntkmkkiqlqlhliqt
nhyksiplitktv*smnhhhhhqlfqhlkqm*ipvnylyrvkscpttiiiikmkmiccfi
dsn*kskhtkevrglnhslkin*ikkmalfcr*lslkkkkkkkkkkkkkkkkkkkkkkkk
kkr


Frame C:
llaywkfdlslsyflpynsnffv*ffiilkkk*kdvsc**stkcr*as*tmenqkin*kf
gscqr*wyiydfinyssr*sncks**nvsrrvwysiky*iks**iisigcnyisttkikv
iy*str*wfsyllryngyr*r*retstyry*tiqtnqyltlfm***ipystig*iire**
kvwfhrrrw*wctlwfimwfnqnssp*dysrspketrswwsicpsfrsssygktsqlrs*
sfrvghpilrhq**tkrfrfdfswfcrfqd*twyl*yv*stss*kdh*nrrcflww**wf
qssyriiw*sslkcqihsreeinltil*rdrtrhw*vlfryr*yfesfglgccshfnrlg
iignnslltsftnw*reshlfk*rsk*rclcl*g*riws*l*nrrrnanr*vvrq*lqkl
wclsrirhqqisrrftil*rfwwfgwftplssrfrstq*fr*sr*e*ir***frlltn*k
nqqqkwywfgllhf*gcpfllyhskttttttkitftknninnnyynnynnnnnn*rkiqk
*kkynynyi*ykqtitnqfh**qkrfnq*iiiiiinsfnt*nkckfq*iiciv*kvvqqq
lsssk*r*yccfidsn*kskhtkevrglnhslkin*ikkmalfcr*lslkkkkkkkkkkk
kkkkkkkkkkkkkkkratkitftknninnnyynnynnnnnn*rkiqk*kkynynyi*ykq
titnqfh**qkrfnq*iiiiiinsfnt*nkckfq*iiciv*kvvqqqlsssk*r*yvvsl
iqtervniqkklga*til*k*ik*kkwlcfvvschlkkkkkkkkkkkkkkkkkkkkkkkk
kkg


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U14948-1 (Contig-U14948-1Q)
/CSM_Contig/Contig-U14948-1Q.Seq.d
(2532 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14948-1 (Contig-U14948-1Q) /CSM_Contig/Conti... 2637 0.0
Contig-U16380-1 (Contig-U16380-1Q) /CSM_Contig/Conti... 46 3e-04
Contig-U13924-1 (Contig-U13924-1Q) /CSM_Contig/Conti... 44 0.001
Contig-U13859-1 (Contig-U13859-1Q) /CSM_Contig/Conti... 44 0.001
Contig-U09371-1 (Contig-U09371-1Q) /CSM_Contig/Conti... 44 0.001
Contig-U16052-1 (Contig-U16052-1Q) /CSM_Contig/Conti... 40 0.016
Contig-U16470-1 (Contig-U16470-1Q) /CSM_Contig/Conti... 38 0.065
Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Conti... 38 0.065
Contig-U14997-1 (Contig-U14997-1Q) /CSM_Contig/Conti... 36 0.26
Contig-U14927-1 (Contig-U14927-1Q) /CSM_Contig/Conti... 36 0.26

>Contig-U14948-1 (Contig-U14948-1Q) /CSM_Contig/Contig-U14948-1Q.Seq.d
Length = 2532

Score = 2637 bits (1330), Expect = 0.0
Identities = 1330/1330 (100%)
Strand = Plus / Plus


Query: 180 tttggaagctgccagaggtaatggtacatctatgatttcattaattattcgtccaggtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tttggaagctgccagaggtaatggtacatctatgatttcattaattattcgtccaggtga 239


Query: 240 tcaaattgcaaaagttaataaaatgttagcagaagagtatggtacagcatcaaatattaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcaaattgcaaaagttaataaaatgttagcagaagagtatggtacagcatcaaatattaa 299


Query: 300 atcaagagttaatagattatcagtattgggtgcaattacatcagcacaacaaagattaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atcaagagttaatagattatcagtattgggtgcaattacatcagcacaacaaagattaaa 359


Query: 360 gttatatactaaagtaccagataatggtttagttatttattgcggtacaatggttacaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gttatatactaaagtaccagataatggtttagttatttattgcggtacaatggttacaga 419


Query: 420 tgaaggtaaagagaaaccagtacgtatcgatattgaaccattcaaaccaatcaatacctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgaaggtaaagagaaaccagtacgtatcgatattgaaccattcaaaccaatcaatacctc 479


Query: 480 actctatttatgtgataataaattccatacagcaccattgggtgaattattagagagtga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 actctatttatgtgataataaattccatacagcaccattgggtgaattattagagagtga 539


Query: 540 tgaaaagtttggtttcatcgtcgtagatggtaatggtgcactctttggtttattatgtgg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgaaaagtttggtttcatcgtcgtagatggtaatggtgcactctttggtttattatgtgg 599


Query: 600 ttcaaccagaacagttctccataagattacagtagatctcccaaagaaacacggtcgtgg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttcaaccagaacagttctccataagattacagtagatctcccaaagaaacacggtcgtgg 659


Query: 660 tggtcaatctgcccttcgtttcgctcgtcttcgtatggaaaaacgtcacaattacgttcg 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tggtcaatctgcccttcgtttcgctcgtcttcgtatggaaaaacgtcacaattacgttcg 719


Query: 720 taaagtttcagagttggccacccaattctacgtcaccaatgataaaccaaacgtttcagg 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 taaagtttcagagttggccacccaattctacgtcaccaatgataaaccaaacgtttcagg 779


Query: 780 tttgattttagctggttctgccgatttcaagactgaacttggtacctctgatatgtttga 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tttgattttagctggttctgccgatttcaagactgaacttggtacctctgatatgtttga 839


Query: 840 tcaacgtcttcgtgaaaagatcattaaaatcgtcgatgtttcctatggtggtgataatgg 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tcaacgtcttcgtgaaaagatcattaaaatcgtcgatgtttcctatggtggtgataatgg 899


Query: 900 tttcaatcaagctatcgaattatctggtgaagttctctcaagtgtcaaattcattcaaga 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tttcaatcaagctatcgaattatctggtgaagttctctcaagtgtcaaattcattcaaga 959


Query: 960 gaagaaattaatctcacaattctttgaagagatcgcacaagacactggtaagtattgttt 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 gaagaaattaatctcacaattctttgaagagatcgcacaagacactggtaagtattgttt 1019


Query: 1020 cggtatcgctgatactttgaaagctttggacttgggtgctgctcacactttaatcgtttg 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 cggtatcgctgatactttgaaagctttggacttgggtgctgctcacactttaatcgtttg 1079


Query: 1080 ggaatcattggaaacaattcgttacttacttcgtttaccaactggtgaagagaaagtcat 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 ggaatcattggaaacaattcgttacttacttcgtttaccaactggtgaagagaaagtcat 1139


Query: 1140 ctttttaaataaagatcaaaataaagatgcctctgtctttaaggataaagaatctggtct 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 ctttttaaataaagatcaaaataaagatgcctctgtctttaaggataaagaatctggtct 1199


Query: 1200 tgactatgaaatcgtcgaagaaatgccaatcgttgagtggttcgccaataactacaaaaa 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 tgactatgaaatcgtcgaagaaatgccaatcgttgagtggttcgccaataactacaaaaa 1259


Query: 1260 ctttggtgcctctctcgaattcgtcaccaacaaatctcaagaaggttcacaattctgtaa 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 ctttggtgcctctctcgaattcgtcaccaacaaatctcaagaaggttcacaattctgtaa 1319


Query: 1320 aggttttggtggtttgggtggtttactccgttatcaagtagatttcgctcaactcaatga 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 aggttttggtggtttgggtggtttactccgttatcaagtagatttcgctcaactcaatga 1379


Query: 1380 tttcgataatccagatgagaatgaatacgatgatagtgattcagacttttgaccaattga 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 tttcgataatccagatgagaatgaatacgatgatagtgattcagacttttgaccaattga 1439


Query: 1440 aaaaaccagcaacagaaatggtactggtttggtctcctccacttttaaggttgccccttc 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 aaaaaccagcaacagaaatggtactggtttggtctcctccacttttaaggttgccccttc 1499


Query: 1500 cttctctacc 1509
||||||||||
Sbjct: 1500 cttctctacc 1509


Score = 333 bits (168), Expect = 8e-91
Identities = 168/168 (100%)
Strand = Plus / Plus


Query: 1729 actctttcaacacttgaaacaaatgtaaattccagtgaattatttgtatcgtgtgaaaag 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 actctttcaacacttgaaacaaatgtaaattccagtgaattatttgtatcgtgtgaaaag 1788


Query: 1789 ttgtccaacaacaattatcatcatcaaaatgaagatgatattgttgtttcattgattcaa 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 ttgtccaacaacaattatcatcatcaaaatgaagatgatattgttgtttcattgattcaa 1848


Query: 1849 actgaaagagtaaacatacaaaagaagttaggggcttaaaccattctc 1896
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 actgaaagagtaaacatacaaaagaagttaggggcttaaaccattctc 1896


Score = 331 bits (167), Expect = 3e-90
Identities = 167/167 (100%)
Strand = Plus / Plus


Query: 2230 actctttcaacacttgaaacaaatgtaaattccagtgaattatttgtatcgtgtgaaaag 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2230 actctttcaacacttgaaacaaatgtaaattccagtgaattatttgtatcgtgtgaaaag 2289


Query: 2290 ttgtccaacaacaattatcatcatcaaaatgaagatgatatgttgtttcattgattcaaa 2349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2290 ttgtccaacaacaattatcatcatcaaaatgaagatgatatgttgtttcattgattcaaa 2349


Query: 2350 ctgaaagagtaaacatacaaaagaagttaggggcttaaaccattctc 2396
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2350 ctgaaagagtaaacatacaaaagaagttaggggcttaaaccattctc 2396


Score = 317 bits (160), Expect = 5e-86
Identities = 167/168 (99%), Gaps = 1/168 (0%)
Strand = Plus / Plus


Query: 2230 actctttcaacacttgaaacaaatgtaaattccagtgaattatttgtatcgtgtgaaaag 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 actctttcaacacttgaaacaaatgtaaattccagtgaattatttgtatcgtgtgaaaag 1788


Query: 2290 ttgtccaacaacaattatcatcatcaaaatgaagatgata-tgttgtttcattgattcaa 2348
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1789 ttgtccaacaacaattatcatcatcaaaatgaagatgatattgttgtttcattgattcaa 1848


Query: 2349 actgaaagagtaaacatacaaaagaagttaggggcttaaaccattctc 2396
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 actgaaagagtaaacatacaaaagaagttaggggcttaaaccattctc 1896


Score = 317 bits (160), Expect = 5e-86
Identities = 167/168 (99%), Gaps = 1/168 (0%)
Strand = Plus / Plus


Query: 1729 actctttcaacacttgaaacaaatgtaaattccagtgaattatttgtatcgtgtgaaaag 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2230 actctttcaacacttgaaacaaatgtaaattccagtgaattatttgtatcgtgtgaaaag 2289


Query: 1789 ttgtccaacaacaattatcatcatcaaaatgaagatgatattgttgtttcattgattcaa 1848
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2290 ttgtccaacaacaattatcatcatcaaaatgaagatgata-tgttgtttcattgattcaa 2348


Query: 1849 actgaaagagtaaacatacaaaagaagttaggggcttaaaccattctc 1896
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2349 actgaaagagtaaacatacaaaagaagttaggggcttaaaccattctc 2396


Score = 238 bits (120), Expect = 3e-62
Identities = 144/156 (92%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggaaatttgatttatctttatcttactttttaccatacaattcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggaaatttgatttatctttatcttactttttaccatacaattcaa 60


Query: 61 acttttttgtatagttttttataattttaaagnnnnnnnnnnnngatgtcagctgttgat 120
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61 acttttttgtatagttttttataattttaaagaaaaaataaaaagatgtcagctgttgat 120


Query: 121 gatcaacaaaatgcagataagcaagttgaacaatgg 156
||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatcaacaaaatgcagataagcaagttgaacaatgg 156


Score = 155 bits (78), Expect = 4e-37
Identities = 78/78 (100%)
Strand = Plus / Plus


Query: 2133 tacaactacaactacatctaatacaaacaaaccattacaaatcaattccattaataacaa 2192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 tacaactacaactacatctaatacaaacaaaccattacaaatcaattccattaataacaa 2192


Query: 2193 aaacggtttaatcaatga 2210
||||||||||||||||||
Sbjct: 2193 aaacggtttaatcaatga 2210


Score = 155 bits (78), Expect = 4e-37
Identities = 78/78 (100%)
Strand = Plus / Plus


Query: 2133 tacaactacaactacatctaatacaaacaaaccattacaaatcaattccattaataacaa 2192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 tacaactacaactacatctaatacaaacaaaccattacaaatcaattccattaataacaa 1691


Query: 2193 aaacggtttaatcaatga 2210
||||||||||||||||||
Sbjct: 1692 aaacggtttaatcaatga 1709


Score = 155 bits (78), Expect = 4e-37
Identities = 78/78 (100%)
Strand = Plus / Plus


Query: 1632 tacaactacaactacatctaatacaaacaaaccattacaaatcaattccattaataacaa 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 tacaactacaactacatctaatacaaacaaaccattacaaatcaattccattaataacaa 1691


Query: 1692 aaacggtttaatcaatga 1709
||||||||||||||||||
Sbjct: 1692 aaacggtttaatcaatga 1709


Score = 155 bits (78), Expect = 4e-37
Identities = 78/78 (100%)
Strand = Plus / Plus


Query: 1632 tacaactacaactacatctaatacaaacaaaccattacaaatcaattccattaataacaa 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 tacaactacaactacatctaatacaaacaaaccattacaaatcaattccattaataacaa 2192


Query: 1692 aaacggtttaatcaatga 1709
||||||||||||||||||
Sbjct: 2193 aaacggtttaatcaatga 2210


Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 1921 tggctttgttttgtcgttagttgtcactt 1949
|||||||||||||||||||||||||||||
Sbjct: 2421 tggctttgttttgtcgttagttgtcactt 2449


Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 1921 tggctttgttttgtcgttagttgtcactt 1949
|||||||||||||||||||||||||||||
Sbjct: 1921 tggctttgttttgtcgttagttgtcactt 1949


Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 2421 tggctttgttttgtcgttagttgtcactt 2449
|||||||||||||||||||||||||||||
Sbjct: 1921 tggctttgttttgtcgttagttgtcactt 1949


Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 2421 tggctttgttttgtcgttagttgtcactt 2449
|||||||||||||||||||||||||||||
Sbjct: 2421 tggctttgttttgtcgttagttgtcactt 2449


>Contig-U16380-1 (Contig-U16380-1Q) /CSM_Contig/Contig-U16380-1Q.Seq.d
Length = 1711

Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 2 actgttggcctactggaaatttgattt 28
|||||||||||||||| ||||||||||
Sbjct: 1 actgttggcctactgggaatttgattt 27


>Contig-U13924-1 (Contig-U13924-1Q) /CSM_Contig/Contig-U13924-1Q.Seq.d
Length = 1403

Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggaaatt 22
||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggaaatt 22


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,430
Number of Sequences: 8402
Number of extensions: 36430
Number of successful extensions: 4986
Number of sequences better than 10.0: 687
length of query: 2532
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2515
effective length of database: 7,932,708
effective search space: 19950760620
effective search space used: 19950760620
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 1. 6
Homology vs DNA
Query= Contig-U14948-1 (Contig-U14948-1Q) /CSM_Contig/Contig-U14948-1Q.Seq.d
(2532 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AF298834) Dictyostelium discoideum eukaryotic release facto... 2633 0.0 2
(BJ436255) Dictyostelium discoideum cDNA clone:ddv30g17, 3' ... 1344 0.0 1
(BJ431996) Dictyostelium discoideum cDNA clone:ddv17d10, 3' ... 1312 0.0 1
(BJ379605) Dictyostelium discoideum cDNA clone:ddc35l12, 3' ... 1312 0.0 1
(BJ344385) Dictyostelium discoideum cDNA clone:dda19h04, 3' ... 1304 0.0 1
(BJ433395) Dictyostelium discoideum cDNA clone:ddv21p15, 3' ... 1211 0.0 1
(BJ324009) Dictyostelium discoideum cDNA clone:dda4g10, 5' e... 1207 0.0 1
(BJ432281) Dictyostelium discoideum cDNA clone:ddv18a12, 3' ... 1176 0.0 2
(BJ342100) Dictyostelium discoideum cDNA clone:dda9c15, 3' e... 1150 0.0 1
(BJ343641) Dictyostelium discoideum cDNA clone:dda16p17, 3' ... 1148 0.0 1
(BJ434812) Dictyostelium discoideum cDNA clone:ddv25e02, 3' ... 1144 0.0 1
(BJ341517) Dictyostelium discoideum cDNA clone:dda7b06, 3' e... 1138 0.0 1
(BJ433453) Dictyostelium discoideum cDNA clone:ddv21n21, 3' ... 1134 0.0 1
(BJ401498) Dictyostelium discoideum cDNA clone:dds23p12, 3' ... 1055 0.0 2
(BJ416127) Dictyostelium discoideum cDNA clone:ddv25e02, 5' ... 1027 0.0 2
(BJ433031) Dictyostelium discoideum cDNA clone:ddv20f17, 3' ... 716 0.0 5
(BJ355889) Dictyostelium discoideum cDNA clone:dda58e18, 3' ... 622 0.0 5
(BJ430658) Dictyostelium discoideum cDNA clone:ddv8m05, 3' e... 959 0.0 1
(BJ415181) Dictyostelium discoideum cDNA clone:ddv21p15, 5' ... 876 0.0 2
(BJ432925) Dictyostelium discoideum cDNA clone:ddv20c08, 3' ... 583 0.0 5
(BJ416467) Dictyostelium discoideum cDNA clone:ddv26d13, 5' ... 846 0.0 2
(BJ324902) Dictyostelium discoideum cDNA clone:dda8j17, 5' e... 841 0.0 2
(BJ365446) Dictyostelium discoideum cDNA clone:ddc35l12, 5' ... 841 0.0 2
(BJ328069) Dictyostelium discoideum cDNA clone:dda22f22, 5' ... 839 0.0 2
(BJ330247) Dictyostelium discoideum cDNA clone:dda27j22, 5' ... 839 0.0 2
(BJ414836) Dictyostelium discoideum cDNA clone:ddv20f17, 5' ... 837 0.0 2
(BJ426702) Dictyostelium discoideum cDNA clone:ddv59n24, 5' ... 835 0.0 2
(BJ415408) Dictyostelium discoideum cDNA clone:ddv22a17, 5' ... 833 0.0 2
(BJ413884) Dictyostelium discoideum cDNA clone:ddv17d10, 5' ... 833 0.0 2
(BJ347694) Dictyostelium discoideum cDNA clone:dda27j22, 3' ... 581 0.0 4
(BJ412372) Dictyostelium discoideum cDNA clone:ddv8m05, 5' e... 831 0.0 2
(BJ326504) Dictyostelium discoideum cDNA clone:dda16p17, 5' ... 829 0.0 2
(BJ325336) Dictyostelium discoideum cDNA clone:dda13m21, 5' ... 829 0.0 2
(BJ414736) Dictyostelium discoideum cDNA clone:ddv20c08, 5' ... 839 0.0 2
(BJ415241) Dictyostelium discoideum cDNA clone:ddv21n21, 5' ... 819 0.0 2
(BJ430940) Dictyostelium discoideum cDNA clone:ddv9h07, 3' e... 898 0.0 1
(BJ337742) Dictyostelium discoideum cDNA clone:dda58e18, 5' ... 815 0.0 2
(BJ325067) Dictyostelium discoideum cDNA clone:dda9c15, 5' e... 811 0.0 2
(BJ324581) Dictyostelium discoideum cDNA clone:dda7b06, 5' e... 811 0.0 2
(BJ361284) Dictyostelium discoideum cDNA clone:ddc16f14, 5' ... 811 0.0 2
(BJ417425) Dictyostelium discoideum cDNA clone:ddv30g17, 5' ... 803 0.0 2
(BJ327086) Dictyostelium discoideum cDNA clone:dda19h04, 5' ... 500 0.0 4
(BJ390713) Dictyostelium discoideum cDNA clone:dds23p12, 5' ... 749 0.0 3
(BJ433637) Dictyostelium discoideum cDNA clone:ddv22a17, 3' ... 458 0.0 4
(BJ412642) Dictyostelium discoideum cDNA clone:ddv9h07, 5' e... 726 0.0 3
(BJ417284) Dictyostelium discoideum cDNA clone:ddv30h06, 5' ... 743 0.0 2
(BJ340899) Dictyostelium discoideum cDNA clone:dda4g10, 3' e... 434 0.0 4
(AU268826) Dictyostelium discoideum vegetative cDNA clone:VS... 726 0.0 2
(BJ343354) Dictyostelium discoideum cDNA clone:dda22f22, 3' ... 394 0.0 4
(C23641) Dictyostelium discoideum gamete cDNA, clone FC-AA22. 333 0.0 4
(AU053423) Dictyostelium discoideum slug cDNA, clone SLI621. 646 0.0 1
(BJ400217) Dictyostelium discoideum cDNA clone:dds9d08, 3' e... 458 e-166 3
(AU261900) Dictyostelium discoideum vegetative cDNA clone:VS... 333 e-134 3
(BJ342423) Dictyostelium discoideum cDNA clone:dda13m21, 3' ... 333 e-123 2
(BJ374860) Dictyostelium discoideum cDNA clone:ddc16f14, 3' ... 315 e-122 4
(BJ435241) Dictyostelium discoideum cDNA clone:ddv26d13, 3' ... 333 e-109 2
(BJ440161) Dictyostelium discoideum cDNA clone:ddv42g24, 3' ... 172 7e-92 3
(DY886248) CeleSEQ1823 Cunninghamella elegans pBluescript (E... 98 1e-51 8
(EH013212) USDA-FP_186035 Lysiphlebus testaceipes adult whol... 129 1e-50 5
(EC388150) A02_A02gm2a3_pDNRf_490732 Myzus persicae, line G0... 88 2e-45 7
(FC814869) Sr_pAMT7_01h05_T7 S. ratti mixed stage pAMP Stron... 56 4e-40 8
(FF312397) 279384172 Pea aphid whole body normalized full le... 86 5e-40 6
(FC819491) Sr_pAMT7_014p21_T7 S. ratti mixed stage pAMP Stro... 56 1e-38 7
(FC820288) Sr_pAMT7_017e09_T7 S. ratti mixed stage pAMP Stro... 56 2e-38 7
(DY886443) CeleSEQ2104 Cunninghamella elegans pBluescript (E... 98 1e-36 7
(FE250005) CAPH2605.fwd CAPH Naegleria gruberi amoeba stage ... 62 3e-36 7
(DY888644) CeleSEQ5819 Cunninghamella elegans pBluescript (E... 98 7e-36 7
(FC819324) Sr_pAMT7_014h22_T7 S. ratti mixed stage pAMP Stro... 52 2e-35 8
(FE244181) CAPG8051.fwd CAPG Naegleria gruberi amoeba stage ... 62 8e-34 6
(FE236564) CAPG3951.fwd CAPG Naegleria gruberi amoeba stage ... 62 1e-33 6
(EH014500) USDA-FP_187194 Lysiphlebus testaceipes adult whol... 129 1e-33 3
(FC816485) Sr_pAMT7_06e03_T7 S. ratti mixed stage pAMP Stron... 54 2e-33 6
(FE242403) CAPG7151.fwd CAPG Naegleria gruberi amoeba stage ... 62 3e-32 5
(FE237870) CAPG4579.fwd CAPG Naegleria gruberi amoeba stage ... 62 6e-32 6
(BU172713) AGENCOURT_7966448 NIH_MGC_72 Homo sapiens cDNA cl... 88 2e-31 5
(EC325624) GUTF089550C7 POSSUM_01-POSSUM-GUT-2KB Trichosurus... 58 5e-31 7
(BT008184) Synthetic construct Homo sapiens eukaryotic trans... 88 7e-31 5
(AY892822) Synthetic construct Homo sapiens clone FLH024295.... 88 7e-31 5
(AY892821) Synthetic construct Homo sapiens clone FLH024294.... 88 7e-31 5
(AY890351) Synthetic construct Homo sapiens clone FLH024299.... 88 7e-31 5
(AY890350) Synthetic construct Homo sapiens clone FLH024298.... 88 7e-31 5
(BT007374) Homo sapiens eukaryotic translation termination f... 88 7e-31 5
(DQ893890) Synthetic construct Homo sapiens clone IMAGE:1000... 88 8e-31 5
(DQ890706) Synthetic construct clone IMAGE:100003336; FLH165... 88 8e-31 5
(AY401898) Homo sapiens ETF1 gene, VIRTUAL TRANSCRIPT, parti... 88 9e-31 5
(BD451332) Human Cancer Associated Gene Sequences and Polype... 88 1e-30 5
(CO648721) ILLUMIGEN_MCQ_42186 Katze_MMPB2 Macaca mulatta cD... 88 1e-30 4
(AK312510) Homo sapiens cDNA, FLJ92875, Homo sapiens eukaryo... 88 1e-30 5
(DQ331844) Synthetic construct Saccharomyces cerevisiae clon... 54 1e-30 7
(DJ204938) Method for identification of useful proteins deri... 54 1e-30 7
(CS402968) Sequence 58 from Patent WO2006082059. 54 1e-30 7
(CS380640) Sequence 21 from Patent WO2006082058. 54 1e-30 7
(AX830556) Sequence 1276 from Patent WO03072602. 54 1e-30 7
(AX819526) Sequence 1276 from Patent EP1338608. 54 1e-30 7
(AX595428) Sequence 1082 from Patent EP1258494. 54 1e-30 7
(U90176) Human eukaryotic release factor 1 eRF1 mRNA, comple... 88 2e-30 5
(BC088358) Homo sapiens eukaryotic translation termination f... 88 3e-30 5
(CK253154) EST736791 potato callus cDNA library, normalized ... 60 3e-30 5
(AY401899) Pan troglodytes ETF1 gene, VIRTUAL TRANSCRIPT, pa... 88 3e-30 5
(BP293568) Homo sapiens cDNA clone: LNG12751, Sugano cDNA li... 88 3e-30 4

>(AF298834) Dictyostelium discoideum eukaryotic release factor 1
(erf1) mRNA, complete cds.
Length = 1598

Score = 2633 bits (1328), Expect(2) = 0.0
Identities = 1331/1332 (99%)
Strand = Plus / Plus


Query: 181 ttggaagctgccagaggtaatggtacatctatgatttcattaattattcgtccaggtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttggaagctgccagaggtaatggtacatctatgatttcattaattattcgtccaggtgat 210


Query: 241 caaattgcaaaagttaataaaatgttagcagaagagtatggtacagcatcaaatattaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 caaattgcaaaagttaataaaatgttagcagaagagtatggtacagcatcaaatattaaa 270


Query: 301 tcaagagttaatagattatcagtattgggtgcaattacatcagcacaacaaagattaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcaagagttaatagattatcagtattgggtgcaattacatcagcacaacaaagattaaag 330


Query: 361 ttatatactaaagtaccagataatggtttagttatttattgcggtacaatggttacagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttatatactaaagtaccagataatggtttagttatttattgcggtacaatggttacagat 390


Query: 421 gaaggtaaagagaaaccagtacgtatcgatattgaaccattcaaaccaatcaatacctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaaggtaaagagaaaccagtacgtatcgatattgaaccattcaaaccaatcaatacctca 450


Query: 481 ctctatttatgtgataataaattccatacagcaccattgggtgaattattagagagtgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctctatttatgtgataataaattccatacagcaccattgggtgaattattagagagtgat 510


Query: 541 gaaaagtttggtttcatcgtcgtagatggtaatggtgcactctttggtttattatgtggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaaaagtttggtttcatcgtcgtagatggtaatggtgcactctttggtttattatgtggt 570


Query: 601 tcaaccagaacagttctccataagattacagtagatctcccaaagaaacacggtcgtggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcaaccagaacagttctccataagattacagtagatctcccaaagaaacacggtcgtggt 630


Query: 661 ggtcaatctgcccttcgtttcgctcgtcttcgtatggaaaaacgtcacaattacgttcgt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggtcaatctgcccttcgtttcgctcgtcttcgtatggaaaaacgtcacaattacgttcgt 690


Query: 721 aaagtttcagagttggccacccaattctacgtcaccaatgataaaccaaacgtttcaggt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaagtttcagagttggccacccaattctacgtcaccaatgataaaccaaacgtttcaggt 750


Query: 781 ttgattttagctggttctgccgatttcaagactgaacttggtacctctgatatgtttgat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ttgattttagctggttctgccgatttcaagactgaacttggtacctctgatatgtttgat 810


Query: 841 caacgtcttcgtgaaaagatcattaaaatcgtcgatgtttcctatggtggtgataatggt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 caacgtcttcgtgaaaagatcattaaaatcgtcgatgtttcctatggtggtgataatggt 870


Query: 901 ttcaatcaagctatcgaattatctggtgaagttctctcaagtgtcaaattcattcaagag 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ttcaatcaagctatcgaattatctggtgaagttctctcaagtgtcaaattcattcaagag 930


Query: 961 aagaaattaatctcacaattctttgaagagatcgcacaagacactggtaagtattgtttc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 aagaaattaatctcacaattctttgaagagatcgcacaagacactggtaagtattgtttc 990


Query: 1021 ggtatcgctgatactttgaaagctttggacttgggtgctgctcacactttaatcgtttgg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 ggtatcgctgatactttgaaagctttggacttgggtgctgctcacactttaatcgtttgg 1050


Query: 1081 gaatcattggaaacaattcgttacttacttcgtttaccaactggtgaagagaaagtcatc 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1051 gaatcattggaaacaattcgttactttcttcgtttaccaactggtgaagagaaagtcatc 1110


Query: 1141 tttttaaataaagatcaaaataaagatgcctctgtctttaaggataaagaatctggtctt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 tttttaaataaagatcaaaataaagatgcctctgtctttaaggataaagaatctggtctt 1170


Query: 1201 gactatgaaatcgtcgaagaaatgccaatcgttgagtggttcgccaataactacaaaaac 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 gactatgaaatcgtcgaagaaatgccaatcgttgagtggttcgccaataactacaaaaac 1230


Query: 1261 tttggtgcctctctcgaattcgtcaccaacaaatctcaagaaggttcacaattctgtaaa 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 tttggtgcctctctcgaattcgtcaccaacaaatctcaagaaggttcacaattctgtaaa 1290


Query: 1321 ggttttggtggtttgggtggtttactccgttatcaagtagatttcgctcaactcaatgat 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 ggttttggtggtttgggtggtttactccgttatcaagtagatttcgctcaactcaatgat 1350


Query: 1381 ttcgataatccagatgagaatgaatacgatgatagtgattcagacttttgaccaattgaa 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 ttcgataatccagatgagaatgaatacgatgatagtgattcagacttttgaccaattgaa 1410


Query: 1441 aaaaccagcaacagaaatggtactggtttggtctcctccacttttaaggttgccccttcc 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 aaaaccagcaacagaaatggtactggtttggtctcctccacttttaaggttgccccttcc 1470


Query: 1501 ttctctaccatt 1512
||||||||||||
Sbjct: 1471 ttctctaccatt 1482

Score = 99.6 bits (50), Expect(2) = 0.0
Identities = 51/52 (98%)
Strand = Plus / Plus


Query: 105 gatgtcagctgttgatgatcaacaaaatgcagataagcaagttgaacaatgg 156
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gatgtcagckgttgatgatcaacaaaatgcagataagcaagttgaacaatgg 126

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,155,215,478
Number of extensions: 122885575
Number of successful extensions: 9287189
Number of sequences better than 10.0: 2591
Length of query: 2532
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 2507
Effective length of database: 97,216,030,006
Effective search space: 243720587225042
Effective search space used: 243720587225042
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.13
Homology vs Protein
Query= Contig-U14948-1 (Contig-U14948-1Q) /CSM_Contig/Contig-U14948-1Q.Seq.d
(2532 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AF298834_1(AF298834|pid:none) Dictyostelium discoideum eukaryoti... 854 0.0
BC013717_1(BC013717|pid:none) Mus musculus eukaryotic translatio... 612 e-173
(P62495) RecName: Full=Eukaryotic peptide chain release factor s... 611 e-173
BT074577_1(BT074577|pid:none) Osmerus mordax clone omor-eva-515-... 610 e-173
(P62498) RecName: Full=Eukaryotic peptide chain release factor s... 609 e-172
(Q9VPH7) RecName: Full=Eukaryotic peptide chain release factor s... 603 e-170
(P35614) RecName: Full=Eukaryotic peptide chain release factor s... 599 e-169
DQ241835_1(DQ241835|pid:none) Solanum tuberosum clone 180C08 euk... 599 e-169
BT077951_1(BT077951|pid:none) Lepeophtheirus salmonis Pacific fo... 598 e-169
DQ311356_1(DQ311356|pid:none) Bombyx mori eukaryotic translation... 597 e-169
AC136505_15(AC136505|pid:none) Medicago truncatula clone mth2-24... 592 e-167
AM468837_2(AM468837|pid:none) Vitis vinifera contig VV78X073380.... 592 e-167
FN314157_1(FN314157|pid:none) Schistosoma japonicum isolate Anhu... 591 e-167
EF677820_1(EF677820|pid:none) Picea sitchensis clone WS02775_K03... 590 e-167
AP007150_584(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 590 e-167
AF451327_1(AF451327|pid:none) Aspergillus nidulans eukaryotic po... 589 e-166
CR382123_484(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 588 e-166
CU928171_667(CU928171|pid:none) Kluyveromyces thermotolerans str... 587 e-166
AB052893_1(AB052893|pid:none) Pneumocystis carinii mRNA for euka... 586 e-165
(O16520) RecName: Full=Eukaryotic peptide chain release factor s... 584 e-165
FN357502_4(FN357502|pid:none) Schistosoma mansoni genome sequenc... 582 e-164
AP003269_32(AP003269|pid:none) Oryza sativa Japonica Group genom... 582 e-164
AF016452_10(AF016452|pid:none) Caenorhabditis elegans cosmid T05... 580 e-164
AC135505_2(AC135505|pid:none) Medicago truncatula clone mth2-24j... 576 e-162
CR382135_224(CR382135|pid:none) Debaryomyces hansenii strain CBS... 576 e-162
CU928174_245(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 576 e-162
(O59948) RecName: Full=Eukaryotic peptide chain release factor s... 575 e-162
(Q39097) RecName: Full=Eukaryotic peptide chain release factor s... 575 e-162
AK302364_1(AK302364|pid:none) Homo sapiens cDNA FLJ56175 complet... 573 e-161
AY050665_1(AY050665|pid:none) Neurospora crassa eukaryotic relea... 573 e-161
AY050462_1(AY050462|pid:none) Arabidopsis thaliana AT5g47880/MCA... 572 e-161
CR380958_291(CR380958|pid:none) Candida glabrata strain CBS138 c... 572 e-161
AK316895_1(AK316895|pid:none) Arabidopsis thaliana AT5G47880 mRN... 571 e-161
FM992689_462(FM992689|pid:none) Candida dubliniensis CD36 chromo... 569 e-160
AY892821_1(AY892821|pid:none) Synthetic construct Homo sapiens c... 565 e-159
AC108874_2(AC108874|pid:none) Oryza sativa (japonica cultivar-gr... 565 e-159
CR940348_211(CR940348|pid:none) Theileria annulata strain Ankara... 558 e-157
EU955880_1(EU955880|pid:none) Zea mays clone 1549959 eukaryotic ... 557 e-157
S46014(S46014;S46012;S39109;A23642;S45532;S68105) omnipotent sup... 553 e-155
(P12385) RecName: Full=Eukaryotic peptide chain release factor s... 550 e-155
AE016818_374(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 550 e-154
A71612(A71612) translation releasing factor eRF-1 PFB0550w - mal... 545 e-153
AK152428_1(AK152428|pid:none) Mus musculus bone marrow macrophag... 545 e-153
AM910986_81(AM910986|pid:none) Plasmodium knowlesi strain H chro... 542 e-152
AE017343_564(AE017343|pid:none) Cryptococcus neoformans var. neo... 532 e-149
CR954205_241(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 518 e-145
FN357502_5(FN357502|pid:none) Schistosoma mansoni genome sequenc... 513 e-143
M75715_1(M75715|pid:none) Human TB3-1 mRNA, complete cds. 513 e-143
AF298832_1(AF298832|pid:none) Euplotes aediculatus eukaryotic re... 504 e-141
AF245454_1(AF245454|pid:none) Euplotes octocarinatus peptide cha... 498 e-139
AJ291710_1(AJ291710|pid:none) Blepharisma japonicum partial eRF1... 492 e-137
AY517527_1(AY517527|pid:none) Nyctotherus ovalis eukaryotic rele... 491 e-137
(Q9BMM3) RecName: Full=Eukaryotic peptide chain release factor s... 487 e-135
AY517525_1(AY517525|pid:none) Eschaneustyla sp. HL-2004 eukaryot... 483 e-134
AY517522_1(AY517522|pid:none) Urostyla sp. HL-2004 eukaryotic re... 479 e-133
AY517521_1(AY517521|pid:none) Uroleptus sp. WJC-2003 eukaryotic ... 474 e-132
(Q9BMM1) RecName: Full=Eukaryotic peptide chain release factor s... 473 e-131
AY517520_1(AY517520|pid:none) Paraurostyla weissei eukaryotic re... 470 e-130
AY517523_1(AY517523|pid:none) Holosticha sp. HL-2004 eukaryotic ... 470 e-130
AY116146_1(AY116146|pid:none) Stichotrichida sp. Alaska isolate ... 465 e-129
D87691_1(D87691|pid:none) Mus musculus mRNA for eRF1, partial cds. 458 e-127
BT044018_1(BT044018|pid:none) Salmo salar clone HM5_1032 eukaryo... 456 e-126
(Q9NAX8) RecName: Full=Eukaryotic peptide chain release factor s... 453 e-125
(Q5CD96) RecName: Full=Eukaryotic peptide chain release factor s... 453 e-125
AY116151_1(AY116151|pid:none) Tetmemena pustulata macronuclear E... 451 e-125
AM502245_123(AM502245|pid:none) Leishmania infantum chromosome 27. 438 e-121
AY050664_1(AY050664|pid:none) Aspergillus nidulans eukaryotic re... 433 e-119
(Q9U8U5) RecName: Full=Eukaryotic peptide chain release factor s... 431 e-119
AM494964_185(AM494964|pid:none) Leishmania braziliensis chromoso... 431 e-119
AY050667_1(AY050667|pid:none) Trichomonas vaginalis eukaryotic r... 392 e-107
AF165818_120(AF165818|pid:none) Guillardia theta nucleomorph chr... 389 e-106
FJ863425_1(FJ863425|pid:none) Anopheles merus isolate MER_V2A eu... 307 1e-81
EF147852_1(EF147852|pid:none) Populus trichocarpa clone WS0125_H... 296 3e-78
AY116149_1(AY116149|pid:none) Oxytricha longa macronuclear ERF1 ... 268 9e-70
AB201308_31(AB201308|pid:none) Uncultured crenarchaeote 45-H-12 ... 246 2e-63
CP001398_693(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 241 1e-61
(Q5JGK6) RecName: Full=Peptide chain release factor subunit 1; A... 239 4e-61
GM017008_152(GM017008|pid:none) Sequence 1838 from Patent EP1923... 239 4e-61
(Q9V151) RecName: Full=Peptide chain release factor subunit 1; A... 236 4e-60
CP000505_515(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 234 9e-60
(O59264) RecName: Full=Peptide chain release factor subunit 1; A... 232 6e-59
(Q12V98) RecName: Full=Peptide chain release factor subunit 1; A... 214 1e-53
(Q9HKR2) RecName: Full=Peptide chain release factor subunit 1; A... 208 7e-52
EU016642_9(EU016642|pid:none) Uncultured Group I marine crenarch... 206 3e-51
CP000743_430(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 206 3e-51
(A5ULL8) RecName: Full=Peptide chain release factor subunit 1; A... 205 8e-51
(P58227) Peptide chain release factor subunit 1 (Translation ter... 204 1e-50
AC135505_3(AC135505|pid:none) Medicago truncatula clone mth2-24j... 201 8e-50
CP000477_349(CP000477|pid:none) Methanosaeta thermophila PT, com... 199 3e-49
(Q58239) RecName: Full=Peptide chain release factor subunit 1; A... 198 7e-49
(P61731) RecName: Full=Peptide chain release factor subunit 1; A... 198 9e-49
EF187288_1(EF187288|pid:none) Brassica juncea eukaryotic transla... 198 9e-49
(Q8TUM4) RecName: Full=Peptide chain release factor subunit 1-1;... 197 2e-48
CP000867_1522(CP000867|pid:none) Methanococcus maripaludis C6, c... 195 6e-48
(A6VG76) RecName: Full=Peptide chain release factor subunit 1; A... 195 8e-48
(A4FX39) RecName: Full=Peptide chain release factor subunit 1; A... 195 8e-48
CP001338_274(CP001338|pid:none) Candidatus Methanosphaerula palu... 194 1e-47
(O26964) RecName: Full=Peptide chain release factor subunit 1; A... 191 9e-47
(Q6KZ24) RecName: Full=Peptide chain release factor subunit 1; A... 185 6e-45
AM114193_2210(AM114193|pid:none) Uncultured methanogenic archaeo... 185 8e-45
CP000780_268(CP000780|pid:none) Candidatus Methanoregula boonei ... 184 1e-44
(Q2NEL3) RecName: Full=Peptide chain release factor subunit 1; A... 184 1e-44
CP000099_398(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 182 4e-44
CP000559_1495(CP000559|pid:none) Methanocorpusculum labreanum Z,... 180 3e-43
CP001365_169(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 179 3e-43
CP000816_1336(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, c... 177 2e-42
CR936257_135(CR936257|pid:none) Natronomonas pharaonis DSM 2160 ... 171 1e-40
AE017199_52(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, com... 171 1e-40
(B0R748) RecName: Full=Peptide chain release factor subunit 1; A... 170 2e-40
AE004437_1626(AE004437|pid:none) Halobacterium sp. NRC-1, comple... 170 2e-40
AK340391_1(AK340391|pid:none) Acyrthosiphon pisum ACYPI005557 mR... 169 5e-40
EU247131_1(EU247131|pid:none) Lycosa singoriensis clone LSsin46 ... 169 6e-40
CP000575_533(CP000575|pid:none) Staphylothermus marinus F1, comp... 163 3e-38
BA000023_535(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 157 1e-36
(Q9YAF1) RecName: Full=Peptide chain release factor subunit 1; A... 154 1e-35
CP001140_857(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 153 3e-35
CP000682_747(CP000682|pid:none) Metallosphaera sedula DSM 5348, ... 153 3e-35
(Q97W96) Peptide chain release factor subunit 1 (Translation ter... 151 1e-34
CP000852_258(CP000852|pid:none) Caldivirga maquilingensis IC-167... 150 2e-34
U40218_1(U40218|pid:none) Arabidopsis thaliana eukaryotic releas... 148 1e-33
(Q8ZU81) RecName: Full=Peptide chain release factor subunit 1; A... 147 1e-33
CP000504_297(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 145 5e-33
CP001014_1777(CP001014|pid:none) Thermoproteus neutrophilus V24S... 145 7e-33
DQ200864_1(DQ200864|pid:none) Sus scrofa eukaryotic translation ... 60 4e-07
X81624_1(X81624|pid:none) M.auratus mRNA for Cl1 protein (Cl1-1). 59 1e-06
CP001251_1494(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,... 47 0.003
CP001147_1406(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 42 0.14
CP001146_1384(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 40 0.55
(P47660) RecName: Full=UvrABC system protein A; Short=U... 40 0.55
CP000925_435(CP000925|pid:none) Synthetic Mycoplasma genitalium ... 40 0.55
(Q57638) RecName: Full=Protein pelota homolog; EC=3.1.-... 39 0.72
CP001365_2002(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 39 0.72
BX293980_899(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 39 1.2
CP000123_723(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 39 1.2
AE017263_59(AE017263|pid:none) Mesoplasma florum L1 complete gen... 39 1.2
EF583999_28(EF583999|pid:none) Uncultured haloarchaeon clone fos... 38 2.1
AM180088_2093(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 38 2.1
(A5UKW7) RecName: Full=Protein pelota homolog; EC=3.1.-... 37 2.7
CP000472_2996(CP000472|pid:none) Shewanella piezotolerans WP3, c... 37 3.6
U02172_1(U02172|pid:none) Mycoplasma genitalium random genomic c... 37 3.6
AM285304_37(AM285304|pid:none) Spiroplasma citri GII3-3X chromos... 37 3.6
(Q8EUL1) RecName: Full=UvrABC system protein A; Short=U... 37 3.6
CU928180_522(CU928180|pid:none) Kluyveromyces thermotolerans str... 37 3.6
CP000300_1087(CP000300|pid:none) Methanococcoides burtonii DSM 6... 37 4.6
(P62008) RecName: Full=50S ribosomal protein L7Ae; &(P62009) Re... 37 4.6
BA000001_1539(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 37 4.6
(Q8U160) RecName: Full=50S ribosomal protein L7Ae; 37 4.6
AJ248285_32(AJ248285|pid:none) Pyrococcus abyssi complete genome... 37 4.6
A69132(A69132) ribosomal protein L7a - Methanobacterium thermoau... 37 4.6
(O26355) RecName: Full=50S ribosomal protein L7Ae; 37 4.6
(Q8TZ98) RecName: Full=Protein pelota homolog; EC=3.1.-... 37 4.6
(Q6NRM7) RecName: Full=Charged multivesicular body protein 3; Al... 36 7.9
AE017261_1363(AE017261|pid:none) Picrophilus torridus DSM 9790, ... 36 7.9

>AF298834_1(AF298834|pid:none) Dictyostelium discoideum eukaryotic
release factor 1 (erf1) mRNA, complete cds.
Length = 441

Score = 854 bits (2207), Expect = 0.0
Identities = 431/441 (97%), Positives = 431/441 (97%)
Frame = +1

Query: 106 MSAVDDQQNADKQVEQWKIKKLIKNLEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGT 285
MSAVDDQQNADKQVEQWKIKKLIKNLEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGT
Sbjct: 1 MSAVDDQQNADKQVEQWKIKKLIKNLEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGT 60

Query: 286 ASNIKSRVNRLSVLGAITSAQQRLKLYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFK 465
ASNIKSRVNRLSVLGAITSAQQRLKLYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFK
Sbjct: 61 ASNIKSRVNRLSVLGAITSAQQRLKLYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFK 120

Query: 466 PINTSLYLCDNKFHTAPLGELLESDEKFGFIVVDGNGALFGLLCGSTRTVLHKITVDLPK 645
PINTSLYLCDNKFHTAPLGELLESDEKFGFIVVDGNGALFGLLCGSTRTVLHKITVDLPK
Sbjct: 121 PINTSLYLCDNKFHTAPLGELLESDEKFGFIVVDGNGALFGLLCGSTRTVLHKITVDLPK 180

Query: 646 KHGRGGQSALRFARLRMEKRHNYVRKVSELATQFYVTNDKPNVSGLILAGSADFKTELGT 825
KHGRGGQSALRFARLRMEKRHNYVRKVSELATQFYVTNDKPNVSGLILAGSADFKTELGT
Sbjct: 181 KHGRGGQSALRFARLRMEKRHNYVRKVSELATQFYVTNDKPNVSGLILAGSADFKTELGT 240

Query: 826 SDMFDQRLREKIIKIVDVSYGGDNGFNQAIELSGEVLSSVKFIQEKKLISQFFEEIAQDT 1005
SDMFDQRLREKIIKIVDVSYGGDNGFNQAIELSGEVLSSVKFIQEKKLISQFFEEIAQDT
Sbjct: 241 SDMFDQRLREKIIKIVDVSYGGDNGFNQAIELSGEVLSSVKFIQEKKLISQFFEEIAQDT 300

Query: 1006 GKYCFGIADTLKALDLGAAHTLIVWESLETIRYLLRLPTGEEKVIFLNKDQNKDASVFKD 1185
GKYCFGIADTLKALDLGAAHTLIVWESLETIRY LRLPTGEEKVIFLNKDQNKDASVFKD
Sbjct: 301 GKYCFGIADTLKALDLGAAHTLIVWESLETIRYFLRLPTGEEKVIFLNKDQNKDASVFKD 360

Query: 1186 KESGLDYEIVEEMPIVEWFANNYKNFGASLEFVTNKSQEGSQFCKXXXXXXXXXRYQVDF 1365
KESGLDYEIVEEMPIVEWFANNYKNFGASLEFVTNKSQEGSQFCK RYQVDF
Sbjct: 361 KESGLDYEIVEEMPIVEWFANNYKNFGASLEFVTNKSQEGSQFCKGFGGLGGLLRYQVDF 420

Query: 1366 AQLNDFDNPDENEYDDSDSDF 1428
AQLNDFDNPDENEYDDSDSDF
Sbjct: 421 AQLNDFDNPDENEYDDSDSDF 441

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,221,885,357
Number of extensions: 58531181
Number of successful extensions: 148974
Number of sequences better than 10.0: 153
Number of HSP's gapped: 148321
Number of HSP's successfully gapped: 153
Length of query: 844
Length of database: 1,051,180,864
Length adjustment: 137
Effective length of query: 707
Effective length of database: 607,772,281
Effective search space: 429695002667
Effective search space used: 429695002667
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.43 gvh: 0.31 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U14948-1 is nuc

VS (DIR, S) 2
VH (FL, L) 2
VF (FL, S) 13
AH (FL, L) 1
AF (FL, S) 8
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 1
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0