Contig-U14948-1 |
Contig ID |
Contig-U14948-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
2532 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
1731652 |
End point |
1729642 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
32 |
Number of EST |
58 |
Link to clone list |
U14948 |
List of clone(s) |
est1=AFJ412F,1,589 est2=AFD769F,17,604 est3=AHN667F,17,595 est4=VFK565F,17,602 est5=VFD523F,18,605 est6=VFE328F,18,571 est7=VFM750F,18,609 est8=VHO495F,18,601 est9=AFE158F,24,589 est10=SFL448F,24,583 est11=VFK387F,24,595 est12=AFH772F,26,602 est13=CHG846F,27,604 est14=AFK883F,28,603 est15=VFI434F,28,602 est16=AFD417F,29,589 est17=CFH851F,29,589 est18=VFM203F,29,707 est19=SLI621F,31,209 est20=AFG187F,35,598 est21=VFK364F,35,624 est22=VSI524F,35,547 est23=VFO568F,47,591 est24=VFO820F,47,564 est25=VFJ767F,60,604 est26=VFJ626F,81,605 est27=VHF692F,87,191 est28=AFB636F,365,991 est29=VFO568Z,831,1601 est30=AFJ412Z,851,1606 est31=CHG846Z,851,1600 est32=VFI434Z,851,1615 est33=VFI641Z,852,1602 est34=VFK364Z,902,1601 est35=AFE158Z,933,1620 est36=AFH772Z,934,1606 est37=VFM203Z,936,1615 est38=SFL448Z,937,1601 est39=VFK387Z,937,1588 est40=AFD417Z,939,1627 est41=VFD523Z,1029,1614 est42=VFE328Z,1047,1603 est43=VFJ767Z,1081,1701 est44=SLI621Z,1188,1629 est45=AHN667Z,1199,1913 est46=VFJ626Z,1219,1922 est47=AFK883Z,1260,1943 est48=AFB636Z,1280,1926 est49=VFK565Z,1282,1926 est50=SFE426Z,1283,1755 est51=CFH851Z,1329,1919 est52=FC-AA22E,1400,1975 est53=VSB221E,1520,1997 est54=AFG187Z,1528,1927 est55=CFH851H,1532,2532 est56=VSI524Z,1533,1768 est57=VFM750Z,1608,1924 est58=VHF692Z,1665,1922
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Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1. 6 |
Homology vs DNA |
Query= Contig-U14948-1 (Contig-U14948-1Q) /CSM_Contig/Contig-U14948-1Q.Seq.d (2532 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AF298834) Dictyostelium discoideum eukaryotic release facto... 2633 0.0 2 (BJ436255) Dictyostelium discoideum cDNA clone:ddv30g17, 3' ... 1344 0.0 1 (BJ431996) Dictyostelium discoideum cDNA clone:ddv17d10, 3' ... 1312 0.0 1 (BJ379605) Dictyostelium discoideum cDNA clone:ddc35l12, 3' ... 1312 0.0 1 (BJ344385) Dictyostelium discoideum cDNA clone:dda19h04, 3' ... 1304 0.0 1 (BJ433395) Dictyostelium discoideum cDNA clone:ddv21p15, 3' ... 1211 0.0 1 (BJ324009) Dictyostelium discoideum cDNA clone:dda4g10, 5' e... 1207 0.0 1 (BJ432281) Dictyostelium discoideum cDNA clone:ddv18a12, 3' ... 1176 0.0 2 (BJ342100) Dictyostelium discoideum cDNA clone:dda9c15, 3' e... 1150 0.0 1 (BJ343641) Dictyostelium discoideum cDNA clone:dda16p17, 3' ... 1148 0.0 1 (BJ434812) Dictyostelium discoideum cDNA clone:ddv25e02, 3' ... 1144 0.0 1 (BJ341517) Dictyostelium discoideum cDNA clone:dda7b06, 3' e... 1138 0.0 1 (BJ433453) Dictyostelium discoideum cDNA clone:ddv21n21, 3' ... 1134 0.0 1 (BJ401498) Dictyostelium discoideum cDNA clone:dds23p12, 3' ... 1055 0.0 2 (BJ416127) Dictyostelium discoideum cDNA clone:ddv25e02, 5' ... 1027 0.0 2 (BJ433031) Dictyostelium discoideum cDNA clone:ddv20f17, 3' ... 716 0.0 5 (BJ355889) Dictyostelium discoideum cDNA clone:dda58e18, 3' ... 622 0.0 5 (BJ430658) Dictyostelium discoideum cDNA clone:ddv8m05, 3' e... 959 0.0 1 (BJ415181) Dictyostelium discoideum cDNA clone:ddv21p15, 5' ... 876 0.0 2 (BJ432925) Dictyostelium discoideum cDNA clone:ddv20c08, 3' ... 583 0.0 5 (BJ416467) Dictyostelium discoideum cDNA clone:ddv26d13, 5' ... 846 0.0 2 (BJ324902) Dictyostelium discoideum cDNA clone:dda8j17, 5' e... 841 0.0 2 (BJ365446) Dictyostelium discoideum cDNA clone:ddc35l12, 5' ... 841 0.0 2 (BJ328069) Dictyostelium discoideum cDNA clone:dda22f22, 5' ... 839 0.0 2 (BJ330247) Dictyostelium discoideum cDNA clone:dda27j22, 5' ... 839 0.0 2 (BJ414836) Dictyostelium discoideum cDNA clone:ddv20f17, 5' ... 837 0.0 2 (BJ426702) Dictyostelium discoideum cDNA clone:ddv59n24, 5' ... 835 0.0 2 (BJ415408) Dictyostelium discoideum cDNA clone:ddv22a17, 5' ... 833 0.0 2 (BJ413884) Dictyostelium discoideum cDNA clone:ddv17d10, 5' ... 833 0.0 2 (BJ347694) Dictyostelium discoideum cDNA clone:dda27j22, 3' ... 581 0.0 4 (BJ412372) Dictyostelium discoideum cDNA clone:ddv8m05, 5' e... 831 0.0 2 (BJ326504) Dictyostelium discoideum cDNA clone:dda16p17, 5' ... 829 0.0 2 (BJ325336) Dictyostelium discoideum cDNA clone:dda13m21, 5' ... 829 0.0 2 (BJ414736) Dictyostelium discoideum cDNA clone:ddv20c08, 5' ... 839 0.0 2 (BJ415241) Dictyostelium discoideum cDNA clone:ddv21n21, 5' ... 819 0.0 2 (BJ430940) Dictyostelium discoideum cDNA clone:ddv9h07, 3' e... 898 0.0 1 (BJ337742) Dictyostelium discoideum cDNA clone:dda58e18, 5' ... 815 0.0 2 (BJ325067) Dictyostelium discoideum cDNA clone:dda9c15, 5' e... 811 0.0 2 (BJ324581) Dictyostelium discoideum cDNA clone:dda7b06, 5' e... 811 0.0 2 (BJ361284) Dictyostelium discoideum cDNA clone:ddc16f14, 5' ... 811 0.0 2 (BJ417425) Dictyostelium discoideum cDNA clone:ddv30g17, 5' ... 803 0.0 2 (BJ327086) Dictyostelium discoideum cDNA clone:dda19h04, 5' ... 500 0.0 4 (BJ390713) Dictyostelium discoideum cDNA clone:dds23p12, 5' ... 749 0.0 3 (BJ433637) Dictyostelium discoideum cDNA clone:ddv22a17, 3' ... 458 0.0 4 (BJ412642) Dictyostelium discoideum cDNA clone:ddv9h07, 5' e... 726 0.0 3 (BJ417284) Dictyostelium discoideum cDNA clone:ddv30h06, 5' ... 743 0.0 2 (BJ340899) Dictyostelium discoideum cDNA clone:dda4g10, 3' e... 434 0.0 4 (AU268826) Dictyostelium discoideum vegetative cDNA clone:VS... 726 0.0 2 (BJ343354) Dictyostelium discoideum cDNA clone:dda22f22, 3' ... 394 0.0 4 (C23641) Dictyostelium discoideum gamete cDNA, clone FC-AA22. 333 0.0 4 (AU053423) Dictyostelium discoideum slug cDNA, clone SLI621. 646 0.0 1 (BJ400217) Dictyostelium discoideum cDNA clone:dds9d08, 3' e... 458 e-166 3 (AU261900) Dictyostelium discoideum vegetative cDNA clone:VS... 333 e-134 3 (BJ342423) Dictyostelium discoideum cDNA clone:dda13m21, 3' ... 333 e-123 2 (BJ374860) Dictyostelium discoideum cDNA clone:ddc16f14, 3' ... 315 e-122 4 (BJ435241) Dictyostelium discoideum cDNA clone:ddv26d13, 3' ... 333 e-109 2 (BJ440161) Dictyostelium discoideum cDNA clone:ddv42g24, 3' ... 172 7e-92 3 (DY886248) CeleSEQ1823 Cunninghamella elegans pBluescript (E... 98 1e-51 8 (EH013212) USDA-FP_186035 Lysiphlebus testaceipes adult whol... 129 1e-50 5 (EC388150) A02_A02gm2a3_pDNRf_490732 Myzus persicae, line G0... 88 2e-45 7 (FC814869) Sr_pAMT7_01h05_T7 S. ratti mixed stage pAMP Stron... 56 4e-40 8 (FF312397) 279384172 Pea aphid whole body normalized full le... 86 5e-40 6 (FC819491) Sr_pAMT7_014p21_T7 S. ratti mixed stage pAMP Stro... 56 1e-38 7 (FC820288) Sr_pAMT7_017e09_T7 S. ratti mixed stage pAMP Stro... 56 2e-38 7 (DY886443) CeleSEQ2104 Cunninghamella elegans pBluescript (E... 98 1e-36 7 (FE250005) CAPH2605.fwd CAPH Naegleria gruberi amoeba stage ... 62 3e-36 7 (DY888644) CeleSEQ5819 Cunninghamella elegans pBluescript (E... 98 7e-36 7 (FC819324) Sr_pAMT7_014h22_T7 S. ratti mixed stage pAMP Stro... 52 2e-35 8 (FE244181) CAPG8051.fwd CAPG Naegleria gruberi amoeba stage ... 62 8e-34 6 (FE236564) CAPG3951.fwd CAPG Naegleria gruberi amoeba stage ... 62 1e-33 6 (EH014500) USDA-FP_187194 Lysiphlebus testaceipes adult whol... 129 1e-33 3 (FC816485) Sr_pAMT7_06e03_T7 S. ratti mixed stage pAMP Stron... 54 2e-33 6 (FE242403) CAPG7151.fwd CAPG Naegleria gruberi amoeba stage ... 62 3e-32 5 (FE237870) CAPG4579.fwd CAPG Naegleria gruberi amoeba stage ... 62 6e-32 6 (BU172713) AGENCOURT_7966448 NIH_MGC_72 Homo sapiens cDNA cl... 88 2e-31 5 (EC325624) GUTF089550C7 POSSUM_01-POSSUM-GUT-2KB Trichosurus... 58 5e-31 7 (BT008184) Synthetic construct Homo sapiens eukaryotic trans... 88 7e-31 5 (AY892822) Synthetic construct Homo sapiens clone FLH024295.... 88 7e-31 5 (AY892821) Synthetic construct Homo sapiens clone FLH024294.... 88 7e-31 5 (AY890351) Synthetic construct Homo sapiens clone FLH024299.... 88 7e-31 5 (AY890350) Synthetic construct Homo sapiens clone FLH024298.... 88 7e-31 5 (BT007374) Homo sapiens eukaryotic translation termination f... 88 7e-31 5 (DQ893890) Synthetic construct Homo sapiens clone IMAGE:1000... 88 8e-31 5 (DQ890706) Synthetic construct clone IMAGE:100003336; FLH165... 88 8e-31 5 (AY401898) Homo sapiens ETF1 gene, VIRTUAL TRANSCRIPT, parti... 88 9e-31 5 (BD451332) Human Cancer Associated Gene Sequences and Polype... 88 1e-30 5 (CO648721) ILLUMIGEN_MCQ_42186 Katze_MMPB2 Macaca mulatta cD... 88 1e-30 4 (AK312510) Homo sapiens cDNA, FLJ92875, Homo sapiens eukaryo... 88 1e-30 5 (DQ331844) Synthetic construct Saccharomyces cerevisiae clon... 54 1e-30 7 (DJ204938) Method for identification of useful proteins deri... 54 1e-30 7 (CS402968) Sequence 58 from Patent WO2006082059. 54 1e-30 7 (CS380640) Sequence 21 from Patent WO2006082058. 54 1e-30 7 (AX830556) Sequence 1276 from Patent WO03072602. 54 1e-30 7 (AX819526) Sequence 1276 from Patent EP1338608. 54 1e-30 7 (AX595428) Sequence 1082 from Patent EP1258494. 54 1e-30 7 (U90176) Human eukaryotic release factor 1 eRF1 mRNA, comple... 88 2e-30 5 (BC088358) Homo sapiens eukaryotic translation termination f... 88 3e-30 5 (CK253154) EST736791 potato callus cDNA library, normalized ... 60 3e-30 5 (AY401899) Pan troglodytes ETF1 gene, VIRTUAL TRANSCRIPT, pa... 88 3e-30 5 (BP293568) Homo sapiens cDNA clone: LNG12751, Sugano cDNA li... 88 3e-30 4
>(AF298834) Dictyostelium discoideum eukaryotic release factor 1 (erf1) mRNA, complete cds. Length = 1598
Score = 2633 bits (1328), Expect(2) = 0.0 Identities = 1331/1332 (99%) Strand = Plus / Plus
Query: 181 ttggaagctgccagaggtaatggtacatctatgatttcattaattattcgtccaggtgat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 ttggaagctgccagaggtaatggtacatctatgatttcattaattattcgtccaggtgat 210
Query: 241 caaattgcaaaagttaataaaatgttagcagaagagtatggtacagcatcaaatattaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 caaattgcaaaagttaataaaatgttagcagaagagtatggtacagcatcaaatattaaa 270
Query: 301 tcaagagttaatagattatcagtattgggtgcaattacatcagcacaacaaagattaaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 tcaagagttaatagattatcagtattgggtgcaattacatcagcacaacaaagattaaag 330
Query: 361 ttatatactaaagtaccagataatggtttagttatttattgcggtacaatggttacagat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 ttatatactaaagtaccagataatggtttagttatttattgcggtacaatggttacagat 390
Query: 421 gaaggtaaagagaaaccagtacgtatcgatattgaaccattcaaaccaatcaatacctca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 gaaggtaaagagaaaccagtacgtatcgatattgaaccattcaaaccaatcaatacctca 450
Query: 481 ctctatttatgtgataataaattccatacagcaccattgggtgaattattagagagtgat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 ctctatttatgtgataataaattccatacagcaccattgggtgaattattagagagtgat 510
Query: 541 gaaaagtttggtttcatcgtcgtagatggtaatggtgcactctttggtttattatgtggt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 gaaaagtttggtttcatcgtcgtagatggtaatggtgcactctttggtttattatgtggt 570
Query: 601 tcaaccagaacagttctccataagattacagtagatctcccaaagaaacacggtcgtggt 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 tcaaccagaacagttctccataagattacagtagatctcccaaagaaacacggtcgtggt 630
Query: 661 ggtcaatctgcccttcgtttcgctcgtcttcgtatggaaaaacgtcacaattacgttcgt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 ggtcaatctgcccttcgtttcgctcgtcttcgtatggaaaaacgtcacaattacgttcgt 690
Query: 721 aaagtttcagagttggccacccaattctacgtcaccaatgataaaccaaacgtttcaggt 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 691 aaagtttcagagttggccacccaattctacgtcaccaatgataaaccaaacgtttcaggt 750
Query: 781 ttgattttagctggttctgccgatttcaagactgaacttggtacctctgatatgtttgat 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 ttgattttagctggttctgccgatttcaagactgaacttggtacctctgatatgtttgat 810
Query: 841 caacgtcttcgtgaaaagatcattaaaatcgtcgatgtttcctatggtggtgataatggt 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 811 caacgtcttcgtgaaaagatcattaaaatcgtcgatgtttcctatggtggtgataatggt 870
Query: 901 ttcaatcaagctatcgaattatctggtgaagttctctcaagtgtcaaattcattcaagag 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 871 ttcaatcaagctatcgaattatctggtgaagttctctcaagtgtcaaattcattcaagag 930
Query: 961 aagaaattaatctcacaattctttgaagagatcgcacaagacactggtaagtattgtttc 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 931 aagaaattaatctcacaattctttgaagagatcgcacaagacactggtaagtattgtttc 990
Query: 1021 ggtatcgctgatactttgaaagctttggacttgggtgctgctcacactttaatcgtttgg 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 991 ggtatcgctgatactttgaaagctttggacttgggtgctgctcacactttaatcgtttgg 1050
Query: 1081 gaatcattggaaacaattcgttacttacttcgtttaccaactggtgaagagaaagtcatc 1140 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1051 gaatcattggaaacaattcgttactttcttcgtttaccaactggtgaagagaaagtcatc 1110
Query: 1141 tttttaaataaagatcaaaataaagatgcctctgtctttaaggataaagaatctggtctt 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1111 tttttaaataaagatcaaaataaagatgcctctgtctttaaggataaagaatctggtctt 1170
Query: 1201 gactatgaaatcgtcgaagaaatgccaatcgttgagtggttcgccaataactacaaaaac 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1171 gactatgaaatcgtcgaagaaatgccaatcgttgagtggttcgccaataactacaaaaac 1230
Query: 1261 tttggtgcctctctcgaattcgtcaccaacaaatctcaagaaggttcacaattctgtaaa 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1231 tttggtgcctctctcgaattcgtcaccaacaaatctcaagaaggttcacaattctgtaaa 1290
Query: 1321 ggttttggtggtttgggtggtttactccgttatcaagtagatttcgctcaactcaatgat 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1291 ggttttggtggtttgggtggtttactccgttatcaagtagatttcgctcaactcaatgat 1350
Query: 1381 ttcgataatccagatgagaatgaatacgatgatagtgattcagacttttgaccaattgaa 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1351 ttcgataatccagatgagaatgaatacgatgatagtgattcagacttttgaccaattgaa 1410
Query: 1441 aaaaccagcaacagaaatggtactggtttggtctcctccacttttaaggttgccccttcc 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1411 aaaaccagcaacagaaatggtactggtttggtctcctccacttttaaggttgccccttcc 1470
Query: 1501 ttctctaccatt 1512 |||||||||||| Sbjct: 1471 ttctctaccatt 1482
Score = 99.6 bits (50), Expect(2) = 0.0 Identities = 51/52 (98%) Strand = Plus / Plus
Query: 105 gatgtcagctgttgatgatcaacaaaatgcagataagcaagttgaacaatgg 156 ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 gatgtcagckgttgatgatcaacaaaatgcagataagcaagttgaacaatgg 126
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 2,155,215,478 Number of extensions: 122885575 Number of successful extensions: 9287189 Number of sequences better than 10.0: 2591 Length of query: 2532 Length of database: 95,242,211,685 Length adjustment: 25 Effective length of query: 2507 Effective length of database: 97,216,030,006 Effective search space: 243720587225042 Effective search space used: 243720587225042 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.13 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
2 |
VF (FL, S) |
13 |
AH (FL, L) |
1 |
AF (FL, S) |
8 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
2 |
CH (FL, L) |
1 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
0 |