| Contig-U14925-1 |
| Contig ID |
Contig-U14925-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1651 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
2949292 |
| End point |
2947641 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
11 |
| Number of EST |
19 |
| Link to clone list |
U14925 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 1. 5 |
| Homology vs DNA |
Query= Contig-U14925-1 (Contig-U14925-1Q) /CSM_Contig/Contig-U14925-1Q.Seq.d
(1651 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ346188) Dictyostelium discoideum cDNA clone:dda30k03, 3' ... 1211 0.0 2
(BJ375227) Dictyostelium discoideum cDNA clone:ddc17n21, 3' ... 1049 0.0 2
(BJ399310) Dictyostelium discoideum cDNA clone:dds5j09, 3' e... 1031 0.0 3
(BJ400807) Dictyostelium discoideum cDNA clone:dds14m22, 3' ... 1029 0.0 3
(BJ344275) Dictyostelium discoideum cDNA clone:dda18a03, 3' ... 969 0.0 2
(BJ340592) Dictyostelium discoideum cDNA clone:dda2k22, 3' e... 959 0.0 2
(BJ398943) Dictyostelium discoideum cDNA clone:dds3c08, 3' e... 519 0.0 3
(BJ325904) Dictyostelium discoideum cDNA clone:dda2k22, 5' e... 389 0.0 4
(BJ328933) Dictyostelium discoideum cDNA clone:dda30k03, 5' ... 373 0.0 4
(BJ387544) Dictyostelium discoideum cDNA clone:dds3c08, 5' e... 339 0.0 4
(BJ436056) Dictyostelium discoideum cDNA clone:ddv29p15, 3' ... 660 0.0 2
(BJ326777) Dictyostelium discoideum cDNA clone:dda18a03, 5' ... 337 0.0 4
(BJ387842) Dictyostelium discoideum cDNA clone:dds5j09, 5' e... 389 0.0 3
(BJ342695) Dictyostelium discoideum cDNA clone:dda1n04, 3' e... 517 0.0 2
(BJ417171) Dictyostelium discoideum cDNA clone:ddv29p15, 5' ... 256 e-141 3
(AU266230) Dictyostelium discoideum vegetative cDNA clone:VS... 365 4e-96 1
(AU266231) Dictyostelium discoideum vegetative cDNA clone:VS... 339 2e-88 1
(BJ398978) Dictyostelium discoideum cDNA clone:dds3p07, 3' e... 161 3e-66 2
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 44 2e-05 5
(EY332208) CAWY4712.rev CAWY Helobdella robusta Subtracted E... 48 4e-04 3
(EY327713) CAWY12804.rev CAWY Helobdella robusta Subtracted ... 48 6e-04 3
(EY327714) CAWY12804.fwd CAWY Helobdella robusta Subtracted ... 48 6e-04 3
(BJ413463) Dictyostelium discoideum cDNA clone:ddv15l18, 5' ... 44 9e-04 3
(BJ359460) Dictyostelium discoideum cDNA clone:ddc14h23, 5' ... 44 0.001 3
(EL595591) ED417 P. monodon hemocyte library Penaeus monodon... 46 0.002 3
(AC115286) Homo sapiens chromosome 1 clone RP4-657M3, comple... 40 0.003 6
(AZ162407) SP_0071_B2_D12_T7A Strongylocentrotus purpuratus,... 48 0.004 2
(AC096589) Homo sapiens BAC clone RP11-744G10 from 2, comple... 56 0.004 1
(AC064845) Homo sapiens chromosome 2 clone RP11-55E16, WORKI... 56 0.004 1
(CZ445965) MCF725b21TR Human MCF7 breast cancer cell line li... 56 0.004 1
(EY336053) CAWY7444.rev CAWY Helobdella robusta Subtracted E... 48 0.006 2
(EY331279) CAWY4071.rev CAWY Helobdella robusta Subtracted E... 48 0.007 2
(EY334481) CAWY6390.rev CAWY Helobdella robusta Subtracted E... 48 0.008 2
(EY331280) CAWY4071.fwd CAWY Helobdella robusta Subtracted E... 48 0.008 2
(EY334482) CAWY6390.fwd CAWY Helobdella robusta Subtracted E... 48 0.008 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 44 0.009 3
(AF362369) Dictyostelium discoideum histidine kinase DhkG (d... 40 0.010 4
(AC099472) Rattus norvegicus clone CH230-143B10, WORKING DRA... 44 0.011 2
(AC174092) Strongylocentrotus purpuratus clone R3-5F16, WORK... 40 0.012 2
(AC168404) Strongylocentrotus purpuratus clone R3-4002H9, WO... 44 0.012 2
(AC157958) Strongylocentrotus purpuratus clone R3-4002H9, WO... 44 0.012 2
(DY889522) CeleSEQ11406 Cunninghamella elegans pBluescript (... 44 0.014 2
(M31058) Reovirus serotype 3 minor core protein lambda 3 (L1... 54 0.017 1
(M24734) Reovirus serotype 1 minor core protein lambda-3 (L1... 54 0.017 1
(EF494435) Mammalian orthoreovirus 3 strain T3D segment L1, ... 54 0.017 1
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 42 0.019 15
(M16501) T.equiperdum barren region upstream from the VSG-1 ... 36 0.027 4
(AJ581661) Dictyostelium discoideum partial dstB gene for Dd... 40 0.040 4
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 44 0.042 2
(CR383667) Zebrafish DNA sequence from clone CH211-229P19 in... 40 0.044 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 44 0.044 3
(CU896586) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.044 2
(AF474335) Dictyostelium discoideum ABC transporter ABCC.3 (... 42 0.051 2
(EH299181) UAHYP_08A_R_D03 UaHyphae_ARS Uromyces appendicula... 40 0.055 2
(EH299170) UAHYP_08A_F_D03 UaHyphae_ARS Uromyces appendicula... 40 0.055 2
(EH011935) USDA-FP_184885 Lysiphlebus testaceipes adult whol... 42 0.055 2
(EI379410) POTBH53TR Solanum tuberosum RHPOTKEY BAC ends Sol... 36 0.055 2
(DT580135) ltu01-35ms1-f02 Ltu01 Liriodendron tulipifera cDN... 38 0.061 3
(CR450727) Zebrafish DNA sequence from clone CH211-158E19 in... 52 0.069 1
(AC179350) Strongylocentrotus purpuratus clone R3-59A11, WOR... 52 0.069 1
(AC168812) Strongylocentrotus purpuratus clone R3-13G22, WOR... 52 0.069 1
(AC168576) Strongylocentrotus purpuratus clone R3-3065L18, W... 52 0.069 1
(CW862599) she2h99-14.g_084.ab1 Whole-genome shotgun library... 52 0.069 1
(DY893256) CeleSEQ12543 Cunninghamella elegans pBluescript (... 52 0.069 1
(BJ435046) Dictyostelium discoideum cDNA clone:ddv25k22, 3' ... 52 0.069 1
(DY542504) HPO-N-S01-0394-LF Hematopoietic cDNA library Pena... 44 0.073 2
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 38 0.086 5
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 40 0.10 3
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 0.10 8
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 46 0.10 3
(AL406913) T3 end of clone AU0AA015B02 of library AU0AA from... 48 0.14 2
(AL495801) T. brucei sheared genomic DNA clone 344e07, rever... 40 0.15 3
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 40 0.15 2
(BX323818) Zebrafish DNA sequence from clone DKEY-48H7 in li... 40 0.16 2
(AC190444) Aotus nancymaae clone CH258-458H17, WORKING DRAFT... 38 0.16 2
(AC180757) Strongylocentrotus purpuratus clone R3-3078J18, W... 40 0.16 2
(AC176768) Strongylocentrotus purpuratus clone R3-1110M6, WO... 40 0.16 2
(AC177313) Strongylocentrotus purpuratus clone R3-1032P24, W... 40 0.16 2
(EY499502) CBBP4722.rev CBBP Hirudo medicinalis hermaphrodit... 36 0.16 3
(CU928017) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 0.18 2
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 0.18 11
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 44 0.18 9
(U60086) Dictyostelium discoideum multidrug resistance trans... 40 0.19 2
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 40 0.19 10
(AY813568) Schistosoma japonicum SJCHGC09529 protein mRNA, c... 36 0.20 2
(AB177890) Plasmodium falciparum PfDGAT1 mRNA for acyl-CoA:d... 40 0.20 4
(EY384106) CAXA4969.fwd CAXA Helobdella robusta Subtracted L... 40 0.20 2
(EY316190) CAWX26477.rev CAWX Helobdella robusta Primary Ear... 40 0.20 2
(BU767593) SJEATG09 SJE Schistosoma japonicum cDNA, mRNA seq... 36 0.20 2
(BJ407924) Dictyostelium discoideum cDNA clone:dds44h06, 3' ... 40 0.20 2
(AJ307410) Yarrowia lipolytica complete mitochondrial genome. 40 0.21 7
(BU775208) SJEAZF07 SJE Schistosoma japonicum cDNA, mRNA seq... 36 0.21 2
(AY811210) Schistosoma japonicum SJCHGC06852 protein mRNA, p... 36 0.21 2
(BJ364841) Dictyostelium discoideum cDNA clone:ddc33o01, 5' ... 48 0.21 2
(BJ326173) Dictyostelium discoideum cDNA clone:dda15f18, 5' ... 36 0.21 4
(BJ325930) Dictyostelium discoideum cDNA clone:dda3e05, 5' e... 36 0.21 4
(AC116564) Homo sapiens BAC clone RP11-761E7 from 4, complet... 40 0.22 7
(AU060887) Dictyostelium discoideum slug cDNA, clone SLC101. 40 0.22 2
(AE001402) Plasmodium falciparum 3D7 chromosome 2 section 39... 42 0.22 4
(CI997711) Marsupenaeus japonicus cDNA, clone:YAQ01A01NGRM00... 44 0.25 2
>(BJ346188) Dictyostelium discoideum cDNA clone:dda30k03, 3' end,
single read.
Length = 795
Score = 1211 bits (611), Expect(2) = 0.0
Identities = 611/611 (100%)
Strand = Plus / Minus
Query: 857 atcagtattgatgggaagtagtatagcatctaaattaattggtatagcaggttcaattca 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 atcagtattgatgggaagtagtatagcatctaaattaattggtatagcaggttcaattca 736
Query: 917 acaattagcaaatattccagctggtcatttacaaacattaggtgctgataagaaagcatt 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 acaattagcaaatattccagctggtcatttacaaacattaggtgctgataagaaagcatt 676
Query: 977 ggcaggttttagtggtatgtcaaatagaaagtttcaaatgggtttaatttcacaatgtga 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggcaggttttagtggtatgtcaaatagaaagtttcaaatgggtttaatttcacaatgtga 616
Query: 1037 tattgtaaagaaagcaccaccattcttacaagttaaagcattacgtactctaactggtag 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tattgtaaagaaagcaccaccattcttacaagttaaagcattacgtactctaactggtag 556
Query: 1097 agtatcgattgctgcaagagttgatgctcaacaagattcatcattctatggtgaaacagg 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agtatcgattgctgcaagagttgatgctcaacaagattcatcattctatggtgaaacagg 496
Query: 1157 tagacaatatcgtgatgaaattttagctaaaattgagaaatggcaagaaccaccacctca 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tagacaatatcgtgatgaaattttagctaaaattgagaaatggcaagaaccaccacctca 436
Query: 1217 aaaacaagataaagcactacctgcccctgaagagggtaagagaaccaagagaggtggtaa 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaacaagataaagcactacctgcccctgaagagggtaagagaaccaagagaggtggtaa 376
Query: 1277 aaaggctagactatacaaacagaaatatggtgtcaccgattttcaaaaagctaaaaatcg 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaaggctagactatacaaacagaaatatggtgtcaccgattttcaaaaagctaaaaatcg 316
Query: 1337 tatgtcctttggtgttgaagagaaaactataggtgaaagtggtattggtttaggtatgat 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tatgtcctttggtgttgaagagaaaactataggtgaaagtggtattggtttaggtatgat 256
Query: 1397 tggtggtgaaagtggtaaagtaagactggttgctcaagaaagaggtatcctaaagaaaaa 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tggtggtgaaagtggtaaagtaagactggttgctcaagaaagaggtatcctaaagaaaaa 196
Query: 1457 gaaattggaac 1467
|||||||||||
Sbjct: 195 gaaattggaac 185
Score = 222 bits (112), Expect(2) = 0.0
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 1475 ttatggtggttctatgacttctgcttcaactagtggtcttgcaagtgttgccattactcc 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttatggtggttctatgacttctgcttcaactagtggtcttgcaagtgttgccattactcc 118
Query: 1535 tgtacaaggcttacaactttctattactcaaaatatacgtgaacaagataat 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tgtacaaggcttacaactttctattactcaaaatatacgtgaacaagataat 66
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,733,108,573
Number of extensions: 111773731
Number of successful extensions: 12016869
Number of sequences better than 10.0: 920
Length of query: 1651
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1627
Effective length of database: 97,308,875,965
Effective search space: 158321541195055
Effective search space used: 158321541195055
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.13 |
| Homology vs Protein |
Query= Contig-U14925-1 (Contig-U14925-1Q) /CSM_Contig/Contig-U14925-1Q.Seq.d
(1651 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC150800_1(AC150800|pid:none) Medicago truncatula chromosome 7 c... 300 8e-80
AK066109_1(AK066109|pid:none) Oryza sativa Japonica Group cDNA c... 286 2e-75
BT036493_1(BT036493|pid:none) Zea mays full-length cDNA clone ZM... 286 2e-75
BT054842_1(BT054842|pid:none) Zea mays full-length cDNA clone ZM... 284 6e-75
AP004010_10(AP004010|pid:none) Oryza sativa Japonica Group genom... 278 3e-73
CP000584_134(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 266 1e-69
AB463201_1(AB463201|pid:none) Synthetic construct DNA, clone: pF... 265 4e-69
(Q8WWY3) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp... 264 6e-69
AY040822_1(AY040822|pid:none) Homo sapiens U4/U6 snRNP-associate... 264 6e-69
(Q6NVP6) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp... 264 6e-69
AK033283_1(AK033283|pid:none) Mus musculus 15 days embryo male t... 264 8e-69
AK033190_1(AK033190|pid:none) Mus musculus 15 days embryo male t... 262 2e-68
CP001575_252(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 261 7e-68
CR954202_367(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 261 7e-68
(Q5U5C5) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp... 256 2e-66
BC061461_1(BC061461|pid:none) Mus musculus PRP31 pre-mRNA proces... 254 5e-66
AK301709_1(AK301709|pid:none) Homo sapiens cDNA FLJ59251 complet... 254 8e-66
(Q7SXM7) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp... 253 1e-65
AE014296_2640(AE014296|pid:none) Drosophila melanogaster chromos... 243 1e-62
AK005294_1(AK005294|pid:none) Mus musculus adult male cerebellum... 236 2e-60
AF308303_1(AF308303|pid:none) Homo sapiens serologically defined... 235 3e-60
AC006708_15(AC006708|pid:none) Caenorhabditis elegans cosmid Y11... 226 2e-57
FN357551_9(FN357551|pid:none) Schistosoma mansoni genome sequenc... 221 6e-56
AL035475_27(AL035475|pid:none) Plasmodium falciparum MAL4P2. 209 2e-52
CR382128_529(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 171 9e-41
AP007169_339(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 162 3e-38
CR382135_334(CR382135|pid:none) Debaryomyces hansenii strain CBS... 155 5e-36
AK044457_1(AK044457|pid:none) Mus musculus adult retina cDNA, RI... 149 4e-34
CP000499_437(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 147 9e-34
CR382124_618(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 141 8e-32
AM920431_493(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 140 1e-31
FM992689_597(FM992689|pid:none) Candida dubliniensis CD36 chromo... 139 4e-31
(P49704) RecName: Full=Pre-mRNA-processing factor 31; &S64386(S... 134 1e-29
CU928170_505(CU928170|pid:none) Kluyveromyces thermotolerans str... 131 6e-29
AF043704_1(AF043704|pid:none) Caenorhabditis elegans cosmid W01B... 125 5e-27
CU928175_514(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 124 1e-26
AJ010592_34(AJ010592|pid:none) Guillardia theta DNA for complete... 117 9e-25
AC003671_6(AC003671|pid:none) Arabidopsis thaliana chromosome 1 ... 114 1e-23
AY735555_1(AY735555|pid:none) Arabidopsis thaliana chromosome 1 ... 114 1e-23
CP000505_375(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 112 3e-23
AF201092_1(AF201092|pid:none) Sulfolobus acidocaldarius NOP56 ho... 112 4e-23
AY735554_1(AY735554|pid:none) Arabidopsis thaliana chromosome 1 ... 111 9e-23
AE006641_852(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 111 9e-23
(Q55FI4) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle... 110 2e-22
CP001399_1228(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 110 2e-22
CP001400_1150(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 108 4e-22
BC077204_1(BC077204|pid:none) Xenopus laevis MGC78950 protein, m... 108 4e-22
BC122512_1(BC122512|pid:none) Xenopus laevis MGC78950 protein, m... 108 4e-22
CR762270_1(CR762270|pid:none) Xenopus tropicalis finished cDNA, ... 107 2e-21
BC044082_1(BC044082|pid:none) Xenopus laevis similar to nucleola... 107 2e-21
BC064169_1(BC064169|pid:none) Xenopus tropicalis nucleolar prote... 107 2e-21
BC106291_1(BC106291|pid:none) Xenopus laevis similar to nucleola... 107 2e-21
AM433343_4(AM433343|pid:none) Vitis vinifera contig VV78X083692.... 105 4e-21
BC151725_1(BC151725|pid:none) Bos taurus NOP58 ribonucleoprotein... 103 1e-20
BX950229_596(BX950229|pid:none) Methanococcus maripaludis strain... 103 2e-20
FN357418_41(FN357418|pid:none) Schistosoma mansoni genome sequen... 103 2e-20
CP000855_1305(CP000855|pid:none) Thermococcus onnurineus NA1, co... 103 2e-20
(Q9P7S7) RecName: Full=Nucleolar protein 58; &AL138854_6(AL1388... 102 3e-20
AL117554_1(AL117554|pid:none) Homo sapiens mRNA; cDNA DKFZp564H2... 102 3e-20
T17299(T17299)hypothetical protein DKFZp564H2171.1 - human (frag... 102 3e-20
CR380953_123(CR380953|pid:none) Candida glabrata strain CBS138 c... 102 3e-20
AE014134_1244(AE014134|pid:none) Drosophila melanogaster chromos... 102 4e-20
BC009306_1(BC009306|pid:none) Homo sapiens NOP58 ribonucleoprote... 102 4e-20
CR859793_1(CR859793|pid:none) Pongo abelii mRNA; cDNA DKFZp468L1... 102 4e-20
AJ249465_1(AJ249465|pid:none) Drosophila melanogaster mRNA for D... 102 4e-20
FN314948_1(FN314948|pid:none) Schistosoma japonicum isolate Anhu... 102 5e-20
FN314949_1(FN314949|pid:none) Schistosoma japonicum isolate Anhu... 102 5e-20
BC151884_1(BC151884|pid:none) Danio rerio NOP58 ribonucleoprotei... 102 5e-20
BC155194_1(BC155194|pid:none) Danio rerio NOP58 ribonucleoprotei... 102 5e-20
AE009439_559(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 102 5e-20
BC061961_1(BC061961|pid:none) Danio rerio NOP58 ribonucleoprotei... 102 5e-20
BC044394_1(BC044394|pid:none) Danio rerio NOP58 ribonucleoprotei... 102 5e-20
B72528(B72528)probable nucleolar protein NOP5 APE2199 - Aeropyru... 101 7e-20
AK023975_1(AK023975|pid:none) Homo sapiens cDNA FLJ13913 fis, cl... 101 9e-20
CP000609_999(CP000609|pid:none) Methanococcus maripaludis C5, co... 100 1e-19
EU515128_1(EU515128|pid:none) Dunaliella salina MAR-binding prot... 100 2e-19
AE014297_3277(AE014297|pid:none) Drosophila melanogaster chromos... 100 3e-19
CP000742_1447(CP000742|pid:none) Methanococcus vannielii SB, com... 100 3e-19
BT001613_1(BT001613|pid:none) Drosophila melanogaster RE33426 fu... 100 3e-19
CP001398_465(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 99 3e-19
CP000561_1091(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 99 5e-19
CP000745_1603(CP000745|pid:none) Methanococcus maripaludis C7, c... 99 6e-19
AK044216_1(AK044216|pid:none) Mus musculus adult retina cDNA, RI... 98 8e-19
AM910990_80(AM910990|pid:none) Plasmodium knowlesi strain H chro... 98 8e-19
AB059832_1(AB059832|pid:none) Nicotiana tabacum MARBPF mRNA for ... 98 8e-19
(Q9QZ86) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle... 98 1e-18
AF053232_1(AF053232|pid:none) Mus musculus SIK similar protein m... 98 1e-18
CP001014_1686(CP001014|pid:none) Thermoproteus neutrophilus V24S... 97 1e-18
AF069782_1(AF069782|pid:none) Rattus sp. unknown mRNA. 97 2e-18
AM502228_52(AM502228|pid:none) Leishmania infantum chromosome 10. 97 2e-18
GM016257_360(GM016257|pid:none) Sequence 1087 from Patent EP1923... 97 2e-18
AK133959_1(AK133959|pid:none) Mus musculus 8 days embryo whole b... 97 2e-18
AP006878_185(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 97 2e-18
CR761147_1(CR761147|pid:none) Xenopus tropicalis finished cDNA, ... 97 2e-18
CP000852_1257(CP000852|pid:none) Caldivirga maquilingensis IC-16... 96 3e-18
(A6RMY5) RecName: Full=Nucleolar protein 58; 96 4e-18
CP000575_1234(CP000575|pid:none) Staphylothermus marinus F1, com... 96 5e-18
AP008208_2433(AP008208|pid:none) Oryza sativa (japonica cultivar... 95 7e-18
AJ719454_1(AJ719454|pid:none) Gallus gallus mRNA for hypothetica... 95 7e-18
CP001142_240(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 95 9e-18
AJ311840_1(AJ311840|pid:none) Xenopus laevis mRNA for XNop56 pro... 95 9e-18
BC097676_1(BC097676|pid:none) Xenopus laevis XNop56 protein, mRN... 95 9e-18
AF007271_14(AF007271|pid:none) Arabidopsis thaliana BAC TM021B04... 95 9e-18
(Q9MAB3) RecName: Full=Probable nucleolar protein 5-2; AltName: ... 95 9e-18
AY754572_1(AY754572|pid:none) Drosophila miranda strain MSH22 No... 95 9e-18
X60437_1(X60437|pid:none) Drosophila subobscura Dnop56 gene and ... 94 1e-17
AB015431_1(AB015431|pid:none) Oryza sativa mRNA for SAR DNA bind... 94 1e-17
AP008209_1470(AP008209|pid:none) Oryza sativa (japonica cultivar... 94 1e-17
CP000816_70(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, com... 94 1e-17
AC149637_27(AC149637|pid:none) Medicago truncatula clone mth2-18... 94 2e-17
AK139924_1(AK139924|pid:none) Mus musculus 2 cells egg cDNA, RIK... 94 2e-17
AC121244_25(AC121244|pid:none) Medicago truncatula clone mth2-31... 94 2e-17
BT053087_1(BT053087|pid:none) Medicago truncatula clone MTYFL_FM... 94 2e-17
AM920427_1595(AM920427|pid:none) Penicillium chrysogenum Wiscons... 94 2e-17
BC086568_1(BC086568|pid:none) Rattus norvegicus nucleolar protei... 93 3e-17
(Q8X066) RecName: Full=Nucleolar protein 58; &AL669992_6(AL6699... 93 3e-17
AP008209_1480(AP008209|pid:none) Oryza sativa (japonica cultivar... 93 3e-17
CT005254_144(CT005254|pid:none) Leishmania major strain Friedlin... 92 4e-17
(Q3SZ63) RecName: Full=Nucleolar protein 56; AltName: Full=Nucle... 92 6e-17
(Q9D6Z1) RecName: Full=Nucleolar protein 56; AltName: Full=Nucle... 92 6e-17
CP000660_1323(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 92 6e-17
CP001574_670(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 92 6e-17
AK077795_1(AK077795|pid:none) Mus musculus adult male thymus cDN... 92 7e-17
AP007151_1100(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 92 7e-17
AM270362_35(AM270362|pid:none) Aspergillus niger contig An16c010... 91 9e-17
AK292721_1(AK292721|pid:none) Homo sapiens cDNA FLJ76962 complet... 91 9e-17
(Q5RA29) RecName: Full=Nucleolar protein 56; AltName: Full=Nucle... 91 9e-17
FN392322_280(FN392322|pid:none) Pichia pastoris GS115 chromosome... 91 9e-17
CP000866_1387(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 91 9e-17
BT052903_1(BT052903|pid:none) Medicago truncatula clone MTYFL_FM... 91 1e-16
AY365418_6(AY365418|pid:none) Epichloe festucae strain 1035.30 c... 91 1e-16
BT085852_1(BT085852|pid:none) Zea mays full-length cDNA clone ZM... 91 2e-16
AY950659_1(AY950659|pid:none) Euglena gracilis Nop58p mRNA, part... 91 2e-16
AY950661_1(AY950661|pid:none) Physarum polycephalum Nop56p mRNA,... 90 3e-16
AL590444_81(AL590444|pid:none) chromosome IV of strain GB-M1 of ... 89 4e-16
AC135505_12(AC135505|pid:none) Medicago truncatula clone mth2-24... 89 4e-16
BC056732_1(BC056732|pid:none) Danio rerio NOP56 ribonucleoprotei... 89 5e-16
CR940347_480(CR940347|pid:none) Theileria annulata strain Ankara... 89 5e-16
(Q4WYK9) RecName: Full=Nucleolar protein 58; 89 5e-16
AY648814_1(AY648814|pid:none) Danio rerio NOP56 mRNA, complete c... 89 5e-16
(A5E4V9) RecName: Full=Nucleolar protein 58; 89 6e-16
(Q1E1Q5) RecName: Full=Nucleolar protein 58; 88 8e-16
CP000678_1046(CP000678|pid:none) Methanobrevibacter smithii ATCC... 88 1e-15
BT059278_1(BT059278|pid:none) Salmo salar clone ssal-rgf-538-106... 87 1e-15
(A1D688) RecName: Full=Nucleolar protein 58; 87 1e-15
AC092212_41(AC092212|pid:none) Trypanosoma brucei chromosome 8 c... 87 1e-15
BT046076_1(BT046076|pid:none) Salmo salar clone ssal-rgf-541-014... 87 1e-15
(A2QE38) RecName: Full=Nucleolar protein 58; &AM270022_76(AM270... 87 2e-15
(Q753I4) RecName: Full=Nucleolar protein 58; &AE016819_561(AE01... 87 2e-15
AB024033_24(AB024033|pid:none) Arabidopsis thaliana genomic DNA,... 87 2e-15
CU638744_128(CU638744|pid:none) Podospora anserina genomic DNA c... 87 2e-15
AK226630_1(AK226630|pid:none) Arabidopsis thaliana mRNA for puta... 87 2e-15
FN319935_1(FN319935|pid:none) Schistosoma japonicum isolate Anhu... 86 3e-15
AE017345_334(AE017345|pid:none) Cryptococcus neoformans var. neo... 86 3e-15
FM992693_31(FM992693|pid:none) Candida dubliniensis CD36 chromos... 86 3e-15
(Q6BIX6) RecName: Full=Nucleolar protein 58; &CR382139_303(CR38... 86 4e-15
AC009894_10(AC009894|pid:none) Arabidopsis thaliana chromosome I... 86 4e-15
(A7TIF5) RecName: Full=Nucleolar protein 58; 86 5e-15
(Q59S06) RecName: Full=Nucleolar protein 58; 86 5e-15
CR382130_684(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 85 9e-15
(O94514) RecName: Full=Nucleolar protein 56; AltName: Full=Ribos... 85 9e-15
(A3LUT0) RecName: Full=Nucleolar protein 58; &CP000499_38(CP000... 84 1e-14
CP000588_43(CP000588|pid:none) Ostreococcus lucimarinus CCE9901 ... 84 1e-14
(Q12499) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle... 84 2e-14
(A6ZPE5) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle... 84 2e-14
(Q6CKR8) RecName: Full=Nucleolar protein 58; &CR382126_375(CR38... 84 2e-14
(O04656) RecName: Full=Putative nucleolar protein 5-3; AltName: ... 84 2e-14
AM920428_1468(AM920428|pid:none) Penicillium chrysogenum Wiscons... 84 2e-14
CU928180_634(CU928180|pid:none) Kluyveromyces thermotolerans str... 83 3e-14
CP001327_538(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 82 8e-14
FM992695_866(FM992695|pid:none) Candida dubliniensis CD36 chromo... 81 1e-13
AM910991_158(AM910991|pid:none) Plasmodium knowlesi strain H chr... 81 1e-13
CR382139_279(CR382139|pid:none) Debaryomyces hansenii strain CBS... 78 1e-12
AE000666_1194(AE000666|pid:none) Methanothermobacter thermautotr... 77 1e-12
AY051644_1(AY051644|pid:none) Drosophila melanogaster GM14238 fu... 77 2e-12
AE008384_1593(AE008384|pid:none) Methanosarcina mazei strain Goe... 76 3e-12
AE017199_335(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, co... 76 4e-12
CU928180_42(CU928180|pid:none) Kluyveromyces thermotolerans stra... 76 4e-12
CP000881_127(CP000881|pid:none) Hemiselmis andersenii chromosome... 76 4e-12
FN357415_18(FN357415|pid:none) Schistosoma mansoni genome sequen... 75 7e-12
CR380947_165(CR380947|pid:none) Candida glabrata strain CBS138 c... 74 2e-11
(Q12460) RecName: Full=Nucleolar protein 56; AltName: Full=Ribos... 74 2e-11
CR382124_510(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 74 2e-11
FN357539_11(FN357539|pid:none) Schistosoma mansoni genome sequen... 74 2e-11
AE016816_62(AE016816|pid:none) Ashbya gossypii (= Eremothecium g... 74 2e-11
BC090915_1(BC090915|pid:none) Danio rerio NOP56 ribonucleoprotei... 73 3e-11
AE004437_907(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 72 5e-11
AX972415_1(AX972415|pid:none) Sequence 3218 from Patent EP1104808. 71 1e-10
CP000102_1373(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 70 3e-10
AL590451_161(AL590451|pid:none) chromosome IX of strain GB-M1 of... 69 4e-10
AF083031_125(AF083031|pid:none) Guillardia theta nucleomorph chr... 69 7e-10
AE000782_2062(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 68 9e-10
AM180088_1636(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 67 2e-09
CR936257_1027(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 66 3e-09
AM114193_2828(AM114193|pid:none) Uncultured methanogenic archaeo... 66 3e-09
CP001365_1032(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 64 1e-08
AY596297_759(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 62 5e-08
CP000300_1443(CP000300|pid:none) Methanococcoides burtonii DSM 6... 62 8e-08
CP000780_510(CP000780|pid:none) Candidatus Methanoregula boonei ... 54 2e-05
AP005452_6(AP005452|pid:none) Oryza sativa Japonica Group genomi... 53 4e-05
CP000254_2189(CP000254|pid:none) Methanospirillum hungatei JF-1,... 48 0.001
AY007719_1(AY007719|pid:none) Bos taurus hypothetical protein 11... 47 0.002
AX972834_1(AX972834|pid:none) Sequence 3637 from Patent EP1104808. 46 0.005
AE017261_668(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 43 0.030
BA000011_357(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 42 0.066
AY553910_1(AY553910|pid:none) Brassica juncea putative preRNA pr... 41 0.15
FN357430_17(FN357430|pid:none) Schistosoma mansoni genome sequen... 39 0.43
AB168408_1(AB168408|pid:none) Macaca fascicularis testis cDNA cl... 38 0.95
CP000319_792(CP000319|pid:none) Nitrobacter hamburgensis X14, co... 38 1.2
AJ640086_1(AJ640086|pid:none) Wolinella succinogenes mRNA for ni... 37 1.6
BC084428_1(BC084428|pid:none) Xenopus laevis hypothetical LOC495... 36 3.6
CP001083_1175(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 35 6.2
AE016830_1511(AE016830|pid:none) Enterococcus faecalis V583, com... 35 6.2
>AC150800_1(AC150800|pid:none) Medicago truncatula chromosome 7 clone
mth2-77m9, complete sequence.
Length = 484
Score = 300 bits (769), Expect = 8e-80
Identities = 174/403 (43%), Positives = 249/403 (61%), Gaps = 9/403 (2%)
Frame = +3
Query: 459 QDSEEHKLIVECNQMAQEIQHEIYLIHKFVRERYSKKFPELESSVQNPLDYINCVKRIKN 638
+D E++LIVECN ++ +I++EI +IH F+R++Y KFPELES V +P+DY VK+I N
Sbjct: 88 EDDPEYQLIVECNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGN 147
Query: 639 ENDLINVQLNDLLPKSTIMVLLVTLSSTAGKNLTQEELMRVIDACDMGLELDLHKKNILH 818
E DL V L LLP + IMV+ VT S+T GK L +E L + I+ACD L LD KK +L
Sbjct: 148 EMDLTLVDLEGLLPSAIIMVVSVTASTTTGKPLPEEVLSKTIEACDRALALDSAKKKVLD 207
Query: 819 YLESRMTYIAPNLSVLMGSSIASKLIGIAGSIQQLANIPAGHLQTLGADKKALAGFSGMS 998
++ESRM YIAPN+S ++GS++A+KL+G AG + LA +PA ++Q LGA KK LAGFS +
Sbjct: 208 FVESRMGYIAPNVSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFS-TA 266
Query: 999 NRKFQMGLISQCDIVKKAPPFLQVKALRTLTGRVSIAARVDA-QQDSSFYGETGRQYRDE 1175
+F +G I Q +I + PP +++A R + + ++AARVD+ + D S G+TGR +DE
Sbjct: 267 TSQFHVGYIEQTEIFQTTPPSFRMRACRLVAAKSTLAARVDSIRGDPS--GKTGRSLKDE 324
Query: 1176 ILAKIEKWQEPPPQKQDKALPAPEEXXXXXXXXXXXXLYKQKYGVTDFQKAKNRMSFGVE 1355
I KIEKWQEPPP KQ K LP P+ K++Y +TD +K NRM FG+
Sbjct: 325 IHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGIP 384
Query: 1356 EKT---XXXXXXXXXXXXXXXXKVRLVAQERGILKK--KKLEQKNYGGSMTSASTSGL-A 1517
E++ K+R+ A + + K KK ++K+YG +S +TSGL +
Sbjct: 385 EESSLGDGLGEGYGMLGQAGSGKLRVSAGQSKLAAKVAKKFKEKSYG---SSGATSGLTS 441
Query: 1518 SVAITPVQGLQLSITQNIREQ--DNKTEKYFSSSSFKNKRKLN 1640
S+A TPVQG++LS Q Q YFS + +K + N
Sbjct: 442 SLAFTPVQGIELSNPQAHAHQLGSGTQSTYFSETGTFSKIQKN 484
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,936,017,236
Number of extensions: 34814649
Number of successful extensions: 96951
Number of sequences better than 10.0: 213
Number of HSP's gapped: 96605
Number of HSP's successfully gapped: 214
Length of query: 550
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 416
Effective length of database: 617,481,958
Effective search space: 256872494528
Effective search space used: 256872494528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
4 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
4 |
| CH (FL, L) |
0 |
| CF (FL, S) |
1 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |