Contig-U14923-1
Contig ID Contig-U14923-1
Contig update 2004. 6.11
Contig sequence
>Contig-U14923-1 (Contig-U14923-1Q) /CSM_Contig/Contig-U14923-1Q.Seq.d
ACTGTTGGCCTACTGGTTAAAAAAAATTTTCTAAAAAAACACACACACCT
ACTTTGATATATATTATATTTAATATTCAGAGTAAAAAATAAAAGAATTT
TTATTTGTGTTTTATTAAAAAAAAAAAGAAATAAAATAAAATAAAAAAAA
AAAAAAAAAAAAAAAAATGGTTGCACAAAATAATCAACAAAATAAAGATG
AAACAAAAGGTATTAAATCATATTATTGTTCAAAGATTGAAGAATTAGAA
ATTAAAGTTAATGAAAAAGCACAAGATTTAAGAAGATTAGAAGCACAAAG
AAATGAATTAAATAATCGTGTAAGAATGTTAAAAGAGGAATTACAATTAT
TGACTAACCCAGGATCACATGTAGCAGAGGTAGTCAAATTAATGGGAAAG
AATAAAGTATTGGTAAAGGTTAATCCAGAGGGTAAATTCGTGGTTGATAT
TGATCCAACCGTTGATATTGCCAAGTTAACACCATCAACCAGAGCTGCAT
TGAAACATGAAAGTTACACACTCCATAGAATCTTACCAAATAAAATTGAT
CCGTTGGTCAGTTTGATGAAAGTTGAAAAGATACCAGATTCAACCTATGA
TATGGTTGGTGGATTGGATAAACAAATCAAAGAGATCAAAGAAGTCATTG
AGTTGCCAATTAAACATCCAGAGTTATTTGAAAGTTTAGGTATCGCTCAA
CCAAAGGGTGTACTCTTGTATGGTCCACCAGGTACTGGTAAAACTTTGTT
AGCTCGTGCCCGTTGCTCATCATACCGATTGCACATTCATTAGAGTTAGT
GGTTCCGAATTGGTTCAAAAATATATTGGTGAAGGTAGTCGTATGGTTCG
TGAATTATTCATTATGGCTAGAGAACATGCTCCTTCAATCATTTTCATGG
ATGAAATCGATTCCATTGGTTCATCTCGTGGTGAATCTGGTTCCGGTGGT
GGTGATAGTGAAGTTCAACGTACTATGTTAGAGTTACTCAATCAATTGGA
TGGTTTTGAAAGTACTAAAAACATTAAAGTACTCATGTGTACAAATCGTA
TTGATATTTTAGATCCAGCTTTATTAAGACCAGGTAGAATTGATAGAAAA
ATTGAATTTCCAAATCCAGGTGATGCTGGTCGTTTAGATATTTTAAAGAT
CCATTCAAGAAAAATGAATTTAACAAGAGGAATTAACCTTAAAAAGATTT
CAGATAAAATGAATGGTGCTTCAGGTGCAGAATTAAAAGCAGTTTGTACT
GAAGCTGGTATGTATGCTCTTCGTGAAAGAAGAGTTCATGTATCTCAAGA
AGATTTTGAAATGGCAGTTTCTAAAGTTATGAAGAAGGATTCAGAACAAA
ATATGTCAATCAACAAATTATGGAAATAAAAAAAAAAAAAAAAAAAAACA
AAAGAAAGAAAAAAAATTGGTATATTTTTTTTTTTTTCCAGATTCTTTCT
TTTTAATATTAATATATATATATAACATAAAATGTTTTGTAAAAAAAAAA
ATAATAAAAAAAAATAATAGAAAAAAAAAAAAAATAATAAAAAAAAAAAA
ATAAAAAGAATTATACCTCAAAAAAAAAAAAAAAA

Gap no gap
Contig length 1585
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1666408
End point 1664854
Strand (PLUS/MINUS) MINUS
Number of clones 38
Number of EST 61
Link to clone list U14923
List of clone(s)

est1=SFA370F,1,152
est2=VFH603F,1,153
est3=SFH403F,7,151
est4=AFJ340F,14,151
est5=SFG792F,14,151
est6=VFF879F,14,153
est7=AFB296F,15,151
est8=AFC851F,16,151
est9=CFG364F,16,151
est10=SFA561F,16,152
est11=AFF418F,17,151
est12=AFH305F,17,151
est13=AFH387F,17,151
est14=AFJ867F,17,151
est15=AFK193F,17,151
est16=CHB582F,17,151
est17=VFC792F,18,153
est18=VFJ120F,18,153
est19=VFM140F,18,153
est20=VFN558F,18,153
est21=VFO626F,18,153
est22=AFL160F,22,151
est23=AFD596F,33,133
est24=AFO634F,36,151
est25=VSG549F,44,153
est26=SFA370X,57,599
est27=VFI701E,151,1369
est28=VFD462E,168,1369
est29=VFC792Z,612,1168
est30=AFF418Z,622,1157
est31=AFK193Z,623,1150
est32=AFJ867Z,625,1157
est33=AFB296Z,626,1157
est34=SFH403Z,627,1158
est35=AFO634Z,629,1173
est36=CHB582Z,629,1152
est37=SFG792Z,629,1165
est38=AFJ340Z,631,1152
est39=VFH603Z,631,1154
est40=AFC851Z,632,1155
est41=VFJ120Z,632,1167
est42=AFD596Z,636,1172
est43=AFH387Z,664,1170
est44=CFG364Z,668,1149
est45=SSF362Z,668,1391
est46=VFO626Z,669,1153
est47=SSJ132Z,676,1401
est48=VFM140Z,678,1172
est49=AFL160Z,681,1157
est50=VFF879Z,684,1154
est51=SSC519Z,716,1396
est52=SSK224Z,746,1395
est53=CFI175Z,756,1192
est54=SSB746Z,770,1392
est55=VSH860Z,780,1211
est56=AFH305Z,816,1171
est57=SFA370Z,822,1163
est58=SSK462E,835,1585
est59=VSE237Z,872,1376
est60=AFA316Z,965,1268
est61=VSH855Z,1114,1226
Translated Amino Acid sequence
llaywlkkif*knthtyfdiyyi*yse*kikeflfvfy*kkkeik*NKKKKKKKKMVAQN
NQQNKDETKGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNP
GSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPN
KIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLY
GPPGTGKTLLARARCSSYRLHIH*s*wfrigskiyw*r*sygs*iihyg*rtcsfnhfhg
*nrfhwfisw*iwfrww***sstyyvrvtqsigwf*ky*kh*sthvyksy*yfrssfikt
r*n**kn*isksr*cwsfryfkdpfkknefnkrn*p*kdfr*newcfrcrikssly*swy
vcss*kksscisrrf*ngsf*syeegfrtkyvnqqimeikkkkkknkrkkknwyiffffq
ilsf*y*yiyit*nvl*kkk**kkiiekkkk**kkknkknytskkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllvkknflkkhthll*yilylifrvknkrificvllkkkrnkik*kkkkkkkngctk
*stk*r*nkry*iillfkd*rirn*s**kstrfkkirstkk*ik*scknvkrgitiid*p
ritcsrgsqingke*sigkg*srg*irg*y*snr*ycqvntinqsciet*klhtp*nltk
*n*svgqfdes*kdtrfnl*ygwwig*tnqrdqrsh*van*tsrvi*kfryrstkgctlv
wstryw*nfvsscplliipiahslelvvpnwfknilvkvvvwfvnyslwlenmllqsfsw
mksiplvhlvvnlvpvvvivkfnvlc*sysinwmvlkvlktlkyscvqivlif*iqly*d
qvelieklnfqiqvmlvv*if*rsiqek*i*qeeltlkrfqik*mvlqvqn*kqfvlklv
cmlfvkeefmylkkilkwqflkl*rriqnkicqstnygnkkkkkkkqkkekklvyffffp
dsffliliyiynikcfvkkkiikknnrkkkkiikkkk*kelylkkkkk


Frame B:
llaywlkkif*knthtyfdiyyi*yse*kikeflfvfy*kkkeik*NKKKKKKKKMVAQN
NQQNKDETKGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNP
GSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPN
KIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLY
GPPGTGKTLLARARCSSYRLHIH*s*wfrigskiyw*r*sygs*iihyg*rtcsfnhfhg
*nrfhwfisw*iwfrww***sstyyvrvtqsigwf*ky*kh*sthvyksy*yfrssfikt
r*n**kn*isksr*cwsfryfkdpfkknefnkrn*p*kdfr*newcfrcrikssly*swy
vcss*kksscisrrf*ngsf*syeegfrtkyvnqqimeikkkkkknkrkkknwyiffffq
ilsf*y*yiyit*nvl*kkk**kkiiekkkk**kkknkknytskkkkk


Frame C:
cwptg*kkfskkthtptliyiifniqskk*knfylcfikkkkk*nkikkkkkkkkwlhki
inkikmkqkvlnhiivqrlkn*klklmkkhki*ed*khkemn*iiv*ec*krnyny*ltq
dhm*qr*sn*werikyw*rliqrvnswliliqplilps*hhqpelh*nmkvthsiesyqi
klirwsv**klkryqiqpmiwlvdwinkskrskkslscqlniqsylkv*vslnqrvyscm
vhqvlvklc*lvpvahhtdctfirvsgselvqkyigegsrmvrelfimarehapsiifmd
eidsigssrgesgsgggdsevqrtmlellnqldgfestknikvlmctnridildpallrp
gridrkiefpnpgdagrldilkihsrkmnltrginlkkisdkmngasgaelkavcteagm
yalrerrvhvsqedfemavskvmkkdseqnmsinklwk*kkkkkktkerkkigiffffsr
fflfniniyi*hkmfckkknnkkk**kkkknnkkkkikriipqkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U14923-1 (Contig-U14923-1Q)
/CSM_Contig/Contig-U14923-1Q.Seq.d
(1585 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14923-1 (Contig-U14923-1Q) /CSM_Contig/Conti... 2399 0.0
Contig-U14936-1 (Contig-U14936-1Q) /CSM_Contig/Conti... 88 5e-17
Contig-U16043-1 (Contig-U16043-1Q) /CSM_Contig/Conti... 84 8e-16
Contig-U13989-1 (Contig-U13989-1Q) /CSM_Contig/Conti... 72 3e-12
Contig-U15589-1 (Contig-U15589-1Q) /CSM_Contig/Conti... 62 3e-09
Contig-U13522-1 (Contig-U13522-1Q) /CSM_Contig/Conti... 62 3e-09
Contig-U16415-1 (Contig-U16415-1Q) /CSM_Contig/Conti... 54 7e-07
Contig-U05055-1 (Contig-U05055-1Q) /CSM_Contig/Conti... 52 3e-06
Contig-U11744-1 (Contig-U11744-1Q) /CSM_Contig/Conti... 50 1e-05
Contig-U11344-1 (Contig-U11344-1Q) /CSM_Contig/Conti... 50 1e-05

>Contig-U14923-1 (Contig-U14923-1Q) /CSM_Contig/Contig-U14923-1Q.Seq.d
Length = 1585

Score = 2399 bits (1210), Expect = 0.0
Identities = 1210/1210 (100%)
Strand = Plus / Plus


Query: 168 tggttgcacaaaataatcaacaaaataaagatgaaacaaaaggtattaaatcatattatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tggttgcacaaaataatcaacaaaataaagatgaaacaaaaggtattaaatcatattatt 227


Query: 228 gttcaaagattgaagaattagaaattaaagttaatgaaaaagcacaagatttaagaagat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gttcaaagattgaagaattagaaattaaagttaatgaaaaagcacaagatttaagaagat 287


Query: 288 tagaagcacaaagaaatgaattaaataatcgtgtaagaatgttaaaagaggaattacaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tagaagcacaaagaaatgaattaaataatcgtgtaagaatgttaaaagaggaattacaat 347


Query: 348 tattgactaacccaggatcacatgtagcagaggtagtcaaattaatgggaaagaataaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tattgactaacccaggatcacatgtagcagaggtagtcaaattaatgggaaagaataaag 407


Query: 408 tattggtaaaggttaatccagagggtaaattcgtggttgatattgatccaaccgttgata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tattggtaaaggttaatccagagggtaaattcgtggttgatattgatccaaccgttgata 467


Query: 468 ttgccaagttaacaccatcaaccagagctgcattgaaacatgaaagttacacactccata 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttgccaagttaacaccatcaaccagagctgcattgaaacatgaaagttacacactccata 527


Query: 528 gaatcttaccaaataaaattgatccgttggtcagtttgatgaaagttgaaaagataccag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaatcttaccaaataaaattgatccgttggtcagtttgatgaaagttgaaaagataccag 587


Query: 588 attcaacctatgatatggttggtggattggataaacaaatcaaagagatcaaagaagtca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 attcaacctatgatatggttggtggattggataaacaaatcaaagagatcaaagaagtca 647


Query: 648 ttgagttgccaattaaacatccagagttatttgaaagtttaggtatcgctcaaccaaagg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttgagttgccaattaaacatccagagttatttgaaagtttaggtatcgctcaaccaaagg 707


Query: 708 gtgtactcttgtatggtccaccaggtactggtaaaactttgttagctcgtgcccgttgct 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gtgtactcttgtatggtccaccaggtactggtaaaactttgttagctcgtgcccgttgct 767


Query: 768 catcataccgattgcacattcattagagttagtggttccgaattggttcaaaaatatatt 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 catcataccgattgcacattcattagagttagtggttccgaattggttcaaaaatatatt 827


Query: 828 ggtgaaggtagtcgtatggttcgtgaattattcattatggctagagaacatgctccttca 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ggtgaaggtagtcgtatggttcgtgaattattcattatggctagagaacatgctccttca 887


Query: 888 atcattttcatggatgaaatcgattccattggttcatctcgtggtgaatctggttccggt 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 atcattttcatggatgaaatcgattccattggttcatctcgtggtgaatctggttccggt 947


Query: 948 ggtggtgatagtgaagttcaacgtactatgttagagttactcaatcaattggatggtttt 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ggtggtgatagtgaagttcaacgtactatgttagagttactcaatcaattggatggtttt 1007


Query: 1008 gaaagtactaaaaacattaaagtactcatgtgtacaaatcgtattgatattttagatcca 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 gaaagtactaaaaacattaaagtactcatgtgtacaaatcgtattgatattttagatcca 1067


Query: 1068 gctttattaagaccaggtagaattgatagaaaaattgaatttccaaatccaggtgatgct 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 gctttattaagaccaggtagaattgatagaaaaattgaatttccaaatccaggtgatgct 1127


Query: 1128 ggtcgtttagatattttaaagatccattcaagaaaaatgaatttaacaagaggaattaac 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 ggtcgtttagatattttaaagatccattcaagaaaaatgaatttaacaagaggaattaac 1187


Query: 1188 cttaaaaagatttcagataaaatgaatggtgcttcaggtgcagaattaaaagcagtttgt 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 cttaaaaagatttcagataaaatgaatggtgcttcaggtgcagaattaaaagcagtttgt 1247


Query: 1248 actgaagctggtatgtatgctcttcgtgaaagaagagttcatgtatctcaagaagatttt 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 actgaagctggtatgtatgctcttcgtgaaagaagagttcatgtatctcaagaagatttt 1307


Query: 1308 gaaatggcagtttctaaagttatgaagaaggattcagaacaaaatatgtcaatcaacaaa 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 gaaatggcagtttctaaagttatgaagaaggattcagaacaaaatatgtcaatcaacaaa 1367


Query: 1368 ttatggaaat 1377
||||||||||
Sbjct: 1368 ttatggaaat 1377


Score = 153 bits (77), Expect = 1e-36
Identities = 77/77 (100%)
Strand = Plus / Plus


Query: 40 cacacacacctactttgatatatattatatttaatattcagagtaaaaaataaaagaatt 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 cacacacacctactttgatatatattatatttaatattcagagtaaaaaataaaagaatt 99


Query: 100 tttatttgtgttttatt 116
|||||||||||||||||
Sbjct: 100 tttatttgtgttttatt 116


Score = 105 bits (53), Expect = 2e-22
Identities = 53/53 (100%)
Strand = Plus / Plus


Query: 1438 ccagattctttctttttaatattaatatatatatataacataaaatgttttgt 1490
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1438 ccagattctttctttttaatattaatatatatatataacataaaatgttttgt 1490


Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtt 18
||||||||||||||||||
Sbjct: 1 actgttggcctactggtt 18


>Contig-U14936-1 (Contig-U14936-1Q) /CSM_Contig/Contig-U14936-1Q.Seq.d
Length = 1461

Score = 87.7 bits (44), Expect = 5e-17
Identities = 56/60 (93%)
Strand = Plus / Plus


Query: 700 accaaagggtgtactcttgtatggtccaccaggtactggtaaaactttgttagctcgtgc 759
||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 622 accaaagggtgtattattgtatggtccaccaggtactggtaagacattgttagctcgtgc 681


Score = 38.2 bits (19), Expect = 0.041
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1245 tgtactgaagctggtatgt 1263
|||||||||||||||||||
Sbjct: 1163 tgtactgaagctggtatgt 1181


Score = 32.2 bits (16), Expect = 2.5
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 897 atggatgaaatcgattccattggt 920
||||||||||||||| | ||||||
Sbjct: 818 atggatgaaatcgatgcaattggt 841


>Contig-U16043-1 (Contig-U16043-1Q) /CSM_Contig/Contig-U16043-1Q.Seq.d
Length = 1071

Score = 83.8 bits (42), Expect = 8e-16
Identities = 54/58 (93%)
Strand = Plus / Plus


Query: 949 gtggtgatagtgaagttcaacgtactatgttagagttactcaatcaattggatggttt 1006
|||||||||| || || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 513 gtggtgatagagaggtgcaacgtacaatgttagagttactcaatcaattggatggttt 570


Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus


Query: 700 accaaagggtgtactcttgtatggtccaccaggtactgg 738
||||||||| ||| | ||||||||||||||||||||||
Sbjct: 266 accaaagggagtattgatgtatggtccaccaggtactgg 304


Score = 40.1 bits (20), Expect = 0.010
Identities = 29/32 (90%)
Strand = Plus / Plus


Query: 1231 aattaaaagcagtttgtactgaagctggtatg 1262
||||||||||||||||| ||||||||||||
Sbjct: 795 aattaaaagcagtttgtgtcgaagctggtatg 826


Score = 32.2 bits (16), Expect = 2.5
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 608 ggtggattggataaacaaat 627
|||||||| |||||||||||
Sbjct: 174 ggtggattagataaacaaat 193


Score = 30.2 bits (15), Expect = 9.9
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 1044 aatcgtattgatattttagatcc 1066
|||||||||||||| || |||||
Sbjct: 608 aatcgtattgatatcttggatcc 630


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,753
Number of Sequences: 8402
Number of extensions: 35753
Number of successful extensions: 5165
Number of sequences better than 10.0: 1082
length of query: 1585
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1569
effective length of database: 7,941,110
effective search space: 12459601590
effective search space used: 12459601590
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1. 5
Homology vs DNA
Query= Contig-U14923-1 (Contig-U14923-1Q) /CSM_Contig/Contig-U14923-1Q.Seq.d
(1585 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C91943) Dictyostelium discoideum slug cDNA, clone SSC519. 1273 0.0 1
(L16579) Dictyostelium discoideum HIV1 TAT-binding protein h... 1225 0.0 2
(C92801) Dictyostelium discoideum slug cDNA, clone SSF362. 1217 0.0 2
(C91302) Dictyostelium discoideum slug cDNA, clone SSK224. 1211 0.0 2
(BJ414076) Dictyostelium discoideum cDNA clone:ddv18b01, 5' ... 1176 0.0 2
(BJ412276) Dictyostelium discoideum cDNA clone:ddv7l16, 5' e... 1176 0.0 2
(BJ432198) Dictyostelium discoideum cDNA clone:ddv18b01, 3' ... 1112 0.0 3
(BJ430546) Dictyostelium discoideum cDNA clone:ddv7l16, 3' e... 1086 0.0 4
(C90774) Dictyostelium discoideum slug cDNA, clone SSJ132. 1043 0.0 3
(AU037308) Dictyostelium discoideum slug cDNA, clone SSB746. 983 0.0 3
(BJ346220) Dictyostelium discoideum cDNA clone:dda30c10, 3' ... 819 0.0 3
(BJ341967) Dictyostelium discoideum cDNA clone:dda8o23, 3' e... 817 0.0 2
(BJ430323) Dictyostelium discoideum cDNA clone:ddv6h23, 3' e... 787 0.0 2
(BJ339938) Dictyostelium discoideum cDNA clone:dda11d06, 3' ... 781 0.0 2
(BJ344809) Dictyostelium discoideum cDNA clone:dda20f18, 3' ... 787 0.0 2
(BJ340810) Dictyostelium discoideum cDNA clone:dda3o24, 3' e... 781 0.0 2
(BJ345175) Dictyostelium discoideum cDNA clone:dda21i23, 3' ... 773 0.0 2
(BJ377756) Dictyostelium discoideum cDNA clone:ddc25c21, 3' ... 781 0.0 2
(BJ434153) Dictyostelium discoideum cDNA clone:ddv16e02, 3' ... 783 0.0 2
(BJ341416) Dictyostelium discoideum cDNA clone:dda6f14, 3' e... 783 0.0 2
(BJ400793) Dictyostelium discoideum cDNA clone:dds14h23, 3' ... 773 0.0 2
(BJ344479) Dictyostelium discoideum cDNA clone:dda19p09, 3' ... 777 0.0 2
(BJ432569) Dictyostelium discoideum cDNA clone:ddv19g05, 3' ... 775 0.0 2
(BJ400840) Dictyostelium discoideum cDNA clone:dds15f02, 3' ... 765 0.0 2
(AU262962) Dictyostelium discoideum vegetative cDNA clone:VS... 981 0.0 1
(BJ343032) Dictyostelium discoideum cDNA clone:dda15n21, 3' ... 785 0.0 2
(BJ436179) Dictyostelium discoideum cDNA clone:ddv30c08, 3' ... 781 0.0 2
(BJ372696) Dictyostelium discoideum cDNA clone:ddc13p15, 3' ... 775 0.0 2
(BJ434924) Dictyostelium discoideum cDNA clone:ddv25o09, 3' ... 787 0.0 2
(BJ428704) Dictyostelium discoideum cDNA clone:ddv12n20, 3' ... 783 0.0 2
(BJ345400) Dictyostelium discoideum cDNA clone:dda23g15, 3' ... 787 0.0 3
(BJ375196) Dictyostelium discoideum cDNA clone:ddc17e19, 3' ... 860 0.0 1
(AU268085) Dictyostelium discoideum vegetative cDNA clone:VS... 765 0.0 2
(BJ342846) Dictyostelium discoideum cDNA clone:dda15j01, 3' ... 678 0.0 1
(BJ398695) Dictyostelium discoideum cDNA clone:dds1l17, 3' e... 674 0.0 1
(BJ342702) Dictyostelium discoideum cDNA clone:dda1p03, 3' e... 603 e-168 1
(AU074354) Dictyostelium discoideum slug cDNA, clone SSK462. 476 e-129 1
(AX489025) Sequence 6325 from Patent WO02053728. 133 1e-99 7
(C91574) Dictyostelium discoideum slug cDNA, clone SSK462. 246 4e-84 2
(AL407935) T7 end of clone AV0AA005E11 of library AV0AA from... 137 2e-78 4
(FC814046) Sr_pASP6_016h14_SP6 S. ratti mixed stage pAMP Str... 117 6e-74 7
(FC813952) Sr_pASP6_016c13_SP6 S. ratti mixed stage pAMP Str... 117 7e-74 7
(FD455132) EGGAZ61TR Haematobia irritans eggs Haematobia irr... 123 4e-72 5
(AR550161) Sequence 5292 from patent US 6747137. 125 3e-71 4
(FD456317) EGGB701TR Haematobia irritans eggs Haematobia irr... 123 1e-65 6
(FE243523) CAPG7689.rev CAPG Naegleria gruberi amoeba stage ... 117 6e-62 5
(X77914) P.falciparum TBP mRNA. 80 1e-61 8
(BG101557) QW25 Apis mellifera larval caste mRNA Apis mellif... 82 5e-61 6
(FD456316) EGGB701TF Haematobia irritans eggs Haematobia irr... 123 2e-59 6
(AY737534) Toxoptera citricida putative 26S protease regulat... 72 8e-58 9
(BI514479) BB160015A20H10.5 Bee Brain Normalized Library, BB... 86 1e-57 6
(FD457815) EGGBG34TR Haematobia irritans eggs Haematobia irr... 115 3e-55 5
(FE234480) CAPG2847.rev CAPG Naegleria gruberi amoeba stage ... 125 3e-53 4
(FE256436) CAPH6115.rev CAPH Naegleria gruberi amoeba stage ... 125 3e-53 4
(FC781463) CBGC13095.fwd CBGC Lottia gigantea 15h 18h embryo... 103 6e-52 7
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 80 1e-51 9
(AZ926397) 476.dis06d12.s1 Saccharomyces castellii NRRL Y-12... 96 2e-51 4
(FE262441) CAZO2621.rev CAZO Naegleria gruberi Flagellate St... 117 5e-51 4
(FE255092) CAPH5398.rev CAPH Naegleria gruberi amoeba stage ... 117 7e-51 4
(FC820019) Sr_pAMT7_016h14_T7 S. ratti mixed stage pAMP Stro... 109 7e-51 4
(EH010487) USDA-FP_183580 Lysiphlebus testaceipes adult whol... 109 9e-51 6
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **... 80 4e-49 8
(EL429052) CHCM8274.b1_C06.ab1 CHC(LMS) Texas blueweed Helia... 96 4e-48 8
(U41812) Naegleria fowleri Tat-binding protein homolog mRNA,... 76 2e-47 6
(AY693135) Saccharomyces cerevisiae clone FLH112905.01X YGL0... 80 2e-46 6
(EA396806) Sequence 45630 from patent US 7314974. 80 2e-46 6
(AX830050) Sequence 770 from Patent WO03072602. 80 2e-46 6
(AX819020) Sequence 770 from Patent EP1338608. 80 2e-46 6
(AX595354) Sequence 1008 from Patent EP1258494. 80 2e-46 6
(FD457814) EGGBG34TF Haematobia irritans eggs Haematobia irr... 115 2e-46 4
(FC819902) Sr_pAMT7_016c13_T7 S. ratti mixed stage pAMP Stro... 94 3e-46 4
(BH147344) ENTPF31TF Entamoeba histolytica Sheared DNA Entam... 82 4e-46 4
(DT761312) EST1195161 Aquilegia cDNA library Aquilegia formo... 84 5e-46 7
(X66400) S.cerevisiae SUG1 gene. 80 8e-46 6
(DY922301) CHAY5555.b1_F21.ab1 CHA(XYZ) common wild sunflowe... 98 8e-46 7
(CB979660) CAB70001_IIIaF_E11 Cabernet Sauvignon Berry Post-... 86 1e-45 7
(L01626) Saccharomyces cerevisiae Tat-binding protein (TBY-1... 80 1e-45 6
(AX653352) Sequence 3222 from Patent WO03000898. 100 1e-45 5
(Z72570) S.cerevisiae chromosome VII reading frame ORF YGL048c. 80 2e-45 6
(AB052887) Oryza sativa mRNA for 26S proteasome ATPase subun... 100 3e-45 5
(AB033537) Oryza sativa Japonica Group OsRPT6 mRNA for 26S p... 100 3e-45 5
(AK106217) Oryza sativa Japonica Group cDNA clone:001-208-H0... 100 4e-45 5
(AK061762) Oryza sativa Japonica Group cDNA clone:001-039-B0... 100 4e-45 5
(EE625063) CHWS3470.b1_K03.ab1 CHW(LMS) silverleaf sunflower... 88 4e-45 9
(AM875118) Venerupis (Ruditapes) philippinarum EST, 5' end s... 117 6e-45 5
(EE091708) S7B01419 Berries 14mm with GA3 (VvS7) Vitis vinif... 86 1e-44 7
(AK102286) Oryza sativa Japonica Group cDNA clone:J033089I16... 100 1e-44 6
(EH774631) CNSM6966.b1_K13.ab1 CNS(LMS) yellow starthistle C... 98 4e-44 5
(DT745675) EST1179524 Aquilegia cDNA library Aquilegia formo... 84 4e-44 5
(DR915648) EST1107187 Aquilegia cDNA library Aquilegia formo... 76 1e-43 7
(EV232741) VV_PEb03h01.b1 Vitis vinifera cv. perlette LibB V... 86 1e-43 7
(ES643672) NVPQ874TR NVPP Nasonia vitripennis cDNA, mRNA seq... 84 2e-43 6
(AL403948) T3 end of clone AT0AA012A06 of library AT0AA from... 86 2e-43 6
(CL965865) OsIFCC012923 Oryza sativa Express Library Oryza s... 92 3e-43 5
(FG936362) UCRVU09_CCNT14598_b1 Cowpea UCR 707 Mixed Tissue ... 72 1e-42 7
(DV605927) EST1208923 Glossina morsitans morsitans Fat body ... 64 1e-42 7
(EE593289) EgTEST0003 Elaeis guineensis Lambda ZAP-II Expres... 82 2e-42 5
(BX538350) Cryptosporidium parvum chromosome 6, complete seq... 84 2e-42 13
(ES395318) MUS05-E20.x1d-t SHGC-MUS Mytilus californianus cD... 84 2e-42 5
(BI510534) BB170013B10F04.5 Bee Brain Normalized/Subtracted ... 84 2e-42 5

>(C91943) Dictyostelium discoideum slug cDNA, clone SSC519.
Length = 676

Score = 1273 bits (642), Expect = 0.0
Identities = 648/650 (99%)
Strand = Plus / Plus


Query: 728 ccaggtactggtaaaactttgttagctcgtgcccgttgctcatcataccgattgcacatt 787
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 21 ccaggtactggtaaaactttgttagctcgtgcccgttgctcatcatcccgattgcccatt 80


Query: 788 cattagagttagtggttccgaattggttcaaaaatatattggtgaaggtagtcgtatggt 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 cattagagttagtggttccgaattggttcaaaaatatattggtgaaggtagtcgtatggt 140


Query: 848 tcgtgaattattcattatggctagagaacatgctccttcaatcattttcatggatgaaat 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tcgtgaattattcattatggctagagaacatgctccttcaatcattttcatggatgaaat 200


Query: 908 cgattccattggttcatctcgtggtgaatctggttccggtggtggtgatagtgaagttca 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgattccattggttcatctcgtggtgaatctggttccggtggtggtgatagtgaagttca 260


Query: 968 acgtactatgttagagttactcaatcaattggatggttttgaaagtactaaaaacattaa 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgtactatgttagagttactcaatcaattggatggttttgaaagtactaaaaacattaa 320


Query: 1028 agtactcatgtgtacaaatcgtattgatattttagatccagctttattaagaccaggtag 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtactcatgtgtacaaatcgtattgatattttagatccagctttattaagaccaggtag 380


Query: 1088 aattgatagaaaaattgaatttccaaatccaggtgatgctggtcgtttagatattttaaa 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattgatagaaaaattgaatttccaaatccaggtgatgctggtcgtttagatattttaaa 440


Query: 1148 gatccattcaagaaaaatgaatttaacaagaggaattaaccttaaaaagatttcagataa 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatccattcaagaaaaatgaatttaacaagaggaattaaccttaaaaagatttcagataa 500


Query: 1208 aatgaatggtgcttcaggtgcagaattaaaagcagtttgtactgaagctggtatgtatgc 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgaatggtgcttcaggtgcagaattaaaagcagtttgtactgaagctggtatgtatgc 560


Query: 1268 tcttcgtgaaagaagagttcatgtatctcaagaagattttgaaatggcagtttctaaagt 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttcgtgaaagaagagttcatgtatctcaagaagattttgaaatggcagtttctaaagt 620


Query: 1328 tatgaagaaggattcagaacaaaatatgtcaatcaacaaattatggaaat 1377
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgaagaaggattcagaacaaaatatgtcaatcaacaaattatggaaat 670

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,697,644,325
Number of extensions: 137057052
Number of successful extensions: 36246620
Number of sequences better than 10.0: 7492
Length of query: 1585
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1561
Effective length of database: 97,308,875,965
Effective search space: 151899155381365
Effective search space used: 151899155381365
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.13
Homology vs Protein
Query= Contig-U14923-1 (Contig-U14923-1Q) /CSM_Contig/Contig-U14923-1Q.Seq.d
(1585 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P34124) RecName: Full=26S protease regulatory subunit 8; AltNam... 390 0.0
AF123395_1(AF123395|pid:none) Arabidopsis thaliana 26S proteasom... 310 e-164
AK226206_1(AK226206|pid:none) Arabidopsis thaliana mRNA for 26S ... 310 e-163
EU162611_6(EU162611|pid:none) Capsella rubella clone contig46 BA... 310 e-163
AB033537_1(AB033537|pid:none) Oryza sativa Japonica Group OsRPT6... 310 e-163
BT054955_1(BT054955|pid:none) Zea mays full-length cDNA clone ZM... 308 e-162
AB035272_1(AB035272|pid:none) Matricaria chamomilla McTBP1 mRNA ... 308 e-162
FB781822_1(FB781822|pid:none) Sequence 1095 from Patent WO200803... 309 e-162
BC078375_1(BC078375|pid:none) Danio rerio proteasome (prosome, m... 303 e-161
(O18413) RecName: Full=26S protease regulatory subunit 8; &AE01... 306 e-160
(P62194) RecName: Full=26S protease regulatory subunit 8; AltNam... 303 e-160
BT019726_1(BT019726|pid:none) Synthetic construct Homo sapiens p... 303 e-160
BT075406_1(BT075406|pid:none) Osmerus mordax clone omor-eva-504-... 302 e-160
D44467_1(D44467|pid:none) Homo sapiens mRNA for 26S proteasome s... 303 e-159
U97538_1(U97538|pid:none) Drosophila melanogaster DUG mRNA, comp... 306 e-159
AY011124_1(AY011124|pid:none) Dactylis glomerata 26S proteasome ... 302 e-159
AK010505_1(AK010505|pid:none) Mus musculus ES cells cDNA, RIKEN ... 300 e-159
(Q25544) RecName: Full=26S protease regulatory subunit 8 homolog... 303 e-159
L38810_1(L38810|pid:none) Homo sapiens thyroid receptor interact... 300 e-159
AB171905_1(AB171905|pid:none) Macaca fascicularis brain cDNA clo... 301 e-159
CR859252_1(CR859252|pid:none) Pongo abelii mRNA; cDNA DKFZp469N2... 300 e-159
AE014297_4820(AE014297|pid:none) Drosophila melanogaster chromos... 304 e-158
AK065619_1(AK065619|pid:none) Oryza sativa Japonica Group cDNA c... 305 e-157
CP001325_312(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 290 e-155
CR382130_688(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 286 e-154
AB000493_1(AB000493|pid:none) Rattus norvegicus gene for proteas... 303 e-154
AB171188_1(AB171188|pid:none) Macaca fascicularis brain cDNA clo... 300 e-153
BX538350_38(BX538350|pid:none) Cryptosporidium parvum chromosome... 296 e-153
CR382135_420(CR382135|pid:none) Debaryomyces hansenii strain CBS... 285 e-152
AE017350_96(AE017350|pid:none) Cryptococcus neoformans var. neof... 284 e-152
T27048(T27048) hypothetical protein Y49E10.1 - Caenorhabditis el... 296 e-152
FM992689_795(FM992689|pid:none) Candida dubliniensis CD36 chromo... 287 e-151
FN320332_1(FN320332|pid:none) Schistosoma japonicum isolate Anhu... 288 e-151
CR954203_112(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 298 e-150
DQ206972_1(DQ206972|pid:none) Schistosoma mansoni 26S proteasome... 290 e-147
FN375083_1(FN375083|pid:none) Schistosoma mansoni genome sequenc... 274 e-147
(Q01939) RecName: Full=26S protease regulatory subunit 8 homolog... 289 e-147
DQ864866_1(DQ864866|pid:none) Pfiesteria piscicida clone ppi-5p-... 289 e-147
CU633898_26(CU633898|pid:none) Podospora anserina genomic DNA ch... 290 e-147
X66400_1(X66400|pid:none) S.cerevisiae SUG1 gene. 289 e-147
CU928179_930(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 281 e-146
AP007172_18(AP007172|pid:none) Aspergillus oryzae RIB40 genomic ... 286 e-144
AF099922_2(AF099922|pid:none) Caenorhabditis elegans cosmid F56F... 288 e-143
AF099922_3(AF099922|pid:none) Caenorhabditis elegans cosmid F56F... 288 e-143
AL590451_186(AL590451|pid:none) chromosome IX of strain GB-M1 of... 280 e-139
AM494972_460(AM494972|pid:none) Leishmania braziliensis chromoso... 279 e-135
AM502254_679(AM502254|pid:none) Leishmania infantum chromosome 36. 281 e-134
AF227504_1(AF227504|pid:none) Trypanosoma brucei proteasome regu... 277 e-132
AB209036_1(AB209036|pid:none) Homo sapiens mRNA for proteasome 2... 287 e-124
BC030840_1(BC030840|pid:none) Mus musculus protease (prosome, ma... 287 e-121
EF678275_1(EF678275|pid:none) Picea sitchensis clone WS02911_P12... 306 e-120
AF035309_1(AF035309|pid:none) Homo sapiens clone 23598 mRNA, com... 303 e-117
CP000883_64(CP000883|pid:none) Hemiselmis andersenii chromosome ... 239 e-107
AF083031_110(AF083031|pid:none) Guillardia theta nucleomorph chr... 217 e-100
AF475120_1(AF475120|pid:none) Triticum aestivum 26S proteasome A... 271 1e-96
(Q8TX03) RecName: Full=Proteasome-activating nucleotidase; AltNa... 196 1e-86
(Q8U4H3) RecName: Full=Proteasome-activating nucleotidase; AltNa... 200 3e-86
(O57940) RecName: Full=Proteasome-activating nucleotidase; AltNa... 197 2e-85
CP000743_1018(CP000743|pid:none) Methanococcus aeolicus Nankai-3... 181 5e-85
(Q58576) RecName: Full=Proteasome-activating nucleotidase; AltNa... 196 3e-84
(Q5JHS5) RecName: Full=Proteasome-activating nucleotidase; AltNa... 197 1e-83
FN315179_1(FN315179|pid:none) Schistosoma japonicum isolate Anhu... 271 1e-83
(Q9V287) RecName: Full=Proteasome-activating nucleotidase; AltNa... 194 4e-83
(O28303) RecName: Full=Proteasome-activating nucleotidase; AltNa... 197 7e-83
EF575938_1(EF575938|pid:none) Oryza sativa (indica cultivar-grou... 310 1e-82
AF115331_1(AF115331|pid:none) Amblyomma americanum 26S protease ... 304 3e-81
CP000678_354(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 184 7e-80
CP000867_1013(CP000867|pid:none) Methanococcus maripaludis C6, c... 185 6e-79
AE017350_312(AE017350|pid:none) Cryptococcus neoformans var. neo... 180 8e-79
(P48601) RecName: Full=26S protease regulatory subunit 4; AltNam... 195 1e-78
(O16368) RecName: Full=Probable 26S protease regulatory subunit ... 194 1e-78
DQ440313_1(DQ440313|pid:none) Aedes aegypti clone AET-397 26S pr... 195 2e-78
FN318152_1(FN318152|pid:none) Schistosoma japonicum isolate Anhu... 195 2e-78
(A4G0S4) RecName: Full=Proteasome-activating nucleotidase; AltNa... 183 3e-78
(Q6LWR0) RecName: Full=Proteasome-activating nucleotidase; AltNa... 182 3e-78
CP000477_446(CP000477|pid:none) Methanosaeta thermophila PT, com... 180 4e-78
(Q0W257) RecName: Full=Proteasome-activating nucleotidase; AltNa... 183 5e-78
CP000575_899(CP000575|pid:none) Staphylothermus marinus F1, comp... 179 5e-78
(P62191) RecName: Full=26S protease regulatory subunit 4; AltNam... 193 7e-78
AK222668_1(AK222668|pid:none) Homo sapiens mRNA for proteasome 2... 193 7e-78
BT020983_1(BT020983|pid:none) Bos taurus proteasome (prosome, ma... 193 7e-78
A44468(A44468;B44468)26S proteasome regulatory chain 4 [validate... 193 7e-78
BC067741_1(BC067741|pid:none) Homo sapiens proteasome (prosome, ... 193 7e-78
AB169562_1(AB169562|pid:none) Macaca fascicularis brain cDNA, cl... 191 1e-77
(Q2FQ56) RecName: Full=Proteasome-activating nucleotidase; AltNa... 180 1e-77
CP000102_1167(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 189 1e-77
(A6VHR1) RecName: Full=Proteasome-activating nucleotidase; AltNa... 181 1e-77
CR382132_107(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 195 3e-77
CP000559_1165(CP000559|pid:none) Methanocorpusculum labreanum Z,... 193 3e-77
AY814884_1(AY814884|pid:none) Schistosoma japonicum SJCHGC09284 ... 188 4e-77
AY241962_1(AY241962|pid:none) Dermacentor variabilis 26S proteas... 169 6e-77
AL935145_2(AL935145|pid:none) Zebrafish DNA sequence from clone ... 192 7e-77
(Q90732) RecName: Full=26S protease regulatory subunit 4; AltNam... 191 7e-77
AE008384_1006(AE008384|pid:none) Methanosarcina mazei strain Goe... 188 7e-77
(Q8PY58) RecName: Full=Proteasome-activating nucleotidase; AltNa... 188 7e-77
EF676518_1(EF676518|pid:none) Picea sitchensis clone WS02740_E13... 190 1e-76
CP000493_1096(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 174 1e-76
AE010299_4158(AE010299|pid:none) Methanosarcina acetivorans str.... 188 1e-76
FN314957_1(FN314957|pid:none) Schistosoma japonicum isolate Anhu... 186 1e-76
(Q8TI88) RecName: Full=Proteasome-activating nucleotidase; AltNa... 188 1e-76
BC154336_1(BC154336|pid:none) Danio rerio proteasome (prosome, m... 191 2e-76
BC049471_1(BC049471|pid:none) Danio rerio proteasome (prosome, m... 191 2e-76
(O64982) RecName: Full=26S protease regulatory subunit 7; AltNam... 189 2e-76
BC054287_1(BC054287|pid:none) Xenopus laevis protease (prosome, ... 191 3e-76
BT078547_1(BT078547|pid:none) Lepeophtheirus salmonis Pacific fo... 190 3e-76
CP000099_606(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 187 3e-76
AY208828_1(AY208828|pid:none) Rhipicephalus appendiculatus prote... 169 3e-76
AJ871357_1(AJ871357|pid:none) Nyctotherus ovalis partial gene fo... 285 3e-76
AE014185_79(AE014185|pid:none) Plasmodium falciparum 3D7 chromos... 189 4e-76
AE016818_336(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 193 4e-76
BT043952_1(BT043952|pid:none) Salmo salar clone HM4_3128 proteas... 190 4e-76
FN357312_3(FN357312|pid:none) Schistosoma mansoni genome sequenc... 188 4e-76
BC073644_1(BC073644|pid:none) Xenopus laevis similar to proteaso... 169 4e-76
BT083190_1(BT083190|pid:none) Anoplopoma fimbria clone afim-evh-... 173 4e-76
BT042644_1(BT042644|pid:none) Zea mays full-length cDNA clone ZM... 192 4e-76
AY243360_1(AY243360|pid:none) Lactuca sativa clone 2 26S proteas... 189 5e-76
BC064227_1(BC064227|pid:none) Xenopus tropicalis proteasome (pro... 171 5e-76
FN392322_761(FN392322|pid:none) Pichia pastoris GS115 chromosome... 196 8e-76
CP000496_248(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 193 8e-76
BT076124_1(BT076124|pid:none) Caligus rogercresseyi clone crog-e... 190 1e-75
BC041186_1(BC041186|pid:none) Xenopus laevis proteasome 26S ATPa... 188 1e-75
BT075118_1(BT075118|pid:none) Osmerus mordax clone omor-rgc-504-... 188 1e-75
BC053187_1(BC053187|pid:none) Danio rerio proteasome (prosome, m... 188 1e-75
AJ719466_1(AJ719466|pid:none) Gallus gallus mRNA for hypothetica... 188 1e-75
(P35998) RecName: Full=26S protease regulatory subunit 7; AltNam... 188 1e-75
EU446703_1(EU446703|pid:none) Synthetic construct Homo sapiens c... 188 1e-75
AB075520_1(AB075520|pid:none) Homo sapiens neuroblastoma cDNA, c... 188 1e-75
AC093701_1(AC093701|pid:none) Homo sapiens BAC clone RP11-1252L1... 188 1e-75
AY892558_1(AY892558|pid:none) Synthetic construct Homo sapiens c... 169 1e-75
FB781850_1(FB781850|pid:none) Sequence 1123 from Patent WO200803... 190 2e-75
AF123391_1(AF123391|pid:none) Arabidopsis thaliana 26S proteasom... 190 2e-75
AB161192_1(AB161192|pid:none) Arabidopsis thaliana HLR mRNA for ... 190 2e-75
BC061542_1(BC061542|pid:none) Rattus norvegicus proteasome (pros... 188 2e-75
AE013599_464(AE013599|pid:none) Drosophila melanogaster chromoso... 187 2e-75
BT080753_1(BT080753|pid:none) Caligus clemensi clone ccle-evs-52... 171 2e-75
BT062241_1(BT062241|pid:none) Zea mays full-length cDNA clone ZM... 190 2e-75
BT081387_1(BT081387|pid:none) Drosophila melanogaster LP16188 fu... 172 2e-75
AE014298_899(AE014298|pid:none) Drosophila melanogaster chromoso... 172 2e-75
BC057997_1(BC057997|pid:none) Mus musculus proteasome (prosome, ... 169 2e-75
BC107950_1(BC107950|pid:none) Rattus norvegicus proteasome (pros... 169 2e-75
AC006081_7(AC006081|pid:none) Arabidopsis thaliana chromosome 2 ... 189 3e-75
CR380955_202(CR380955|pid:none) Candida glabrata strain CBS138 c... 192 3e-75
AM910996_49(AM910996|pid:none) Plasmodium knowlesi strain H chro... 178 3e-75
CQ840920_1(CQ840920|pid:none) Sequence 15 from Patent EP1439230.... 168 3e-75
BT043940_1(BT043940|pid:none) Salmo salar clone HM4_1948 proteas... 173 3e-75
D17789_1(D17789|pid:none) Oryza sativa Japonica Group mRNA for h... 190 4e-75
(P46466) RecName: Full=26S protease regulatory subunit 4 homolog... 190 4e-75
(O17071) RecName: Full=Probable 26S protease regulatory subunit ... 177 4e-75
(A6UQT3) RecName: Full=Proteasome-activating nucleotidase; AltNa... 176 4e-75
AF024493_9(AF024493|pid:none) Caenorhabditis elegans cosmid F23F... 177 4e-75
BT054998_1(BT054998|pid:none) Zea mays full-length cDNA clone ZM... 189 5e-75
AL590447_19(AL590447|pid:none) chromosome VII of strain GB-M1 of... 179 5e-75
CU928171_706(CU928171|pid:none) Kluyveromyces thermotolerans str... 190 7e-75
CU928173_172(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 194 7e-75
L17040_1(L17040|pid:none) Saccharomyces cerevisiae ATPase gene, ... 192 7e-75
AL844509_63(AL844509|pid:none) Plasmodium falciparum 3D7 chromos... 177 7e-75
AB037154_1(AB037154|pid:none) Oryza sativa Japonica Group OsRPT2... 189 9e-75
AC150776_3(AC150776|pid:none) Medicago truncatula chromosome 7 c... 187 9e-75
(Q63347) RecName: Full=26S protease regulatory subunit 7; AltNam... 186 9e-75
CR382135_216(CR382135|pid:none) Debaryomyces hansenii strain CBS... 187 1e-74
BC080137_1(BC080137|pid:none) Xenopus tropicalis 26S protease re... 185 1e-74
AY750867_1(AY750867|pid:none) Toxoptera citricida 26S protease r... 186 1e-74
BT077925_1(BT077925|pid:none) Lepeophtheirus salmonis Pacific fo... 167 1e-74
BC097594_1(BC097594|pid:none) Xenopus laevis hypothetical protei... 169 1e-74
AM270384_3(AM270384|pid:none) Aspergillus niger contig An17c0020... 186 2e-74
AY087584_1(AY087584|pid:none) Arabidopsis thaliana clone 36815 m... 186 2e-74
CR382130_469(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 187 2e-74
AY071182_1(AY071182|pid:none) Drosophila melanogaster RE23388 fu... 169 2e-74
AP007155_52(AP007155|pid:none) Aspergillus oryzae RIB40 genomic ... 167 2e-74
EU959285_1(EU959285|pid:none) Zea mays clone 214269 26S protease... 187 3e-74
DQ440423_1(DQ440423|pid:none) Aedes aegypti clone AET-5666 26S p... 170 3e-74
BT079180_1(BT079180|pid:none) Esox lucius clone eluc-evq-511-062... 171 3e-74
BT079937_1(BT079937|pid:none) Esox lucius clone eluc-evq-527-020... 170 3e-74
CP001325_99(CP001325|pid:none) Micromonas sp. RCC299 chromosome ... 184 4e-74
AK014354_1(AK014354|pid:none) Mus musculus 17 days embryo head c... 166 4e-74
BT073386_1(BT073386|pid:none) Oncorhynchus mykiss clone omyk-evn... 182 6e-74
AE017347_370(AE017347|pid:none) Cryptococcus neoformans var. neo... 193 7e-74
CP000816_585(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 186 7e-74
(P36612) RecName: Full=26S protease regulatory subunit 4 homolog... 190 1e-73
CR382126_636(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 189 1e-73
CP001140_1265(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 175 1e-73
T48743(T48743)probable 26S ATP/ubiquitin-dependent proteinase ch... 182 2e-73
AM114193_1720(AM114193|pid:none) Uncultured methanogenic archaeo... 196 2e-73
CR382137_302(CR382137|pid:none) Debaryomyces hansenii strain CBS... 184 2e-73
T49507(T49507)probable 26S proteasome regulatory particle chain ... 190 2e-73
BT058391_1(BT058391|pid:none) Salmo salar clone Contig273 26S pr... 183 2e-73
AM920437_1474(AM920437|pid:none) Penicillium chrysogenum Wiscons... 186 3e-73
AF432345_1(AF432345|pid:none) Tortula ruralis 26S proteasome reg... 188 3e-73
AC159413_35(AC159413|pid:none) Trypanosoma brucei chromosome 7 c... 182 4e-73
(Q9YAC7) RecName: Full=Proteasome-activating nucleotidase; AltNa... 171 5e-73
DQ202365_1(DQ202365|pid:none) Schistosoma mansoni 26S proteasome... 188 6e-73
AX497296_1(AX497296|pid:none) Sequence 63 from Patent WO0229058. 180 8e-73
AC007915_8(AC007915|pid:none) Genomic sequence for Arabidopsis t... 169 8e-73
FM992688_493(FM992688|pid:none) Candida dubliniensis CD36 chromo... 187 1e-72
CR940353_23(CR940353|pid:none) Theileria annulata strain Ankara ... 181 1e-72
AP007167_353(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 186 1e-72
AM494959_52(AM494959|pid:none) Leishmania braziliensis chromosom... 181 1e-72
AM270035_12(AM270035|pid:none) Aspergillus niger contig An02c041... 186 2e-72
AM494950_89(AM494950|pid:none) Leishmania braziliensis chromosom... 187 2e-72
AM502240_55(AM502240|pid:none) Leishmania infantum chromosome 22. 181 2e-72
CT005261_55(CT005261|pid:none) Leishmania major strain Friedlin,... 181 2e-72
CP000583_331(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 172 2e-72
DQ443392_1(DQ443392|pid:none) Bombyx mori 26S proteasome regulat... 166 2e-72
AJ223384_1(AJ223384|pid:none) Manduca sexta mRNA for 26S proteas... 166 2e-72
BT077020_1(BT077020|pid:none) Caligus rogercresseyi clone crog-e... 176 3e-72
FB781856_1(FB781856|pid:none) Sequence 1129 from Patent WO200803... 168 4e-72
FB781812_1(FB781812|pid:none) Sequence 1085 from Patent WO200803... 166 4e-72
AK298821_1(AK298821|pid:none) Homo sapiens cDNA FLJ52353 complet... 188 5e-72
FN314955_1(FN314955|pid:none) Schistosoma japonicum isolate Anhu... 188 5e-72
CR380951_271(CR380951|pid:none) Candida glabrata strain CBS138 c... 186 7e-72
BX538352_118(BX538352|pid:none) Cryptosporidium parvum chromosom... 182 7e-72
AE014298_1620(AE014298|pid:none) Drosophila melanogaster chromos... 186 9e-72
CR954203_337(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 171 1e-71
(Q86JA1) RecName: Full=26S protease regulatory subunit 7; AltNam... 185 1e-71
FB781814_1(FB781814|pid:none) Sequence 1087 from Patent WO200803... 165 1e-71
CU633899_420(CU633899|pid:none) Podospora anserina genomic DNA c... 161 1e-71
AM424422_1(AM424422|pid:none) Vitis vinifera contig VV78X256011.... 166 1e-71
AY814317_1(AY814317|pid:none) Schistosoma japonicum SJCHGC06030 ... 169 1e-71
DQ443126_1(DQ443126|pid:none) Bombyx mori 26S protease regulator... 182 3e-71
AL844509_114(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 177 7e-71
EF146866_1(EF146866|pid:none) Populus trichocarpa clone WS0121_F... 167 7e-71
CR940353_129(CR940353|pid:none) Theileria annulata strain Ankara... 165 1e-70
CP000300_1963(CP000300|pid:none) Methanococcoides burtonii DSM 6... 167 1e-70
CP001399_1810(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 161 1e-70
(P46507) RecName: Full=26S protease regulatory subunit 6B; AltNa... 182 1e-70
T39558(T39558)26S proteinase regulatory subunit 7 - fission yeas... 178 2e-70
BT040547_1(BT040547|pid:none) Zea mays full-length cDNA clone ZM... 166 2e-70
AC125735_52(AC125735|pid:none) Leishmania major strain Friedlin ... 175 2e-70
AY229998_1(AY229998|pid:none) Sulfolobus acidocaldarius strain D... 164 2e-70
(Q975U2) RecName: Full=Proteasome-activating nucleotidase; AltNa... 161 2e-70
AB033536_1(AB033536|pid:none) Oryza sativa Japonica Group OsRPT4... 166 3e-70
BT067445_1(BT067445|pid:none) Zea mays full-length cDNA clone ZM... 166 4e-70
EF676776_1(EF676776|pid:none) Picea sitchensis clone WS02751_M22... 165 5e-70
(P53549) RecName: Full=26S protease subunit RPT4; AltName: Full=... 157 6e-70
BC060362_1(BC060362|pid:none) Xenopus laevis proteasome 26S ATPa... 181 6e-70
AJ010592_143(AJ010592|pid:none) Guillardia theta DNA for complet... 174 6e-70
(O74445) RecName: Full=Probable 26S protease subunit rpt4; &CU3... 157 6e-70
AL691439_3(AL691439|pid:none) Mouse DNA sequence from clone RP23... 174 8e-70
AK063158_1(AK063158|pid:none) Oryza sativa Japonica Group cDNA c... 167 8e-70
CP001365_184(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 181 1e-69
AB070254_1(AB070254|pid:none) Oryza sativa Japonica Group OsRPT4... 167 1e-69
AF227500_1(AF227500|pid:none) Trypanosoma brucei proteasome regu... 182 1e-69
BC080888_1(BC080888|pid:none) Xenopus tropicalis proteasome (pro... 182 1e-69
FN357538_19(FN357538|pid:none) Schistosoma mansoni genome sequen... 181 1e-69
AF517885_1(AF517885|pid:none) Griffithsia japonica isolate Gj112... 183 1e-69
AY891401_1(AY891401|pid:none) Synthetic construct Homo sapiens c... 182 2e-69
(P43686) RecName: Full=26S protease regulatory subunit 6B; AltNa... 182 2e-69
(Q63570) RecName: Full=26S protease regulatory subunit 6B; AltNa... 182 2e-69
AK050677_1(AK050677|pid:none) Mus musculus 9 days embryo whole b... 182 2e-69
BT016035_1(BT016035|pid:none) Drosophila melanogaster RE01104 fu... 179 2e-69
AK222485_1(AK222485|pid:none) Homo sapiens mRNA for proteasome 2... 175 2e-69
AL954724_8(AL954724|pid:none) Zebrafish DNA sequence from clone ... 183 2e-69
AF227502_1(AF227502|pid:none) Trypanosoma brucei proteasome regu... 173 2e-69
AK167002_1(AK167002|pid:none) Mus musculus blastocyst blastocyst... 174 3e-69
AL691439_2(AL691439|pid:none) Mouse DNA sequence from clone RP23... 174 3e-69
(Q63569) RecName: Full=26S protease regulatory subunit 6A; AltNa... 174 3e-69
AK151370_1(AK151370|pid:none) Mus musculus bone marrow macrophag... 174 3e-69
AJ720697_1(AJ720697|pid:none) Gallus gallus mRNA for hypothetica... 174 3e-69
AB171711_1(AB171711|pid:none) Macaca fascicularis brain cDNA clo... 174 3e-69
AK168263_1(AK168263|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 174 3e-69
BC107804_1(BC107804|pid:none) Homo sapiens proteasome (prosome, ... 174 4e-69
(P17980) RecName: Full=26S protease regulatory subunit 6A; AltNa... 174 4e-69
BT046299_1(BT046299|pid:none) Salmo salar clone ssal-eve-543-152... 174 4e-69
BC103063_1(BC103063|pid:none) Bos taurus proteasome (prosome, ma... 174 4e-69
BT025458_1(BT025458|pid:none) Bos taurus proteasome (prosome, ma... 174 4e-69
BC054164_1(BC054164|pid:none) Xenopus laevis proteasome (prosome... 174 4e-69
BC075596_1(BC075596|pid:none) Xenopus tropicalis proteasome (pro... 174 4e-69
AF020736_1(AF020736|pid:none) Homo sapiens ATPase homolog mRNA, ... 182 4e-69
BT075424_1(BT075424|pid:none) Osmerus mordax clone omor-eva-511-... 181 4e-69
(O42586) RecName: Full=26S protease regulatory subunit 6A-B; Alt... 174 4e-69
AK167061_1(AK167061|pid:none) Mus musculus blastocyst blastocyst... 173 5e-69
A99111(A99111) 26S proteasome AAA-ATPase subunit [imported] - Gu... 190 5e-69
U77918_1(U77918|pid:none) Rattus norvegicus spermatogenic cell/s... 173 7e-69
CP000682_2236(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 157 7e-69
(P33297) RecName: Full=26S protease regulatory subunit 6A; AltNa... 175 9e-69
AL590449_141(AL590449|pid:none) chromosome X of strain GB-M1 of ... 182 1e-68
(Q8SQI9) RecName: Full=26S protease regulatory subunit 6B homolo... 176 1e-68
DQ206974_1(DQ206974|pid:none) Schistosoma mansoni 26S proteasome... 157 1e-68
CU928168_500(CU928168|pid:none) Kluyveromyces thermotolerans str... 151 1e-68
BT040193_1(BT040193|pid:none) Zea mays full-length cDNA clone ZM... 180 1e-68
AK160644_1(AK160644|pid:none) Mus musculus 10, 11 days embryo wh... 182 1e-68
BT034485_1(BT034485|pid:none) Zea mays full-length cDNA clone ZM... 180 2e-68
AP002854_15(AP002854|pid:none) Oryza sativa Japonica Group genom... 180 2e-68
BT043367_1(BT043367|pid:none) Zea mays full-length cDNA clone ZM... 180 2e-68
BC055215_1(BC055215|pid:none) Danio rerio proteasome (prosome, m... 180 2e-68
(P54778) RecName: Full=26S protease regulatory subunit 6B homolo... 175 2e-68
EZ000460_1(EZ000460|pid:none) TSA: Culex tarsalis Ctar-313 26S p... 168 2e-68
AY540192_1(AY540192|pid:none) Oreochromis mossambicus proteasome... 175 2e-68
AE016814_74(AE016814|pid:none) Ashbya gossypii (= Eremothecium g... 150 3e-68
AY627303_1(AY627303|pid:none) Haloferax volcanii DS2 proteasome-... 180 3e-68
CR936257_759(CR936257|pid:none) Natronomonas pharaonis DSM 2160 ... 179 3e-68
EF147477_1(EF147477|pid:none) Populus trichocarpa clone WS01231_... 174 3e-68
EF148658_1(EF148658|pid:none) Populus trichocarpa x Populus delt... 174 3e-68
AE008384_798(AE008384|pid:none) Methanosarcina mazei strain Goe1... 180 4e-68
FB781798_1(FB781798|pid:none) Sequence 1071 from Patent WO200803... 174 4e-68
CR380957_379(CR380957|pid:none) Candida glabrata strain CBS138 c... 155 6e-68
D17788_1(D17788|pid:none) Oryza sativa Japonica Group mRNA for h... 179 6e-68
CR380947_109(CR380947|pid:none) Candida glabrata strain CBS138 c... 173 6e-68
BT080690_1(BT080690|pid:none) Caligus clemensi clone ccle-evs-50... 179 9e-68
FB781802_1(FB781802|pid:none) Sequence 1075 from Patent WO200803... 177 9e-68
CP000099_389(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 181 9e-68
AC009606_1(AC009606|pid:none) Arabidopsis thaliana chromosome II... 178 2e-67
AF412095_1(AF412095|pid:none) Arabidopsis thaliana At1g09100/F7G... 178 2e-67
(O04019) RecName: Full=26S protease regulatory subunit 6A homolo... 178 2e-67
CP001326_453(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 173 2e-67
AM180088_563(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 ... 176 2e-67
CU928178_509(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 154 2e-67
(P54775) RecName: Full=26S protease regulatory subunit 6B; AltNa... 176 2e-67
AE014297_1050(AE014297|pid:none) Drosophila melanogaster chromos... 179 2e-67
CP000254_1009(CP000254|pid:none) Methanospirillum hungatei JF-1,... 184 2e-67
CR382125_922(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 174 3e-67
AC136288_5(AC136288|pid:none) Medicago truncatula clone mth2-13o... 176 3e-67
FN392322_403(FN392322|pid:none) Pichia pastoris GS115 chromosome... 154 3e-67
BT078140_1(BT078140|pid:none) Lepeophtheirus salmonis Pacific fo... 172 3e-67
CR936257_2506(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 180 3e-67
AP007154_387(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 181 4e-67
AF134402_1(AF134402|pid:none) Drosophila melanogaster Tat-bindin... 175 5e-67
(P54776) RecName: Full=26S protease regulatory subunit 6A homolo... 177 5e-67
AY596297_3126(AY596297|pid:none) Haloarcula marismortui ATCC 430... 178 5e-67
BT052739_1(BT052739|pid:none) Medicago truncatula clone MTYFH_FI... 175 6e-67
AK071476_1(AK071476|pid:none) Oryza sativa Japonica Group cDNA c... 175 6e-67
AC104496_3(AC104496|pid:none) Trypanosoma cruzi strain CL Brener... 176 6e-67
AB070253_1(AB070253|pid:none) Oryza sativa Japonica Group OsRPT3... 175 6e-67
AM502240_60(AM502240|pid:none) Leishmania infantum chromosome 22. 182 1e-66
CP001575_145(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 172 1e-66
EU016618_25(EU016618|pid:none) Uncultured marine microorganism H... 154 1e-66
CT005261_60(CT005261|pid:none) Leishmania major strain Friedlin,... 182 1e-66
AY750868_1(AY750868|pid:none) Toxoptera citricida putative 26S p... 175 1e-66
AM494959_57(AM494959|pid:none) Leishmania braziliensis chromosom... 182 2e-66
BT077485_1(BT077485|pid:none) Lepeophtheirus salmonis Pacific fo... 178 2e-66
(Q9HRW6) RecName: Full=Proteasome-activating nucleotidase 2; Alt... 172 2e-66
AE014186_295(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 177 2e-66
AE014297_1051(AE014297|pid:none) Drosophila melanogaster chromos... 179 2e-66
BX908789_22(BX908789|pid:none) Neurospora crassa DNA linkage gro... 167 2e-66
CR382138_643(CR382138|pid:none) Debaryomyces hansenii strain CBS... 153 2e-66
CR382130_373(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 174 2e-66
BX908808_47(BX908808|pid:none) Neurospora crassa DNA linkage gro... 182 3e-66
FN357393_54(FN357393|pid:none) Schistosoma mansoni genome sequen... 176 4e-66
CU638744_559(CU638744|pid:none) Podospora anserina genomic DNA c... 176 5e-66
EF085905_1(EF085905|pid:none) Picea sitchensis clone WS0295_I06 ... 173 5e-66
AY627304_1(AY627304|pid:none) Haloferax volcanii DS2 proteasome-... 164 5e-66
CU928178_417(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 171 1e-65
AM910991_280(AM910991|pid:none) Plasmodium knowlesi strain H chr... 177 1e-65
AF067618_3(AF067618|pid:none) Caenorhabditis elegans cosmid F56H... 177 1e-65
FN314258_1(FN314258|pid:none) Schistosoma japonicum isolate Anhu... 174 1e-65
FM992695_364(FM992695|pid:none) Candida dubliniensis CD36 chromo... 150 2e-65
AF227503_1(AF227503|pid:none) Trypanosoma brucei proteasome regu... 181 3e-65
CP000586_397(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 172 3e-65
FB781816_1(FB781816|pid:none) Sequence 1089 from Patent WO200803... 171 3e-65
CP000589_215(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 171 3e-65
AP007155_599(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 162 3e-65
BC025134_1(BC025134|pid:none) Mus musculus proteasome (prosome, ... 169 3e-65
AM910987_174(AM910987|pid:none) Plasmodium knowlesi strain H chr... 164 4e-65
AE010299_4017(AE010299|pid:none) Methanosarcina acetivorans str.... 176 7e-65
AL691439_1(AL691439|pid:none) Mouse DNA sequence from clone RP23... 159 1e-64
CP001338_484(CP001338|pid:none) Candidatus Methanosphaerula palu... 171 2e-64
(P46502) RecName: Full=Probable 26S protease regulatory subunit ... 170 3e-64
AM494949_23(AM494949|pid:none) Leishmania braziliensis chromosom... 172 3e-64
CT005251_22(CT005251|pid:none) Leishmania major strain Friedlin,... 171 4e-64
AM502230_19(AM502230|pid:none) Leishmania infantum chromosome 12. 171 4e-64
AE017353_152(AE017353|pid:none) Cryptococcus neoformans var. neo... 171 8e-64
AF051251_1(AF051251|pid:none) Picea mariana TAT-binding protein ... 246 1e-63
AM118080_27(AM118080|pid:none) Ustilago hordei mating type regio... 171 3e-63
AJ010592_72(AJ010592|pid:none) Guillardia theta DNA for complete... 150 4e-63
CR380957_405(CR380957|pid:none) Candida glabrata strain CBS138 c... 157 5e-63
CU928171_100(CU928171|pid:none) Kluyveromyces thermotolerans str... 154 5e-63
AE017342_397(AE017342|pid:none) Cryptococcus neoformans var. neo... 161 9e-63
(Q9HNP9) RecName: Full=Proteasome-activating nucleotidase 1; Alt... 160 9e-63
CR382130_485(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 162 9e-63
FM992689_281(FM992689|pid:none) Candida dubliniensis CD36 chromo... 157 1e-62
CR382123_278(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 153 2e-62
AP005056_24(AP005056|pid:none) Oryza sativa Japonica Group genom... 179 2e-62
AE016819_627(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 151 8e-61
FN357393_55(FN357393|pid:none) Schistosoma mansoni genome sequen... 158 1e-60
AJ010592_133(AJ010592|pid:none) Guillardia theta DNA for complet... 166 1e-60
CP000882_30(CP000882|pid:none) Hemiselmis andersenii chromosome ... 151 3e-58
CP000881_144(CP000881|pid:none) Hemiselmis andersenii chromosome... 162 2e-57
AC147002_2(AC147002|pid:none) Medicago truncatula clone mth2-151... 135 3e-56
AB070252_1(AB070252|pid:none) Oryza sativa Japonica Group OsRPT1... 192 1e-55
FN357393_56(FN357393|pid:none) Schistosoma mansoni genome sequen... 139 5e-55
AB170960_1(AB170960|pid:none) Macaca fascicularis brain cDNA clo... 193 5e-55
AB429248_1(AB429248|pid:none) Dicyema japonicum psmc3 gene for 2... 160 3e-54
AB170497_1(AB170497|pid:none) Macaca fascicularis brain cDNA clo... 148 3e-54
AK071386_1(AK071386|pid:none) Oryza sativa Japonica Group cDNA c... 156 6e-54
CR855073_5(CR855073|pid:none) Oryza sativa (indica cultivar-grou... 156 6e-54
(O28972) RecName: Full=Cell division cycle protein 48 homolog AF... 140 8e-52
AE009439_486(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 120 2e-50
CP000505_671(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 140 2e-49
CP000493_291(CP000493|pid:none) Hyperthermus butylicus DSM 5456,... 138 3e-49
CP001398_1690(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 137 1e-48
CP000866_101(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 124 1e-48
AK150189_1(AK150189|pid:none) Mus musculus bone marrow macrophag... 113 1e-48
(Q58556) RecName: Full=Cell division cycle protein 48 homolog MJ... 142 2e-48
BX950229_176(BX950229|pid:none) Methanococcus maripaludis strain... 140 2e-48
CP000682_210(CP000682|pid:none) Metallosphaera sedula DSM 5348, ... 134 2e-48
CP000493_1304(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 132 2e-48
AY255679_4(AY255679|pid:none) Sulfolobus acidocaldarius DSM 639 ... 132 3e-48
CP001399_1960(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 132 5e-48
CP000866_11(CP000866|pid:none) Nitrosopumilus maritimus SCM1, co... 128 1e-47
CP000609_1479(CP000609|pid:none) Methanococcus maripaludis C5, c... 137 3e-47
(Q9HPF0) RecName: Full=Protein cdcH; &AE004437_1275(AE004437|pi... 129 5e-47
CP000477_519(CP000477|pid:none) Methanosaeta thermophila PT, com... 132 5e-47
B71196(B71196) probable transitional endoplasmic reticulum ATPas... 133 7e-47
BC094063_1(BC094063|pid:none) Mus musculus proteasome (prosome, ... 182 9e-47
A69086(A69086) cell division control protein Cdc48 - Methanobact... 135 1e-46
GM015171_186(GM015171|pid:none) Sequence 1 from Patent EP1923464. 132 1e-46
AP006878_1158(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 132 1e-46
AJ248284_97(AJ248284|pid:none) Pyrococcus abyssi complete genome... 132 2e-46
BA000001_713(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c... 130 3e-46
CR936257_1989(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 126 3e-46
CP000102_1047(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 132 3e-46
AY596297_693(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 130 6e-46
AY596297_1361(AY596297|pid:none) Haloarcula marismortui ATCC 430... 126 6e-46
EF103411_1(EF103411|pid:none) Haliotis discus discus psmc6 prote... 138 6e-46
AE009950_963(AE009950|pid:none) Pyrococcus furiosus DSM 3638, co... 130 7e-46
CP000855_1119(CP000855|pid:none) Thermococcus onnurineus NA1, co... 129 7e-46
CP001398_1723(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 128 9e-46
AB018433_1(AB018433|pid:none) Pyrococcus kodakaraensis Pk-cdcA g... 130 9e-46
CP000742_1163(CP000742|pid:none) Methanococcus vannielii SB, com... 130 9e-46
CP000477_76(CP000477|pid:none) Methanosaeta thermophila PT, comp... 124 9e-46
AM114193_1763(AM114193|pid:none) Uncultured methanogenic archaeo... 125 1e-45
AM180088_1817(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 128 2e-45
AE010299_1765(AE010299|pid:none) Methanosarcina acetivorans str.... 126 2e-45
CP000968_194(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 117 2e-45
CP000816_691(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 130 2e-45
CP000780_2417(CP000780|pid:none) Candidatus Methanoregula boonei... 121 3e-45
AE008384_1256(AE008384|pid:none) Methanosarcina mazei strain Goe... 132 3e-45
CP000575_1105(CP000575|pid:none) Staphylothermus marinus F1, com... 128 3e-45
AE000782_2073(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 128 4e-45
AM180088_2248(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 123 5e-45
CP001338_250(CP001338|pid:none) Candidatus Methanosphaerula palu... 121 6e-45
AM114193_2109(AM114193|pid:none) Uncultured methanogenic archaeo... 131 8e-45
AE010299_4460(AE010299|pid:none) Methanosarcina acetivorans str.... 128 8e-45
AE004438_162(AE004438|pid:none) Halobacterium sp. NRC-1 plasmid ... 126 8e-45
CP001365_2346(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 129 1e-44
FB781858_1(FB781858|pid:none) Sequence 1131 from Patent WO200803... 117 1e-44
FB906005_1(FB906005|pid:none) Sequence 125278 from Patent WO2008... 117 1e-44
FB781494_1(FB781494|pid:none) Sequence 767 from Patent WO2008034... 117 1e-44
EU961444_1(EU961444|pid:none) Zea mays clone 235510 unknown mRNA. 117 1e-44
AE017261_456(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 127 2e-44
CP000660_1594(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 131 2e-44
AE008691_1853(AE008691|pid:none) Thermoanaerobacter tengcongensi... 143 2e-44
AK150989_1(AK150989|pid:none) Mus musculus bone marrow macrophag... 105 2e-44
CP001338_767(CP001338|pid:none) Candidatus Methanosphaerula palu... 110 3e-44
CP001365_2041(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 125 3e-44
AL162751_7(AL162751|pid:none) Arabidopsis thaliana DNA chromosom... 115 4e-44
FB781796_1(FB781796|pid:none) Sequence 1069 from Patent WO200803... 115 4e-44
GM966461_1(GM966461|pid:none) Sequence 1793 from Patent WO200814... 115 4e-44
GQ131539_1(GQ131539|pid:none) Nicotiana glutinosa cell division ... 115 4e-44
L17042_1(L17042|pid:none) Sulfolobus acidocaldarius ATPase gene,... 124 4e-44
CP000099_2251(CP000099|pid:none) Methanosarcina barkeri str. Fus... 128 4e-44
GM966463_1(GM966463|pid:none) Sequence 1795 from Patent WO200814... 114 7e-44
CP001399_1656(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 125 7e-44
CP001404_1031(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 125 7e-44
CP000099_888(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 127 7e-44
AM180088_1780(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 131 7e-44
AE009441_467(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,... 129 7e-44
CR954201_368(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 115 8e-44
GM965351_1(GM965351|pid:none) Sequence 683 from Patent WO2008142... 114 9e-44
CP000561_2090(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 128 9e-44
CP001140_1067(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 126 1e-43
CP001279_131(CP001279|pid:none) Nautilia profundicola AmH, compl... 132 1e-43
CP000702_338(CP000702|pid:none) Thermotoga petrophila RKU-1, com... 135 1e-43
CP001574_308(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 115 1e-43
EU606206_1(EU606206|pid:none) Dimocarpus longan cell division cy... 114 1e-43
CP000300_1547(CP000300|pid:none) Methanococcoides burtonii DSM 6... 119 1e-43
CP000510_1206(CP000510|pid:none) Psychromonas ingrahamii 37, com... 123 1e-43
AE000512_571(AE000512|pid:none) Thermotoga maritima MSB8, comple... 135 1e-43
CP000969_350(CP000969|pid:none) Thermotoga sp. RQ2, complete gen... 135 1e-43
AK098874_1(AK098874|pid:none) Oryza sativa Japonica Group cDNA c... 114 2e-43
(Q96372) RecName: Full=Cell division cycle protein 48 homolog; ... 113 2e-43
CP000581_397(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 114 2e-43
CT005272_140(CT005272|pid:none) Leishmania major strain Friedlin... 114 2e-43
CP000924_542(CP000924|pid:none) Thermoanaerobacter pseudethanoli... 144 2e-43
CP000923_1009(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 144 2e-43
FB905989_1(FB905989|pid:none) Sequence 125262 from Patent WO2008... 112 2e-43
FB781564_1(FB781564|pid:none) Sequence 837 from Patent WO2008034... 112 2e-43
CP000096_683(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 122 2e-43
DQ515925_1(DQ515925|pid:none) Nicotiana tabacum putative spindle... 114 3e-43
BA000011_975(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 124 3e-43
FB906007_1(FB906007|pid:none) Sequence 125280 from Patent WO2008... 113 4e-43
AF044488_1(AF044488|pid:none) Trypanosoma brucei valosin-contain... 112 4e-43
CP000562_1555(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 110 5e-43
(O05209) RecName: Full=VCP-like ATPase; &AL445065_184(AL445065|... 125 5e-43
CP001014_1584(CP001014|pid:none) Thermoproteus neutrophilus V24S... 129 5e-43
CP000561_1786(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 127 5e-43
CP000916_84(CP000916|pid:none) Thermotoga neapolitana DSM 4359, ... 131 5e-43
AY596297_707(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 128 7e-43
BT052420_1(BT052420|pid:none) Medicago truncatula clone MTYFD_FE... 177 7e-43
AE009441_2232(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 127 9e-43
AB071016_1(AB071016|pid:none) Oryza sativa Japonica Group OsRPT5... 177 1e-42
AE010299_3436(AE010299|pid:none) Methanosarcina acetivorans str.... 122 1e-42
BA000023_415(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 120 1e-42
CP000504_677(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 125 1e-42
CP000096_76(CP000096|pid:none) Pelodictyon luteolum DSM 273, com... 140 1e-42
CP001108_117(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 140 1e-42
CP000781_3054(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 139 1e-42
FN357325_50(FN357325|pid:none) Schistosoma mansoni genome sequen... 109 2e-42
FN357325_52(FN357325|pid:none) Schistosoma mansoni genome sequen... 109 2e-42
FN357325_51(FN357325|pid:none) Schistosoma mansoni genome sequen... 108 2e-42

>(P34124) RecName: Full=26S protease regulatory subunit 8; AltName:
Full=Proteasome 26S subunit ATPase 5; AltName:
Full=TAT-binding protein homolog 10;
Length = 403

Score = 390 bits (1001), Expect(2) = 0.0
Identities = 198/198 (100%), Positives = 198/198 (100%)
Frame = +2

Query: 167 MVAQNNQQNKDETKGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQ 346
MVAQNNQQNKDETKGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQ
Sbjct: 1 MVAQNNQQNKDETKGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQ 60

Query: 347 LLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLH 526
LLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLH
Sbjct: 61 LLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLH 120

Query: 527 RILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPK 706
RILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPK
Sbjct: 121 RILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPK 180

Query: 707 GVLLYGPPGTGKTLLARA 760
GVLLYGPPGTGKTLLARA
Sbjct: 181 GVLLYGPPGTGKTLLARA 198

Score = 350 bits (898), Expect(2) = 0.0
Identities = 181/201 (90%), Positives = 181/201 (90%)
Frame = +3

Query: 762 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDXXXXXXXXXXXXX 941
VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMD
Sbjct: 199 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESG 258

Query: 942 XXXXXXXVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPG 1121
VQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPG
Sbjct: 259 SGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPG 318

Query: 1122 DAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQE 1301
DAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQE
Sbjct: 319 DAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQE 378

Query: 1302 DFEMAVSKVMKKDSEQNMSIN 1364
DFEMAVSKVMKKDSEQNMSIN
Sbjct: 379 DFEMAVSKVMKKDSEQNMSIN 399

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,009,910,043
Number of extensions: 36876531
Number of successful extensions: 164584
Number of sequences better than 10.0: 2698
Number of HSP's gapped: 160876
Number of HSP's successfully gapped: 5606
Length of query: 528
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 395
Effective length of database: 620,718,517
Effective search space: 245183814215
Effective search space used: 245183814215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.61 gvh: 0.26 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.20 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U14923-1 is cyt

VS (DIR, S) 4
VH (FL, L) 0
VF (FL, S) 9
AH (FL, L) 0
AF (FL, S) 12
SL (DIR, L) 0
SS (DIR, S) 6
SH (FL, L) 0
SF (FL, S) 4
CH (FL, L) 1
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0