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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14906-1
Contig ID Contig-U14906-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Contig-U14906-1Q.Seq.d
AACAAATATAAATACAATGACAACACAAGTTCCAAAAATTAAATGGGCAG
AAAGACCAGACTTTGTTTATATTACAATTGAAGCAGATGTTGAATCTCCA
GTTGTTAAATTCGAATCAAACAAAATTTCATTCGAAGGTAAAGGTAAAGA
TGGTAAACAATACGCCTTTTCCTATGATTTATTCAAAGAAATCGATGCTG
ATAAATCATCAACTGATTTCAAAACAAGCAGATACCCAAGATTAAAATTA
GTTAAAAAAGATGCCGGTCCATATTGGAACTTTTTATTAAAAGATAAAAA
GAAAGACAAGTTTGTTGAAACCGATTGGACTCTTTGGAAGGATGAAGATG
AAGTAGAAGAAAATGAAGATGCTGGTAAATTCGGTAACTTTGATATGGGT
GGCATGGATATGCAACAAATGATGCAAGGCATGGGAGGTATGCCAGATGG
TATGAATTTCGATGATATGGATGATATGGAAGATTTAGAAGACAAAGAAG
AAGAAGGTGACAAAAAGAATACCGAAGAAACTGAAGAAACTAAATTAAAC
TCTGTTGATTAAATAAATAGTAATAACACATATTTATATTCCCACTTTAT
CCCCCAAAATTTAAAAAATAAAATAAAAATTAAA
Gap no gap
Contig length 634
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1340731
End point 1340097
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14906
List of clone(s) 

est1=VSI768E,1,635
Translated Amino Acid sequence 
TNINTMTTQVPKIKWAERPDFVYITIEADVESPVVKFESNKISFEGKGKDGKQYAFSYDL
FKEIDADKSSTDFKTSRYPRLKLVKKDAGPYWNFLLKDKKKDKFVETDWTLWKDEDEVEE
NEDAGKFGNFDMGGMDMQQMMQGMGGMPDGMNFDDMDDMEDLEDKEEEGDKKNTEETEET
KLNSVD*insnntylyshfipqnlknkikik
Translated Amino Acid sequence (All Frames) 
Frame A:
nkykyndntsskn*mgrktrlclyyn*src*issc*irikqnfirr*r*rw*tirlfl*f
iqrnrc**iin*fqnkqipkikis*krcrsilelfikr*kerqvc*nrldsleg*r*srr
k*rcw*ir*l*ygwhgyatndarhgryarwyefr*yg*ygrfrrqrrrr*qkeyrrn*rn
*iklc*lnk***hififplyppkfkk*nkn*


Frame B:
TNINTMTTQVPKIKWAERPDFVYITIEADVESPVVKFESNKISFEGKGKDGKQYAFSYDL
FKEIDADKSSTDFKTSRYPRLKLVKKDAGPYWNFLLKDKKKDKFVETDWTLWKDEDEVEE
NEDAGKFGNFDMGGMDMQQMMQGMGGMPDGMNFDDMDDMEDLEDKEEEGDKKNTEETEET
KLNSVD*insnntylyshfipqnlknkikik


Frame C:
qi*iq*qhkfqklngqkdqtlfilqlkqmlnlqllnsnqtkfhskvkvkmvnntpfpmiy
skksmlinhqliskqadtqd*n*lkkmpvhigtfy*kikrktsllkpiglfgrmkmk*kk
mkmlvnsvtliwvawicnk*ckawevcqmv*ismiwmiwki*ktkkkkvtkripkklkkl
n*tllik*ivithiyiptlspki*kik*kl
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14906-1 (Contig-U14906-1Q)
/CSM_Contig/Contig-U14906-1Q.Seq.d
         (634 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Conti...   963  0.0
Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U13607-1 (Contig-U13607-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U10519-1 (Contig-U10519-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U10062-1 (Contig-U10062-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U05031-1 (Contig-U05031-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13092-1 (Contig-U13092-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U05944-1 (Contig-U05944-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U04992-1 (Contig-U04992-1Q) /CSM_Contig/Conti...    36  0.044

>Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Contig-U14906-1Q.Seq.d
          Length = 634

 Score =  963 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaatataaatacaatgacaacacaagttccaaaaattaaatgggcagaaagaccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacaaatataaatacaatgacaacacaagttccaaaaattaaatgggcagaaagaccaga 60

                                                                       
Query: 61  ctttgtttatattacaattgaagcagatgttgaatctccagttgttaaattcgaatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttgtttatattacaattgaagcagatgttgaatctccagttgttaaattcgaatcaaa 120

                                                                       
Query: 121 caaaatttcattcgaaggtaaaggtaaagatggtaaacaatacgccttttcctatgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaatttcattcgaaggtaaaggtaaagatggtaaacaatacgccttttcctatgattt 180

                                                                       
Query: 181 attcaaagaaatcgatgctgataaatcatcaactgatttcaaaacaagcagatacccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcaaagaaatcgatgctgataaatcatcaactgatttcaaaacaagcagatacccaag 240

                                                                       
Query: 241 attaaaattagttaaaaaagatgccggtccatattggaactttttattaaaagataaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaaaattagttaaaaaagatgccggtccatattggaactttttattaaaagataaaaa 300

                                                                       
Query: 301 gaaagacaagtttgttgaaaccgattggactctttggaaggatgaagatgaagtagaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaagacaagtttgttgaaaccgattggactctttggaaggatgaagatgaagtagaaga 360

                                                                       
Query: 361 aaatgaagatgctggtaaattcggtaactttgatatgggtggcatggatatgcaacaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatgaagatgctggtaaattcggtaactttgatatgggtggcatggatatgcaacaaat 420

                                                                       
Query: 421 gatgcaaggcatgggaggtatgccagatggtatgaatttcgatgatatggatgatatgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgcaaggcatgggaggtatgccagatggtatgaatttcgatgatatggatgatatgga 480

                 
Query: 481 agattt 486
           ||||||
Sbjct: 481 agattt 486


 Score =  131 bits (66), Expect = 1e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                       
Query: 540 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 599

                 
Query: 600 tccccc 605
           ||||||
Sbjct: 600 tccccc 605


>Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Contig-U11510-1Q.Seq.d
          Length = 993

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 341 gatgaagatgaagtagaagaaaatgaagatg 371
           ||||||||||||||||||||| | |||||||
Sbjct: 622 gatgaagatgaagtagaagaagaagaagatg 652


>Contig-U13607-1 (Contig-U13607-1Q) /CSM_Contig/Contig-U13607-1Q.Seq.d
          Length = 630

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 76  aattgaagcagatgttgaatctccagttgtt 106
           ||||||| ||||||||||| |||||| ||||
Sbjct: 287 aattgaaccagatgttgaacctccagatgtt 257


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9936
Number of Sequences: 6905
Number of extensions: 9936
Number of successful extensions: 1038
Number of sequences better than 10.0: 147
length of query: 634
length of database: 5,674,871
effective HSP length: 16
effective length of query: 618
effective length of database: 5,564,391
effective search space: 3438793638
effective search space used: 3438793638
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1. 4
Homology vs DNA 
Query= Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Contig-U14906-1Q.Seq.d
         (634 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269204) Dictyostelium discoideum vegetative cDNA clone:VS...   948   0.0    2
(C24328) Dictyostelium discoideum gamete cDNA, clone FC-AR09.     856   0.0    2
(AU262450) Dictyostelium discoideum vegetative cDNA clone:VS...   850   0.0    2
(AU268994) Dictyostelium discoideum vegetative cDNA clone:VS...   781   0.0    3
(AU264745) Dictyostelium discoideum vegetative cDNA clone:VS...   811   0.0    2
(AU264757) Dictyostelium discoideum vegetative cDNA clone:VS...   702   0.0    3
(BJ357682) Dictyostelium discoideum cDNA clone:dda64j07, 3' ...   811   0.0    3
(AU268386) Dictyostelium discoideum vegetative cDNA clone:VS...   860   0.0    1
(AU268993) Dictyostelium discoideum vegetative cDNA clone:VS...   854   0.0    1
(BJ419547) Dictyostelium discoideum cDNA clone:ddv36n11, 5' ...   854   0.0    1
(AU269203) Dictyostelium discoideum vegetative cDNA clone:VS...   850   0.0    1
(AU264756) Dictyostelium discoideum vegetative cDNA clone:VS...   846   0.0    1
(BJ413129) Dictyostelium discoideum cDNA clone:ddv14d12, 5' ...   823   0.0    1
(AU264744) Dictyostelium discoideum vegetative cDNA clone:VS...   811   0.0    1
(BJ438124) Dictyostelium discoideum cDNA clone:ddv36n11, 3' ...   807   0.0    1
(BJ431471) Dictyostelium discoideum cDNA clone:ddv14d12, 3' ...   726   0.0    1
(C92075) Dictyostelium discoideum slug cDNA, clone SSD360.        611   0.0    2
(AU261409) Dictyostelium discoideum vegetative cDNA clone:VS...   541   0.0    3
(AU262081) Dictyostelium discoideum vegetative cDNA clone:VS...   577   0.0    2
(AU036915) Dictyostelium discoideum slug cDNA, clone SSB806.      549   e-157  2
(BJ409769) Dictyostelium discoideum cDNA clone:dds42o02, 3' ...   414   e-135  3
(AU072075) Dictyostelium discoideum slug cDNA, clone SSD360.      476   e-130  1
(AU268387) Dictyostelium discoideum vegetative cDNA clone:VS...   371   e-130  2
(BJ396513) Dictyostelium discoideum cDNA clone:dds42o02, 5' ...   414   e-111  1
(AU265765) Dictyostelium discoideum vegetative cDNA clone:VS...   131   4e-50  2
(AU265764) Dictyostelium discoideum vegetative cDNA clone:VS...   131   4e-50  2
(AU071564) Dictyostelium discoideum slug cDNA, clone SSB806.      131   7e-39  2
(FL623208) CAIO1070.rev CAIO Postia placenta in rich medium ...    38   0.005  2
(FL623209) CAIO1070.fwd CAIO Postia placenta in rich medium ...    38   0.005  2
(FL628151) CATS2818.fwd CATS Postia placenta in Avicel mediu...    38   0.005  2
(FL614837) CAIG9099.rev CAIG Postia placenta in rich medium ...    38   0.005  2
(FL614838) CAIG9099.fwd CAIG Postia placenta in rich medium ...    38   0.005  2
(FL599732) CAIG12043.fwd CAIG Postia placenta in rich medium...    38   0.005  2
(AC116919) Dictyostelium discoideum chromosome 2 map complem...    46   0.036  3
(EY139893) CBTH6984.b1_O17.ab1:P Triphysaria pusilla root ti...    32   0.058  3
(AC159124) Medicago truncatula clone mth2-172h20, complete s...    50   0.097  1
(AC149207) Medicago truncatula chromosome 2 clone mte1-60l24...    50   0.097  1
(CR342394) mte1-75I13RM1 BAC end, cultivar Jemalong A17 of M...    50   0.097  1
(BE574874) A03 Triphysaria versicolor root-tip, early DMBQ-i...    32   0.10   3
(AC175141) Bos taurus clone CH240-525D13, WORKING DRAFT SEQU...    44   0.14   4
(EY019098) CBAB2488.g1:P T. versicolor self root extracts re...    32   0.16   3
(EY007038) CBAI2088.g1:P T. versicolor root tip enriched SSH...    32   0.21   3
(AC195790) Zea mays chromosome 5 clone CH201-203I9; ZMMBBc02...    46   0.24   4
(BH133298) ENTNY78TF Entamoeba histolytica Sheared DNA Entam...    46   0.26   2
(ES497262) BIG_AF_5078 Brine Shrimp Adult (20 days after hat...    34   0.29   2
(DR026717) Osmo01361 F. cylindrus osmotic stress library Fra...    38   0.32   3
(AC193209) Pan troglodytes BAC clone CH251-562J12 from chrom...    48   0.39   1
(AM432820) Vitis vinifera contig VV78X073406.3, whole genome...    48   0.39   1
(AL031746) Plasmodium falciparum DNA from MAL1P3.                  48   0.39   1
(AF251290) Plasmodium falciparum glutamic acid-rich protein ...    48   0.39   1
(AC157966) Strongylocentrotus purpuratus clone R3-4002M14, W...    48   0.39   1
(AC097137) Rattus norvegicus clone CH230-82G23, *** SEQUENCI...    48   0.39   1
(AC193211) Pan troglodytes chromosome 1 clone CH251-646O21, ...    48   0.39   1
(AC180833) Strongylocentrotus purpuratus clone R3-3069H16, W...    48   0.39   1
(AC168396) Strongylocentrotus purpuratus clone R3-4002M14, W...    48   0.39   1
(EL505452) G06_340_302.AB1 Blood stage Plasmodium falciparum...    48   0.39   1
(EL505427) G05_340_1.AB1 Blood stage Plasmodium falciparum c...    48   0.39   1
(EL504076) B06_2679_1.AB1 Blood stage Plasmodium falciparum ...    48   0.39   1
(EL503421) G11_PFLAB1-M-PLATE1B.AB1 Blood stage Plasmodium f...    48   0.39   1
(AC218152) Zea mays chromosome 10 clone ZMMBBb-377K16; ZMMBB...    46   0.52   2
(ER587195) 1093015883800 Global-Ocean-Sampling_GS-36-01-01-2...    30   0.56   4
(AC226511) Solanum lycopersicum chromosome 2 clone C02HBa017...    36   0.89   5
(AL434676) T3 end of clone BB0AA025C05 of library BB0AA from...    42   0.89   2
(AM438236) Vitis vinifera contig VV78X141747.12, whole genom...    36   0.98   2
(BC059806) Danio rerio G protein-coupled receptor 143, mRNA ...    32   1.0    2
(CD754949) AGENCOURT_14627365 NCI_CGAP_ZEmb2 Danio rerio cDN...    32   1.1    2
(CA495916) AGENCOURT_10810844 NCI_CGAP_ZEmb2 Danio rerio cDN...    32   1.1    2
(EH630659) EST1766 LK04 Laupala kohalensis cDNA clone 106102...    34   1.1    2
(CW935095) EDCCR96TR A. castellanii, 6-8 kb library from tot...    34   1.1    2
(CK138339) AGENCOURT_16915583 NCI_CGAP_ZEmb2 Danio rerio cDN...    32   1.1    2
(EH631471) EST2578 LK04 Laupala kohalensis cDNA clone 106102...    34   1.1    2
(CK145685) AGENCOURT_16946974 NCI_CGAP_ZEmb2 Danio rerio cDN...    32   1.1    2
(EH638954) EST10062 LK04 Laupala kohalensis cDNA clone 10610...    34   1.1    2
(EH631179) EST2286 LK04 Laupala kohalensis cDNA clone 106102...    34   1.1    2
(CK146101) AGENCOURT_16916701 NCI_CGAP_ZEmb2 Danio rerio cDN...    32   1.1    2
(EH632996) EST4103 LK04 Laupala kohalensis cDNA clone 106102...    34   1.1    2
(EH635167) EST6275 LK04 Laupala kohalensis cDNA clone 106102...    34   1.1    2
(EH642113) EST13221 LK04 Laupala kohalensis cDNA clone 10610...    34   1.1    2
(ES699569) r_014a_d01 Lolium perenne r Lolium perenne cDNA, ...    34   1.1    2
(EH641041) EST12149 LK04 Laupala kohalensis cDNA clone 10610...    34   1.1    2
(BM070703) fu98c09.y1 zebrafish adult brain Danio rerio cDNA...    32   1.1    2
(EH642082) EST13190 LK04 Laupala kohalensis cDNA clone 10610...    34   1.1    2
(EH637264) EST8372 LK04 Laupala kohalensis cDNA clone 106102...    34   1.1    2
(AU245602) Lolium multiflorum cDNA clone:CA001E12-5.               34   1.1    2
(AU245578) Lolium multiflorum cDNA clone:CA001C10-5.               34   1.1    2
(FD480514) NADI-aaa39b09.g1 Rhodnius_prolixus_EST_NADI_5th_i...    36   1.1    2
(AU086369) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    36   1.4    3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   1.4    8
(AB173923) Macaca fascicularis brain cDNA clone: QmoA-11183,...    46   1.5    1
(CU638744) Podospora anserina genomic DNA chromosome 6, supe...    46   1.5    1
(AY007865) Saccharomyces transvaalensis strain CBS7662 small...    46   1.5    1
(AM479538) Vitis vinifera, whole genome shotgun sequence, co...    46   1.5    1
(AM455825) Vitis vinifera contig VV78X089944.9, whole genome...    46   1.5    1
(AC149384) Phakopsora pachyrhizi clone JGIAFNA-5B10, complet...    46   1.5    1
(AC149316) Phakopsora pachyrhizi clone JGIAFNA-101K14, compl...    46   1.5    1
(AP000943) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    46   1.5    1
(AL162254) Human DNA sequence from clone RP11-64P14 on chrom...    46   1.5    1
(AF286887) Homo sapiens chromosome 8 clone RP11-206N20 map q...    46   1.5    1
(AC104350) Homo sapiens chromosome 8, clone RP11-1112C15, co...    46   1.5    1
(AC006313) Homo sapiens chromosome 9, clone hRPK.465_F_21, c...    46   1.5    1

>(AU269204) Dictyostelium discoideum vegetative cDNA clone:VSI768,
           3' end single read.
          Length = 635

 Score =  948 bits (478), Expect(2) = 0.0
 Identities = 478/478 (100%)
 Strand = Plus / Plus


Query: 1   aacaaatataaatacaatgacaacacaagttccaaaaattaaatgggcagaaagaccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacaaatataaatacaatgacaacacaagttccaaaaattaaatgggcagaaagaccaga 60


Query: 61  ctttgtttatattacaattgaagcagatgttgaatctccagttgttaaattcgaatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttgtttatattacaattgaagcagatgttgaatctccagttgttaaattcgaatcaaa 120


Query: 121 caaaatttcattcgaaggtaaaggtaaagatggtaaacaatacgccttttcctatgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaatttcattcgaaggtaaaggtaaagatggtaaacaatacgccttttcctatgattt 180


Query: 181 attcaaagaaatcgatgctgataaatcatcaactgatttcaaaacaagcagatacccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcaaagaaatcgatgctgataaatcatcaactgatttcaaaacaagcagatacccaag 240


Query: 241 attaaaattagttaaaaaagatgccggtccatattggaactttttattaaaagataaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaaaattagttaaaaaagatgccggtccatattggaactttttattaaaagataaaaa 300


Query: 301 gaaagacaagtttgttgaaaccgattggactctttggaaggatgaagatgaagtagaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaagacaagtttgttgaaaccgattggactctttggaaggatgaagatgaagtagaaga 360


Query: 361 aaatgaagatgctggtaaattcggtaactttgatatgggtggcatggatatgcaacaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatgaagatgctggtaaattcggtaactttgatatgggtggcatggatatgcaacaaat 420


Query: 421 gatgcaaggcatgggaggtatgccagatggtatgaatttcgatgatatggatgatatg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgcaaggcatgggaggtatgccagatggtatgaatttcgatgatatggatgatatg 478

 Score =  131 bits (66), Expect(2) = 0.0
 Identities = 66/66 (100%)
 Strand = Plus / Plus


Query: 540 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 599


Query: 600 tccccc 605
           ||||||
Sbjct: 600 tccccc 605

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 753,098,967
Number of extensions: 48441547
Number of successful extensions: 4099159
Number of sequences better than 10.0: 347
Length of query: 634
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 611
Effective length of database: 93,106,754,628
Effective search space: 56888227077708
Effective search space used: 56888227077708
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.13
Homology vs Protein 
Query= Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Contig-U14906-1Q.Seq.d
         (634 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY279517_1(AY279517|pid:none) Branchiostoma belcheri tsingtaunes...    67   6e-10
(Q23280) RecName: Full=Uncharacterized protein ZC395.10;  &T2754...    65   2e-09
AM270325_29(AM270325|pid:none) Aspergillus niger contig An14c018...    65   2e-09
AM494971_445(AM494971|pid:none) Leishmania braziliensis chromoso...    62   2e-08
(Q11118) RecName: Full=Protein wos2; AltName: Full=p21;  &CU3296...    61   2e-08
(Q9VH95) RecName: Full=Uncharacterized protein CG16817;  &AE0142...    61   2e-08
AM502253_459(AM502253|pid:none) Leishmania infantum chromosome 35.     60   5e-08
CU928179_106(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    60   5e-08
CR382123_618(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    59   9e-08
CR380957_492(CR380957|pid:none) Candida glabrata strain CBS138 c...    59   2e-07
DQ172836_1(DQ172836|pid:none) Dactylis glomerata p23 mRNA, compl...    59   2e-07
AP007166_496(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    58   3e-07
AB206399_1(AB206399|pid:none) Bombyx mori mRNA for p23-like prot...    57   4e-07
AE014187_508(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    56   8e-07
AM910994_527(AM910994|pid:none) Plasmodium knowlesi strain H chr...    55   2e-06
AF153128_1(AF153128|pid:none) Brassica napus p23 (p23) mRNA, com...    55   2e-06
AM502252_23(AM502252|pid:none) Leishmania infantum chromosome 34.      54   3e-06
AY814798_1(AY814798|pid:none) Schistosoma japonicum SJCHGC02843 ...    54   5e-06
FN323809_1(FN323809|pid:none) Schistosoma japonicum isolate Anhu...    54   5e-06
AK340120_1(AK340120|pid:none) Acyrthosiphon pisum ACYPI001190 mR...    53   6e-06
FN357541_15(FN357541|pid:none) Schistosoma mansoni genome sequen...    52   1e-05
AF204783_1(AF204783|pid:none) Lycopersicon esculentum ripening r...    52   1e-05
AC138004_6(AC138004|pid:none) Oryza sativa chromosome 3 BAC OSJN...    52   2e-05
FN316666_1(FN316666|pid:none) Schistosoma japonicum isolate Anhu...    52   2e-05
BT061748_1(BT061748|pid:none) Zea mays full-length cDNA clone ZM...    51   2e-05
(P0C8Z0) RecName: Full=Uncharacterized protein OsI_027940;             50   5e-05
(Q6YYB0) RecName: Full=Uncharacterized protein Os08g0359500;  &A...    50   5e-05
AE017351_103(AE017351|pid:none) Cryptococcus neoformans var. neo...    49   2e-04
BT050592_1(BT050592|pid:none) Medicago truncatula clone MTYF5_F6...    49   2e-04
CU638743_723(CU638743|pid:none) Podospora anserina genomic DNA c...    48   2e-04
CR382137_846(CR382137|pid:none) Debaryomyces hansenii strain CBS...    48   2e-04
DQ144983_1(DQ144983|pid:none) Symbiodinium sp. C3 p23 mRNA, comp...    48   3e-04
(Q6ID70) RecName: Full=Uncharacterized protein At3g03773;  &AY64...    47   4e-04
CP000584_38(CP000584|pid:none) Ostreococcus lucimarinus CCE9901 ...    47   5e-04
BC055174_1(BC055174|pid:none) Danio rerio protein tyrosine phosp...    47   6e-04
BX571883_1(BX571883|pid:none) Zebrafish DNA sequence from clone ...    47   6e-04
AL669998_18(AL669998|pid:none) Neurospora crassa DNA linkage gro...    46   8e-04
AY648333_1(AY648333|pid:none) Arabidopsis thaliana hypothetical ...    45   0.001
BT043144_1(BT043144|pid:none) Zea mays full-length cDNA clone ZM...    45   0.002
BT067787_1(BT067787|pid:none) Zea mays full-length cDNA clone ZM...    45   0.002
EU962538_1(EU962538|pid:none) Zea mays clone 243530 co-chaperone...    44   0.003
AC084022_18(AC084022|pid:none) Oryza sativa chromosome 3 BAC OSJ...    44   0.004
BT088111_1(BT088111|pid:none) Zea mays full-length cDNA clone ZM...    44   0.005
EU961566_1(EU961566|pid:none) Zea mays clone 236578 co-chaperone...    44   0.005
AY622861_1(AY622861|pid:none) Oncorhynchus mykiss progesterone r...    44   0.005
EU967936_1(EU967936|pid:none) Zea mays clone 311540 co-chaperone...    44   0.005
BT082364_1(BT082364|pid:none) Anoplopoma fimbria clone afim-evh-...    43   0.007
AM428890_3(AM428890|pid:none) Vitis vinifera contig VV78X024534....    42   0.011
AK027421_1(AK027421|pid:none) Homo sapiens cDNA FLJ14515 fis, cl...    42   0.015
BX538350_105(BX538350|pid:none) Cryptosporidium parvum chromosom...    42   0.015
BT049409_1(BT049409|pid:none) Salmo salar clone ssal-eve-577-239...    42   0.019
DQ680014_1(DQ680014|pid:none) Toxoplasma gondii P23 co-chaperone...    41   0.033
BT068686_1(BT068686|pid:none) Zea mays full-length cDNA clone ZM...    41   0.033
AM055943_237(AM055943|pid:none) Toxoplasma gondii RH, genomic DN...    41   0.033
AJ297951_1(AJ297951|pid:none) Arabidopsis thaliana mRNA for p23 ...    41   0.033
CR940348_472(CR940348|pid:none) Theileria annulata strain Ankara...    39   0.096
EU975543_1(EU975543|pid:none) Zea mays clone 492129 unknown mRNA.      39   0.13
BT056851_1(BT056851|pid:none) Salmo salar clone ssal-rgb2-539-14...    37   0.36
AJ829922_1(AJ829922|pid:none) Tribolium castaneum mRNA for twist...    37   0.62
DQ214929_1(DQ214929|pid:none) Taeniopygia guttata clone 0061P003...    35   1.4
FN323831_1(FN323831|pid:none) Schistosoma japonicum isolate Anhu...    35   2.4
CR940347_896(CR940347|pid:none) Theileria annulata strain Ankara...    34   4.0
AY373584_1(AY373584|pid:none) Emericella nidulans diploid state ...    34   4.0
AJ938182_419(AJ938182|pid:none) Staphylococcus aureus RF122 comp...    33   5.2
FN316665_1(FN316665|pid:none) Schistosoma japonicum isolate Anhu...    33   6.9
FN357541_16(FN357541|pid:none) Schistosoma mansoni genome sequen...    33   9.0

>AY279517_1(AY279517|pid:none) Branchiostoma belcheri tsingtaunese
           p23-like protein mRNA, complete cds.
          Length = 170

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
 Frame = +2

Query: 32  PKIKWAERPDFVYITIEADV----ESPVVKFESNKISFEGKG-KDGKQYAFSYDLFKEID 196
           P + WA+R D + +TI+ +     ++  V      +SF GKG  + K Y      FKE++
Sbjct: 8   PAVYWAQRDDVLILTIQVEDIDRDKNRKVTLNEKSLSFSGKGGAENKDYHCDITFFKEVN 67

Query: 197 ADKSSTDFKTSRYPRLKLVKKDAGPYWNXXXXXXXXXXXVETDWTLWKDEDEVEENE 367
            ++S  +  T+R  +  + KKD GPYW+           + TD++ WKDED+ ++ +
Sbjct: 68  VEESKYN-ATARGLKFLIKKKDKGPYWSRLTQDKMKLHWLRTDFSYWKDEDDSDDED 123

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 809,381,189
Number of extensions: 13929294
Number of successful extensions: 35632
Number of sequences better than 10.0: 66
Number of HSP's gapped: 35580
Number of HSP's successfully gapped: 66
Length of query: 211
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 88
Effective length of database: 653,084,107
Effective search space: 57471401416
Effective search space used: 57471401416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.79  gvh: 0.22  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: plasma membrane
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for Contig-U14906-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0