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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02845-1
Contig ID Contig-U02845-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U02845-1 (Contig-U02845-1Q) /CSM_Contig/Contig-U02845-1Q.Seq.d
ATTTGTATTATTCTCCTATTAATAAAGAAATAAATAAATAAAAGAAATGG
AAAATAATAGTAATTGTAACCATTGCCAAACAATCATAAAAGAAATAAGA
AAACAAGACAATGTTAATTTACAAGCTCATGAGAAACAACCAAATGATGT
TGGTACAATAAAATATAGGGCAGACCAAGCCGGTCATTGGAGGGGTGCTT
TTAATGGTTTTGATTATATAATCTTTGGTGTTGCTGTTGGTGCATTTTCA
AACATTAATATGTCTTATTTTTGGGCTACTATTCTAACAATAGGATTAAA
CTTTTTTATTCTCCTTGGAAGACAAGCTTTAATGTGGGAATATGATTTAA
AAAAGCTTGATGGAAAATTAAGTATAGATGCATCTTATTTTAATGCATTA
GCTCCAGTGGATAGTGTATATGGAAATAAAAGAGGCGTATTAATTGTCGT
TATAATTGGAATTATCACATGTACTGCTGGTTTAGTAGAACAAGCAAGAA
TTTATAAAGATTCATTTCAAACTCCTTATTTTTATTGGGAACCATCACCA
GATTTCCAATTAAATCCAATATTCAATATGTTTGCAATGAACCTTTTGAA
CCTTTTTTGTGCATTTTTAAGTCTATATTTCTATTTTAAATTAACTGGAT
GTGTTAGCTATGAATTTGACGTCANAGGTCAAAAATCCCTATTTTTTTAT
TCACCATGTATTGGAAATAGAACCGTTATTATCAATAATGGAAATAATAA
TCAAAATCAAGGTGGTTCTATTAGCCAAACCAATAATAATACTTCTAACC
AACCAATATATTACCATCCAAACAAATTGGAACTTGTTATGATTTTGTTG
GATAAAAAACATTTGAATATTTTTGCTAGGGAATGCAGGGCAAATCATGT
TTATTTGGAATTGGAATTTGATNAAACTAGAGGACGAAGAATTT
Gap no gap
Contig length 944
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4441444
End point 4440500
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U02845
List of clone(s) 

est1=AFJ455E,1,945
Translated Amino Acid sequence 
fvlfsy**rnk*IKEMENNSNCNHCQTIIKEIRKQDNVNLQAHEKQPNDVGTIKYRADQA
GHWRGAFNGFDYIIFGVAVGAFSNINMSYFWATILTIGLNFFILLGRQALMWEYDLKKLD
GKLSIDASYFNALAPVDSVYGNKRGVLIVVIIGIITCTAGLVEQARIYKDSFQTPYFYWE
PSPDFQLNPIFNMFAMNLLNLFCAFLSLYFYFKLTGCVSYEFDVXGQKSLFFYSPCIGNR
TVIINNGNNNQNQGGSISQTNNNTSNQPIYYHPNKLELVMILLDKKHLNIFARECRANHV
YLELEFDXTRGRRI
Translated Amino Acid sequence (All Frames) 
Frame A:
iciilllikk*inkrngk***l*plpnnhkrnkktrqc*ftss*ettk*cwynki*grps
rslegcf*wf*lynlwcccwcifkh*yvlflgyysnnriklfyspwktsfnvgi*fkka*
wkikyrcilf*cisssg*ciwk*krrincrynwnyhmycwfsrtsknl*rfisnslfllg
titrfpiksniqyvcnepfepflcifksiflf*inwmc*l*i*rxrskipiflftmywk*
nryyq*wk**sksrwfy*pnq**yf*ptnilpskqigtcydfvg*ktfeyfc*gmqgksc
lfgigi*xn*rtkn


Frame B:
fvlfsy**rnk*IKEMENNSNCNHCQTIIKEIRKQDNVNLQAHEKQPNDVGTIKYRADQA
GHWRGAFNGFDYIIFGVAVGAFSNINMSYFWATILTIGLNFFILLGRQALMWEYDLKKLD
GKLSIDASYFNALAPVDSVYGNKRGVLIVVIIGIITCTAGLVEQARIYKDSFQTPYFYWE
PSPDFQLNPIFNMFAMNLLNLFCAFLSLYFYFKLTGCVSYEFDVXGQKSLFFYSPCIGNR
TVIINNGNNNQNQGGSISQTNNNTSNQPIYYHPNKLELVMILLDKKHLNIFARECRANHV
YLELEFDXTRGRRI


Frame C:
lyyspinkeink*kkwkiivivtiakqs*kk*enktmliyklmrnnqmmlvq*nigqtkp
viggvllmvlii*slvlllvhfqtliclifgllf*q*d*tflfsledkl*cgnmi*kslm
en*v*mhlilmh*lqwivymeikeay*lsl*lelshvllv**nkqefikihfkllifign
hhqisn*iqysiclq*tf*tffvhf*vyisiln*ldvlamnltsxvknpyffihhvleie
pllsimeiiikikvvllakpiiilltnqyitiqtnwnll*fcwikni*ifllgnagqimf
iwnwnlxkledeef
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02845-1 (Contig-U02845-1Q)
/CSM_Contig/Contig-U02845-1Q.Seq.d
         (944 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02845-1 (Contig-U02845-1Q) /CSM_Contig/Conti...  1691  0.0
Contig-U13208-1 (Contig-U13208-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U11924-1 (Contig-U11924-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U10450-1 (Contig-U10450-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U14277-1 (Contig-U14277-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U11503-1 (Contig-U11503-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U11307-1 (Contig-U11307-1Q) /CSM_Contig/Conti...    36  0.067

>Contig-U02845-1 (Contig-U02845-1Q) /CSM_Contig/Contig-U02845-1Q.Seq.d
          Length = 944

 Score = 1691 bits (853), Expect = 0.0
 Identities = 873/880 (99%)
 Strand = Plus / Plus

                                                                       
Query: 65  tgtaaccattgccaaacaatcataaaagaaataagaaaacaagacaatgttaatttacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  tgtaaccattgccaaacaatcataaaagaaataagaaaacaagacaatgttaatttacaa 124

                                                                       
Query: 125 gctcatgagaaacaaccaaatgatgttggtacaataaaatatagggcagaccaagccggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gctcatgagaaacaaccaaatgatgttggtacaataaaatatagggcagaccaagccggt 184

                                                                       
Query: 185 cattggaggggtgcttttaatggttttgattatataatctttggtgttgctgttggtgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cattggaggggtgcttttaatggttttgattatataatctttggtgttgctgttggtgca 244

                                                                       
Query: 245 ttttcaaacattaatatgtcttatttttgggctactattctaacaataggattaaacttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttttcaaacattaatatgtcttatttttgggctactattctaacaataggattaaacttt 304

                                                                       
Query: 305 tttattctccttggaagacaagctttaatgtgggaatatgatttaaaaaagcttgatgga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttattctccttggaagacaagctttaatgtgggaatatgatttaaaaaagcttgatgga 364

                                                                       
Query: 365 aaattaagtatagatgcatcttattttaatgcattagctccagtggatagtgtatatgga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaattaagtatagatgcatcttattttaatgcattagctccagtggatagtgtatatgga 424

                                                                       
Query: 425 aataaaagaggcgtattaattgtcgttataattggaattatcacatgtactgctggttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aataaaagaggcgtattaattgtcgttataattggaattatcacatgtactgctggttta 484

                                                                       
Query: 485 gtagaacaagcaagaatttataaagattcatttcaaactccttatttttattgggaacca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtagaacaagcaagaatttataaagattcatttcaaactccttatttttattgggaacca 544

                                                                       
Query: 545 tcaccagatttccaattaaatccaatattcaatatgtttgcaatgaaccttttgaacctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcaccagatttccaattaaatccaatattcaatatgtttgcaatgaaccttttgaacctt 604

                                                                       
Query: 605 ttttgtgcatttttaagtctatatttctattttaaattaactggatgtgttagctatgaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttttgtgcatttttaagtctatatttctattttaaattaactggatgtgttagctatgaa 664

                                                                       
Query: 665 tttgacgtcanaggtcaaaaatccctannnnnnnattcaccatgtattggaaatagaacc 724
           |||||||||||||||||||||||||||       ||||||||||||||||||||||||||
Sbjct: 665 tttgacgtcanaggtcaaaaatccctatttttttattcaccatgtattggaaatagaacc 724

                                                                       
Query: 725 gttattatcaataatggaaataataatcaaaatcaaggtggttctattagccaaaccaat 784
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gttattatcaataatggaaataataatcaaaatcaaggtggttctattagccaaaccaat 784

                                                                       
Query: 785 aataatacttctaaccaaccaatatattaccatccaaacaaattggaacttgttatgatt 844
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aataatacttctaaccaaccaatatattaccatccaaacaaattggaacttgttatgatt 844

                                                                       
Query: 845 ttgttggataaaaaacatttgaatatttttgctagggaatgcagggcaaatcatgtttat 904
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ttgttggataaaaaacatttgaatatttttgctagggaatgcagggcaaatcatgtttat 904

                                                   
Query: 905 ttggaattggaatttgatnaaactagaggacgaagaattt 944
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ttggaattggaatttgatnaaactagaggacgaagaattt 944


 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  atttgtattattctcctat 19
          |||||||||||||||||||
Sbjct: 1  atttgtattattctcctat 19


>Contig-U13208-1 (Contig-U13208-1Q) /CSM_Contig/Contig-U13208-1Q.Seq.d
          Length = 635

 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 742 aaataataatcaaaatcaa 760
           |||||||||||||||||||
Sbjct: 187 aaataataatcaaaatcaa 205


 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 742 aaataataatcaaaat 757
           ||||||||||||||||
Sbjct: 319 aaataataatcaaaat 334


>Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Contig-U12467-1Q.Seq.d
          Length = 1279

 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 739 tggaaataataatcaaaat 757
           |||||||||||||||||||
Sbjct: 760 tggaaataataatcaaaat 778


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,481
Number of Sequences: 6905
Number of extensions: 14481
Number of successful extensions: 1304
Number of sequences better than 10.0: 162
length of query: 944
length of database: 5,674,871
effective HSP length: 16
effective length of query: 928
effective length of database: 5,564,391
effective search space: 5163754848
effective search space used: 5163754848
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.23
Homology vs DNA 
Query= Contig-U02845-1 (Contig-U02845-1Q) /CSM_Contig/Contig-U02845-1Q.Seq.d
         (944 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ327228) Dictyostelium discoideum cDNA clone:dda19n14, 5' ...  1076   0.0    1
(BJ344541) Dictyostelium discoideum cDNA clone:dda19n14, 3' ...   716   0.0    2
(AC192141) Pan troglodytes BAC clone CH251-584D4 from chromo...    52   0.040  1
(AL121867) Human DNA sequence from clone RP11-405O21 on chro...    52   0.040  1
(EC824800) SME00002652 esmbsro2 Sawyeria marylandensis cDNA,...    48   0.62   1
(CV786342) zaa12d07.x1 D yakuba testes cDNA Drosophila yakub...    42   1.3    2
(EG452637) AYBBP78TF pooled cDNA populations Arabidopsis tha...    36   1.3    2
(EG452638) AYBBP78TR pooled cDNA populations Arabidopsis tha...    36   1.4    2
(CT492558) A BAC library has been constructed from cultivar ...    44   1.6    2
(BX324216) Zebrafish DNA sequence from clone CH211-222K6 in ...    44   1.6    3
(EJ872247) 1093018351968 Global-Ocean-Sampling_GS-30-02-01-1...    32   1.7    2
(EJ913649) 1093018548672 Global-Ocean-Sampling_GS-30-02-01-1...    32   1.7    2
(BM163001) EST565524 PyBS Plasmodium yoelii yoelii cDNA clon...    44   1.7    2
(Z72501) Caenorhabditis elegans Cosmid C04C11.                     34   1.8    6
(CN003531) ip17g11.g1 Brain - Cerebellum Library (DOGEST8) C...    44   1.8    2
(BM161121) EST563644 PyBS Plasmodium yoelii yoelii cDNA clon...    44   1.8    2
(CW797762) WiscDsLox453-456B16 Arabidopsis thaliana T-DNA in...    36   1.8    2
(EG452636) AYBBP77TR pooled cDNA populations Arabidopsis tha...    36   2.2    2
(BX296539) Zebrafish DNA sequence from clone DKEYP-13E2 in l...    46   2.4    1
(AC165428) Strongylocentrotus purpuratus BAC clone contig co...    46   2.4    1
(FP016007) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.4    1
(CU929550) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.4    1
(AC224737) Bos taurus clone CH240-477I11, WORKING DRAFT SEQU...    46   2.4    1
(AC222366) Bos taurus clone CH240-416F3, WORKING DRAFT SEQUE...    46   2.4    1
(AC175856) Strongylocentrotus purpuratus clone R3-3038P5, WO...    46   2.4    1
(EK189836) 1095460014654 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.4    1
(CC290293) CH261-60D5_Sp6.1 CH261 Gallus gallus genomic clon...    46   2.4    1
(EY057369) CATF10524.fwd CATF Artemisia annua, Tanzanian, fr...    46   2.4    1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   2.5    6
(AM477969) Vitis vinifera contig VV78X048094.1, whole genome...    44   2.5    2
(EK280857) 1095462294721 Global-Ocean-Sampling_GS-31-01-01-1...    34   3.5    3
(CR931740) Medicago truncatula chromosome 5 clone mth2-67g10...    36   3.8    6
(EJ076198) 1095458123978 Global-Ocean-Sampling_GS-26-01-01-1...    34   4.0    3
(BJ365048) Dictyostelium discoideum cDNA clone:ddc33p19, 5' ...    42   4.1    2
(BJ369705) Dictyostelium discoideum cDNA clone:ddc51a14, 5' ...    42   4.6    2
(AM466486) Vitis vinifera contig VV78X029289.2, whole genome...    44   4.7    2
(CU914504) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   4.8    6
(BJ370518) Dictyostelium discoideum cDNA clone:ddc54l09, 5' ...    42   4.8    2
(BJ368302) Dictyostelium discoideum cDNA clone:ddc46k01, 5' ...    42   5.1    2
(BJ367351) Dictyostelium discoideum cDNA clone:ddc42j08, 5' ...    42   5.1    2
(BJ367699) Dictyostelium discoideum cDNA clone:ddc43m16, 5' ...    42   5.3    2
(BJ366607) Dictyostelium discoideum cDNA clone:ddc39h18, 5' ...    42   5.4    2
(BJ366048) Dictyostelium discoideum cDNA clone:ddc37f18, 5' ...    42   5.5    2
(BJ364112) Dictyostelium discoideum cDNA clone:ddc30c02, 5' ...    42   5.5    2
(BJ369543) Dictyostelium discoideum cDNA clone:ddc50n22, 5' ...    42   5.7    2
(BJ394268) Dictyostelium discoideum cDNA clone:dds34p08, 5' ...    42   5.7    2
(BJ367979) Dictyostelium discoideum cDNA clone:ddc44e03, 5' ...    42   6.2    2
(BH152572) ENTPS25TF Entamoeba histolytica Sheared DNA Entam...    34   6.2    2
(AZ685051) ENTIA21TF Entamoeba histolytica Sheared DNA Entam...    34   6.2    2
(AZ674442) ENTKW79TR Entamoeba histolytica Sheared DNA Entam...    34   6.2    2
(BJ366324) Dictyostelium discoideum cDNA clone:ddc38g18, 5' ...    42   6.2    2
(ED044614) AUAC-aal92a06.g1 Ascaris suum whole genome shotgu...    36   6.9    2
(AC170547) Bos taurus clone CH240-228N17, WORKING DRAFT SEQU...    32   8.3    7
(AC105294) Sus scrofa clone RP44-41M19, WORKING DRAFT SEQUEN...    36   8.7    6
(EJ140391) 1092343646244 Global-Ocean-Sampling_GS-27-01-01-1...    40   8.8    2
(AP001799) Homo sapiens genomic DNA, chromosome 18q12 clone:...    38   9.6    6
(AC115697) Mus musculus chromosome 7, clone RP24-233E11, com...    44   9.7    1
(AP006347) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   9.7    1
(AM483807) Vitis vinifera, whole genome shotgun sequence, co...    44   9.7    1
(AM472539) Vitis vinifera, whole genome shotgun sequence, co...    44   9.7    1
(AM467652) Vitis vinifera contig VV78X196289.8, whole genome...    44   9.7    1
(AM451134) Vitis vinifera contig VV78X269040.8, whole genome...    44   9.7    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    44   9.7    1
(AC010054) Drosophila melanogaster 3L BAC RP98-15E10 (Roswel...    44   9.7    1
(AC009371) Drosophila melanogaster 3L BAC RP98-44K7 (Roswell...    44   9.7    1
(AC103591) Homo sapiens chromosome 1 clone RP11-386I14, comp...    44   9.7    1
(AC093118) Homo sapiens chromosome 1 clone RP11-156K6, compl...    44   9.7    1
(AC025160) Homo sapiens 12 BAC RP11-526P6 (Roswell Park Canc...    44   9.7    1
(AC007561) Homo sapiens BAC clone RP11-394E1 from 2, complet...    44   9.7    1
(AC136528) Rattus norvegicus clone CH230-24F1, *** SEQUENCIN...    44   9.7    1
(AC121033) Rattus norvegicus clone CH230-99M8, *** SEQUENCIN...    44   9.7    1
(AC112500) Homo sapiens chromosome 12 clone RP11-11C16, WORK...    44   9.7    1
(AC095772) Rattus norvegicus clone CH230-9J20, *** SEQUENCIN...    44   9.7    1
(CU928707) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.7    1
(AC087759) Homo sapiens chromosome 15 clone RP11-164J13 map ...    44   9.7    1
(CU372900) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.7    1
(CR751223) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   9.7    1
(AL139217) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   9.7    1
(AC231790) Oryza minuta clone OM__Ba0216G08, *** SEQUENCING ...    44   9.7    1
(AC194534) Pan troglodytes chromosome 19 clone CH251-649M9, ...    44   9.7    1
(AC186951) Loxodonta africana clone VMRC15-414C10, WORKING D...    44   9.7    1
(AC186328) Zea mays chromosome 1 clone ZMMBBb-349I4; ZMMBBb0...    44   9.7    1
(AC166890) Loxodonta africana clone VMRC15-222I3, WORKING DR...    44   9.7    1
(AC025209) Homo sapiens clone RP11-156M7, WORKING DRAFT SEQU...    44   9.7    1
(AC019594) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   9.7    1
(AC011172) Homo sapiens clone RP11-11C16, WORKING DRAFT SEQU...    44   9.7    1
(EJ467932) 1095403391760 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.7    1
(EI245276) OR__Ba0045N02.f OR__Ba Oryza rufipogon genomic cl...    44   9.7    1
(DU886029) 402181 Tomato HindIII BAC Library Solanum lycoper...    44   9.7    1
(DU604843) OO__Ba0103D11.f OO__Ba Oryza officinalis genomic ...    44   9.7    1
(CZ539830) SRAA-aad28a09.g1 Strongyloides ratti whole genome...    44   9.7    1
(CZ535251) SRAA-aac96b03.b1 Strongyloides ratti whole genome...    44   9.7    1
(CZ535068) SRAA-aac95b03.b1 Strongyloides ratti whole genome...    44   9.7    1
(CZ534559) SRAA-aac91h07.g1 Strongyloides ratti whole genome...    44   9.7    1
(CZ534378) SRAA-aac90h07.g1 Strongyloides ratti whole genome...    44   9.7    1
(CZ530118) SRAA-aac65b09.b1 Strongyloides ratti whole genome...    44   9.7    1
(CW832070) OP__Ba0089L04.r OP__Ba Oryza punctata genomic clo...    44   9.7    1
(CW522201) OP__Ba0032O23.f OP__Ba Oryza punctata genomic clo...    44   9.7    1
(EC823204) SME00006352 esmbsro2 Sawyeria marylandensis cDNA,...    44   9.7    1
(DV181829) R31 Reproductive larvae-specific SSH library Copi...    44   9.7    1
(CN247705) EST013601 Mycelium and yeast cells from Paracocci...    44   9.7    1
(CN051673) v8_p6_f11_triplex_5.1ld_ V6 Ambystoma mexicanum c...    44   9.7    1
(CN051532) v8_p5_f17_triplex_5ld_ V6 Ambystoma mexicanum cDN...    44   9.7    1
(CN051390) v8_p2_e1_triplex_5ld_ V6 Ambystoma mexicanum cDNA...    44   9.7    1
(CN051132) v8_p16_e9_triplex_5.1ld_ V6 Ambystoma mexicanum c...    44   9.7    1
(CN051110) v8_p16_c24_triplex_5.1l V6 Ambystoma mexicanum cD...    44   9.7    1
(CN051107) v8_p16_c18_triplex_5.1l V6 Ambystoma mexicanum cD...    44   9.7    1
(CN050962) v8_p15_a18_triplex_5.1l V6 Ambystoma mexicanum cD...    44   9.7    1
(CN050874) v8_p14_g7_triplex_5.1ld_ V6 Ambystoma mexicanum c...    44   9.7    1
(CN050796) v8_p11_p12_triplex_5.1l V6 Ambystoma mexicanum cD...    44   9.7    1
(CN050765) v8_p11_l19_triplex_5.1l V6 Ambystoma mexicanum cD...    44   9.7    1
(BF297615) 054PbA05 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ...    44   9.7    1
(FD216657) CBZF13714.g1 CBZF: Normalized blue catfish cDNA l...    44   9.7    1
(FD161683) CBZC5201.g1 CBZC: Normalized blue catfish cDNA li...    44   9.7    1
(FD099477) CBFH611.g4 CBFH: Normalized blue catfish cDNA lib...    44   9.7    1
(FD001783) CBNH14685.g1 CBNH: Normalized blue catfish cDNA l...    44   9.7    1
(EY643851) CAWW7050.fwd CAWW Capitella sp. I ECS-2004 Subtra...    44   9.7    1
(EY643850) CAWW7050.rev CAWW Capitella sp. I ECS-2004 Subtra...    44   9.7    1
(CP001287) Cyanothece sp. PCC 8801, complete genome.               44   9.7    1
(CP001251) Dictyoglomus turgidum DSM 6724, complete genome.        44   9.7    1
(AC158721) Rhinolophus ferrumequinum clone VMRC7-209N12, WOR...    34   9.9    6

>(BJ327228) Dictyostelium discoideum cDNA clone:dda19n14, 5' end,
           single read.
          Length = 634

 Score = 1076 bits (543), Expect = 0.0
 Identities = 543/543 (100%)
 Strand = Plus / Plus


Query: 92  gaaataagaaaacaagacaatgttaatttacaagctcatgagaaacaaccaaatgatgtt 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  gaaataagaaaacaagacaatgttaatttacaagctcatgagaaacaaccaaatgatgtt 151


Query: 152 ggtacaataaaatatagggcagaccaagccggtcattggaggggtgcttttaatggtttt 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ggtacaataaaatatagggcagaccaagccggtcattggaggggtgcttttaatggtttt 211


Query: 212 gattatataatctttggtgttgctgttggtgcattttcaaacattaatatgtcttatttt 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gattatataatctttggtgttgctgttggtgcattttcaaacattaatatgtcttatttt 271


Query: 272 tgggctactattctaacaataggattaaacttttttattctccttggaagacaagcttta 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgggctactattctaacaataggattaaacttttttattctccttggaagacaagcttta 331


Query: 332 atgtgggaatatgatttaaaaaagcttgatggaaaattaagtatagatgcatcttatttt 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atgtgggaatatgatttaaaaaagcttgatggaaaattaagtatagatgcatcttatttt 391


Query: 392 aatgcattagctccagtggatagtgtatatggaaataaaagaggcgtattaattgtcgtt 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aatgcattagctccagtggatagtgtatatggaaataaaagaggcgtattaattgtcgtt 451


Query: 452 ataattggaattatcacatgtactgctggtttagtagaacaagcaagaatttataaagat 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ataattggaattatcacatgtactgctggtttagtagaacaagcaagaatttataaagat 511


Query: 512 tcatttcaaactccttatttttattgggaaccatcaccagatttccaattaaatccaata 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcatttcaaactccttatttttattgggaaccatcaccagatttccaattaaatccaata 571


Query: 572 ttcaatatgtttgcaatgaaccttttgaaccttttttgtgcatttttaagtctatatttc 631
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttcaatatgtttgcaatgaaccttttgaaccttttttgtgcatttttaagtctatatttc 631


Query: 632 tat 634
           |||
Sbjct: 632 tat 634

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,245,532,376
Number of extensions: 75324226
Number of successful extensions: 6103541
Number of sequences better than 10.0: 123
Length of query: 944
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 920
Effective length of database: 99,340,224,878
Effective search space: 91393006887760
Effective search space used: 91393006887760
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.21
Homology vs Protein 
Query= Contig-U02845-1 (Contig-U02845-1Q) /CSM_Contig/Contig-U02845-1Q.Seq.d
         (944 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX908798_336(BX908798|pid:none) Parachlamydia-related symbiont U...    35   2.9
AJ493124_8(AJ493124|pid:none) Varroa destructor complete mitocho...    35   4.9
CP000685_1260(CP000685|pid:none) Flavobacterium johnsoniae UW101...    34   6.4
BA000030_2774(BA000030|pid:none) Streptomyces avermitilis MA-468...    34   8.3

>BX908798_336(BX908798|pid:none) Parachlamydia-related symbiont
           UWE25, complete genome.
          Length = 602

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 922 IKFQFQINMICPAFPSKNIQMFFIQQNHNKFQFVWMVIYWLVRSIIIGLANR 767
           +KF  +I+++C      ++  FF   N ++FQ  W  I+W  + I+I    R
Sbjct: 29  LKFSERISLLCKKIFQSSLHPFFTYINRDQFQSQWREIFWGRKEIVISKRTR 80

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,429,157,706
Number of extensions: 28374206
Number of successful extensions: 64316
Number of sequences better than 10.0: 4
Number of HSP's gapped: 64275
Number of HSP's successfully gapped: 4
Length of query: 314
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 186
Effective length of database: 636,901,312
Effective search space: 118463644032
Effective search space used: 118463644032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.14  alm: 0.15  top: 0.57  tms: 0.20  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 16.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U02845-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0