| Contig-U14872-1 |
| Contig ID |
Contig-U14872-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
537 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
1187065 |
| End point |
1187605 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
2 |
| Link to clone list |
U14872 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 1. 4 |
| Homology vs DNA |
Query= Contig-U14872-1 (Contig-U14872-1Q) /CSM_Contig/Contig-U14872-1Q.Seq.d
(537 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ426455) Dictyostelium discoideum cDNA clone:ddv59e03, 5' ... 472 e-161 2
(BJ445293) Dictyostelium discoideum cDNA clone:ddv59e03, 3' ... 242 1e-85 2
(AC176450) Strongylocentrotus purpuratus clone R3-3068K14, W... 54 0.005 1
(AC173732) Strongylocentrotus purpuratus clone R3-3001E14, W... 54 0.005 1
(AC172321) Strongylocentrotus purpuratus clone R3-14G15, WOR... 54 0.005 1
(CU138549) Zebrafish DNA sequence from clone DKEY-233H2 in l... 38 0.014 2
(BC118013) Mus musculus ankyrin repeat and sterile alpha mot... 52 0.021 1
(BC115784) Mus musculus ankyrin repeat and sterile alpha mot... 52 0.021 1
(AF524030) Mus musculus harmonin-interacting ankyrin-repeat ... 52 0.021 1
(AC151052) Mus musculus BAC clone RP24-72K12 from chromosome... 52 0.021 1
(AC122853) Mus musculus BAC clone RP23-175F18 from 7, comple... 52 0.021 1
(AK008229) Mus musculus adult male small intestine cDNA, RIK... 52 0.021 1
(AZ554619) RPCI-23-175F18.TJ RPCI-23 Mus musculus genomic cl... 52 0.021 1
(BF578192) 602094695F1 NCI_CGAP_Co24 Mus musculus cDNA clone... 52 0.021 1
(DR555979) WS0327.C21_G19 WS-MC-N-A-20 Picea glauca cDNA clo... 40 0.038 2
(AC099243) Rattus norvegicus clone CH230-175K15, WORKING DRA... 38 0.050 2
(AC184638) Strongylocentrotus purpuratus clone R3-4015H3, WO... 50 0.082 1
(CW980665) KBrH004P23F KBrH, Brassica rapa HindIII BAC libra... 50 0.082 1
(EV056746) BNSCS3CT_UP_250_H03_17MAY2007_017 Brassica napus ... 50 0.082 1
(EE554606) BNQA_UP_115_A06_09NOV2005_048 Brassica napus BNQA... 50 0.082 1
(EE551984) BNQA_UP_066_C08_30MAY2005_060 Brassica napus BNQA... 50 0.082 1
(EE522921) 37RDBRH_UP_010_A04_29MAR2004_032 Brassica rapa 37... 50 0.082 1
(EE456321) BNBS6DCT_UP_005_D10_12APR2005_074 Brassica napus ... 50 0.082 1
(EE422833) 60ACAB48_UP_008_F03_01OCT2004_021 Brassica napus ... 50 0.082 1
(EE404491) 17ACDHMS_UP_010_G08_28JAN2004_052 Brassica napus ... 50 0.082 1
(EC319940) EMBRYOF088886F18 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr... 50 0.082 1
(FG553699) BN18DYSC_UP_009_F10_15FEB2008_070 BN18DYSC Brassi... 50 0.082 1
(EY504882) CBBP847.rev CBBP Hirudo medicinalis hermaphrodite... 50 0.082 1
(EY489733) CBBP17216.rev CBBP Hirudo medicinalis hermaphrodi... 50 0.082 1
(EY488581) CBBP16523.rev CBBP Hirudo medicinalis hermaphrodi... 50 0.082 1
(EY487122) CBBP15614.rev CBBP Hirudo medicinalis hermaphrodi... 50 0.082 1
(EY483866) CBBP13236.fwd CBBP Hirudo medicinalis hermaphrodi... 50 0.082 1
(EY483865) CBBP13236.rev CBBP Hirudo medicinalis hermaphrodi... 50 0.082 1
(EV142504) 0208436 Brassica napus Very early anther Brassica... 50 0.082 1
(AC201317) Strongylocentrotus purpuratus clone R3-16K5, WORK... 38 0.091 5
(EV178529) 0148360 Brassica napus Etiolated seedlings (pSPOR... 44 0.18 2
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 36 0.18 2
(AC177087) Strongylocentrotus purpuratus clone R3-4005A06, W... 34 0.19 2
(AC168717) Strongylocentrotus purpuratus clone R3-3011B2, WO... 34 0.20 2
(AC177133) Strongylocentrotus purpuratus clone R3-4014J24, W... 34 0.20 2
(ES599745) BPE00000088 Buddenbrockia plumatellae SMART cDNA ... 34 0.24 2
(BM813127) EST591220 BNIR Medicago truncatula/Meloidogyne in... 36 0.27 2
(CP000496) Pichia stipitis CBS 6054 chromosome 2, complete s... 48 0.32 1
(AC181162) Strongylocentrotus purpuratus clone R3-16C12, WOR... 48 0.32 1
(AC181153) Strongylocentrotus purpuratus clone R3-16D18, WOR... 48 0.32 1
(AC178730) Strongylocentrotus purpuratus clone R3-13D8, WORK... 48 0.32 1
(FI049649) CHO_OF6510xl13f1.ab1 CHO_OF6 Nicotiana tabacum ge... 48 0.32 1
(ET992345) CHO_OF771xh22r1.ab1 CHO_OF Nicotiana tabacum geno... 48 0.32 1
(ED530810) KBrB121L07R KBrB, Brassica rapa BamHI BAC library... 48 0.32 1
(EW720011) RS1AE15JQ RS1(AR) Raphanus sativus var. oleiformi... 48 0.32 1
(EW715399) RS1AE15TF RS1(AR) Raphanus sativus var. oleiformi... 48 0.32 1
(AC181057) Strongylocentrotus purpuratus clone R3-3049I5, WO... 40 0.34 2
(DE226986) Trifolium pratense DNA, clone:RCG19536. 32 0.63 3
(AC178082) Strongylocentrotus purpuratus clone R3-3060A11, W... 46 0.65 3
(AC132757) Rattus norvegicus clone CH230-80C20, *** SEQUENCI... 34 0.67 2
(AC176748) Strongylocentrotus purpuratus clone R3-3097G9, WO... 32 0.67 2
(AC106084) Rattus norvegicus clone CH230-121C20, *** SEQUENC... 34 0.68 2
(AC168831) Strongylocentrotus purpuratus clone R3-13D18, WOR... 34 0.69 2
(AC176841) Strongylocentrotus purpuratus clone R3-3120C6, WO... 34 0.69 2
(AC184624) Strongylocentrotus purpuratus clone R3-3027F9, WO... 34 0.69 2
(AC201110) Strongylocentrotus purpuratus clone R3-13K24, WOR... 32 0.70 2
(AC181792) Strongylocentrotus purpuratus clone R3-1029J8, WO... 32 0.70 2
(AC175921) Strongylocentrotus purpuratus clone R3-12M1, WORK... 32 0.71 2
(AC177435) Strongylocentrotus purpuratus clone R3-5B13, WORK... 32 0.71 2
(AC201046) Strongylocentrotus purpuratus clone R3-12M21, WOR... 32 0.74 2
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 46 0.87 4
(CV710938) UCRPT01_0015C02_f Poncirus trifoliata CTV-challen... 32 0.90 2
(BH515287) BOGOI55TF BOGO Brassica oleracea genomic clone BO... 36 0.90 2
(BH578512) BOGEE90TF BOGE Brassica oleracea genomic clone BO... 36 0.91 2
(CT573502) Medicago truncatula chromosome 5 clone mte1-69f21... 40 0.92 5
(AC192023) Chlorocebus aethiops clone CH252-251O15, WORKING ... 46 1.1 3
(AL378193) Medicago truncatula EST MtBB36F05F1 : T3 end of c... 36 1.2 2
(EG327498) MGC12nov.2.1.L1.1.B07.R.1 NIH_MGC_331 Homo sapien... 36 1.2 2
(Z99128) Human DNA sequence from clone RP3-422H11 on chromos... 46 1.3 1
(AC153107) Loxodonta africana clone VMRC15-238F13, WORKING D... 46 1.3 1
(AC229926) Oryza minuta clone OM__Ba0141N09, *** SEQUENCING ... 46 1.3 1
(AC214648) Zea mays chromosome 8 clone CH201-363P2; ZMMBBc03... 46 1.3 1
(AC196179) Zea mays chromosome 8 clone CH201-195D15; ZMMBBc0... 46 1.3 1
(AC179768) Strongylocentrotus purpuratus clone R3-1016I13, W... 46 1.3 1
(AC178897) Strongylocentrotus purpuratus clone R3-3114J14, W... 46 1.3 1
(AC178462) Strongylocentrotus purpuratus clone R3-3039P05, W... 46 1.3 1
(AC178379) Strongylocentrotus purpuratus clone R3-3107F23, W... 46 1.3 1
(AC175209) Cavia porcellus clone CH234-491B10, WORKING DRAFT... 46 1.3 1
(ER999797) ZMMBHp0003H23.f ZMMBHp Zea mays genomic clone ZMM... 46 1.3 1
(ER999073) ZMMBHp0002H23.f ZMMBHp Zea mays genomic clone ZMM... 46 1.3 1
(DU703054) Bst035581 lambda03 Boechera stricta genomic clone... 46 1.3 1
(DU696394) Bst028924 lambda03 Boechera stricta genomic clone... 46 1.3 1
(DU685648) Bst018184 lambda03 Boechera stricta genomic clone... 46 1.3 1
(CG449202) OGTCF08TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 1.3 1
(CG446810) OGTBR70TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 1.3 1
(CG446307) OGVHI52TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 1.3 1
(CG446302) OGVHI52TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 1.3 1
(BZ375639) ie59h04.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ... 46 1.3 1
(BZ363221) id82e08.g1 WGS-ZmaysF (JM107 adapted methyl filte... 46 1.3 1
(EL403141) CFFS14235.b1_E07.ab1 CFF(LMS) safflower Carthamus... 46 1.3 1
(CU716402) Phaeodactylum tricornutum mRNA 5-prime sequence f... 46 1.3 1
(CU709473) Phaeodactylum tricornutum mRNA 5-prime sequence f... 46 1.3 1
(CT879825) Phaeodactylum tricornutum 5-PRIME EST from clone ... 46 1.3 1
(CO837319) LM_GH5_005260 Locusta migratoria gregarious phase... 46 1.3 1
(FE237978) CAPG4632.fwd CAPG Naegleria gruberi amoeba stage ... 46 1.3 1
>(BJ426455) Dictyostelium discoideum cDNA clone:ddv59e03, 5' end,
single read.
Length = 539
Score = 472 bits (238), Expect(2) = e-161
Identities = 238/238 (100%)
Strand = Plus / Plus
Query: 271 tcttcattcaaacaaccttcatcagatacttctagaaataatttattggaatcaattcgt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcttcattcaaacaaccttcatcagatacttctagaaataatttattggaatcaattcgt 332
Query: 331 caaccaaaagaattgaaaaaagttactgaagctgatatgactcacaataatcaacaagaa 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caaccaaaagaattgaaaaaagttactgaagctgatatgactcacaataatcaacaagaa 392
Query: 391 gatgatggctcaatggtaaatatattagttagagctctcattgatagaagacaaaatatg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gatgatggctcaatggtaaatatattagttagagctctcattgatagaagacaaaatatg 452
Query: 451 aatgaagacgattacgatgatgaagatgaggaagttgcttgggatgattaaacctctt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatgaagacgattacgatgatgaagatgaggaagttgcttgggatgattaaacctctt 510
Score = 135 bits (68), Expect(2) = e-161
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 162 tcaatcacattcttcttcttcttcagctgttcctgctgctactactacctctacttctac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tcaatcacattcttcttcttcttcagctgttcctgctgctactactacctctacttctac 223
Query: 222 tccatcat 229
||||||||
Sbjct: 224 tccatcat 231
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 405,423,531
Number of extensions: 31018742
Number of successful extensions: 5133115
Number of sequences better than 10.0: 279
Length of query: 537
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 514
Effective length of database: 93,106,754,628
Effective search space: 47856871878792
Effective search space used: 47856871878792
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 7.13 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
1 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |