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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14852-1
Contig ID Contig-U14852-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14852-1 (Contig-U14852-1Q) /CSM_Contig/Contig-U14852-1Q.Seq.d
AATNGAAAAAAAAAAAAAAAATTTTCCAAAACACATATATAACTATTAAA
AAAAAATGTTATCAAAATTAGTTAAAGATCATCAAACACATCAAAATAAA
TTAAAAGAAGAGAATGAGGTATTAAAAAAAGAAGCAATAGCATCAATGGG
TGTTGTAACTAATGGATTAATAGATTCAGTTAATACAGGTGTTGCATGTA
TATTTGCAAATCAAAAGAAATTAGAAACAGAGGCAAGATTATTACAAGCC
AATACAGCAAAATTCTCAAAACAAACAAATCAATGGATTCATTTAATTGA
AAACTTTAATAATTCATTAAAAGAAATTGGTGATGTTGAAAATTGGTCAA
AAAAGATCGAAAGTGATATGCATAATATCTCTGATATCATAGAATTTTTA
TATATAAACTCAAATCCAATTCAACAACAACCACAACAACAACCACAACA
ACAACAACAATAAAATGACAATTTGTAATATAAAAAAAAA
Gap no gap
Contig length 490
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2860254
End point 2860734
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U14852
List of clone(s) 

est1=VHM257Z,1,378
est2=VSJ174F,61,491
est3=VSJ174Z,61,480
Translated Amino Acid sequence 
xekkkknfpkhiyny*KKMLSKLVKDHQTHQNKLKEENEVLKKEAIASMGVVTNGLIDSV
NTGVACIFANQKKLETEARLLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIE
SDMHNISDIIEFLYINSNPIQQQPQQQPQQQQQ*ndnl*ykkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nxkkkkkfskthi*llkknvikis*rssntsk*ikrre*gikkrsnsingccn*winrfs
*yrccmyickskeirnrgkiitsqyskilktnksmdsfn*kl**fikrnw*c*klvkkdr
k*ya*yl*yhrifiyklksnsttttttttttttik*qfvi*kk


Frame B:
xekkkknfpkhiyny*KKMLSKLVKDHQTHQNKLKEENEVLKKEAIASMGVVTNGLIDSV
NTGVACIFANQKKLETEARLLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIE
SDMHNISDIIEFLYINSNPIQQQPQQQPQQQQQ*ndnl*ykkk


Frame C:
xkkkkkifqntyitikkkcyqn*lkiikhikin*kkrmry*kkkq*hqwvl*lmd**iql
iqvlhvylqikrn*kqrqdyykpiqqnsqnkqingfi*lktliih*kklvmlkigqkrsk
viciislis*nfyi*tqiqfnnnhnnnhnnnnnkmticnikk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14852-1 (Contig-U14852-1Q)
/CSM_Contig/Contig-U14852-1Q.Seq.d
         (490 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14852-1 (Contig-U14852-1Q) /CSM_Contig/Conti...   698  0.0
Contig-U14894-1 (Contig-U14894-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U13582-1 (Contig-U13582-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U00977-1 (Contig-U00977-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11865-1 (Contig-U11865-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U11037-1 (Contig-U11037-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U05556-1 (Contig-U05556-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U13001-1 (Contig-U13001-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U12867-1 (Contig-U12867-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U01891-1 (Contig-U01891-1Q) /CSM_Contig/Conti...    32  0.53

>Contig-U14852-1 (Contig-U14852-1Q) /CSM_Contig/Contig-U14852-1Q.Seq.d
          Length = 490

 Score =  698 bits (352), Expect = 0.0
 Identities = 384/400 (96%)
 Strand = Plus / Plus

                                                                       
Query: 22  ttttccaaaacacatatataactattnnnnnnnnntgttatcaaaattagttaaagatca 81
           ||||||||||||||||||||||||||         |||||||||||||||||||||||||
Sbjct: 22  ttttccaaaacacatatataactattaaaaaaaaatgttatcaaaattagttaaagatca 81

                                                                       
Query: 82  tcaaacacatcaaaataaattaaaagaagagaatgaggtattnnnnnnngaagcaatagc 141
           ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 82  tcaaacacatcaaaataaattaaaagaagagaatgaggtattaaaaaaagaagcaatagc 141

                                                                       
Query: 142 atcaatgggtgttgtaactaatggattaatagattcagttaatacaggtgttgcatgtat 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 atcaatgggtgttgtaactaatggattaatagattcagttaatacaggtgttgcatgtat 201

                                                                       
Query: 202 atttgcaaatcaaaagaaattagaaacagaggcaagattattacaagccaatacagcaaa 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atttgcaaatcaaaagaaattagaaacagaggcaagattattacaagccaatacagcaaa 261

                                                                       
Query: 262 attctcaaaacaaacaaatcaatggattcatttaattgaaaactttaataattcattaaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attctcaaaacaaacaaatcaatggattcatttaattgaaaactttaataattcattaaa 321

                                                                       
Query: 322 agaaattggtgatgttgaaaattggtcaaaaaagatcgaaagtgatatgcataatatctc 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaaattggtgatgttgaaaattggtcaaaaaagatcgaaagtgatatgcataatatctc 381

                                                   
Query: 382 tgatatcatagaatttttatatataaactcaaatccaatt 421
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgatatcatagaatttttatatataaactcaaatccaatt 421


 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 461 taaaatgacaatttgtaatat 481
           |||||||||||||||||||||
Sbjct: 461 taaaatgacaatttgtaatat 481


>Contig-U14894-1 (Contig-U14894-1Q) /CSM_Contig/Contig-U14894-1Q.Seq.d
          Length = 661

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 288 ttcatttaattgaaaactttaataattcattaaaa 322
           |||||||||||||| | |||||||| | |||||||
Sbjct: 560 ttcatttaattgaagattttaataacttattaaaa 594


>Contig-U13582-1 (Contig-U13582-1Q) /CSM_Contig/Contig-U13582-1Q.Seq.d
          Length = 638

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 258 caaaattctcaaaacaaacaaat 280
           ||||||| |||||||||||||||
Sbjct: 359 caaaattatcaaaacaaacaaat 381


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8670
Number of Sequences: 6905
Number of extensions: 8670
Number of successful extensions: 1222
Number of sequences better than 10.0: 415
length of query: 490
length of database: 5,674,871
effective HSP length: 16
effective length of query: 474
effective length of database: 5,564,391
effective search space: 2637521334
effective search space used: 2637521334
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 1. 3
Homology vs DNA 
Query= Contig-U14852-1 (Contig-U14852-1Q) /CSM_Contig/Contig-U14852-1Q.Seq.d
         (490 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269519) Dictyostelium discoideum vegetative cDNA clone:VS...   577   e-171  3
(AU269520) Dictyostelium discoideum vegetative cDNA clone:VS...   577   e-164  2
(BJ444169) Dictyostelium discoideum cDNA clone:ddv55a16, 3' ...   492   e-146  3
(BI513126) BB160011A20E03.5 Bee Brain Normalized Library, BB...    50   6e-07  2
(BI507664) BB170026B20B03.5 Bee Brain Normalized/Subtracted ...    50   7e-07  2
(EY481248) CBBP11273.rev CBBP Hirudo medicinalis hermaphrodi...    50   0.007  2
(BK000554) TPA_inf: Chlamydomonas reinhardtii chloroplast, c...    46   0.047  7
(EI388681) POTBN29TF Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.29   1
(ES376174) Oro_Embryo_1_B08 Guppy pDNR_LIB Oropuche Embryo P...    48   0.29   1
(EY483026) CBBP12730.fwd CBBP Hirudo medicinalis hermaphrodi...    48   0.29   1
(EY483025) CBBP12730.rev CBBP Hirudo medicinalis hermaphrodi...    48   0.29   1
(AM879043) Mytilus edulis EST, 5' end sequence, clone mytilu...    38   0.35   2
(AC099712) Mus musculus chromosome 1, clone RP23-400C10, com...    40   0.74   5
(EU210933) Armigeres subalbatus ASAP ID ACN-0184391 transcri...    36   0.85   2
(AC218054) Peromyscus maniculatus rufinus clone CH233-1M7, W...    40   0.86   3
(AC175885) Strongylocentrotus purpuratus clone R3-15C16, WOR...    44   0.93   3
(X53977) Chlamydomonas reinhardtii chloroplast rps7, rps14 a...    46   1.2    1
(CQ600296) Sequence 28054 from Patent WO0171042.                   46   1.2    1
(CQ592721) Sequence 20479 from Patent WO0171042.                   46   1.2    1
(EF127411) Toxomerus virgulatus 28S ribosomal RNA gene, part...    46   1.2    1
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    46   1.2    1
(AC099022) Drosophila melanogaster, chromosome 2L, region 23...    46   1.2    1
(AC005554) Drosophila melanogaster, chromosome 2L, region 23...    46   1.2    1
(AC131428) Rattus norvegicus clone CH230-110A17, *** SEQUENC...    46   1.2    1
(AC095223) Rattus norvegicus clone CH230-9M17, *** SEQUENCIN...    46   1.2    1
(AC094904) Rattus norvegicus clone CH230-6J17, *** SEQUENCIN...    46   1.2    1
(AC020009) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   1.2    1
(CZ901144) gz31g08.x1.b.screen Soybean methylation filtered ...    46   1.2    1
(CT563188) A BAC library has been constructed from cultivar ...    46   1.2    1
(CE004871) tigr-gss-dog-17000320837345 Dog Library Canis lup...    46   1.2    1
(BE452606) 894064A06.x1 C. reinhardtii CC-1690, normalized, ...    46   1.2    1
(CP000727) Clostridium botulinum A str. Hall, complete genome.     46   1.2    1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    46   1.2    1
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    46   1.2    1
(AC178643) Strongylocentrotus purpuratus clone R3-11E3, WORK...    44   1.4    3
(AC040907) Homo sapiens chromosome 7 clone RP11-186A7 map 7,...    40   1.4    5
(FC598410) CAXS11434.rev CAXS Lottia gigantea from head, foo...    36   1.6    2
(AC205237) Spermophilus tridecemlineatus clone VMRC20-346N10...    38   1.9    4
(AC104257) Homo sapiens chromosome 8, clone CTD-2501M5, comp...    34   2.3    2
(AC004140) Homo sapiens PAC clone RP5-841B21 from 7, complet...    40   2.3    3
(AC104040) Homo sapiens chromosome 8, clone CTD-2023L15, com...    34   2.3    2
(BQ736311) AGENCOURT_8096544 NICHD_XGC_Emb4 Xenopus laevis c...    34   3.0    2
(DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,...    32   3.9    7
(AC122505) Mus musculus BAC clone RP24-419P3 from chromosome...    34   3.9    5
(AC123134) Rattus norvegicus clone CH230-163I11, *** SEQUENC...    42   4.3    3
(BX601648) Zebrafish DNA sequence from clone DKEY-14F19 in l...    44   4.6    1
(AL772310) Mouse DNA sequence from clone RP23-34B24 on chrom...    44   4.6    1
(AC157085) Mus musculus BAC clone RP24-185I21 from chromosom...    44   4.6    1
(AC155931) Mus musculus BAC clone RP23-289D4 from 9, complet...    44   4.6    1
(AC154611) Mus musculus BAC clone RP23-335I9 from 13, comple...    44   4.6    1
(AC124350) Mus musculus BAC clone RP24-466K21 from chromosom...    44   4.6    1
(AC116896) Mus musculus chromosome 8, clone RP24-531D19, com...    44   4.6    1
(AL513488) Human DNA sequence from clone RP11-132G10 on chro...    44   4.6    1
(AC107919) Homo sapiens chromosome 17 clone RP11-270I9 map 1...    44   4.6    1
(AC103168) Rattus norvegicus clone CH230-54N23, *** SEQUENCI...    44   4.6    1
(AC177016) Strongylocentrotus purpuratus clone R3-37H23, WOR...    44   4.6    1
(AC176092) Strongylocentrotus purpuratus clone R3-24C18, WOR...    44   4.6    1
(AC172387) Strongylocentrotus purpuratus clone R3-1004H13, W...    44   4.6    1
(AC165661) Bos taurus clone CH240-168C6, WORKING DRAFT SEQUE...    44   4.6    1
(AQ757806) HS_5475_B1_F02_T7A RPCI-11 Human Male BAC Library...    44   4.6    1
(EK061580) 1092960088838 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.6    1
(EI868171) CAH1-38B3TV CAA1Ba Cicer arietinum genomic clone ...    44   4.6    1
(EH786958) CNSS26984.b1_P01.ab1 CNS(LMS) yellow starthistle ...    44   4.6    1
(EH640461) EST11569 LK04 Laupala kohalensis cDNA clone 10610...    44   4.6    1
(EH637959) EST9067 LK04 Laupala kohalensis cDNA clone 106102...    44   4.6    1
(EB250277) PEG003-C-032853-501 Normalized Pedal-Pleural Gang...    44   4.6    1
(EB249473) PEG003-C-035127-501 Normalized Pedal-Pleural Gang...    44   4.6    1
(EB244527) PEG003-C-226813-501 Normalized Pedal-Pleural Gang...    44   4.6    1
(EB238293) PEG003-C-223968-501 Normalized Pedal-Pleural Gang...    44   4.6    1
(EB231006) PEG003-C-205783-501 Normalized Pedal-Pleural Gang...    44   4.6    1
(BM880768) rb18a11.y1 Meloidogyne incognita egg pAMP1 Bird M...    44   4.6    1
(BG736075) rk49d12.y1 Meloidogyne javanica egg pAMP1 v6 Chia...    44   4.6    1
(BG602204) EST501294 Plasmodium yoelii sporozoite cDNA Plasm...    44   4.6    1
(FF071594) G1045P325FK4.T0 Aplysia californica Pooled Normal...    44   4.6    1
(CR628336) Legionella pneumophila str. Paris complete genome.      44   4.6    1
(CP000828) Acaryochloris marina MBIC11017, complete genome.        44   4.6    1
(CP000312) Clostridium perfringens SM101, complete genome.         44   4.6    1
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    44   4.6    1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    44   4.6    1
(AE017354) Legionella pneumophila subsp. pneumophila str. Ph...    44   4.6    1
(DB313676) Homo sapiens cDNA clone CTONG2009156, 3' end, mRN...    34   4.6    2
(CU151877) M.truncatula DNA sequence from clone MTH2-170E16 ...    42   5.1    5
(AC110837) Rattus norvegicus clone CH230-66P5, *** SEQUENCIN...    42   5.1    3
(EK067295) 1092960140595 Global-Ocean-Sampling_GS-31-01-01-1...    36   6.3    2
(AC124103) Mus musculus chromosome 15, clone RP24-271M13, co...    34   6.5    6
(BV585415) G591P629210FC4.T0 Clint Pan troglodytes verus STS...    36   6.8    2
(AC219552) Bos taurus clone CH240-329J12, WORKING DRAFT SEQU...    40   7.2    5
(AC015809) Homo sapiens chromosome 15 clone RP11-353P24 map ...    38   7.2    5
(EK076894) 1092961052769 Global-Ocean-Sampling_GS-31-01-01-1...    36   7.5    2
(EK541259) 1095516058452 Global-Ocean-Sampling_GS-32-01-01-1...    36   7.6    2
(AL157776) Human DNA sequence from clone RP11-68J15 on chrom...    40   7.7    2

>(AU269519) Dictyostelium discoideum vegetative cDNA clone:VSJ174,
           5' end single read.
          Length = 431

 Score =  577 bits (291), Expect(3) = e-171
 Identities = 291/291 (100%)
 Strand = Plus / Plus


Query: 131 gaagcaatagcatcaatgggtgttgtaactaatggattaatagattcagttaatacaggt 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  gaagcaatagcatcaatgggtgttgtaactaatggattaatagattcagttaatacaggt 130


Query: 191 gttgcatgtatatttgcaaatcaaaagaaattagaaacagaggcaagattattacaagcc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gttgcatgtatatttgcaaatcaaaagaaattagaaacagaggcaagattattacaagcc 190


Query: 251 aatacagcaaaattctcaaaacaaacaaatcaatggattcatttaattgaaaactttaat 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aatacagcaaaattctcaaaacaaacaaatcaatggattcatttaattgaaaactttaat 250


Query: 311 aattcattaaaagaaattggtgatgttgaaaattggtcaaaaaagatcgaaagtgatatg 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aattcattaaaagaaattggtgatgttgaaaattggtcaaaaaagatcgaaagtgatatg 310


Query: 371 cataatatctctgatatcatagaatttttatatataaactcaaatccaatt 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cataatatctctgatatcatagaatttttatatataaactcaaatccaatt 361

 Score = 42.1 bits (21), Expect(3) = e-171
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 461 taaaatgacaatttgtaatat 481
           |||||||||||||||||||||
Sbjct: 401 taaaatgacaatttgtaatat 421

 Score = 34.2 bits (17), Expect(3) = e-171
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 107 gaagagaatgaggtatt 123
           |||||||||||||||||
Sbjct: 47  gaagagaatgaggtatt 63

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 502,705,046
Number of extensions: 36100324
Number of successful extensions: 3097768
Number of sequences better than 10.0: 91
Length of query: 490
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 467
Effective length of database: 93,106,754,628
Effective search space: 43480854411276
Effective search space used: 43480854411276
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.13
Homology vs Protein 
Query= Contig-U14852-1 (Contig-U14852-1Q) /CSM_Contig/Contig-U14852-1Q.Seq.d
         (490 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54VX7) RecName: Full=Probable biogenesis of lysosome-related o...   214   7e-55
BC118866_1(BC118866|pid:none) Xenopus tropicalis biogenesis of l...   115   6e-25
AK341545_1(AK341545|pid:none) Acyrthosiphon pisum ACYPI003941 mR...   114   9e-25
BC082449_1(BC082449|pid:none) Xenopus laevis MGC84073 protein, m...   114   1e-24
(P78537) RecName: Full=Biogenesis of lysosome-related organelles...   113   3e-24
DQ311175_1(DQ311175|pid:none) Bombyx mori general control of ami...   111   1e-23
BT083210_1(BT083210|pid:none) Anoplopoma fimbria clone afim-evh-...   110   1e-23
BT043552_1(BT043552|pid:none) Salmo salar clone HM4_2132 lysosom...   110   2e-23
JC6514(JC6514) GCN5L1 protein - mouse  &Y13778_1(Y13778|pid:none)     108   5e-23
BT081898_1(BT081898|pid:none) Rana catesbeiana clone rcat-evr-50...   103   2e-21
BT022317_1(BT022317|pid:none) Drosophila melanogaster IP04570 fu...    92   9e-18
(Q22616) RecName: Full=Probable biogenesis of lysosome-related o...    91   1e-17
EF083068_1(EF083068|pid:none) Picea sitchensis clone WS02717_H20...    87   2e-16
AP008217_58(AP008217|pid:none) Oryza sativa (japonica cultivar-g...    70   3e-11
FN318510_1(FN318510|pid:none) Schistosoma japonicum isolate Anhu...    65   1e-09
FN357882_3(FN357882|pid:none) Schistosoma mansoni genome sequenc...    64   1e-09
CR954205_442(CR954205|pid:none) Ostreococcus tauri strain OTTH05...    64   2e-09
AY813958_1(AY813958|pid:none) Schistosoma japonicum SJCHGC03830 ...    64   2e-09
AM920427_1164(AM920427|pid:none) Penicillium chrysogenum Wiscons...    54   3e-06
EU953557_1(EU953557|pid:none) Zea mays clone 1434305 unknown mRNA.     52   1e-05
AM269999_16(AM269999|pid:none) Aspergillus niger contig An02c004...    48   1e-04
CU638743_432(CU638743|pid:none) Podospora anserina genomic DNA c...    35   0.73
BX284747_2(BX284747|pid:none) Neurospora crassa DNA linkage grou...    35   0.95
U40238_1(U40238|pid:none) Uncultured crenarchaeote 4B7 40 kb gen...    34   1.6
FJ830675_1(FJ830675|pid:none) Ctenopharyngodon idella keratin-li...    34   1.6
AJ460000_1(AJ460000|pid:none) Danio rerio partial mRNA for kerat...    34   2.1
(Q6NWF6) RecName: Full=Keratin, type II cytoskeletal 8; AltName:...    34   2.1
EU714157_1(EU714157|pid:none) Epinephelus coioides keratin 8 mRN...    33   2.8
CP000471_2085(CP000471|pid:none) Magnetococcus sp. MC-1, complet...    33   2.8
X92522_1(X92522|pid:none) Oncorhynchus mykiss mRNA for simple ty...    33   3.6
BT045439_1(BT045439|pid:none) Salmo salar clone ssal-rgf-521-221...    33   3.6
CP000507_1242(CP000507|pid:none) Shewanella amazonensis SB2B, co...    33   3.6
EU016631_29(EU016631|pid:none) Uncultured Group I marine crenarc...    33   4.7
DQ396875_70(DQ396875|pid:none) Scenedesmus obliquus strain UTEX ...    32   6.0
DQ086174_1(DQ086174|pid:none) Ictalurus punctatus keratin 8 mRNA...    32   6.1
AM406671_517(AM406671|pid:none) Lactococcus lactis subsp. cremor...    32   6.1
AB370205_1(AB370205|pid:none) Staphylococcus phage phiMR25 DNA, ...    32   7.8
AY954966_35(AY954966|pid:none) Bacteriophage 88, complete genome.      32   7.8
AY954950_31(AY954950|pid:none) Bacteriophage 187, complete genome.     32   7.8
AF424781_1(AF424781|pid:none) Staphylococcus aureus phage phi 11...    32   7.8
EU375343_1(EU375343|pid:none) Influenza A virus (A/equine/Cornel...    32   8.0
CP000350_901(CP000350|pid:none) Leptospira borgpetersenii serova...    32   8.0
CP001399_63(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, c...    32   8.0
CP000687_746(CP000687|pid:none) Actinobacillus pleuropneumoniae ...    32   8.0
(P26101) RecName: Full=Hemagglutinin; Contains:   RecName: Full=...    32   8.0
(P26099) RecName: Full=Hemagglutinin; Contains:   RecName: Full=...    32   8.0
(Q148H7) RecName: Full=Keratin, type II cytoskeletal 79; AltName...    32   8.0
(P26103) RecName: Full=Hemagglutinin; Contains:   RecName: Full=...    32   8.0
CY036887_1(CY036887|pid:none) Influenza A virus (A/equine/Urugua...    32   8.0
(P26094) RecName: Full=Hemagglutinin; Contains:   RecName: Full=...    32   8.0
(P26095) RecName: Full=Hemagglutinin; Contains:   RecName: Full=...    32   8.0
(P26098) RecName: Full=Hemagglutinin; Contains:   RecName: Full=...    32   8.0
(P26097) RecName: Full=Hemagglutinin; Contains:   RecName: Full=...    32   8.0
CP001400_63(CP001400|pid:none) Sulfolobus islandicus M.14.25, co...    32   8.0
AB298277_1(AB298277|pid:none) Influenza A virus (A/R(equine/Prag...    32   8.0
CY036871_1(CY036871|pid:none) Influenza A virus (A/equine/Kentuc...    32   8.0

>(Q54VX7) RecName: Full=Probable biogenesis of lysosome-related
           organelles complex 1 subunit 1;          Short=BLOC-1
           subunit 1;
          Length = 135

 Score =  214 bits (546), Expect = 7e-55
 Identities = 109/122 (89%), Positives = 109/122 (89%)
 Frame = +2

Query: 56  MLSKLVKDHQTHQXXXXXXXXXXXXXAIASMGVVTNGLIDSVNTGVACIFANQKKLETEA 235
           MLSKLVKDHQTHQ             AIASMGVVTNGLIDSVNTGVACIFANQKKLETEA
Sbjct: 1   MLSKLVKDHQTHQNKLKEENEVLKKEAIASMGVVTNGLIDSVNTGVACIFANQKKLETEA 60

Query: 236 RLLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLYINSN 415
           RLLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLYINSN
Sbjct: 61  RLLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLYINSN 120

Query: 416 PI 421
           PI
Sbjct: 121 PI 122

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 605,879,093
Number of extensions: 9728961
Number of successful extensions: 31469
Number of sequences better than 10.0: 56
Number of HSP's gapped: 31437
Number of HSP's successfully gapped: 56
Length of query: 163
Length of database: 1,051,180,864
Length adjustment: 118
Effective length of query: 45
Effective length of database: 669,266,902
Effective search space: 30117010590
Effective search space used: 30117010590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.51  gvh: 0.45  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U14852-1 is nuc
VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0