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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14845-1
Contig ID Contig-U14845-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14845-1 (Contig-U14845-1Q) /CSM_Contig/Contig-U14845-1Q.Seq.d
ATTTTTTTTTATGGGAAAAAATAAAATGAATAAAAAAAATAATAATTTTA
AGTATTTATTTTTAATAATAATAAATTTATTTTTAAAAACTGCAAGTGCA
GCAACAAAAAATGGTTTANATGTGAACCAATATAACTGTATGGNGGATCT
TTTTACATCAAATCAAATTTTGAACCAGGTTAATTTGGCAAACCTTAATT
ATAATTTTTGTGATTTTGTTAAAGGATTTCAATGTAATACTGCTACTTAT
TTTATTGAAAAAGTAACATTAAATTATCCTATAGGACAAGTTCCCATACC
ATTAATTACAACTAGTTTTGCATGTATACCAACAATGACTCAATTAGTAA
TAAATAATTTCGATGTTGGATCTTTCATATCAACAAATAATGTTAAATTA
CAAAGATTGGAATTAAATAATTGTACAAAATTATATCCATTGCCAGTTTT
AAGTTCAATTATTGAANATGTTTACATTTTTAATAATGATAATTCGCACA
ATGAGAGTAGAGTGTCAATTGATTTTTCAAGTATTATAAATTTAAGATCA
TTTACCTTGGTTGATTATACAAGAAATGTGTCATATACAAGATTAATAGG
TATACCAACAACTTTTAAATTNNNNNNNNN
Gap no gap
Contig length 630
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 388618
End point 389239
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U14845
List of clone(s) 

est1=VHL652F,1,621
Translated Amino Acid sequence 
FFFMGKNKMNKKNNNFKYLFLIIINLFLKTASAATKNGLXVNQYNCMXDLFTSNQILNQV
NLANLNYNFCDFVKGFQCNTATYFIEKVTLNYPIGQVPIPLITTSFACIPTMTQLVINNF
DVGSFISTNNVKLQRLELNNCTKLYPLPVLSSIIEXVYIFNNDNSHNESRVSIDFSSIIN
LRSFTLVDYTRNVSYTRLIGIPTTFKXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
iffygkk*ne*kk**f*vfifnnnkfifknckcsnkkwfxcepi*lyggsfyiksnfepg
*fgkp*l*fl*fc*rism*ycylfy*ksniklsyrtsshtinyn*fcmytnndsisnk*f
rcwifhink*c*itkigik*lykiisiasfkfny*xclhf****faq*e*svn*ffkyyk
fkiiylg*lykkcviykinrytnnf*ixxx


Frame B:
FFFMGKNKMNKKNNNFKYLFLIIINLFLKTASAATKNGLXVNQYNCMXDLFTSNQILNQV
NLANLNYNFCDFVKGFQCNTATYFIEKVTLNYPIGQVPIPLITTSFACIPTMTQLVINNF
DVGSFISTNNVKLQRLELNNCTKLYPLPVLSSIIEXVYIFNNDNSHNESRVSIDFSSIIN
LRSFTLVDYTRNVSYTRLIGIPTTFKXXX


Frame C:
fflwekik*ikkiiilsiyf****iyf*klqvqqqkmvxm*tnitvwxiflhqikf*trl
iwqtliiifvillkdfnvilllillkk*h*iil*dkfpyh*lqlvlhvyqq*ln***iis
mldlsyqqimlnykdwn*iivqnyihcqf*vqllxmftflimiirtmrvecqlifqvl*i
*dhlpwliiqemchiqd**vyqqllnxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14845-1 (Contig-U14845-1Q)
/CSM_Contig/Contig-U14845-1Q.Seq.d
         (630 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14845-1 (Contig-U14845-1Q) /CSM_Contig/Conti...  1043  0.0
Contig-U11864-1 (Contig-U11864-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U10835-1 (Contig-U10835-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U09539-1 (Contig-U09539-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U02378-1 (Contig-U02378-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U14803-1 (Contig-U14803-1Q) /CSM_Contig/Conti...    32  0.69
Contig-U14360-1 (Contig-U14360-1Q) /CSM_Contig/Conti...    32  0.69
Contig-U14187-1 (Contig-U14187-1Q) /CSM_Contig/Conti...    32  0.69
Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Conti...    32  0.69

>Contig-U14845-1 (Contig-U14845-1Q) /CSM_Contig/Contig-U14845-1Q.Seq.d
          Length = 630

 Score = 1043 bits (526), Expect = 0.0
 Identities = 535/535 (100%)
 Strand = Plus / Plus

                                                                       
Query: 87  aaactgcaagtgcagcaacaaaaaatggtttanatgtgaaccaatataactgtatggngg 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  aaactgcaagtgcagcaacaaaaaatggtttanatgtgaaccaatataactgtatggngg 146

                                                                       
Query: 147 atctttttacatcaaatcaaattttgaaccaggttaatttggcaaaccttaattataatt 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 atctttttacatcaaatcaaattttgaaccaggttaatttggcaaaccttaattataatt 206

                                                                       
Query: 207 tttgtgattttgttaaaggatttcaatgtaatactgctacttattttattgaaaaagtaa 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tttgtgattttgttaaaggatttcaatgtaatactgctacttattttattgaaaaagtaa 266

                                                                       
Query: 267 cattaaattatcctataggacaagttcccataccattaattacaactagttttgcatgta 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cattaaattatcctataggacaagttcccataccattaattacaactagttttgcatgta 326

                                                                       
Query: 327 taccaacaatgactcaattagtaataaataatttcgatgttggatctttcatatcaacaa 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taccaacaatgactcaattagtaataaataatttcgatgttggatctttcatatcaacaa 386

                                                                       
Query: 387 ataatgttaaattacaaagattggaattaaataattgtacaaaattatatccattgccag 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ataatgttaaattacaaagattggaattaaataattgtacaaaattatatccattgccag 446

                                                                       
Query: 447 ttttaagttcaattattgaanatgtttacatttttaataatgataattcgcacaatgaga 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttttaagttcaattattgaanatgtttacatttttaataatgataattcgcacaatgaga 506

                                                                       
Query: 507 gtagagtgtcaattgatttttcaagtattataaatttaagatcatttaccttggttgatt 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtagagtgtcaattgatttttcaagtattataaatttaagatcatttaccttggttgatt 566

                                                                  
Query: 567 atacaagaaatgtgtcatatacaagattaataggtataccaacaacttttaaatt 621
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atacaagaaatgtgtcatatacaagattaataggtataccaacaacttttaaatt 621


>Contig-U11864-1 (Contig-U11864-1Q) /CSM_Contig/Contig-U11864-1Q.Seq.d
          Length = 1613

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 207  tttgtgattttgttaaa 223
            |||||||||||||||||
Sbjct: 1453 tttgtgattttgttaaa 1437


>Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Contig-U11332-1Q.Seq.d
          Length = 3658

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 410  gaattaaataattgtac 426
            |||||||||||||||||
Sbjct: 2151 gaattaaataattgtac 2135


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,212
Number of Sequences: 6905
Number of extensions: 10212
Number of successful extensions: 1105
Number of sequences better than 10.0: 96
length of query: 630
length of database: 5,674,871
effective HSP length: 16
effective length of query: 614
effective length of database: 5,564,391
effective search space: 3416536074
effective search space used: 3416536074
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1. 3
Homology vs DNA 
Query= Contig-U14845-1 (Contig-U14845-1Q) /CSM_Contig/Contig-U14845-1Q.Seq.d
         (630 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ425082) Dictyostelium discoideum cDNA clone:ddv54g14, 5' ...  1037   0.0    1
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    38   0.042  9
(AM485008) Vitis vinifera contig VV78X059648.3, whole genome...    42   0.075  2
(AC162509) Bos taurus clone CH240-111B21, WORKING DRAFT SEQU...    50   0.097  1
(EI813900) POTI463TF Solanum tuberosum RHPOTKEY BAC ends Sol...    42   0.21   2
(BD061520) Genome DNA of symbiotic bacteria of aphid.              32   0.22   11
(AR409405) Sequence 1 from patent US 6632935.                      32   0.22   11
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    32   0.22   11
(AC155602) Zea mays strain B73 clone ZMMBBc0232P14, *** SEQU...    48   0.38   1
(AC155405) Zea mays strain B73 clone ZMMBBb0180B23, *** SEQU...    48   0.38   1
(AC225340) Zea mays chromosome 9 clone CH201-370E10; ZMMBBc0...    48   0.38   1
(AC211681) Zea mays chromosome 9 clone CH201-460N18; ZMMBBc0...    48   0.38   1
(AC180036) Strongylocentrotus purpuratus clone R3-23P20, WOR...    48   0.38   1
(AJ235270) Rickettsia prowazekii strain Madrid E, complete g...    38   0.54   6
(AM427887) Vitis vinifera contig VV78X091037.5, whole genome...    36   0.91   2
(DY886597) CeleSEQ2316 Cunninghamella elegans pBluescript (E...    38   0.92   2
(DY891030) CeleSEQ7548 Cunninghamella elegans pBluescript (E...    38   0.94   2
(AM480621) Vitis vinifera contig VV78X278495.3, whole genome...    36   0.97   2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   1.0    11
(AC185066) Bos taurus clone CH240-87N6, WORKING DRAFT SEQUEN...    40   1.4    3
(AC120253) Rattus norvegicus clone CH230-392K9, WORKING DRAF...    46   1.5    1
(CU462929) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(AC221581) Bos taurus clone CH240-391J8, WORKING DRAFT SEQUE...    46   1.5    1
(AC184947) Bos taurus clone CH240-306P10, WORKING DRAFT SEQU...    46   1.5    1
(DE311709) Bombyx mori genomic DNA, BAC clone:BES_090_L05.         46   1.5    1
(DE311708) Bombyx mori genomic DNA, BAC clone:BES_090_L04.         46   1.5    1
(DE311707) Bombyx mori genomic DNA, BAC clone:BES_090_L03.         46   1.5    1
(BY927999) Bombyx mori cDNA, clone:E_EL_fcP8_12F07_R_0, 3' e...    46   1.5    1
(BW804064) Branchiostoma floridae cDNA, larva clone:bflv029f...    46   1.5    1
(CP000236) Ehrlichia chaffeensis str. Arkansas, complete gen...    46   1.5    1
(AX392735) Sequence 25 from Patent WO0212526.                      34   1.6    6
(AR707082) Sequence 25 from patent US 6933145.                     34   1.6    6
(AC157076) Bos taurus clone CH240-62L22, WORKING DRAFT SEQUE...    42   1.9    3
(AM423417) Vitis vinifera contig VV78X032734.4, whole genome...    36   2.0    2
(AC146877) Bos taurus clone CH240-454D21, WORKING DRAFT SEQU...    44   2.1    3
(AB267275) Rhagophthalmus ohbai mitochondrial DNA, complete ...    36   2.1    4
(AC172237) Bos taurus clone CH240-158N12, WORKING DRAFT SEQU...    44   2.9    5
(AC189478) Brassica rapa subsp. pekinensis clone KBrB081E09,...    32   3.0    2
(AM448261) Vitis vinifera contig VV78X160880.22, whole genom...    34   3.2    2
(AM445960) Vitis vinifera contig VV78X242405.4, whole genome...    38   3.6    3
(ER915493) AH_PBa0064B21.g1 AH_PBa Amaranthus hypochondriacu...    34   3.9    2
(AL603762) Human DNA sequence *** SEQUENCING CANCELLED *** f...    38   4.2    3
(AB185201) Octopus vulgaris oct-GnRHR gene for GnRH receptor...    40   4.9    2
(BX470071) Zebrafish DNA sequence from clone DKEY-233P4 in l...    36   4.9    4
(AE000783) Borrelia burgdorferi B31, complete genome.              32   5.1    14
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ...    34   5.1    5
(AC160738) Bos taurus clone CH240-82H8, WORKING DRAFT SEQUEN...    44   5.4    3
(AC169515) Medicago truncatula chromosome 7 BAC clone mth2-6...    44   6.0    1
(DQ405274) Bos taurus chromosome 9 clone BAC RPCI42-522F04, ...    44   6.0    1
(AC034192) Homo sapiens chromosome 3 clone RP11-416N8 map 3p...    44   6.0    1
(AC026214) Homo sapiens chromosome 3 clone RP11-717M12 map 3...    44   6.0    1
(AC162486) Bos taurus clone CH240-116J12, WORKING DRAFT SEQU...    44   6.0    1
(AC161901) Bos taurus clone CH240-100K21, WORKING DRAFT SEQU...    44   6.0    1
(AC160495) Bos taurus clone CH240-86K19, WORKING DRAFT SEQUE...    44   6.0    1
(AC160324) Bos taurus clone CH240-37N22, WORKING DRAFT SEQUE...    44   6.0    1
(AC160284) Bos taurus clone CH240-83G22, WORKING DRAFT SEQUE...    44   6.0    1
(AC157415) Bos taurus clone CH240-66M24, WORKING DRAFT SEQUE...    44   6.0    1
(AC156844) Bos taurus clone CH240-65A18, WORKING DRAFT SEQUE...    44   6.0    1
(AC156731) Bos taurus clone CH240-39O24, WORKING DRAFT SEQUE...    44   6.0    1
(AC156482) Bos taurus clone CH240-53C21, WORKING DRAFT SEQUE...    44   6.0    1
(AC155687) Bos taurus clone CH240-40I10, WORKING DRAFT SEQUE...    44   6.0    1
(AC155012) Bos taurus clone CH240-35H15, WORKING DRAFT SEQUE...    44   6.0    1
(AC153458) Bos taurus clone CH240-12E19, WORKING DRAFT SEQUE...    44   6.0    1
(AC153391) Bos taurus clone CH240-20A11, WORKING DRAFT SEQUE...    44   6.0    1
(AC152883) Bos taurus clone CH240-13N24, WORKING DRAFT SEQUE...    44   6.0    1
(AC152882) Bos taurus clone CH240-13A19, WORKING DRAFT SEQUE...    44   6.0    1
(AC152263) Bos taurus clone CH240-4J1, WORKING DRAFT SEQUENC...    44   6.0    1
(AC151484) Bos taurus clone CH240-4D14, WORKING DRAFT SEQUEN...    44   6.0    1
(AC150956) Bos taurus clone CH240-208C3, WORKING DRAFT SEQUE...    44   6.0    1
(AC150570) Bos taurus clone CH240-171L13, WORKING DRAFT SEQU...    44   6.0    1
(AC109786) Bos taurus clone RP42-114N9, WORKING DRAFT SEQUEN...    44   6.0    1
(DQ280186) Muntiacus muntjak vaginalis chromosome 1 clone 05...    44   6.0    1
(AC026206) Homo sapiens chromosome 3 clone RP11-621C18 map 3...    44   6.0    1
(CU062544) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(AC230738) Bos taurus clone CH240-500J24, WORKING DRAFT SEQU...    44   6.0    1
(AC230681) Bos taurus clone CH240-501K7, WORKING DRAFT SEQUE...    44   6.0    1
(AC230592) Bos taurus clone CH240-504E11, WORKING DRAFT SEQU...    44   6.0    1
(AC230293) Bos taurus clone CH240-514E10, WORKING DRAFT SEQU...    44   6.0    1
(AC230270) Bos taurus clone CH240-514H24, WORKING DRAFT SEQU...    44   6.0    1
(AC230259) Bos taurus clone CH240-515C20, WORKING DRAFT SEQU...    44   6.0    1
(AC230163) Bos taurus clone CH240-519G10, WORKING DRAFT SEQU...    44   6.0    1
(AC230061) Bos taurus clone CH240-523F1, WORKING DRAFT SEQUE...    44   6.0    1
(AC225654) Muntiacus muntjak vaginalis clone CH244-288M15, W...    44   6.0    1
(AC224703) Bos taurus clone CH240-478D9, WORKING DRAFT SEQUE...    44   6.0    1
(AC224379) Bos taurus clone CH240-486F13, WORKING DRAFT SEQU...    44   6.0    1
(AC223703) Bos taurus clone CH240-460O12, WORKING DRAFT SEQU...    44   6.0    1
(AC223279) Bos taurus clone CH240-424H13, WORKING DRAFT SEQU...    44   6.0    1
(AC222733) Bos taurus clone CH240-440O22, WORKING DRAFT SEQU...    44   6.0    1
(AC222123) Bos taurus clone CH240-370J7, WORKING DRAFT SEQUE...    44   6.0    1
(AC221861) Bos taurus clone CH240-380O14, WORKING DRAFT SEQU...    44   6.0    1
(AC221310) Bos taurus clone CH240-403D23, WORKING DRAFT SEQU...    44   6.0    1
(AC220870) Bos taurus clone CH240-342E18, WORKING DRAFT SEQU...    44   6.0    1
(AC220451) Bos taurus clone CH240-358K11, WORKING DRAFT SEQU...    44   6.0    1
(AC220328) Bos taurus clone CH240-361H15, WORKING DRAFT SEQU...    44   6.0    1
(AC220319) Bos taurus clone CH240-369K15, WORKING DRAFT SEQU...    44   6.0    1
(AC220160) Bos taurus clone CH240-364I7, WORKING DRAFT SEQUE...    44   6.0    1
(AC219921) Bos taurus clone CH240-318H3, WORKING DRAFT SEQUE...    44   6.0    1
(AC219277) Bos taurus clone CH240-335A1, WORKING DRAFT SEQUE...    44   6.0    1
(AC218690) Bos taurus clone CH240-297N11, WORKING DRAFT SEQU...    44   6.0    1
(AC218689) Bos taurus clone CH240-297M6, WORKING DRAFT SEQUE...    44   6.0    1

>(BJ425082) Dictyostelium discoideum cDNA clone:ddv54g14, 5' end,
           single read.
          Length = 621

 Score = 1037 bits (523), Expect = 0.0
 Identities = 532/532 (100%)
 Strand = Plus / Plus


Query: 90  ctgcaagtgcagcaacaaaaaatggtttanatgtgaaccaatataactgtatggnggatc 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  ctgcaagtgcagcaacaaaaaatggtttanatgtgaaccaatataactgtatggnggatc 149


Query: 150 tttttacatcaaatcaaattttgaaccaggttaatttggcaaaccttaattataattttt 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tttttacatcaaatcaaattttgaaccaggttaatttggcaaaccttaattataattttt 209


Query: 210 gtgattttgttaaaggatttcaatgtaatactgctacttattttattgaaaaagtaacat 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gtgattttgttaaaggatttcaatgtaatactgctacttattttattgaaaaagtaacat 269


Query: 270 taaattatcctataggacaagttcccataccattaattacaactagttttgcatgtatac 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 taaattatcctataggacaagttcccataccattaattacaactagttttgcatgtatac 329


Query: 330 caacaatgactcaattagtaataaataatttcgatgttggatctttcatatcaacaaata 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caacaatgactcaattagtaataaataatttcgatgttggatctttcatatcaacaaata 389


Query: 390 atgttaaattacaaagattggaattaaataattgtacaaaattatatccattgccagttt 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atgttaaattacaaagattggaattaaataattgtacaaaattatatccattgccagttt 449


Query: 450 taagttcaattattgaanatgtttacatttttaataatgataattcgcacaatgagagta 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taagttcaattattgaanatgtttacatttttaataatgataattcgcacaatgagagta 509


Query: 510 gagtgtcaattgatttttcaagtattataaatttaagatcatttaccttggttgattata 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gagtgtcaattgatttttcaagtattataaatttaagatcatttaccttggttgattata 569


Query: 570 caagaaatgtgtcatatacaagattaataggtataccaacaacttttaaatt 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caagaaatgtgtcatatacaagattaataggtataccaacaacttttaaatt 621

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 706,670,020
Number of extensions: 44921874
Number of successful extensions: 3887110
Number of sequences better than 10.0: 166
Length of query: 630
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 607
Effective length of database: 93,106,754,628
Effective search space: 56515800059196
Effective search space used: 56515800059196
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.13
Homology vs Protein 
Query= Contig-U14845-1 (Contig-U14845-1Q) /CSM_Contig/Contig-U14845-1Q.Seq.d
         (630 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    44   0.005
AF160760_3(AF160760|pid:none) Arabidopsis thaliana BAC F15P11.         36   1.0
(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'...    35   2.3
AE001362_113(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.1
FN357294_12(FN357294|pid:none) Schistosoma mansoni genome sequen...    33   5.1
CP001146_939(CP001146|pid:none) Dictyoglomus thermophilum H-6-12...    33   6.7
(Q54WB9) RecName: Full=Probable cytochrome P450 513D1;          ...    33   8.8
AC011620_8(AC011620|pid:none) Arabidopsis thaliana chromosome II...    33   8.8
FN357619_18(FN357619|pid:none) Schistosoma mansoni genome sequen...    33   8.8
AJ250755_1(AJ250755|pid:none) Xenopus laevis mRNA for olfactory ...    33   8.8

>AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromosome
           2 map 5862124-6045772 strain AX4, complete sequence.
          Length = 1107

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
 Frame = +2

Query: 53  YLFLIIINLFLKTASAATKNGLXVNQYNCMXDLFTSNQILNQV--NLANLNYNFCDFVKG 226
           +L LI+IN      ++ T N    N+Y+C+  L T+   +N+V  N  +L Y FC  ++
Sbjct: 19  FLILILINFSNPKVNSQTLNK---NEYDCLKSLLTNLGSINKVKINATSLEYLFCGTMEF 75

Query: 227 FQCNTATYFIEKVTLNYPIGQVPIP-LITTSFACIPTMTQLVINN--FDVGSFISTNNVK 397
              N   +  E       +GQ      +T  F+C   MT+L +++  +D   F ++
Sbjct: 76  SSPNVQIFCNEGSISKLNVGQANFTYTVTDDFSCFKNMTELSVDDIVYDKDKFYNSYPPN 135

Query: 398 LQRLELNNCTKLYPL--PVLS-----SIIEXVYIFNNDNSHNESRVSIDFSSIINLRSFT 556
            +    +    +Y    P++      SI +   I       N +++ ID  S++  + +
Sbjct: 136 AKEFSFDGTDLVYGTISPIIKKYNSMSIQKIPPIIKFSWYLNTTKIHID--SLVPFKGYF 193

Query: 557 LVDYTRNVSYTRL 595
           LV +  ++  +++
Sbjct: 194 LVSFDNDLDGSKI 206

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 792,414,641
Number of extensions: 14186682
Number of successful extensions: 25939
Number of sequences better than 10.0: 10
Number of HSP's gapped: 25895
Number of HSP's successfully gapped: 10
Length of query: 210
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 87
Effective length of database: 653,084,107
Effective search space: 56818317309
Effective search space used: 56818317309
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.48  gvh: 0.62  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.22
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for Contig-U14845-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0