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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14838-1
Contig ID Contig-U14838-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14838-1 (Contig-U14838-1Q) /CSM_Contig/Contig-U14838-1Q.Seq.d
AAAATAAATTTTTAAGACATCAAAATTATAAATAAAAATATTATAAAATG
GTGTTCAATAGAATTTTTGGTATTCCAAATGATGATAAAGTAAGCTTAAA
AAAATATAGAATAAAAATTTTTGAACATATTCTCTTGGTTTTAAGTTTTA
CTGTAATTTGTTACTTTATCATTGAAAGGAATATAACAAATAGAGTTGTT
TCAATAACTGCAGATTATCAAGAAAAAATAAATCCTCCTCATTTTTATGT
TATTTTTAATACCTATGAAATTTCATTATTTTTTTTATATTCTGTAATTT
TTAATAGATATTATTACGATGAAAAGGGTAATTATGTTATGGAGCAATTG
GTAAATTGTGTTAATAATAATAAATTACTAGTTGGGGATCTTGATTGTGC
ATATGCAATTAATTCCACCTTTGTTTTAATATCACCAGATTTCGTTGGTT
ATTATTCAACTGATGAAATGGCTTTGGGAGAAAAAGAGTTTTTAGAGATA
AATGTAGTTGCTGGTTATTTTGATCTTGGAGTTCCATCTTTCCCAATTTC
CGTATGGTTTGGAGATGATAAATATTATTCAGATTCATCACAACAATTTA
CATTGGGAACATCAAAAAAAATAATAAAAACATTTGGTGATGAAAAAGAA
GTGTTTATTAATTCTGTTGCAACTAGTAACTCAAGGCAAATTAAACAAAG
TGTTGCAAGAGCATTTACTTTATCTTATTCAATTTATTTTAATGATGTTG
CAGTGATAACAGAAAAAACTGAATCAAATTTTGAACTTGCAATTAGAATT
CTTTCAGACATTGGTTCATATATTACAGTTTTGATTACAATAGTTGGTGC
AATTTGTTCAAGAGTTATTACAAGATTATTGATTAAAGATAAAGGTGGTT
GGCTTGATACTCAAGCACATGAATGTATTACATATCATTATGATCAAATT
AAATTAAAAAATTATGAAATGTATAAAATGGGTGTTGAAGGTAAATATCC
AAAAAATGATAATATTAATAATTCTAATATTGATATCGATTCAAGTAGTA
TTCAAAAAATTAATTCATAATTAATTTTGTAATAATATAAATAAAA
Gap no gap
Contig length 1096
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3969250
End point 3968154
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14838
List of clone(s) 

est1=VHK629E,1,1097
Translated Amino Acid sequence 
nkflrhqnyk*KYYKMVFNRIFGIPNDDKVSLKKYRIKIFEHILLVLSFTVICYFIIERN
ITNRVVSITADYQEKINPPHFYVIFNTYEISLFFLYSVIFNRYYYDEKGNYVMEQLVNCV
NNNKLLVGDLDCAYAINSTFVLISPDFVGYYSTDEMALGEKEFLEINVVAGYFDLGVPSF
PISVWFGDDKYYSDSSQQFTLGTSKKIIKTFGDEKEVFINSVATSNSRQIKQSVARAFTL
SYSIYFNDVAVITEKTESNFELAIRILSDIGSYITVLITIVGAICSRVITRLLIKDKGGW
LDTQAHECITYHYDQIKLKNYEMYKMGVEGKYPKNDNINNSNIDIDSSSIQKINS*lil*
*yk*
Translated Amino Acid sequence (All Frames) 
Frame A:
kinf*dikiinkniikwcsieflvfqmmik*a*knie*kflnifswf*vll*fvtlslkg
i*qielfq*lqiikkk*illifmlflipmkfhyffyil*flidiitmkrvimlwsnw*iv
liiiny*lgilivhmqlipplf*yhqislviiqlmkwlwekksf*r*m*llvililefhl
sqfpygleminiiqihhnnlhwehqkk**khlvmkkkcllillqlvtqgklnkvlqehll
yliqfilmmlq**qkklnqilnlqleffqtlvhilqf*lq*lvqfvqellqdy*lkikvv
glilkhmnvlhiimikln*kimkcikwvlkvniqkmiiliililisiqvvfkklihn*fc
nnink


Frame B:
k*ifktskl*ikil*ngvq*nfwysk***sklkki*nknf*tyslgfkfycnlllyh*ke
ynk*scfnncrlsrknksssflcyf*yl*nfiiffifcnf**illr*kg*lcygaigklc
****itswgs*lcicn*fhlcfnitrfrwllfn**ngfgrkrvfrdkcscwlf*swssif
pnfrmvwr**ilfrfittiyignikknnkniw**krsvy*fccn**lkan*tkccksiyf
ilfnlf**ccsdnrkn*ikf*tcn*nsfrhwfiyysfdynswcnlfksyykiid*r*rwl
a*ysst*myyisl*sn*ikkl*nv*ngc*r*iskk**y**f*y*yrfk*yskn*fiinfv
ii*ik


Frame C:
nkflrhqnyk*KYYKMVFNRIFGIPNDDKVSLKKYRIKIFEHILLVLSFTVICYFIIERN
ITNRVVSITADYQEKINPPHFYVIFNTYEISLFFLYSVIFNRYYYDEKGNYVMEQLVNCV
NNNKLLVGDLDCAYAINSTFVLISPDFVGYYSTDEMALGEKEFLEINVVAGYFDLGVPSF
PISVWFGDDKYYSDSSQQFTLGTSKKIIKTFGDEKEVFINSVATSNSRQIKQSVARAFTL
SYSIYFNDVAVITEKTESNFELAIRILSDIGSYITVLITIVGAICSRVITRLLIKDKGGW
LDTQAHECITYHYDQIKLKNYEMYKMGVEGKYPKNDNINNSNIDIDSSSIQKINS*lil*
*yk*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14838-1 (Contig-U14838-1Q)
/CSM_Contig/Contig-U14838-1Q.Seq.d
         (1096 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14838-1 (Contig-U14838-1Q) /CSM_Contig/Conti...  1939  0.0
Contig-U11711-1 (Contig-U11711-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U04005-1 (Contig-U04005-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13416-1 (Contig-U13416-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11369-1 (Contig-U11369-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11715-1 (Contig-U11715-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U08573-1 (Contig-U08573-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U04769-1 (Contig-U04769-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U01680-1 (Contig-U01680-1Q) /CSM_Contig/Conti...    38  0.020

>Contig-U14838-1 (Contig-U14838-1Q) /CSM_Contig/Contig-U14838-1Q.Seq.d
          Length = 1096

 Score = 1939 bits (978), Expect = 0.0
 Identities = 1024/1047 (97%)
 Strand = Plus / Plus

                                                                        
Query: 50   ggtgttcaatagaatttttggtattccaaatgatgataaagtaagcttnnnnnnntatag 109
            ||||||||||||||||||||||||||||||||||||||||||||||||       |||||
Sbjct: 50   ggtgttcaatagaatttttggtattccaaatgatgataaagtaagcttaaaaaaatatag 109

                                                                        
Query: 110  aataaaaatttttgaacatattctcttggttttaagttttactgtaatttgttactttat 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110  aataaaaatttttgaacatattctcttggttttaagttttactgtaatttgttactttat 169

                                                                        
Query: 170  cattgaaaggaatataacaaatagagttgtttcaataactgcagattatcaagaaaaaat 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170  cattgaaaggaatataacaaatagagttgtttcaataactgcagattatcaagaaaaaat 229

                                                                        
Query: 230  aaatcctcctcatttttatgttatttttaatacctatgaaatttcattannnnnnnnata 289
            |||||||||||||||||||||||||||||||||||||||||||||||||        |||
Sbjct: 230  aaatcctcctcatttttatgttatttttaatacctatgaaatttcattattttttttata 289

                                                                        
Query: 290  ttctgtaatttttaatagatattattacgatgaaaagggtaattatgttatggagcaatt 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290  ttctgtaatttttaatagatattattacgatgaaaagggtaattatgttatggagcaatt 349

                                                                        
Query: 350  ggtaaattgtgttaataataataaattactagttggggatcttgattgtgcatatgcaat 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350  ggtaaattgtgttaataataataaattactagttggggatcttgattgtgcatatgcaat 409

                                                                        
Query: 410  taattccacctttgttttaatatcaccagatttcgttggttattattcaactgatgaaat 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410  taattccacctttgttttaatatcaccagatttcgttggttattattcaactgatgaaat 469

                                                                        
Query: 470  ggctttgggagaaaaagagtttttagagataaatgtagttgctggttattttgatcttgg 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470  ggctttgggagaaaaagagtttttagagataaatgtagttgctggttattttgatcttgg 529

                                                                        
Query: 530  agttccatctttcccaatttccgtatggtttggagatgataaatattattcagattcatc 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530  agttccatctttcccaatttccgtatggtttggagatgataaatattattcagattcatc 589

                                                                        
Query: 590  acaacaatttacattgggaacatcnnnnnnnntaataaaaacatttggtgatgaaaaaga 649
            ||||||||||||||||||||||||        ||||||||||||||||||||||||||||
Sbjct: 590  acaacaatttacattgggaacatcaaaaaaaataataaaaacatttggtgatgaaaaaga 649

                                                                        
Query: 650  agtgtttattaattctgttgcaactagtaactcaaggcaaattaaacaaagtgttgcaag 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  agtgtttattaattctgttgcaactagtaactcaaggcaaattaaacaaagtgttgcaag 709

                                                                        
Query: 710  agcatttactttatcttattcaatttattttaatgatgttgcagtgataacagaaaaaac 769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  agcatttactttatcttattcaatttattttaatgatgttgcagtgataacagaaaaaac 769

                                                                        
Query: 770  tgaatcaaattttgaacttgcaattagaattctttcagacattggttcatatattacagt 829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  tgaatcaaattttgaacttgcaattagaattctttcagacattggttcatatattacagt 829

                                                                        
Query: 830  tttgattacaatagttggtgcaatttgttcaagagttattacaagattattgattaaaga 889
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  tttgattacaatagttggtgcaatttgttcaagagttattacaagattattgattaaaga 889

                                                                        
Query: 890  taaaggtggttggcttgatactcaagcacatgaatgtattacatatcattatgatcaaat 949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  taaaggtggttggcttgatactcaagcacatgaatgtattacatatcattatgatcaaat 949

                                                                        
Query: 950  taaattaaaaaattatgaaatgtataaaatgggtgttgaaggtaaatatccaaaaaatga 1009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  taaattaaaaaattatgaaatgtataaaatgggtgttgaaggtaaatatccaaaaaatga 1009

                                                                        
Query: 1010 taatattaataattctaatattgatatcgattcaagtagtattcaaaaaattaattcata 1069
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 taatattaataattctaatattgatatcgattcaagtagtattcaaaaaattaattcata 1069

                                       
Query: 1070 attaattttgtaataatataaataaaa 1096
            |||||||||||||||||||||||||||
Sbjct: 1070 attaattttgtaataatataaataaaa 1096


>Contig-U11711-1 (Contig-U11711-1Q) /CSM_Contig/Contig-U11711-1Q.Seq.d
          Length = 2138

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 1000 caaaaaatgataatattaataattctaatatt 1031
            |||||||| ||||||||||||||| |||||||
Sbjct: 96   caaaaaataataatattaataattttaatatt 127


 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1080 taataatataaataa 1094
            |||||||||||||||
Sbjct: 136  taataatataaataa 150


>Contig-U04005-1 (Contig-U04005-1Q) /CSM_Contig/Contig-U04005-1Q.Seq.d
          Length = 1296

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1007 tgataatattaataattctaa 1027
            |||||||||||||||||||||
Sbjct: 1079 tgataatattaataattctaa 1099


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,878
Number of Sequences: 6905
Number of extensions: 34878
Number of successful extensions: 4199
Number of sequences better than 10.0: 471
length of query: 1096
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1080
effective length of database: 5,564,391
effective search space: 6009542280
effective search space used: 6009542280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1. 3
Homology vs DNA 
Query= Contig-U14838-1 (Contig-U14838-1Q) /CSM_Contig/Contig-U14838-1Q.Seq.d
         (1096 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ424411) Dictyostelium discoideum cDNA clone:ddv52i08, 5' ...   648   0.0    4
(BJ443247) Dictyostelium discoideum cDNA clone:ddv52i08, 3' ...   642   0.0    3
(AJ595412) Arabidopsis thaliana T-DNA flanking sequence, lef...    50   0.18   1
(AP010136) Lotus japonicus genomic DNA, clone: LjT19A14, TM0...    38   0.41   2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   0.50   11
(AC112656) Homo sapiens X BAC RP11-555H23 (Roswell Park Canc...    48   0.71   1
(AC011749) Homo sapiens BAC clone RP11-455E3 from Y, complet...    48   0.71   1
(AC010135) Homo sapiens BAC clone RP11-128D13 from Y, comple...    48   0.71   1
(AC019125) Homo sapiens chromosome X clone RP11-555H23, WORK...    48   0.71   1
(AQ322175) RPCI11-97I18.TV RPCI-11 Homo sapiens genomic clon...    48   0.71   1
(EJ068505) 1095458062003 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.71   1
(EJ037949) 1095454080870 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.71   1
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    48   0.71   1
(DQ158857) Bigelowiella natans nucleomorph chromosome 2, com...    40   0.76   4
(EJ692576) 1092956008225 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.85   2
(AJ634268) Kluyveromyces thermotolerans complete mitochondri...    36   0.91   5
(DX495413) Cpl37290 Papaya Genomic DNA BAC Library Carica pa...    38   1.3    2
(AC109417) Rattus norvegicus clone CH230-157K7, *** SEQUENCI...    32   1.4    2
(AC152348) Medicago truncatula clone mth2-52e17, complete se...    38   1.9    4
(AL035476) Plasmodium falciparum MAL4P3.                           34   2.3    11
(CR376801) Zebrafish DNA sequence from clone CH211-13K18 in ...    38   2.4    8
(AX344800) Sequence 225 from Patent WO0200927.                     32   2.4    4
(AM451253) Vitis vinifera contig VV78X198913.17, whole genom...    36   2.5    4
(EJ323386) 1095403443277 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.7    2
(AC026340) Homo sapiens chromosome 12 clone RP11-534N15, WOR...    32   2.7    8
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    32   2.8    8
(BX664612) Zebrafish DNA sequence from clone DKEYP-78B3 in l...    46   2.8    1
(AC191340) Gallus gallus BAC clone CH261-149N5 from chromoso...    46   2.8    1
(G35456) STS h14a339 5, sequence tagged site.                      46   2.8    1
(BD242618) Methods and materials relating to novel CD39-like...    46   2.8    1
(AR639832) Sequence 8 from patent US 6858207.                      46   2.8    1
(AR362108) Sequence 8 from patent US 6600032.                      46   2.8    1
(AR244631) Sequence 42 from patent US 6476211.                     46   2.8    1
(AR244599) Sequence 8 from patent US 6476211.                      46   2.8    1
(AR227870) Sequence 8 from patent US 6447771.                      46   2.8    1
(AR210060) Sequence 8 from patent US 6387645.                      46   2.8    1
(AR181114) Sequence 59 from patent US 6335013.                     46   2.8    1
(AR181099) Sequence 42 from patent US 6335013.                     46   2.8    1
(AR181067) Sequence 8 from patent US 6335013.                      46   2.8    1
(AC005480) Homo sapiens PAC clone RP4-592G7 from 14q24.3, co...    46   2.8    1
(AQ275255) RPCI-5-1080F17T7 RPCI-5 Homo sapiens genomic clon...    46   2.8    1
(DE626552) Bombyx mori genomic DNA, Fosmid clone:GBMFno368_i...    46   2.8    1
(DE418619) Bombyx mori genomic DNA, BAC clone:18I2D.               46   2.8    1
(CC257262) CH261-162P5_RM1.1 CH261 Gallus gallus genomic clo...    46   2.8    1
(BW591111) Ciona savignyi cDNA, clone:csef001e15, 3'end, sin...    46   2.8    1
(BW550684) Ciona savignyi cDNA, clone:csga055o19, 3'end, sin...    46   2.8    1
(BW520463) Ciona savignyi cDNA, clone:csga055o19, 5'end, sin...    46   2.8    1
(U39230) Bacillus sp. SprA gene, partial cds and SprB, SprC,...    46   2.8    1
(AL731825) Bacillus thuringiensis subsp. israelensis plasmid...    46   2.8    1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   3.1    10
(CT008507) Mouse DNA sequence from clone CH25-94C24 on chrom...    40   3.6    4
(EJ056187) 1095456030355 Global-Ocean-Sampling_GS-26-01-01-1...    34   3.6    3
(CT009763) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   4.1    7
(CU570662) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.7    7
(AC091931) Homo sapiens chromosome 5 clone RP11-313L6, compl...    38   4.7    8
(AC097533) Homo sapiens BAC clone RP11-770K15 from 4, comple...    34   5.2    2
(BX119318) Human DNA sequence from clone DASS-49J3 on chromo...    34   5.3    2
(AL844509) Plasmodium falciparum chromosome 13.                    38   6.2    16
(DX493785) Cpl35645 Papaya Genomic DNA BAC Library Carica pa...    38   6.3    2
(AL133238) Human chromosome 14 DNA sequence BAC C-2510G9 of ...    38   6.4    5
(AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   7.1    9
(DX496674) Cpl38574 Papaya Genomic DNA BAC Library Carica pa...    38   7.3    2
(AC178559) Strongylocentrotus purpuratus clone R3-113J22, WO...    34   8.1    7
(AC169515) Medicago truncatula chromosome 7 BAC clone mth2-6...    34   8.2    7
(AC216285) Homo sapiens FOSMID clone ABC11-49645000N6 from c...    44   8.5    3
(AC170895) Mus musculus chromosome 18 clone RP23-424C1, WORK...    42   8.6    8
(AY552545) Uncultured marine gamma proteobacterium EBAC20E09...    36   9.1    7

>(BJ424411) Dictyostelium discoideum cDNA clone:ddv52i08, 5' end,
           single read.
          Length = 644

 Score =  648 bits (327), Expect(4) = 0.0
 Identities = 327/327 (100%)
 Strand = Plus / Plus


Query: 287 atattctgtaatttttaatagatattattacgatgaaaagggtaattatgttatggagca 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atattctgtaatttttaatagatattattacgatgaaaagggtaattatgttatggagca 346


Query: 347 attggtaaattgtgttaataataataaattactagttggggatcttgattgtgcatatgc 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 attggtaaattgtgttaataataataaattactagttggggatcttgattgtgcatatgc 406


Query: 407 aattaattccacctttgttttaatatcaccagatttcgttggttattattcaactgatga 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aattaattccacctttgttttaatatcaccagatttcgttggttattattcaactgatga 466


Query: 467 aatggctttgggagaaaaagagtttttagagataaatgtagttgctggttattttgatct 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aatggctttgggagaaaaagagtttttagagataaatgtagttgctggttattttgatct 526


Query: 527 tggagttccatctttcccaatttccgtatggtttggagatgataaatattattcagattc 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tggagttccatctttcccaatttccgtatggtttggagatgataaatattattcagattc 586


Query: 587 atcacaacaatttacattgggaacatc 613
           |||||||||||||||||||||||||||
Sbjct: 587 atcacaacaatttacattgggaacatc 613

 Score =  345 bits (174), Expect(4) = 0.0
 Identities = 174/174 (100%)
 Strand = Plus / Plus


Query: 105 tatagaataaaaatttttgaacatattctcttggttttaagttttactgtaatttgttac 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tatagaataaaaatttttgaacatattctcttggttttaagttttactgtaatttgttac 164


Query: 165 tttatcattgaaaggaatataacaaatagagttgtttcaataactgcagattatcaagaa 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tttatcattgaaaggaatataacaaatagagttgtttcaataactgcagattatcaagaa 224


Query: 225 aaaataaatcctcctcatttttatgttatttttaatacctatgaaatttcatta 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 aaaataaatcctcctcatttttatgttatttttaatacctatgaaatttcatta 278

 Score = 95.6 bits (48), Expect(4) = 0.0
 Identities = 48/48 (100%)
 Strand = Plus / Plus


Query: 50 ggtgttcaatagaatttttggtattccaaatgatgataaagtaagctt 97
          ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 ggtgttcaatagaatttttggtattccaaatgatgataaagtaagctt 97

 Score = 46.1 bits (23), Expect(4) = 0.0
 Identities = 23/23 (100%)
 Strand = Plus / Plus


Query: 622 taataaaaacatttggtgatgaa 644
           |||||||||||||||||||||||
Sbjct: 622 taataaaaacatttggtgatgaa 644

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,294,531,114
Number of extensions: 83931898
Number of successful extensions: 7250333
Number of sequences better than 10.0: 69
Length of query: 1096
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1072
Effective length of database: 97,308,875,965
Effective search space: 104315115034480
Effective search space used: 104315115034480
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.13
Homology vs Protein 
Query= Contig-U14838-1 (Contig-U14838-1Q) /CSM_Contig/Contig-U14838-1Q.Seq.d
         (1096 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF288092_42(AF288092|pid:none) Naegleria gruberi mitochondrial D...    37   0.94
(O14290) RecName: Full=Uncharacterized protein C9E9.04;  &CU3296...    35   4.6
DQ440459_1(DQ440459|pid:none) Aedes aegypti clone AET-6433 RAS s...    35   6.1
AE014187_476(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   6.1

>AF288092_42(AF288092|pid:none) Naegleria gruberi mitochondrial DNA,
           complete genome.
          Length = 474

 Score = 37.4 bits (85), Expect = 0.94
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +3

Query: 198 VSITADYQEKINP------PHFYVIFNTYEISLFFLYSVIFNRYYYDEKGNYV 338
           + I  +Y E IN        ++Y I+N +E   F +Y+ IFN YYY+ K N +
Sbjct: 400 IDININYIEYINKNKNKFISNYYNIYNIFEKIEFNIYNYIFNNYYYNIKNNVI 452

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,415,221,460
Number of extensions: 25551148
Number of successful extensions: 69236
Number of sequences better than 10.0: 4
Number of HSP's gapped: 69202
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 235
Effective length of database: 630,428,194
Effective search space: 148150625590
Effective search space used: 148150625590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.63  gvh: 0.49  alm: 0.27  top: 0.30  tms: 0.20  mit: 0.31  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: plasma membrane
	 12.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U14838-1 is end
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0