| Contig-U14811-1 |
| Contig ID |
Contig-U14811-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
641 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
1869925 |
| End point |
1870556 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U14811 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 1. 2 |
| Homology vs DNA |
|
| protein update |
2009. 7.12 |
| Homology vs Protein |
Query= Contig-U14811-1 (Contig-U14811-1Q) /CSM_Contig/Contig-U14811-1Q.Seq.d
(641 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC116478_1(BC116478|pid:none) Danio rerio si:dkey-180p18.2, mRNA... 87 3e-16
BC155403_1(BC155403|pid:none) Xenopus tropicalis hypothetical pr... 83 8e-15
CP001336_2542(CP001336|pid:none) Desulfitobacterium hafniense DC... 50 4e-05
CP000568_453(CP000568|pid:none) Clostridium thermocellum ATCC 27... 47 5e-04
T49399(T49399)hypothetical protein B1D4.140 [imported] - Neurosp... 47 5e-04
AL355928_8(AL355928|pid:none) Neurospora crassa DNA linkage grou... 47 5e-04
CP001095_1622(CP001095|pid:none) Bifidobacterium longum subsp. i... 47 6e-04
CP000927_3362(CP000927|pid:none) Caulobacter sp. K31, complete g... 46 8e-04
CP000260_491(CP000260|pid:none) Streptococcus pyogenes MGAS10270... 46 8e-04
CP000605_661(CP000605|pid:none) Bifidobacterium longum DJO10A, c... 46 8e-04
BA000030_4899(BA000030|pid:none) Streptomyces avermitilis MA-468... 46 0.001
AP009493_2913(AP009493|pid:none) Streptomyces griseus subsp. gri... 45 0.001
CU633898_27(CU633898|pid:none) Podospora anserina genomic DNA ch... 45 0.002
CU468135_2099(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 45 0.002
FM204883_725(FM204883|pid:none) Streptococcus equi subsp. equi 4... 44 0.004
CP000139_2217(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 44 0.005
AL939120_199(AL939120|pid:none) Streptomyces coelicolor A3(2) co... 44 0.005
CP000653_1463(CP000653|pid:none) Enterobacter sp. 638, complete ... 43 0.007
CP001106_140(CP001106|pid:none) Eubacterium eligens ATCC 27750 p... 42 0.012
CP001287_1085(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 42 0.012
AE014133_640(AE014133|pid:none) Streptococcus mutans UA159, comp... 42 0.015
BA000039_812(BA000039|pid:none) Thermosynechococcus elongatus BP... 42 0.020
CP000964_3513(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 41 0.034
(Q9P7B3) RecName: Full=Putative cation exchanger C521.04c; &AL1... 41 0.034
AP006618_656(AP006618|pid:none) Nocardia farcinica IFM 10152 DNA... 41 0.034
CP001344_1596(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 41 0.034
CP000647_965(CP000647|pid:none) Klebsiella pneumoniae subsp. pne... 41 0.034
AE016827_838(AE016827|pid:none) Mannheimia succiniciproducens MB... 41 0.034
CP001129_682(CP001129|pid:none) Streptococcus equi subsp. zooepi... 41 0.034
CU928158_1040(CU928158|pid:none) Escherichia fergusonii ATCC 354... 40 0.044
AM946015_583(AM946015|pid:none) Streptococcus uberis 0140J compl... 40 0.044
CP000822_2052(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 40 0.044
CP000613_3306(CP000613|pid:none) Rhodospirillum centenum SW, com... 40 0.044
CP000088_1875(CP000088|pid:none) Thermobifida fusca YX, complete... 40 0.044
CP001096_837(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 40 0.044
BA000040_2954(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 40 0.058
BX572595_143(BX572595|pid:none) Rhodopseudomonas palustris CGA00... 40 0.058
AE015928_4606(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 40 0.058
CP000910_1852(CP000910|pid:none) Renibacterium salmoninarum ATCC... 40 0.058
CP001618_511(CP001618|pid:none) Beutenbergia cavernae DSM 12333,... 40 0.058
AM420293_566(AM420293|pid:none) Saccharopolyspora erythraea NRRL... 40 0.075
AP006725_1761(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 40 0.075
CU928175_129(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 40 0.075
AM920428_575(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 40 0.075
BA000032_1284(BA000032|pid:none) Vibrio parahaemolyticus RIMD 22... 39 0.098
AM260480_2536(AM260480|pid:none) Ralstonia eutropha H16 chromoso... 39 0.098
CP000850_232(CP000850|pid:none) Salinispora arenicola CNS-205, c... 39 0.098
CU633750_2234(CU633750|pid:none) Cupriavidus taiwanensis str. LM... 39 0.098
CP000667_205(CP000667|pid:none) Salinispora tropica CNB-440, com... 39 0.13
CP000880_1864(CP000880|pid:none) Salmonella enterica subsp. ariz... 39 0.13
CP001600_1324(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 39 0.13
FP236842_2232(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 39 0.13
AE005174_1147(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 39 0.17
CP000020_1442(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 39 0.17
CP001213_1194(CP001213|pid:none) Bifidobacterium animalis subsp.... 39 0.17
CU928145_983(CU928145|pid:none) Escherichia coli 55989 chromosom... 39 0.17
AE014075_1066(AE014075|pid:none) Escherichia coli CFT073, comple... 39 0.17
FM178379_1374(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 39 0.17
FM992695_943(FM992695|pid:none) Candida dubliniensis CD36 chromo... 38 0.22
CP000283_759(CP000283|pid:none) Rhodopseudomonas palustris BisB5... 38 0.22
AE017285_1755(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 38 0.22
BA000016_688(BA000016|pid:none) Clostridium perfringens str. 13 ... 38 0.22
CP000312_655(CP000312|pid:none) Clostridium perfringens SM101, c... 38 0.22
AP007172_17(AP007172|pid:none) Aspergillus oryzae RIB40 genomic ... 38 0.29
CP000463_4582(CP000463|pid:none) Rhodopseudomonas palustris BisA... 38 0.29
AL844509_358(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.29
CP000746_987(CP000746|pid:none) Actinobacillus succinogenes 130Z... 37 0.37
CP000901_2914(CP000901|pid:none) Yersinia pestis Angola, complet... 37 0.37
BX936398_1457(BX936398|pid:none) Yersinia pseudotuberculosis IP3... 37 0.37
CT573213_760(CT573213|pid:none) Frankia alni str. ACN14A chromos... 37 0.37
AE009952_2687(AE009952|pid:none) Yersinia pestis KIM, complete g... 37 0.37
CP000826_1752(CP000826|pid:none) Serratia proteamaculans 568, co... 37 0.37
CP000159_2329(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 37 0.49
AM286415_1511(AM286415|pid:none) Yersinia enterocolitica subsp. ... 37 0.49
CP000820_6290(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 37 0.49
CR382133_641(CR382133|pid:none) Debaryomyces hansenii chromosome... 37 0.64
FM954973_435(FM954973|pid:none) Vibrio splendidus LGP32 chromoso... 37 0.64
AE006468_1043(AE006468|pid:none) Salmonella enterica subsp. ente... 37 0.64
CR382133_589(CR382133|pid:none) Debaryomyces hansenii strain CBS... 37 0.64
CP000249_368(CP000249|pid:none) Frankia sp. CcI3, complete genome. 36 0.83
CP000474_3400(CP000474|pid:none) Arthrobacter aurescens TC1, com... 36 0.83
AE003853_1031(AE003853|pid:none) Vibrio cholerae O1 biovar eltor... 36 0.83
BX248356_108(BX248356|pid:none) Corynebacterium diphtheriae grav... 36 0.83
CP000886_2419(CP000886|pid:none) Salmonella enterica subsp. ente... 36 1.1
CP001616_1386(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 36 1.1
CP000091_1848(CP000091|pid:none) Ralstonia eutropha JMP134 chrom... 36 1.1
AP011115_5029(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 35 1.4
AP010904_2639(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 35 1.4
CP000110_1472(CP000110|pid:none) Synechococcus sp. CC9605, compl... 35 1.9
AE016796_1310(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos... 35 2.4
CP000753_2603(CP000753|pid:none) Shewanella baltica OS185, compl... 35 2.4
AL021487_2(AL021487|pid:none) Caenorhabditis elegans YAC Y45F10B... 35 2.4
CP000975_1235(CP000975|pid:none) Methylacidiphilum infernorum V4... 35 2.4
CP000325_235(CP000325|pid:none) Mycobacterium ulcerans Agy99, co... 35 2.4
AE014299_1941(AE014299|pid:none) Shewanella oneidensis MR-1, com... 34 3.2
CP000446_2269(CP000446|pid:none) Shewanella sp. MR-4, complete g... 34 3.2
CP000444_2333(CP000444|pid:none) Shewanella sp. MR-7, complete g... 34 3.2
CP000848_15(CP000848|pid:none) Rickettsia rickettsii str. 'Sheil... 34 3.2
CR936503_355(CR936503|pid:none) Lactobacillus sakei strain 23K c... 34 3.2
CP001404_1295(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 34 3.2
CP000961_1923(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 34 3.2
CP000821_2675(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 34 3.2
BA000035_921(BA000035|pid:none) Corynebacterium efficiens YS-314... 34 3.2
CP000479_955(CP000479|pid:none) Mycobacterium avium 104, complet... 34 3.2
CP000480_5507(CP000480|pid:none) Mycobacterium smegmatis str. MC... 34 3.2
CP000891_2702(CP000891|pid:none) Shewanella baltica OS195, compl... 34 4.1
CP000227_2697(CP000227|pid:none) Bacillus cereus Q1, complete ge... 33 5.4
CP001399_1393(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 33 5.4
CP000686_3065(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 33 5.4
AE014187_343(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 33 5.4
AE016958_809(AE016958|pid:none) Mycobacterium avium subsp. parat... 33 5.4
CP001400_1306(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 33 5.4
AE000516_914(AE000516|pid:none) Mycobacterium tuberculosis CDC15... 33 7.0
CP001159_135(CP001159|pid:none) Thalassiosira pseudonana CCMP133... 33 7.0
BX248336_306(BX248336|pid:none) Mycobacterium bovis subsp. bovis... 33 7.0
BX908798_168(BX908798|pid:none) Parachlamydia-related symbiont U... 33 7.0
CP000606_2141(CP000606|pid:none) Shewanella loihica PV-4, comple... 33 7.0
CP000302_2132(CP000302|pid:none) Shewanella denitrificans OS217,... 33 7.0
CP000384_4458(CP000384|pid:none) Mycobacterium sp. MCS, complete... 33 7.0
CP000507_1570(CP000507|pid:none) Shewanella amazonensis SB2B, co... 33 7.0
Z81088_9(Z81088|pid:none) Caenorhabditis elegans Cosmid F53F1, c... 33 7.0
CR382139_689(CR382139|pid:none) Debaryomyces hansenii strain CBS... 33 9.2
FN392322_673(FN392322|pid:none) Pichia pastoris GS115 chromosome... 33 9.2
CP000576_945(CP000576|pid:none) Prochlorococcus marinus str. MIT... 33 9.2
CP000462_1958(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 33 9.2
BT078430_1(BT078430|pid:none) Lepeophtheirus salmonis Pacific fo... 33 9.2
CP001133_626(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ... 33 9.2
CP000123_153(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 33 9.2
>BC116478_1(BC116478|pid:none) Danio rerio si:dkey-180p18.2, mRNA
(cDNA clone MGC:136271 IMAGE:8104534), complete cds.
Length = 764
Score = 87.4 bits (215), Expect = 3e-16
Identities = 42/112 (37%), Positives = 68/112 (60%)
Frame = +2
Query: 119 NPIEVKHQIQNHMFGFKPFKSKLTKRRVEERSPEVQSLYSDERKDTNPNSIPNTIGNVVY 298
N +E N+ FGF+ +KS +T+R +E+RS V+ LYS+ + T GN+VY
Sbjct: 101 NEVEAHKVANNYKFGFRKWKSHVTERPIEDRSDVVKELYSELNYVKQLSGSLVTAGNIVY 160
Query: 299 CIIFGFPLSILYVICSIILCLTYFGLPYGKLFWRLKGFVFXPFGKYLQLSTT 454
++FG+ +S+ Y + +++ T G+PYGKL +L G+ PFGK LQ S++
Sbjct: 161 VLLFGWWISLFYFLVGLLMFFTIAGIPYGKLCLQLSGYFIWPFGKALQKSSS 212
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 914,772,633
Number of extensions: 18005820
Number of successful extensions: 42065
Number of sequences better than 10.0: 128
Number of HSP's gapped: 42051
Number of HSP's successfully gapped: 173
Length of query: 213
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 90
Effective length of database: 653,084,107
Effective search space: 58777569630
Effective search space used: 58777569630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
1 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |