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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14809-1
Contig ID Contig-U14809-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14809-1 (Contig-U14809-1Q) /CSM_Contig/Contig-U14809-1Q.Seq.d
ACTGTTGGCCTACTGGNAAAAAAAAATAATACATATGTTATTAATTTCAA
AAAATGAGCGAAAGTCACAACCAAAATACAAATTTTACAAGTGGTAAAGG
TGAACCAATTACAGTTACAGAAGAATCAATTGAGAAAGCTAAAGGAATAA
TATCATCAGTTGAAAAAACACCACCAACTAAAAGAGGTAGAAATGATAAT
GAAAACATTGATACAGAACCAATACAATCAAATTACAATAACAACAACAA
CAACTTTAAAGTAAATAAATTCGATAATAAAGAAAGCACAGGTTTTAAAA
CTGCATCAAATTTACCAATTAGAGTATCAAAAGAAACATTAAATAATGAA
AAATCAAAAATTGATATTGAACATCAACAAGATATTGACATAAATAATTA
TAATCAAGTTTTATCAACATTAGAACAACCTTTTAAAGTTGATCGTGAGA
ACACTCAATAAACCTATAAATATAAAATTGTAAATAATAATAATAATAAA
GAGTTAATAAATTAAAAGAAAAAAAAAA
Gap no gap
Contig length 528
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 168425
End point 167915
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U14809
List of clone(s) 

est1=VHG880F,1,528
est2=VHG880Z,18,516
Translated Amino Acid sequence 
cwptgkkk*yicy*FQKMSESHNQNTNFTSGKGEPITVTEESIEKAKGIISSVEKTPPTK
RGRNDNENIDTEPIQSNYNNNNNNFKVNKFDNKESTGFKTASNLPIRVSKETLNNEKSKI
DIEHQQDIDINNYNQVLSTLEQPFKVDRENTQ*tykykivnnnnnkelin*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxkknntyvinfkk*akvttkiqilqvvkvnqlqlqknqlrklke*yhqlkkhhql
kevemimktliqnqynqititttttlk*insiikkaqvlklhqiyqleyqkkh*imknqk
lilninkilt*iiiikfyqh*nnllklivrtlnkpinikl*iiiiiks**ikrkkk


Frame B:
llaywxkkiihmllisknerksqpkykfykw*r*tnysyrrin*es*rnniis*knttn*
kr*k***kh*yrtntiklq*qqqql*sk*ir**rkhrf*ncikftn*sikrnik**kikn
*y*tstry*hk*l*ssfinirttf*s*s*ehsinl*i*nck*****rvnklkekk


Frame C:
cwptgkkk*yicy*FQKMSESHNQNTNFTSGKGEPITVTEESIEKAKGIISSVEKTPPTK
RGRNDNENIDTEPIQSNYNNNNNNFKVNKFDNKESTGFKTASNLPIRVSKETLNNEKSKI
DIEHQQDIDINNYNQVLSTLEQPFKVDRENTQ*tykykivnnnnnkelin*kkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14809-1 (Contig-U14809-1Q)
/CSM_Contig/Contig-U14809-1Q.Seq.d
         (528 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14809-1 (Contig-U14809-1Q) /CSM_Contig/Conti...   852  0.0
Contig-U11546-1 (Contig-U11546-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U01937-1 (Contig-U01937-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13086-1 (Contig-U13086-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U14696-1 (Contig-U14696-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U13976-1 (Contig-U13976-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U13366-1 (Contig-U13366-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U12710-1 (Contig-U12710-1Q) /CSM_Contig/Conti...    40  0.002

>Contig-U14809-1 (Contig-U14809-1Q) /CSM_Contig/Contig-U14809-1Q.Seq.d
          Length = 528

 Score =  852 bits (430), Expect = 0.0
 Identities = 430/430 (100%)
 Strand = Plus / Plus

                                                                       
Query: 27  taatacatatgttattaatttcaaaaaatgagcgaaagtcacaaccaaaatacaaatttt 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27  taatacatatgttattaatttcaaaaaatgagcgaaagtcacaaccaaaatacaaatttt 86

                                                                       
Query: 87  acaagtggtaaaggtgaaccaattacagttacagaagaatcaattgagaaagctaaagga 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  acaagtggtaaaggtgaaccaattacagttacagaagaatcaattgagaaagctaaagga 146

                                                                       
Query: 147 ataatatcatcagttgaaaaaacaccaccaactaaaagaggtagaaatgataatgaaaac 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ataatatcatcagttgaaaaaacaccaccaactaaaagaggtagaaatgataatgaaaac 206

                                                                       
Query: 207 attgatacagaaccaatacaatcaaattacaataacaacaacaacaactttaaagtaaat 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attgatacagaaccaatacaatcaaattacaataacaacaacaacaactttaaagtaaat 266

                                                                       
Query: 267 aaattcgataataaagaaagcacaggttttaaaactgcatcaaatttaccaattagagta 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaattcgataataaagaaagcacaggttttaaaactgcatcaaatttaccaattagagta 326

                                                                       
Query: 327 tcaaaagaaacattaaataatgaaaaatcaaaaattgatattgaacatcaacaagatatt 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcaaaagaaacattaaataatgaaaaatcaaaaattgatattgaacatcaacaagatatt 386

                                                                       
Query: 387 gacataaataattataatcaagttttatcaacattagaacaaccttttaaagttgatcgt 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gacataaataattataatcaagttttatcaacattagaacaaccttttaaagttgatcgt 446

                     
Query: 447 gagaacactc 456
           ||||||||||
Sbjct: 447 gagaacactc 456


 Score = 36.2 bits (18), Expect = 0.037
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 501 gagttaataaattaaaag 518
           ||||||||||||||||||
Sbjct: 501 gagttaataaattaaaag 518


>Contig-U11546-1 (Contig-U11546-1Q) /CSM_Contig/Contig-U11546-1Q.Seq.d
          Length = 1305

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 235 acaataacaacaacaacaactttaaa 260
           |||||||||||||| |||||||||||
Sbjct: 501 acaataacaacaactacaactttaaa 526


 Score = 30.2 bits (15), Expect = 2.3
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                  
Query: 208 ttgatacagaaccaatacaatca 230
           |||||||||||| | ||||||||
Sbjct: 501 ttgatacagaactattacaatca 479


>Contig-U01937-1 (Contig-U01937-1Q) /CSM_Contig/Contig-U01937-1Q.Seq.d
          Length = 1021

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 235 acaataacaacaacaacaactttaaa 260
           |||| |||||||||||||||||||||
Sbjct: 583 acaacaacaacaacaacaactttaaa 608


 Score = 34.2 bits (17), Expect = 0.15
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 234 tacaataacaacaacaacaac 254
           ||||| |||||||||||||||
Sbjct: 576 tacaacaacaacaacaacaac 596


 Score = 32.2 bits (16), Expect = 0.57
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 235 acaataacaacaacaacaac 254
           |||| |||||||||||||||
Sbjct: 580 acaacaacaacaacaacaac 599


 Score = 28.2 bits (14), Expect = 9.0
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 238 ataacaacaacaacaact 255
           ||||||||||| ||||||
Sbjct: 559 ataacaacaactacaact 576


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,357
Number of Sequences: 6905
Number of extensions: 20357
Number of successful extensions: 7420
Number of sequences better than 10.0: 1608
length of query: 528
length of database: 5,674,871
effective HSP length: 16
effective length of query: 512
effective length of database: 5,564,391
effective search space: 2848968192
effective search space used: 2848968192
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 1. 2
Homology vs DNA 
Query= Contig-U14809-1 (Contig-U14809-1Q) /CSM_Contig/Contig-U14809-1Q.Seq.d
         (528 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ422131) Dictyostelium discoideum cDNA clone:ddv44p20, 5' ...   852   0.0    2
(BJ440863) Dictyostelium discoideum cDNA clone:ddv44p20, 3' ...   846   0.0    1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    40   6e-05  8
(AC159703) Trypanosoma brucei chromosome 8 clone RPCI93-30K1...    56   0.001  1
(AC159405) Trypanosoma brucei chromosome 8 clone RPCI93-11J1...    56   0.001  1
(AQ944511) Sheared DNA-44A2.TF Sheared DNA Trypanosoma bruce...    56   0.001  1
(AC110499) Mus musculus chromosome 1, clone RP23-202J6, comp...    38   0.004  4
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    38   0.005  8
(BX294435) Zebrafish DNA sequence from clone DKEYP-32G6 in l...    54   0.005  1
(BX005103) Zebrafish DNA sequence from clone CH211-149O7 in ...    54   0.005  1
(CU151892) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    54   0.005  1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    36   0.006  7
(AC154630) Mus musculus BAC clone RP23-319C8 from 9, complet...    40   0.014  2
(AC174447) Mus musculus BAC clone RP23-377C21 from chromosom...    40   0.014  2
(AC170880) Mus musculus chromosome 9 clone RP24-196L17, WORK...    40   0.014  2
(FH283866) CHO_OF4167xk17r1.ab1 CHO_OF4 Nicotiana tabacum ge...    52   0.020  1
(DT248366) JGI_CAAU3123.rev CAAU Pimephales promelas brain 7...    52   0.020  1
(CJ449798) Macaca fascicularis mRNA, clone: QflA-15330, 5' e...    42   0.042  2
(AC097297) Rattus norvegicus clone CH230-81B4, WORKING DRAFT...    38   0.049  2
(AC135200) Rattus norvegicus clone CH230-246L6, *** SEQUENCI...    38   0.049  2
(BJ387622) Dictyostelium discoideum cDNA clone:dds3e21, 5' e...    32   0.059  3
(BJ367635) Dictyostelium discoideum cDNA clone:ddc43n09, 5' ...    40   0.060  2
(BJ411502) Dictyostelium discoideum cDNA clone:ddv4o14, 5' e...    32   0.065  4
(AL935034) Zebrafish DNA sequence from clone CH211-160A3 in ...    36   0.065  5
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    38   0.071  7
(AL840640) Mouse DNA sequence from clone RP23-83J23 on chrom...    44   0.075  2
(AC004688) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.076  8
(AB302068) Ipomoea nil CD gene for PI/GLO-related transcript...    50   0.081  1
(AC010144) Homo sapiens BAC clone RP11-309M4 from Y, complet...    50   0.081  1
(AC184319) Strongylocentrotus purpuratus clone R3-4005G4, WO...    50   0.081  1
(BJ411660) Dictyostelium discoideum cDNA clone:ddv5d11, 5' e...    40   0.082  2
(BJ337151) Dictyostelium discoideum cDNA clone:dda56o09, 5' ...    32   0.087  3
(BJ330276) Dictyostelium discoideum cDNA clone:dda31a01, 5' ...    40   0.095  2
(AL928976) Zebrafish DNA sequence from clone CH211-134B16 in...    36   0.10   4
(AC079638) Genomic sequence for Mus musculus, clone RP23-274...    40   0.10   2
(AF324831) Plasmodium falciparum adhesive-like protein pseud...    40   0.10   2
(CU302368) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.11   4
(BJ395500) Dictyostelium discoideum cDNA clone:dds39h05, 5' ...    34   0.11   3
(BJ362912) Dictyostelium discoideum cDNA clone:ddc24d05, 5' ...    40   0.11   2
(AC121048) Rattus norvegicus clone CH230-401K21, WORKING DRA...    48   0.11   2
(CK630226) AM0-AE0006-131201-022-H05 AE0006 Apis mellifera c...    32   0.12   3
(BJ362594) Dictyostelium discoideum cDNA clone:ddc22h17, 5' ...    40   0.12   2
(CK630252) AM0-AE0006-131201-021-A02 AE0006 Apis mellifera c...    32   0.12   3
(BJ392275) Dictyostelium discoideum cDNA clone:dds27f05, 5' ...    40   0.13   2
(AC184296) Strongylocentrotus purpuratus clone R3-64M6, WORK...    34   0.13   6
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    48   0.13   7
(BJ325726) Dictyostelium discoideum cDNA clone:dda1o03, 5' e...    32   0.14   3
(CK630217) AM0-AE0006-131201-022-D12 AE0006 Apis mellifera c...    32   0.15   3
(CP000609) Methanococcus maripaludis C5, complete genome.          44   0.15   14
(CK630249) AM0-AE0006-131201-022-E04 AE0006 Apis mellifera c...    32   0.15   3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    42   0.15   6
(CK630158) AM0-AE0006-131201-022-D11 AE0006 Apis mellifera c...    32   0.16   3
(AY077834) Sheeppox virus NISKHI, complete genome.                 34   0.16   7
(AY077832) Sheeppox virus 10700-99 strain TU-V02127, complet...    34   0.16   7
(AY077833) Sheeppox virus A, complete genome.                      34   0.16   7
(AC138332) Mus musculus chromosome 10 clone RP23-62C17 map 1...    36   0.18   2
(AC152258) Bos taurus clone CH240-4H10, WORKING DRAFT SEQUEN...    40   0.18   7
(AC167129) Mus musculus chromosome 5, clone RP23-397D16, com...    36   0.18   2
(AL157701) Human DNA sequence from clone RP4-628F15 on chrom...    34   0.19   2
(BJ325604) Dictyostelium discoideum cDNA clone:dda1i13, 5' e...    32   0.20   3
(CK630181) AM0-AE0006-131201-022-E09 AE0006 Apis mellifera c...    32   0.21   3
(CR792426) Zebrafish DNA sequence from clone DKEY-23A11 in l...    36   0.22   6
(CU074328) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.22   3
(CK630260) AM0-AE0006-131201-021-B08 AE0006 Apis mellifera c...    32   0.26   3
(BJ389026) Dictyostelium discoideum cDNA clone:dds17n01, 5' ...    38   0.26   2
(AC149455) Papio anubis clone RP41-363I16, WORKING DRAFT SEQ...    42   0.26   5
(CK630255) AM0-AE0006-131201-021-E03 AE0006 Apis mellifera c...    32   0.27   3
(CK630262) AM0-AE0006-131201-021-H07 AE0006 Apis mellifera c...    32   0.27   3
(AC147031) Pan troglodytes BAC clone RP43-98M7 from chromoso...    40   0.30   3
(CU570852) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.30   3
(BJ392233) Dictyostelium discoideum cDNA clone:dds26l20, 5' ...    32   0.31   3
(AC011816) Homo sapiens chromosome 3, clone RP11-129K12, com...    40   0.31   4
(AC142063) Rattus norvegicus clone CH230-207K13, WORKING DRA...    48   0.32   1
(AC121634) Rattus norvegicus clone CH230-169L18, *** SEQUENC...    48   0.32   1
(AC108535) Rattus norvegicus clone CH230-149D15, WORKING DRA...    48   0.32   1
(CU571192) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.32   1
(CT737126) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.32   1
(CG766917) TcB45.1_F12_T7 Tribolium BAC library Tribolium ca...    48   0.32   1
(EB320012) CNSN01-F-085533-501 Normalized CNS library (juven...    48   0.32   1
(BG226275) kq19f02.y1 TBN95TM-SSR Strongyloides stercoralis ...    48   0.32   1
(FG651990) G1142P317RK5.T0 Anolis carolinensis pooled normal...    48   0.32   1
(BJ370130) Dictyostelium discoideum cDNA clone:ddc53c04, 5' ...    32   0.33   3
(AY522555) Mus musculus striatal cannabinoid receptor type 1...    42   0.34   3
(BJ326689) Dictyostelium discoideum cDNA clone:dda17k16, 5' ...    32   0.36   3
(CU424428) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.37   4
(BB979510) Plasmodium berghei strain ANKA cDNA clone:OK00960...    40   0.38   2
(BJ396625) Dictyostelium discoideum cDNA clone:dds43i07, 5' ...    38   0.39   2
(BX088692) Zebrafish DNA sequence from clone CH211-208A20 in...    38   0.41   3
(AC135115) Mus musculus BAC clone RP24-251K13 from chromosom...    46   0.42   2
(CT573456) Zebrafish DNA sequence from clone CH211-190P6 in ...    36   0.42   6
(AC112823) Rattus norvegicus clone CH230-365N16, WORKING DRA...    40   0.44   2
(CQ613865) Sequence 41623 from Patent WO0171042.                   46   0.44   2
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.45   12
(AC181370) Strongylocentrotus purpuratus clone R3-49G20, WOR...    44   0.47   5
(CU861896) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.48   3
(AY077835) Goatpox virus Pellor, complete genome.                  34   0.48   7
(AY077836) Goatpox virus G20-LKV, complete genome.                 34   0.48   7
(AF409138) Lumpy skin disease virus isolate Neethling vaccin...    34   0.50   7
(BX005055) Zebrafish DNA sequence from clone CH211-188N23 in...    36   0.50   5
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin...    34   0.50   7

>(BJ422131) Dictyostelium discoideum cDNA clone:ddv44p20, 5' end,
           single read.
          Length = 528

 Score =  852 bits (430), Expect(2) = 0.0
 Identities = 430/430 (100%)
 Strand = Plus / Plus


Query: 27  taatacatatgttattaatttcaaaaaatgagcgaaagtcacaaccaaaatacaaatttt 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27  taatacatatgttattaatttcaaaaaatgagcgaaagtcacaaccaaaatacaaatttt 86


Query: 87  acaagtggtaaaggtgaaccaattacagttacagaagaatcaattgagaaagctaaagga 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  acaagtggtaaaggtgaaccaattacagttacagaagaatcaattgagaaagctaaagga 146


Query: 147 ataatatcatcagttgaaaaaacaccaccaactaaaagaggtagaaatgataatgaaaac 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ataatatcatcagttgaaaaaacaccaccaactaaaagaggtagaaatgataatgaaaac 206


Query: 207 attgatacagaaccaatacaatcaaattacaataacaacaacaacaactttaaagtaaat 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attgatacagaaccaatacaatcaaattacaataacaacaacaacaactttaaagtaaat 266


Query: 267 aaattcgataataaagaaagcacaggttttaaaactgcatcaaatttaccaattagagta 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaattcgataataaagaaagcacaggttttaaaactgcatcaaatttaccaattagagta 326


Query: 327 tcaaaagaaacattaaataatgaaaaatcaaaaattgatattgaacatcaacaagatatt 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcaaaagaaacattaaataatgaaaaatcaaaaattgatattgaacatcaacaagatatt 386


Query: 387 gacataaataattataatcaagttttatcaacattagaacaaccttttaaagttgatcgt 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gacataaataattataatcaagttttatcaacattagaacaaccttttaaagttgatcgt 446


Query: 447 gagaacactc 456
           ||||||||||
Sbjct: 447 gagaacactc 456

 Score = 32.2 bits (16), Expect(2) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 1  actgttggcctactgg 16
          ||||||||||||||||
Sbjct: 1  actgttggcctactgg 16

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 658,954,869
Number of extensions: 46486444
Number of successful extensions: 6104930
Number of sequences better than 10.0: 861
Length of query: 528
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 505
Effective length of database: 93,106,754,628
Effective search space: 47018911087140
Effective search space used: 47018911087140
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.12
Homology vs Protein 
Query= Contig-U14809-1 (Contig-U14809-1Q) /CSM_Contig/Contig-U14809-1Q.Seq.d
         (528 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001252_2780(CP001252|pid:none) Shewanella baltica OS223, compl...    36   0.67
AE013599_2158(AE013599|pid:none) Drosophila melanogaster chromos...    34   2.0
CP000024_386(CP000024|pid:none) Streptococcus thermophilus CNRZ1...    33   3.3
T24587(T24587) hypothetical protein T06E4.1 - Caenorhabditis ele...    33   3.3
CP000233_1607(CP000233|pid:none) Lactobacillus salivarius UCC118...    32   7.4
FJ464398_1(FJ464398|pid:none) Canis lupus familiaris BRCA2 (BRCA...    32   9.7
FJ464409_1(FJ464409|pid:none) Canis lupus familiaris BRCA2 (BRCA...    32   9.7
FJ464408_1(FJ464408|pid:none) Canis lupus familiaris BRCA2 (BRCA...    32   9.7
AB043895_1(AB043895|pid:none) Canis lupus familiaris Brca2 mRNA,...    32   9.7
FJ464407_1(FJ464407|pid:none) Canis lupus familiaris BRCA2 (BRCA...    32   9.7
FJ464405_1(FJ464405|pid:none) Canis lupus familiaris BRCA2 (BRCA...    32   9.7

>CP001252_2780(CP001252|pid:none) Shewanella baltica OS223, complete
            genome.
          Length = 1075

 Score = 35.8 bits (81), Expect = 0.67
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +3

Query: 45   FQKMSESHNQNTNFTSGKGEPITVTEESI--EKAKGIISSVEK 167
            FQK+SE  NQ+TNFTS   E I +  +++  EK K  + +V K
Sbjct: 984  FQKISEKFNQSTNFTSSLAESILLEAKTVQDEKTKSELCNVAK 1026

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 461,812,476
Number of extensions: 6100197
Number of successful extensions: 22872
Number of sequences better than 10.0: 11
Number of HSP's gapped: 22863
Number of HSP's successfully gapped: 11
Length of query: 176
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 56
Effective length of database: 662,793,784
Effective search space: 37116451904
Effective search space used: 37116451904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.69  gvh: 0.24  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for Contig-U14809-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0