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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14803-1
Contig ID Contig-U14803-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14803-1 (Contig-U14803-1Q) /CSM_Contig/Contig-U14803-1Q.Seq.d
AACAATTAATAATGGATTATTTGATGGTGATAAATCTATAGAATTTTTAT
TGACTAATTCAAAGATTCCTTCAATTGATTTTTCAAATAATTCAATTGAC
AGTAATTTTACAAATTGGATAAATAATAATAAATTCTCAACAATTAATAT
TGGAAATAACAAATTGTATGGAAATGTAAACCCATCTTGGTGTTCAGCAA
AAAATCTTATTATTTCAAATAATAAATTATCAGGCGAACTTCCAACATGT
TTCACTTGTCATTTCCAAGCTTCATTTATTAAAAGTAATTTTATTGGTAA
TGATTTTACTAATATAGAGACACCACAACCACTTTGTACAACATTAATTC
CAAATCTAAGATATGATACAAGTACAAAGATTTTAACTTTATATGGTAAA
GATTTAGGATTTGATCCAAAACAAATAAAGACAAAGGATGTAAGCATAGA
TTTCGATGATAAAAATTATGTTCCATCGGAATTTTTTACTGCTATTTATA
ATGATGATCCAAGTGCATTACAATTTTTAGATATAACATTTACAACTGCT
GCTCAAACTTATAGAGTATCAACAGTACAAAATCCACCATTAGTTACTAA
AATAGTACCATCAAATCCATTGAATACATTATCATTTGAAGGTTCATTTT
TCAATTATAATAAATCTTCATTTAGTGTTAAAGTTGGTACCAATTATTGT
GTGGTAACCTCGGCTACATTTTATGGTATTGTTTGTACTCTTTCAAATCC
TTCATCATCATATGATCCAAATGCAATTGTTTCAGTTACAATCAATGTTG
AAGATTACACCAAAGATTATAAATTAACAGTTTTAACTACAAATGTATAT
ACATACTTAAATAAAACAT
Gap no gap
Contig length 869
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2924374
End point 2925242
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U14803
List of clone(s) 

est1=VHG252F,1,632
est2=VHI642F,270,869
Translated Amino Acid sequence 
TINNGLFDGDKSIEFLLTNSKIPSIDFSNNSIDSNFTNWINNNKFSTINIGNNKLYGNVN
PSWCSAKNLIISNNKLSGELPTCFTCHFQASFIKSNFIGNDFTNIETPQPLCTTLIPNLR
YDTSTKILTLYGKDLGFDPKQIKTKDVSIDFDDKNYVPSEFFTAIYNDDPSALQFLDITF
TTAAQTYRVSTVQNPPLVTKIVPSNPLNTLSFEGSFFNYNKSSFSVKVGTNYCVVTSATF
YGIVCTLSNPSSSYDPNAIVSVTINVEDYTKDYKLTVLTTNVYTYLNKT
Translated Amino Acid sequence (All Frames) 
Frame A:
nn**wii*w**iyrifid*fkdsfn*ffk*fn*q*fykldk***ilnn*ywk*qivwkck
pilvfskksyyfk**iirrtsnmfhlsfpsfiy*k*fyw**fy*yrdttttlyninsksk
i*ykykdfnfiw*rfri*sktnkdkgckhrfr**klcsigifycyl***skcitifryni
ynccsnl*sinstkstisy*nstiksieyiii*rfifql**ifi*c*swyqllcgnlgyi
lwyclysfksfiii*skcncfsynqc*rlhqrl*insfnykciyilk*n


Frame B:
TINNGLFDGDKSIEFLLTNSKIPSIDFSNNSIDSNFTNWINNNKFSTINIGNNKLYGNVN
PSWCSAKNLIISNNKLSGELPTCFTCHFQASFIKSNFIGNDFTNIETPQPLCTTLIPNLR
YDTSTKILTLYGKDLGFDPKQIKTKDVSIDFDDKNYVPSEFFTAIYNDDPSALQFLDITF
TTAAQTYRVSTVQNPPLVTKIVPSNPLNTLSFEGSFFNYNKSSFSVKVGTNYCVVTSATF
YGIVCTLSNPSSSYDPNAIVSVTINVEDYTKDYKLTVLTTNVYTYLNKT


Frame C:
qlimdylmvinl*nfy*liqrflqlifqiiqltvilqig*iiinsqqlileitncmem*t
hlgvqqkillfqiinyqanfqhvslvisklhllkvillvmilli*rhhnhfvqh*fqi*d
miqvqrf*lymvki*dliqnk*rqrm*a*ismikimfhrnflllfimmiqvhynf*i*hl
qlllklieyqqykihh*llk*yhqih*ihyhlkvhfsiiinlhlvlklvpiivw*prlhf
mvlfvlfqilhhhmiqmqlfqlqsmlkitpkiin*qf*lqmyiht*ikh
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14803-1 (Contig-U14803-1Q)
/CSM_Contig/Contig-U14803-1Q.Seq.d
         (869 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14803-1 (Contig-U14803-1Q) /CSM_Contig/Conti...  1723  0.0
Contig-U05605-1 (Contig-U05605-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11755-1 (Contig-U11755-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U14187-1 (Contig-U14187-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U04993-1 (Contig-U04993-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U04484-1 (Contig-U04484-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U03714-1 (Contig-U03714-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U13445-1 (Contig-U13445-1Q) /CSM_Contig/Conti...    36  0.061
Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Conti...    36  0.061
Contig-U11723-1 (Contig-U11723-1Q) /CSM_Contig/Conti...    36  0.061

>Contig-U14803-1 (Contig-U14803-1Q) /CSM_Contig/Contig-U14803-1Q.Seq.d
          Length = 869

 Score = 1723 bits (869), Expect = 0.0
 Identities = 869/869 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaattaataatggattatttgatggtgataaatctatagaatttttattgactaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacaattaataatggattatttgatggtgataaatctatagaatttttattgactaattc 60

                                                                       
Query: 61  aaagattccttcaattgatttttcaaataattcaattgacagtaattttacaaattggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaagattccttcaattgatttttcaaataattcaattgacagtaattttacaaattggat 120

                                                                       
Query: 121 aaataataataaattctcaacaattaatattggaaataacaaattgtatggaaatgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaataataataaattctcaacaattaatattggaaataacaaattgtatggaaatgtaaa 180

                                                                       
Query: 181 cccatcttggtgttcagcaaaaaatcttattatttcaaataataaattatcaggcgaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cccatcttggtgttcagcaaaaaatcttattatttcaaataataaattatcaggcgaact 240

                                                                       
Query: 241 tccaacatgtttcacttgtcatttccaagcttcatttattaaaagtaattttattggtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tccaacatgtttcacttgtcatttccaagcttcatttattaaaagtaattttattggtaa 300

                                                                       
Query: 301 tgattttactaatatagagacaccacaaccactttgtacaacattaattccaaatctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgattttactaatatagagacaccacaaccactttgtacaacattaattccaaatctaag 360

                                                                       
Query: 361 atatgatacaagtacaaagattttaactttatatggtaaagatttaggatttgatccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atatgatacaagtacaaagattttaactttatatggtaaagatttaggatttgatccaaa 420

                                                                       
Query: 421 acaaataaagacaaaggatgtaagcatagatttcgatgataaaaattatgttccatcgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaaataaagacaaaggatgtaagcatagatttcgatgataaaaattatgttccatcgga 480

                                                                       
Query: 481 attttttactgctatttataatgatgatccaagtgcattacaatttttagatataacatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attttttactgctatttataatgatgatccaagtgcattacaatttttagatataacatt 540

                                                                       
Query: 541 tacaactgctgctcaaacttatagagtatcaacagtacaaaatccaccattagttactaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tacaactgctgctcaaacttatagagtatcaacagtacaaaatccaccattagttactaa 600

                                                                       
Query: 601 aatagtaccatcaaatccattgaatacattatcatttgaaggttcatttttcaattataa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aatagtaccatcaaatccattgaatacattatcatttgaaggttcatttttcaattataa 660

                                                                       
Query: 661 taaatcttcatttagtgttaaagttggtaccaattattgtgtggtaacctcggctacatt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taaatcttcatttagtgttaaagttggtaccaattattgtgtggtaacctcggctacatt 720

                                                                       
Query: 721 ttatggtattgtttgtactctttcaaatccttcatcatcatatgatccaaatgcaattgt 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttatggtattgtttgtactctttcaaatccttcatcatcatatgatccaaatgcaattgt 780

                                                                       
Query: 781 ttcagttacaatcaatgttgaagattacaccaaagattataaattaacagttttaactac 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttcagttacaatcaatgttgaagattacaccaaagattataaattaacagttttaactac 840

                                        
Query: 841 aaatgtatatacatacttaaataaaacat 869
           |||||||||||||||||||||||||||||
Sbjct: 841 aaatgtatatacatacttaaataaaacat 869


>Contig-U05605-1 (Contig-U05605-1Q) /CSM_Contig/Contig-U05605-1Q.Seq.d
          Length = 1183

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   aacaattaataatggattatt 21
           |||||||||||||||||||||
Sbjct: 113 aacaattaataatggattatt 133


>Contig-U11755-1 (Contig-U11755-1Q) /CSM_Contig/Contig-U11755-1Q.Seq.d
          Length = 1369

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    ttaataatggattatttgat 25
            ||||||||||||||||||||
Sbjct: 1120 ttaataatggattatttgat 1101


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,078
Number of Sequences: 6905
Number of extensions: 30078
Number of successful extensions: 3045
Number of sequences better than 10.0: 338
length of query: 869
length of database: 5,674,871
effective HSP length: 16
effective length of query: 853
effective length of database: 5,564,391
effective search space: 4746425523
effective search space used: 4746425523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1. 1
Homology vs DNA 
Query= Contig-U14803-1 (Contig-U14803-1Q) /CSM_Contig/Contig-U14803-1Q.Seq.d
         (869 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423164) Dictyostelium discoideum cDNA clone:ddv48c12, 5' ...  1189   0.0    1
(BJ421708) Dictyostelium discoideum cDNA clone:ddv43g14, 5' ...   926   0.0    2
(AL139137) Human DNA sequence from clone RP11-58O13 on chrom...    52   0.036  1
(EK865895) 1093018082091 Global-Ocean-Sampling_GS-33-01-01-1...    52   0.036  1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    40   0.039  12
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.13   19
(EJ438445) 1093015292388 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.14   1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   0.21   10
(AF404306) Rhizophydium sp. 136 mitochondrion, complete genome.    32   0.33   6
(AC005674) Homo sapiens chromosome 4 clone RP11-448G15, comp...    48   0.56   1
(ER404158) 1095353015123 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.56   1
(ER398647) 1095349024915 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.56   1
(EI734470) CHORI5141O15TR BAC library from the primary breas...    48   0.56   1
(BU780797) SJEGGC06 SJE Schistosoma japonicum cDNA, mRNA seq...    48   0.56   1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.75   16
(CU914223) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.2    5
(EK011208) 1092955184163 Global-Ocean-Sampling_GS-31-01-01-1...    34   1.5    2
(AC231320) Choloepus hoffmanni clone CH281-743B17, WORKING D...    36   1.6    5
(EK209180) 1095460092446 Global-Ocean-Sampling_GS-31-01-01-1...    38   1.8    2
(CU138552) Zebrafish DNA sequence from clone DKEY-251F7.           46   2.2    1
(AC116882) Mus musculus chromosome 8, clone RP24-435G18, com...    46   2.2    1
(AC215419) Solanum lycopersicum chromosome 2 clone C02HBa020...    46   2.2    1
(AR553842) Sequence 8973 from patent US 6747137.                   46   2.2    1
(AC155151) Bos taurus clone CH240-36F3, WORKING DRAFT SEQUEN...    46   2.2    1
(CU138577) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   2.2    1
(AC221849) Bos taurus clone CH240-380L14, WORKING DRAFT SEQU...    46   2.2    1
(ER470280) 1092963950493 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.2    1
(ER375857) 1093041167418 Global-Ocean-Sampling_GS-34-01-01-1...    46   2.2    1
(CL481440) SAIL_340_H11.v1 SAIL Collection Arabidopsis thali...    46   2.2    1
(EW729888) RS2BB82JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ...    46   2.2    1
(EW726299) RS2BB82TF RS2(RS) Raphanus sativus cDNA 5', mRNA ...    46   2.2    1
(AL159988) Human DNA sequence from clone RP11-480M11 on chro...    36   2.2    6
(EJ426241) 1093015230516 Global-Ocean-Sampling_GS-28-01-01-1...    34   2.8    3
(CU915769) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   3.1    5
(EJ867974) 1093018292438 Global-Ocean-Sampling_GS-30-02-01-1...    32   3.4    3
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   3.4    8
(AC107756) Mus musculus chromosome 18, clone RP23-214K19, co...    42   3.4    4
(AC146726) Otolemur garnettii clone CH256-1I3, WORKING DRAFT...    34   3.7    6
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    30   3.7    14
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    32   3.9    22
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g...    36   4.2    22
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    38   4.2    4
(AC195112) Pan troglodytes BAC clone CH251-703P4 from chromo...    36   4.3    7
(Z11874) Euglena gracilis Z chloroplast DNA.                       38   4.3    3
(AF016450) Caenorhabditis elegans cosmid B0238, complete seq...    40   4.5    3
(EJ696780) 1092956021355 Global-Ocean-Sampling_GS-30-02-01-1...    32   5.6    2
(AC129598) Mus musculus BAC clone RP23-283O5 from chromosome...    42   5.9    3
(AC214631) Populus trichocarpa clone POP071-C21, complete se...    38   6.0    5
(ER324745) 1092344201593 Global-Ocean-Sampling_GS-34-01-01-1...    36   6.3    2
(AZ682821) ENTLD61TF Entamoeba histolytica Sheared DNA Entam...    40   6.4    2
(AZ673401) ENTJJ72TF Entamoeba histolytica Sheared DNA Entam...    40   6.6    2
(EJ952773) 1093018956580 Global-Ocean-Sampling_GS-30-02-01-1...    36   6.6    2
(DH746794) Rattus norvegicus DNA, BAC clone: RNB1-323B24, 5'...    36   7.0    3
(DH780919) Rattus norvegicus DNA, BAC clone: RNB1-369D17, 3'...    36   7.1    3
(ER286384) 1092343572320 Global-Ocean-Sampling_GS-34-01-01-1...    36   7.3    2
(DQ229107) Chara vulgaris chloroplast, complete genome.            34   7.5    7
(AC210359) Solanum lycopersicum chromosome 7 clone C07HBa016...    32   8.0    8
(AC006406) Homo sapiens, clone hRPK.25_A_1, complete sequence.     38   8.5    6
(AM430926) Vitis vinifera contig VV78X133286.12, whole genom...    32   8.5    5
(CU570689) Zebrafish DNA sequence from clone CH73-266F23 in ...    44   8.7    1
(AL928675) Zebrafish DNA sequence from clone DKEY-13B16 in l...    44   8.7    1
(AC187707) Gasterosteus aculeatus clone VMRC28-60C14, comple...    44   8.7    1
(BX571736) Mouse DNA sequence from clone RP23-335L22 on chro...    44   8.7    1
(AC172989) Mus musculus BAC clone RP24-556J6 from chromosome...    44   8.7    1
(AC167818) Mus musculus BAC clone RP23-120O24 from chromosom...    44   8.7    1
(AC162941) Mus musculus BAC clone RP23-78N5 from chromosome ...    44   8.7    1
(AC154519) Mus musculus BAC clone RP23-216L13 from chromosom...    44   8.7    1
(AC144732) Mus musculus BAC clone RP24-244I18 from chromosom...    44   8.7    1
(AC127232) Mus musculus chromosome 15 clone RP24-555P18, com...    44   8.7    1
(Z72919) S.cerevisiae chromosome VII reading frame ORF YGR134w.    44   8.7    1
(CR380955) Candida glabrata strain CBS138 chromosome I compl...    44   8.7    1
(AY558112) Saccharomyces cerevisiae clone FLH113400.01X YGR1...    44   8.7    1
(AP010467) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   8.7    1
(AC161864) Medicago truncatula clone mth2-69d21, complete se...    44   8.7    1
(AB072271) Ipomoea nil transposon Tpn101 DNA, complete seque...    44   8.7    1
(DJ206155) Method for identification of useful proteins deri...    44   8.7    1
(DJ025875) Genome-wide DNA marker of Saccharomyces cerevisiae.     44   8.7    1
(AX831890) Sequence 2610 from Patent WO03072602.                   44   8.7    1
(AX820860) Sequence 2610 from Patent EP1338608.                    44   8.7    1
(AX594448) Sequence 102 from Patent EP1258494.                     44   8.7    1
(AR527954) Sequence 257 from patent US 6723837.                    44   8.7    1
(AP005014) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    44   8.7    1
(AC080078) Homo sapiens BAC clone RP11-461L13 from 4, comple...    44   8.7    1
(AC019349) Homo sapiens chromosome 17, clone RP11-156A24, co...    44   8.7    1
(AC160437) Bos taurus clone CH240-82B5, WORKING DRAFT SEQUEN...    44   8.7    1
(AC156545) Mus musculus chromosome 8 clone RP23-193F16 map 8...    44   8.7    1
(CU655982) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(AC067826) Homo sapiens chromosome 4 clone RP11-650G8 map 4,...    44   8.7    1
(CU019561) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   8.7    1
(AP000906) Homo sapiens genomic DNA, chromosome 11q22 clone:...    44   8.7    1
(AC205727) Zea mays chromosome 6 clone CH201-16N7; ZMMBBc001...    44   8.7    1
(AC176558) Strongylocentrotus purpuratus clone R3-3076H18, W...    44   8.7    1
(FI064747) CHO_OF7248xg18r1.ab1 CHO_OF7 Nicotiana tabacum ge...    44   8.7    1
(EK167625) 1095458060143 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.7    1
(AM622521) Entamoeba invadens IP1 GSS, clone inv104a03.p1k.        44   8.7    1
(EJ023882) 1095454012702 Global-Ocean-Sampling_GS-26-01-01-1...    44   8.7    1
(DU427068) 1098448206487 CHORI-243 Ovis aries genomic clone ...    44   8.7    1
(DU230928) 1098538184505 CHORI-243 Ovis aries genomic clone ...    44   8.7    1
(CT083541) Sus scrofa genomic clone PigE-264D2, genomic surv...    44   8.7    1
(CR000125) Forward strand read from insert in 5'HPRT inserti...    44   8.7    1

>(BJ423164) Dictyostelium discoideum cDNA clone:ddv48c12, 5' end,
           single read.
          Length = 600

 Score = 1189 bits (600), Expect = 0.0
 Identities = 600/600 (100%)
 Strand = Plus / Plus


Query: 270 cttcatttattaaaagtaattttattggtaatgattttactaatatagagacaccacaac 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cttcatttattaaaagtaattttattggtaatgattttactaatatagagacaccacaac 60


Query: 330 cactttgtacaacattaattccaaatctaagatatgatacaagtacaaagattttaactt 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cactttgtacaacattaattccaaatctaagatatgatacaagtacaaagattttaactt 120


Query: 390 tatatggtaaagatttaggatttgatccaaaacaaataaagacaaaggatgtaagcatag 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatatggtaaagatttaggatttgatccaaaacaaataaagacaaaggatgtaagcatag 180


Query: 450 atttcgatgataaaaattatgttccatcggaattttttactgctatttataatgatgatc 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttcgatgataaaaattatgttccatcggaattttttactgctatttataatgatgatc 240


Query: 510 caagtgcattacaatttttagatataacatttacaactgctgctcaaacttatagagtat 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caagtgcattacaatttttagatataacatttacaactgctgctcaaacttatagagtat 300


Query: 570 caacagtacaaaatccaccattagttactaaaatagtaccatcaaatccattgaatacat 629
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caacagtacaaaatccaccattagttactaaaatagtaccatcaaatccattgaatacat 360


Query: 630 tatcatttgaaggttcatttttcaattataataaatcttcatttagtgttaaagttggta 689
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatcatttgaaggttcatttttcaattataataaatcttcatttagtgttaaagttggta 420


Query: 690 ccaattattgtgtggtaacctcggctacattttatggtattgtttgtactctttcaaatc 749
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccaattattgtgtggtaacctcggctacattttatggtattgtttgtactctttcaaatc 480


Query: 750 cttcatcatcatatgatccaaatgcaattgtttcagttacaatcaatgttgaagattaca 809
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttcatcatcatatgatccaaatgcaattgtttcagttacaatcaatgttgaagattaca 540


Query: 810 ccaaagattataaattaacagttttaactacaaatgtatatacatacttaaataaaacat 869
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccaaagattataaattaacagttttaactacaaatgtatatacatacttaaataaaacat 600

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,081,157,673
Number of extensions: 66074384
Number of successful extensions: 5353931
Number of sequences better than 10.0: 129
Length of query: 869
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 845
Effective length of database: 97,308,875,965
Effective search space: 82226000190425
Effective search space used: 82226000190425
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.12
Homology vs Protein 
Query= Contig-U14803-1 (Contig-U14803-1Q) /CSM_Contig/Contig-U14803-1Q.Seq.d
         (869 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...   120   8e-26
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso...   114   4e-24
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    96   2e-18
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    93   1e-17
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    91   5e-17
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    90   9e-17
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    88   3e-16
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    83   1e-14
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    83   1e-14
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    81   4e-14
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    73   1e-11
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...    65   2e-09
AB261161_1(AB261161|pid:none) Oryza sativa Japonica Group gene f...    42   0.020
AL117265_17(AL117265|pid:none) Oryza sativa genomic DNA, chromos...    42   0.020
AP008207_363(AP008207|pid:none) Oryza sativa (japonica cultivar-...    42   0.027
AP007224_10(AP007224|pid:none) Oryza sativa Japonica Group genom...    40   0.078
AY756174_5(AY756174|pid:none) Oryza rufipogon putative leucine-r...    40   0.078
AK228464_1(AK228464|pid:none) Arabidopsis thaliana mRNA for prot...    40   0.10
AP004843_1(AP004843|pid:none) Oryza sativa Japonica Group genomi...    40   0.10
A86166(A86166) protein F21B7.6 [imported] - Arabidopsis thaliana...    40   0.10
AM443311_1(AM443311|pid:none) Vitis vinifera contig VV78X111487....    40   0.13
AC003974_21(AC003974|pid:none) Arabidopsis thaliana chromosome 2...    40   0.13
AK228145_1(AK228145|pid:none) Arabidopsis thaliana mRNA for dise...    40   0.13
AC124958_6(AC124958|pid:none) Medicago truncatula clone mth2-18i...    39   0.17
AC117075_42(AC117075|pid:none) Dictyostelium discoideum chromoso...    39   0.23
AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ...    39   0.23
EU794466_1(EU794466|pid:none) Malus floribunda clone M18-6Cs Hcr...    39   0.23
AJ297741_1(AJ297741|pid:none) Malus floribunda hcrVf3 gene.            39   0.23
DQ020574_1(DQ020574|pid:none) Solanum torvum verticillium wilt d...    39   0.23
AC115599_1(AC115599|pid:none) Dictyostelium discoideum chromosom...    39   0.23
AM442582_1(AM442582|pid:none) Vitis vinifera contig VV78X223820....    39   0.30
EU189477_1(EU189477|pid:none) Sinapis alba flagellin-sensing 2-l...    39   0.30
FN357442_3(FN357442|pid:none) Schistosoma mansoni genome sequenc...    38   0.39
AL732355_1(AL732355|pid:none) Oryza sativa genomic DNA, chromoso...    38   0.39
AP008210_541(AP008210|pid:none) Oryza sativa (japonica cultivar-...    38   0.39
AL731588_7(AL731588|pid:none) Oryza sativa (japonica cultivar-gr...    38   0.39
AL606652_8(AL606652|pid:none) Oryza sativa genomic DNA, chromoso...    38   0.39
AL732337_9(AL732337|pid:none) Oryza sativa genomic DNA, chromoso...    38   0.50
AB261162_1(AB261162|pid:none) Oryza sativa Japonica Group gene f...    38   0.50
AP008210_2086(AP008210|pid:none) Oryza sativa (japonica cultivar...    38   0.50
AB261164_1(AB261164|pid:none) Oryza sativa Japonica Group gene f...    38   0.50
AC026815_6(AC026815|pid:none) Oryza sativa chromosome 10 BAC OSJ...    38   0.50
AP008216_813(AP008216|pid:none) Oryza sativa (japonica cultivar-...    38   0.50
AC134521_27(AC134521|pid:none) Medicago truncatula clone mth2-31...    37   0.66
AC169177_29(AC169177|pid:none) Medicago truncatula chromosome 7 ...    37   0.66
AM456200_1(AM456200|pid:none) Vitis vinifera contig VV78X138047....    37   0.86
CP000102_143(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    37   0.86
AM423638_1(AM423638|pid:none) Vitis vinifera contig VV78X278209....    37   0.86
AM446172_3(AM446172|pid:none) Vitis vinifera contig VV78X205302....    37   0.86
AC169177_11(AC169177|pid:none) Medicago truncatula chromosome 7 ...    37   1.1
AC079131_10(AC079131|pid:none) Arabidopsis thaliana chromosome 1...    37   1.1
AM886139_1(AM886139|pid:none) Triticum turgidum subsp. durum pgi...    37   1.1
EU794459_1(EU794459|pid:none) Malus floribunda clone HB06-As HB0...    37   1.1
AM180656_1(AM180656|pid:none) Triticum aestivum pgip1 gene for p...    37   1.1
AP006064_12(AP006064|pid:none) Oryza sativa Japonica Group genom...    37   1.1
AP008207_366(AP008207|pid:none) Oryza sativa (japonica cultivar-...    36   1.5
AC079179_9(AC079179|pid:none) Oryza sativa chromosome 10 clone O...    36   1.5
AC005967_4(AC005967|pid:none) Arabidopsis thaliana chromosome 2 ...    36   1.5
AC165446_38(AC165446|pid:none) Medicago truncatula clone mth2-61...    36   1.5
AM447579_1(AM447579|pid:none) Vitis vinifera contig VV78X108323....    36   1.9
AY311527_1(AY311527|pid:none) Solanum torvum verticillium wilt d...    36   1.9
AJ297740_1(AJ297740|pid:none) Malus floribunda hcrVf2 gene.            36   1.9
EU680848_1(EU680848|pid:none) Lolium perenne ice recrystallizati...    36   1.9
AB261163_1(AB261163|pid:none) Oryza sativa Japonica Group gene f...    36   1.9
AP002063_9(AP002063|pid:none) Arabidopsis thaliana genomic DNA, ...    35   2.5
EU794461_1(EU794461|pid:none) Malus floribunda clone HB09s HB09p...    35   2.5
AM502253_58(AM502253|pid:none) Leishmania infantum chromosome 35.      35   2.5
AF136588_1(AF136588|pid:none) Arabidopsis thaliana leucine-rich ...    35   2.5
AB005240_4(AB005240|pid:none) Arabidopsis thaliana genomic DNA, ...    35   2.5
A84581(A84581) probable disease resistance protein [imported] - ...    35   2.5
AY534123_2(AY534123|pid:none) Aegilops tauschii transposons Casp...    35   2.5
CP000777_2644(CP000777|pid:none) Leptospira biflexa serovar Pato...    35   2.5
AK065753_1(AK065753|pid:none) Oryza sativa Japonica Group cDNA c...    35   2.5
AC026815_4(AC026815|pid:none) Oryza sativa chromosome 10 BAC OSJ...    35   2.5
AP003407_7(AP003407|pid:none) Oryza sativa Japonica Group genomi...    35   2.5
AC133779_2(AC133779|pid:none) Medicago truncatula clone mth2-27n...    35   2.5
AK100447_1(AK100447|pid:none) Oryza sativa Japonica Group cDNA c...    35   3.3
AC116984_31(AC116984|pid:none) Dictyostelium discoideum chromoso...    35   3.3
AM485738_1(AM485738|pid:none) Vitis vinifera contig VV78X150821....    35   3.3
AM435848_1(AM435848|pid:none) Vitis vinifera contig VV78X221157....    35   3.3
AM474228_3(AM474228|pid:none) Vitis vinifera contig VV78X147088....    35   3.3
AC140031_16(AC140031|pid:none) Medicago truncatula clone mth2-24...    35   3.3
AP008217_38(AP008217|pid:none) Oryza sativa (japonica cultivar-g...    35   3.3
AL662946_7(AL662946|pid:none) Oryza sativa genomic DNA, chromoso...    35   3.3
AP003770_2(AP003770|pid:none) Oryza sativa Japonica Group genomi...    35   3.3
AY262015_1(AY262015|pid:none) Solanum lycopersicoides resistance...    35   4.3
EU078152_1(EU078152|pid:none) Solanum chilense putative receptor...    35   4.3
FB796660_1(FB796660|pid:none) Sequence 15933 from Patent WO20080...    35   4.3
AC006436_11(AC006436|pid:none) Arabidopsis thaliana chromosome 2...    35   4.3
AC117082_5(AC117082|pid:none) Dictyostelium discoideum chromosom...    35   4.3
AC079678_3(AC079678|pid:none) Arabidopsis thaliana chromosome 1 ...    35   4.3
BT053644_1(BT053644|pid:none) Medicago truncatula clone MTYFT1G-...    35   4.3
CP000099_2602(CP000099|pid:none) Methanosarcina barkeri str. Fus...    35   4.3
AM429611_1(AM429611|pid:none) Vitis vinifera contig VV78X048836....    35   4.3
AP007224_8(AP007224|pid:none) Oryza sativa Japonica Group genomi...    35   4.3
AY756174_7(AY756174|pid:none) Oryza rufipogon putative leucine-r...    35   4.3
AC137994_39(AC137994|pid:none) Medicago truncatula clone mth2-23...    35   4.3
AC015448_9(AC015448|pid:none) Arabidopsis thaliana chromosome I ...    35   4.3
AK111680_1(AK111680|pid:none) Oryza sativa Japonica Group cDNA c...    35   4.3
AJ972661_1(AJ972661|pid:none) Glycine max pgip2 gene for polygal...    35   4.3
CQ768567_1(CQ768567|pid:none) Sequence 62 from Patent WO20040077...    35   4.3
AX120071_1(AX120071|pid:none) Sequence 54 from Patent WO0129240....    35   4.3
AC147959_7(AC147959|pid:none) Medicago truncatula clone mth2-11c...    35   4.3
AY056243_1(AY056243|pid:none) Arabidopsis thaliana unknown prote...    35   4.3
AK103073_1(AK103073|pid:none) Oryza sativa Japonica Group cDNA c...    34   5.6
AK226719_1(AK226719|pid:none) Arabidopsis thaliana mRNA for puta...    34   5.6
AC169177_15(AC169177|pid:none) Medicago truncatula chromosome 7 ...    34   5.6
AF272367_1(AF272367|pid:none) Lycopersicon esculentum verticilli...    34   5.6
A71400(A71400) probable disease resistance protein - Arabidopsis...    34   5.6
AY073233_1(AY073233|pid:none) Mus musculus olfactory receptor MO...    34   5.6
AC186954_17(AC186954|pid:none) Musa acuminata clone MA4_111B14, ...    34   5.6
BT042140_1(BT042140|pid:none) Zea mays full-length cDNA clone ZM...    34   5.6
AL928588_2(AL928588|pid:none) Mouse DNA sequence from clone RP23...    34   5.6
EU078148_1(EU078148|pid:none) Solanum chilense putative receptor...    34   5.6
AC149269_14(AC149269|pid:none) Medicago truncatula clone mth2-10...    34   5.6
(Q03655) RecName: Full=Probable 1,3-beta-glucanosyltransferase G...    34   5.6
BC141896_1(BC141896|pid:none) Mus musculus olfactory receptor 27...    34   5.6
FJ464553_1(FJ464553|pid:none) Solanum lycopersicum cultivar Crai...    34   5.6
AY714495_1(AY714495|pid:none) Oryza sativa (indica cultivar-grou...    34   5.6
AC144483_2(AC144483|pid:none) Medicago truncatula clone mth2-12f...    34   5.6
FB916251_1(FB916251|pid:none) Sequence 135524 from Patent WO2008...    34   5.6
BC101951_1(BC101951|pid:none) Mus musculus olfactory receptor 27...    34   5.6
BT064155_1(BT064155|pid:none) Zea mays full-length cDNA clone ZM...    34   5.6
FJ708791_1(FJ708791|pid:none) Arabidopsis thaliana leucine-rich ...    34   7.3
CT005251_102(CT005251|pid:none) Leishmania major strain Friedlin...    34   7.3
AP008210_1894(AP008210|pid:none) Oryza sativa (japonica cultivar...    34   7.3
AL732349_6(AL732349|pid:none) Oryza sativa genomic DNA, chromoso...    34   7.3
CP000879_1620(CP000879|pid:none) Petrotoga mobilis SJ95, complet...    34   7.3
AP005966_18(AP005966|pid:none) Oryza sativa Japonica Group genom...    34   7.3
AP008213_238(AP008213|pid:none) Oryza sativa (japonica cultivar-...    34   7.3
CT005251_90(CT005251|pid:none) Leishmania major strain Friedlin,...    34   7.3
(Q10302) Uncharacterized protein C22H10.09.  &CU329670_992(CU329...    34   7.3
AL606648_5(AL606648|pid:none) Oryza sativa genomic DNA, chromoso...    34   7.3
AC147430_6(AC147430|pid:none) Medicago truncatula clone mth2-71e...    34   7.3
AY282579_1(AY282579|pid:none) Solanum lycopersicoides disease re...    34   7.3
AM910996_624(AM910996|pid:none) Plasmodium knowlesi strain H chr...    34   7.3
AP003708_29(AP003708|pid:none) Oryza sativa Japonica Group genom...    34   7.3
AK242765_1(AK242765|pid:none) Oryza sativa Japonica Group cDNA, ...    34   7.3
EU189468_1(EU189468|pid:none) Chorispora tenella flagellin-sensi...    34   7.3
AP008215_662(AP008215|pid:none) Oryza sativa (japonica cultivar-...    34   7.3
FB916187_1(FB916187|pid:none) Sequence 135460 from Patent WO2008...    34   7.3
AF049920_1(AF049920|pid:none) Petunia x hybrida PGPS/D4 (PGPS/D4...    34   7.3
AC069159_25(AC069159|pid:none) Arabidopsis thaliana chromosome 1...    33   9.5
CP000685_3838(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   9.5
AF149413_19(AF149413|pid:none) Arabidopsis thaliana BAC T1N24.  ...    33   9.5
AJ303349_4(AJ303349|pid:none) Capsella rubella ORF1, ORF2, ORF3,...    33   9.5
AM478728_1(AM478728|pid:none) Vitis vinifera contig VV78X154946....    33   9.5
AC140550_14(AC140550|pid:none) Medicago truncatula clone mth2-54...    33   9.5
AB073628_1(AB073628|pid:none) Nicotiana tabacum mRNA for recepto...    33   9.5
AK065815_1(AK065815|pid:none) Oryza sativa Japonica Group cDNA c...    33   9.5

>AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromosome
           2 map 4657875-4914984 strain AX4, complete sequence.
          Length = 1501

 Score =  120 bits (300), Expect = 8e-26
 Identities = 74/225 (32%), Positives = 115/225 (51%)
 Frame = +2

Query: 122 NNNKFSTINIGNNKLYGNVNPSWCSAKNLIISNNKLSGELPTCFTCHFQASFIKSNFIGN 301
           N N    ++I NN + G +  S+CS  N   SNN  +G +P CF C F  + +++NF+GN
Sbjct: 344 NLNFTKNLDISNNNIVGTIPQSYCSISNTNFSNNGFTGLIPNCFIC-FMKNNLENNFLGN 402

Query: 302 DFTNIETPQPLCTTLIPNLRYDTSTKILTLYGKDLGFDPKQIKTKDVSIDFDDKNYVPSE 481
            FTN ++P   C  + P+LR  T    + + G++LGF+   I T     +   +  +PS
Sbjct: 403 YFTNKDSPNSYCGAIEPSLRMGTGK--IYMEGRNLGFNGSNIVTIP---NLQWEVEIPST 457

Query: 482 FFTAIYNDDPSALQFLDITFTTAAQTYRVSTVQNPPLVTKIVPSNPLNTLSFEGSFFNYN 661
            F+A Y    S  Q   I F     T     +QN P V+ +V   P  T+ F+GS F Y+
Sbjct: 458 RFSASYTY--STNQLFSIFFQNPGVTLFARVIQNNPTVS-MVTVYPNYTVIFDGSDFTYD 514

Query: 662 KSSFSVKVGTNYCVVTSATFYGIVCTLSNPSSSYDPNAIVSVTIN 796
           K+  S+ +   YC + S+TFY I C +SN     + N+ + +  N
Sbjct: 515 KTLISINISNYYCNIISSTFYRIECVISNAIEMTNSNSEIIIADN 559

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,280,259,323
Number of extensions: 25211699
Number of successful extensions: 117089
Number of sequences better than 10.0: 151
Number of HSP's gapped: 116707
Number of HSP's successfully gapped: 176
Length of query: 289
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 162
Effective length of database: 640,137,871
Effective search space: 103702335102
Effective search space used: 103702335102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U14803-1 is cyt
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0