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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02820-1
Contig ID Contig-U02820-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U02820-1 (Contig-U02820-1Q) /CSM_Contig/Contig-U02820-1Q.Seq.d
TATATCAATGTTATTAGTAAAGATAATTATTGATGATTTATCAACATTAC
CAATTACAATGGAACCAAAACAATATGATGAAATTGTATATCAATATACA
AAAACTATTCAATTATTTTGGAATAGTAATCAATTAAGTTCTATTCAAGT
TTCAATGGAACATATGTTTAAAAAATTAATGATGATGGTGATGAAAATAG
TAAAGAAAAAAAGAAGAAATCAATAATAAAATTATCAAATTATTCATTAT
ATTCAGTAATCATTCATAGTGGTAGATCACCAACTCATGGTCATTATTAT
AATTATAGTTGTACTAGTAGTAATAATAGTAATGGTAAACCAGTGGATTG
GTGTCTCTTTAATGATTCAATGGTAAAGATAACTGATGTTCAAACTTTTA
AAAATATTAACAAACAATTCTATACCGATGTGCCCTATATTTTATTTTAT
GTTAAAAATCCATCATTACCATCATCACCTATTGATAATACTATTGATAC
TACTAATAATGANGATGTATCTCCATGGATAAAACAATCAATTATTAAAG
AGAATCAAAATTTATTAAGTAATTTATAACTAAAATAAGAATTCTAAATT
CGGAACAATTTC
Gap no gap
Contig length 612
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 50365
End point 50984
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U02820
List of clone(s) 

est1=AFJ126Z,1,613
Translated Amino Acid sequence 
yinviskdny**finitnyngtkti**ncisiyknysiile**sikfyssfngtyv*KIN
DDGDENSKEKKKKSIIKLSNYSLYSVIIHSGRSPTHGHYYNYSCTSSNNSNGKPVDWCLF
NDSMVKITDVQTFKNINKQFYTDVPYILFYVKNPSLPSSPIDNTIDTTNNXDVSPWIKQS
IIKENQNLLSNL*lk*ef*irnnf
Translated Amino Acid sequence (All Frames) 
Frame A:
yinviskdny**finitnyngtkti**ncisiyknysiile**sikfyssfngtyv*KIN
DDGDENSKEKKKKSIIKLSNYSLYSVIIHSGRSPTHGHYYNYSCTSSNNSNGKPVDWCLF
NDSMVKITDVQTFKNINKQFYTDVPYILFYVKNPSLPSSPIDNTIDTTNNXDVSPWIKQS
IIKENQNLLSNL*lk*ef*irnnf


Frame B:
ismllvkiiiddlstlpitmepkqydeivyqytktiqlfwnsnqlssiqvsmehmfkklm
mmvmkivkkkrrnq**nyqiihyiq*sfivvdhqlmviiiiivvlvviivmvnqwigvsl
miqw*r*lmfkllkiltnnsipmcpifyfmlkihhyhhhlliillillimxmylhg*nnq
llkrikiy*viyn*nknskfgti


Frame C:
yqcy**r*llmiyqhyqlqwnqnnmmklyiniqklfnyfgivin*vlfkfqwniclkn**
*w**k**rkkeeinnkiiklfiifsnhs*w*itnswsll*l*ly******w*tsglvsl*
*fngkdn*csnf*ky*qtilyrcalyfilc*ksiitiity**yy*yy***xcismdktin
y*reskfik*fitkirilnseqf
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02820-1 (Contig-U02820-1Q)
/CSM_Contig/Contig-U02820-1Q.Seq.d
         (612 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02820-1 (Contig-U02820-1Q) /CSM_Contig/Conti...  1166  0.0
Contig-U06648-1 (Contig-U06648-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U12547-1 (Contig-U12547-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12474-1 (Contig-U12474-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09402-1 (Contig-U09402-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U02849-1 (Contig-U02849-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14434-1 (Contig-U14434-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13839-1 (Contig-U13839-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13585-1 (Contig-U13585-1Q) /CSM_Contig/Conti...    38  0.011

>Contig-U02820-1 (Contig-U02820-1Q) /CSM_Contig/Contig-U02820-1Q.Seq.d
          Length = 612

 Score = 1166 bits (588), Expect = 0.0
 Identities = 605/612 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatcaatgttattagtaaagataattattgatgatttatcaacattaccaattacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tatatcaatgttattagtaaagataattattgatgatttatcaacattaccaattacaat 60

                                                                       
Query: 61  ggaaccaaaacaatatgatgaaattgtatatcaatatacaaaaactattcaattattttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggaaccaaaacaatatgatgaaattgtatatcaatatacaaaaactattcaattattttg 120

                                                                       
Query: 121 gaatagtaatcaattaagttctattcaagtttcaatggaacatatgtttaaaaaattaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaatagtaatcaattaagttctattcaagtttcaatggaacatatgtttaaaaaattaat 180

                                                                       
Query: 181 gatgatggtgatgaaaatagtaaagnnnnnnngaagaaatcaataataaaattatcaaat 240
           |||||||||||||||||||||||||       ||||||||||||||||||||||||||||
Sbjct: 181 gatgatggtgatgaaaatagtaaagaaaaaaagaagaaatcaataataaaattatcaaat 240

                                                                       
Query: 241 tattcattatattcagtaatcattcatagtggtagatcaccaactcatggtcattattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tattcattatattcagtaatcattcatagtggtagatcaccaactcatggtcattattat 300

                                                                       
Query: 301 aattatagttgtactagtagtaataatagtaatggtaaaccagtggattggtgtctcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aattatagttgtactagtagtaataatagtaatggtaaaccagtggattggtgtctcttt 360

                                                                       
Query: 361 aatgattcaatggtaaagataactgatgttcaaacttttaaaaatattaacaaacaattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgattcaatggtaaagataactgatgttcaaacttttaaaaatattaacaaacaattc 420

                                                                       
Query: 421 tataccgatgtgccctatattttattttatgttaaaaatccatcattaccatcatcacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tataccgatgtgccctatattttattttatgttaaaaatccatcattaccatcatcacct 480

                                                                       
Query: 481 attgataatactattgatactactaataatgangatgtatctccatggataaaacaatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attgataatactattgatactactaataatgangatgtatctccatggataaaacaatca 540

                                                                       
Query: 541 attattaaagagaatcaaaatttattaagtaatttataactaaaataagaattctaaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attattaaagagaatcaaaatttattaagtaatttataactaaaataagaattctaaatt 600

                       
Query: 601 cggaacaatttc 612
           ||||||||||||
Sbjct: 601 cggaacaatttc 612


>Contig-U06648-1 (Contig-U06648-1Q) /CSM_Contig/Contig-U06648-1Q.Seq.d
          Length = 622

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 293 attattataattatagttgta 313
           |||||||||||||||||||||
Sbjct: 360 attattataattatagttgta 340


>Contig-U12547-1 (Contig-U12547-1Q) /CSM_Contig/Contig-U12547-1Q.Seq.d
          Length = 2329

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 299 ataattatagttgtactagtagtaataatagtaatggtaa 338
           ||||| |||||| || ||||| ||||||||||||| ||||
Sbjct: 331 ataataatagttctaatagtaataataatagtaatagtaa 370


 Score = 30.2 bits (15), Expect = 2.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 460 ccatcattaccatcatcac 478
           ||||||| |||||||||||
Sbjct: 841 ccatcatcaccatcatcac 859


 Score = 30.2 bits (15), Expect = 2.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 123  atagtaatcaattaa 137
            |||||||||||||||
Sbjct: 1051 atagtaatcaattaa 1037


 Score = 30.2 bits (15), Expect = 2.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 180 tgatgatggtgatga 194
           |||||||||||||||
Sbjct: 858 tgatgatggtgatga 844


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,243
Number of Sequences: 6905
Number of extensions: 19243
Number of successful extensions: 3708
Number of sequences better than 10.0: 450
length of query: 612
length of database: 5,674,871
effective HSP length: 16
effective length of query: 596
effective length of database: 5,564,391
effective search space: 3316377036
effective search space used: 3316377036
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.22
Homology vs DNA 
Query= Contig-U02820-1 (Contig-U02820-1Q) /CSM_Contig/Contig-U02820-1Q.Seq.d
         (612 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ344428) Dictyostelium discoideum cDNA clone:dda19c07, 3' ...   747   0.0    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   1e-04  9
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   5e-04  11
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI...    44   0.001  7
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.003  9
(AC210504) Populus trichocarpa clone POP009-B02, complete se...    50   0.005  3
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    34   0.023  9
(CU138553) Zebrafish DNA sequence from clone DKEY-284I7 in l...    52   0.025  1
(AC202363) Medicago truncatula clone mth2-64j15, complete se...    52   0.025  1
(AC165439) Medicago truncatula clone mth2-146b13, complete s...    52   0.025  1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    30   0.052  10
(AL844507) Plasmodium falciparum chromosome 8.                     34   0.053  14
(AL035476) Plasmodium falciparum MAL4P3.                           32   0.056  9
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    40   0.060  11
(AC114199) Rattus norvegicus clone CH230-213M12, *** SEQUENC...    38   0.061  2
(AC113744) Rattus norvegicus clone CH230-181H6, WORKING DRAF...    38   0.061  2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   0.067  9
(CK413382) AUF_IpGil_05_b10 Ictalurus punctatus gill cDNA li...    34   0.078  2
(FH435838) CHO_OF4992xg15r1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   0.078  2
(CU929327) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.093  2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   0.094  16
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    32   0.097  11
(AC216451) Populus trichocarpa clone POP015-O07, complete se...    50   0.10   1
(AL157812) Human DNA sequence from clone RP11-14B2 on chromo...    50   0.10   1
(AC008023) Homo sapiens clone RP11-45D2, WORKING DRAFT SEQUE...    50   0.10   1
(AL280883) Tetraodon nigroviridis genome survey sequence T7 ...    50   0.10   1
(EX162162) MW_DP0086 Dermatophagoides pteronyssinus cDNA lib...    50   0.10   1
(CT583647) Zebrafish DNA sequence from clone CH211-145J4 in ...    38   0.11   6
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.11   10
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    42   0.11   13
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    42   0.11   13
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    38   0.14   6
(ET446013) fcg2x.pk163.g4 C. graminicola genomic sequence Gl...    40   0.17   2
(CR494187) mth2-143B22RM1 BAC end, cultivar Jemalong A17 of ...    46   0.18   2
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255...    38   0.19   4
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    34   0.20   9
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    38   0.21   8
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   0.21   8
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.22   11
(AC216351) Zea mays chromosome 3 clone CH201-197M17; ZMMBBc0...    34   0.23   2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.23   7
(AC184064) Populus trichocarpa clone Pop1-109C22, complete s...    38   0.24   2
(CG944088) MBEMU03TF mth2 Medicago truncatula genomic clone ...    46   0.24   2
(AC201298) Strongylocentrotus purpuratus clone R3-16H4, WORK...    44   0.27   6
(CT033820) Zebrafish DNA sequence from clone CH211-197K14 in...    38   0.29   7
(AZ691411) ENTJV11TF Entamoeba histolytica Sheared DNA Entam...    38   0.29   2
(CW017386) ZMMBLc0010E15.f ZMMBLc Zea mays genomic clone ZMM...    34   0.29   2
(CW016156) ZMMBLc0008K01.f ZMMBLc Zea mays genomic clone ZMM...    34   0.30   2
(EU166598) HIV-1 isolate ZM229M_SGA_D22 from Zambia envelope...    48   0.40   1
(AL606745) Mouse DNA sequence from clone RP23-32L6 on chromo...    48   0.40   1
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    38   0.42   8
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   0.43   10
(AL034557) Plasmodium falciparum MAL4P1.                           34   0.44   10
(AB267275) Rhagophthalmus ohbai mitochondrial DNA, complete ...    32   0.46   6
(AJ235271) Rickettsia prowazekii strain Madrid E, complete g...    30   0.48   11
(AM433437) Vitis vinifera contig VV78X043645.2, whole genome...    40   0.50   2
(FP102295) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.57   4
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    30   0.61   18
(ET583276) fcg3x.234050g07.f C. graminicola genomic sequence...    40   0.69   2
(AC184602) Strongylocentrotus purpuratus clone R3-3093C3, WO...    36   0.71   6
(ET606292) fcg3x.226450d23.f C. graminicola genomic sequence...    40   0.72   2
(EY576169) CAWU14338.rev CAWU Capitella sp. I ECS-2004 Prima...    32   0.73   3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   0.75   12
(AC009525) Arabidopsis thaliana chromosome I BAC F22D16 geno...    38   0.77   5
(BX571705) Zebrafish DNA sequence from clone DKEY-261E22 in ...    36   0.85   2
(AC184563) Strongylocentrotus purpuratus clone R3-3110L10, W...    36   0.86   2
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    30   0.87   7
(CU207241) Zebrafish DNA sequence from clone CH73-205F10 in ...    38   0.89   4
(AC180675) Strongylocentrotus purpuratus clone R3-3087J01, W...    34   0.96   5
(AM466236) Vitis vinifera contig VV78X143636.5, whole genome...    32   0.99   2
(AC176391) Strongylocentrotus purpuratus clone R3-3048D22, W...    36   1.0    6
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    34   1.0    10
(AC217712) Solanum tuberosum chromosome 1 clone RH073F20, **...    36   1.1    4
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    30   1.1    8
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   1.1    6
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   1.1    9
(AC171168) Medicago truncatula chromosome 2 BAC clone mth2-9...    42   1.1    4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   1.2    10
(EJ098240) 1095462300787 Global-Ocean-Sampling_GS-26-01-01-1...    36   1.2    3
(ER363282) 1093018906322 Global-Ocean-Sampling_GS-34-01-01-1...    36   1.3    3
(AM480991) Vitis vinifera contig VV78X019984.3, whole genome...    42   1.4    3
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    40   1.5    8
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    32   1.5    7
(AC126799) Mus musculus BAC clone RP24-388B22 from chromosom...    40   1.6    3
(CU464114) Zebrafish DNA sequence from clone CH211-287I21 in...    46   1.6    1
(CR926457) Zebrafish DNA sequence from clone DKEY-164F21 in ...    46   1.6    1
(BX548073) Zebrafish DNA sequence from clone CH211-207C6 in ...    46   1.6    1
(BX004992) Zebrafish DNA sequence from clone CH211-120E13 in...    46   1.6    1
(AL953844) Zebrafish DNA sequence from clone DKEY-29G23 in l...    46   1.6    1
(BV745670) pRRL2:Newb:20080411:112341 USMARC Pig Breed SNP D...    46   1.6    1
(AC162919) Mus musculus BAC clone RP23-365O8 from chromosome...    46   1.6    1
(AC129291) Mus musculus BAC clone RP24-491O22 from chromosom...    46   1.6    1
(AC122301) Mus musculus BAC clone RP23-276C6 from 10, comple...    46   1.6    1
(AC206451) Pongo abelii BAC clone CH276-180B2 from chromosom...    46   1.6    1
(AC188073) Macaca mulatta chromosome UNK clone CH250-24H12, ...    46   1.6    1
(AP009279) Solanum lycopersicum genomic DNA, chromosome 8, c...    46   1.6    1
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    46   1.6    1
(AY225466) Dictyostelium discoideum InsP6 kinase (I6KA) mRNA...    46   1.6    1
(AM910995) Plasmodium knowlesi strain H chromosome 13, compl...    46   1.6    1
(AC206603) Homo sapiens FOSMID clone ABC9-45366400D20 from c...    46   1.6    1
(AC150842) Medicago truncatula chromosome 8 clone mth2-66f12...    46   1.6    1
(AC068810) Mus musculus strain C57BL6/J chromosome 6 clone R...    46   1.6    1
(CU466498) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.6    1
(CR853288) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.6    1
(AC219431) Bos taurus clone CH240-340B15, WORKING DRAFT SEQU...    46   1.6    1
(EJ072872) 1095458098683 Global-Ocean-Sampling_GS-26-01-01-1...    46   1.6    1
(CT425322) Sus scrofa genomic clone CH242-362B18, genomic su...    46   1.6    1
(CT425321) Sus scrofa genomic clone CH242-362B17, genomic su...    46   1.6    1
(CR309824) mte1-31I7FM1 BAC end, cultivar Jemalong A17 of Me...    46   1.6    1
(AG566664) Mus musculus molossinus DNA, clone:MSMg01-487M13....    46   1.6    1
(CE688416) tigr-gss-dog-17000368533526 Dog Library Canis lup...    46   1.6    1
(AG156284) Pan troglodytes DNA, clone: RP43-020N18.TJ.             46   1.6    1
(AG038960) Pan troglodytes DNA, clone: PTB-015O18.R.               46   1.6    1
(AL034559) Plasmodium falciparum MAL3P7.                           40   1.6    9
(AX458482) Sequence 28 from Patent WO0246454.                      36   1.6    4
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    44   1.6    8
(CR940352) Theileria annulata genomic DNA chromosome 3.            34   1.6    17
(AM433948) Vitis vinifera contig VV78X035184.4, whole genome...    38   1.6    3
(AQ702351) HS_5431_A1_D01_T7A RPCI-11 Human Male BAC Library...    36   1.8    2
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   1.8    11
(AE017308) Mycoplasma mobile 163K complete genome.                 38   1.9    11
(EA692048) Sequence 70927 from patent US 7365185.                  38   1.9    4
(AI741290) wg08g12.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie...    40   2.0    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   2.1    14
(AC153417) Mus musculus BAC clone RP24-169H4 from 9, complet...    42   2.1    2
(AC170605) Mus musculus chromosome 16 clone RP23-104C2, WORK...    40   2.2    5
(BX247872) Zebrafish DNA sequence from clone CH211-223M9.          36   2.2    5
(BZ780846) ii20h11.g1 WGS-SbicolorF (DH5a methyl filtered) S...    40   2.2    2
(AJ400814) Dictyostelium discoideum srfA gene, alternative p...    32   2.3    4
(AC174325) Medicago truncatula chromosome 8 clone mth2-16p19...    38   2.5    4
(CU929103) Zebrafish DNA sequence from clone CH73-78P21 in l...    44   2.5    5
(CU457480) Mouse DNA sequence from clone DN-232J23 on chromo...    34   2.5    5
(EI885115) CAH1-69F10TR CAA1Ba Cicer arietinum genomic clone...    34   2.8    3
(U65488) Papilio polyxenes furnocoumarin-inducible cytochrom...    44   2.8    2
(CD168396) MM1-0019T-R031-G03-U.G MM1-0019 Schistosoma manso...    40   2.8    2
(AX346152) Sequence 1223 from Patent WO0200928.                    38   3.0    3
(AC124036) Mus Musculus Strain C57BL6/J chromosome 11 BAC Cl...    32   3.0    2
(AL954822) Zebrafish DNA sequence from clone CH211-222M15 in...    32   3.0    2
(AL603711) Mouse DNA sequence from clone RP23-381B19 on chro...    32   3.0    2
(AC178118) Strongylocentrotus purpuratus clone R3-3074I12, W...    36   3.0    2
(AC176005) Strongylocentrotus purpuratus clone R3-17M12, WOR...    34   3.0    2
(AL713883) Mus musculus chromosome 11 region in the Om locus...    32   3.1    2
(AC177745) Strongylocentrotus purpuratus clone R3-1008C13, W...    34   3.1    2
(AC179281) Strongylocentrotus purpuratus clone R3-45F13, WOR...    42   3.2    5
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    36   3.2    8
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    32   3.2    10
(AY648941) Vasdavidius concursus cytochrome oxidase subunit ...    34   3.3    4
(CW030813) 104_259_10500441_114_30397 Sorghum methylation fi...    42   3.3    2
(AC179979) Strongylocentrotus purpuratus clone R3-19H03, WOR...    38   3.4    4
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    44   3.4    6
(CR339058) Zebrafish DNA sequence from clone CH211-135H16 in...    34   3.5    6
(ED364142) AUAC-aak57c04.b1 Ascaris suum whole genome shotgu...    32   3.5    3
(AJ277590) Dictyostelium discoideum iplA gene for inositol 1...    42   3.6    3
(AC174248) Strongylocentrotus purpuratus clone R3-16B16, WOR...    40   3.6    3
(CT768239) Paramecium tetraurelia 5-PRIME EST from clone LK0...    34   3.8    2
(CR932000) Zebrafish DNA sequence from clone DKEYP-97E7 in l...    44   3.8    2
(ED174073) AUAC-aar11a06.g1 Ascaris suum whole genome shotgu...    34   4.1    2
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ...    32   4.3    9
(CP000192) Drosophila melanogaster genomic scaffold 21100002...    38   4.4    6
(AC147649) Homo sapiens BAC clone RP11-188B11 from UL, compl...    34   4.5    4
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    40   4.6    8
(AC201610) Strongylocentrotus purpuratus clone R3-60E5, WORK...    40   4.6    5
(AC112664) Mus musculus clone RP23-372H3, WORKING DRAFT SEQU...    38   4.7    5
(AC179664) Strongylocentrotus purpuratus clone R3-1024D06, W...    34   4.7    7
(AC162602) Bos taurus clone CH240-112C24, WORKING DRAFT SEQU...    36   4.8    5
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    36   4.8    17
(CT971500) Zebrafish DNA sequence from clone CH73-205C8 in l...    38   4.8    2
(AC148030) Homo sapiens chromosome UNKNOWN clone RP11-134K23...    34   5.0    4
(AM464669) Vitis vinifera contig VV78X108814.2, whole genome...    32   5.0    3
(BX510941) Zebrafish DNA sequence from clone DKEY-155D18 in ...    38   5.2    5
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431...    36   5.2    3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    32   5.3    8
(AC179608) Strongylocentrotus purpuratus clone R3-1028N09, W...    40   5.4    5
(AC112493) Homo sapiens X BAC RP11-2M5 (Roswell Park Cancer ...    32   5.4    7
(AL928933) Mouse DNA sequence from clone RP23-419H6 on chrom...    38   5.4    3
(BZ515724) BOMQO51TR BO_2_3_KB Brassica oleracea genomic clo...    38   5.5    2
(CR293504) Zebrafish DNA sequence from clone CH211-147G3 in ...    38   5.6    4
(EC079635) 7563 CK01 Drosophila melanogaster cDNA clone CK01...    34   5.6    2
(AL805967) Mouse DNA sequence from clone RP23-450K9 on chrom...    38   5.8    5
(CO196217) EK002041.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    34   5.8    2
(AC209031) Populus trichocarpa clone ACSB1349-F06, complete ...    44   5.8    2
(EC079636) 7564 CK01 Drosophila melanogaster cDNA clone CK01...    34   5.8    2
(CO294450) EK206953.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    34   5.8    2
(AC184595) Strongylocentrotus purpuratus clone R3-3110B2, WO...    34   5.8    6
(EC075410) 325719 CK01 Drosophila melanogaster cDNA clone 76...    34   5.9    2
(AM438029) Vitis vinifera contig VV78X002067.32, whole genom...    34   5.9    3
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    38   5.9    7
(CQ579977) Sequence 7735 from Patent WO0171042.                    40   6.0    3
(BB818149) Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-l...    34   6.0    2
(AB050723) Streptococcus agalactiae cpsIbD, cpsIbF, cpsIbG, ...    34   6.1    3
(CU638702) Zebrafish DNA sequence from clone CH1073-317D10 i...    44   6.2    1
(CR847575) Zebrafish DNA sequence from clone CH211-282M9 in ...    44   6.2    1
(CR394562) Zebrafish DNA sequence from clone CH211-284D14 in...    44   6.2    1
(BX469911) Zebrafish DNA sequence from clone DKEY-13K9 in li...    44   6.2    1
(CT009635) Mouse DNA sequence from clone RP23-109E18 on chro...    44   6.2    1
(AC133959) Mus musculus BAC clone RP23-377P18 from 15, compl...    44   6.2    1
(AM461388) Vitis vinifera contig VV78X124136.5, whole genome...    44   6.2    1
(AC166744) Medicago truncatula chromosome 6 clone mth2-69h7,...    44   6.2    1
(CS789895) Sequence 1151 from Patent WO2005031001.                 44   6.2    1
(CS789884) Sequence 1140 from Patent WO2005031001.                 44   6.2    1
(AX345190) Sequence 261 from Patent WO0200928.                     44   6.2    1
(AC092115) Homo sapiens chromosome 16 clone CTD-2033A16, com...    44   6.2    1
(AC073951) Homo sapiens BAC clone RP11-38H6 from 2, complete...    44   6.2    1
(AC034235) Homo sapiens chromosome 5 clone CTD-2262B2, compl...    44   6.2    1
(AC016394) Homo sapiens chromosome 10 clone RP11-152N13, com...    44   6.2    1
(AC114304) Homo sapiens chromosome 5 clone RP11-18M15, WORKI...    44   6.2    1
(AC099435) Rattus norvegicus clone CH230-97E3, *** SEQUENCIN...    44   6.2    1
(AC095909) Rattus norvegicus clone CH230-10M4, *** SEQUENCIN...    44   6.2    1
(CU929533) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(CU855765) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(AC079516) Mus musculus clone RP23-298O16, WORKING DRAFT SEQ...    44   6.2    1
(CT737204) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(BX324214) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(AC220896) Bos taurus clone CH240-342A18, WORKING DRAFT SEQU...    44   6.2    1
(AC199684) Ornithorhynchus anatinus clone OA_Bb-495G21, WORK...    44   6.2    1
(AC180404) Strongylocentrotus purpuratus clone R3-3111M16, W...    44   6.2    1
(AC175396) Bos taurus clone CH240-207F2, WORKING DRAFT SEQUE...    44   6.2    1
(AC173782) Bos taurus clone CH240-217M2, WORKING DRAFT SEQUE...    44   6.2    1
(AC169922) Macaca mulatta clone CH250-279B2, *** SEQUENCING ...    44   6.2    1
(AC011986) Homo sapiens clone RP11-18M15, WORKING DRAFT SEQU...    44   6.2    1
(AQ638307) 927P1-21B4.TP 927P1 Trypanosoma brucei genomic cl...    44   6.2    1
(FH982718) CHO_OF6831xf20r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.2    1
(FH982330) CHO_OF6831xe21r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.2    1
(FH901688) CHO_ONF081xk23f1.ab1 CHO_ONF Nicotiana tabacum ge...    44   6.2    1
(FH089197) CHO_OF3034xb14f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   6.2    1
(ET739280) CHO_OF854xe01f1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.2    1
(EK082208) 1092961112343 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EJ804493) 1093017450921 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.2    1
(EJ116877) 1092343357028 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.2    1
(DX930957) MUGQ_CH252P083O17T7_CP63_065 CHORI-252 Vervet Mon...    44   6.2    1
(CZ108252) OM__Ba0119A22.f OM__Ba Oryza minuta genomic clone...    44   6.2    1
(CW449323) fsbb001f183g16k0 Sorghum methylation filtered lib...    44   6.2    1
(CL564085) OB__Ba0027G17.f OB__Ba Oryza brachyantha genomic ...    44   6.2    1
(DW282483) UI-S-HH0-adj-j-11-0-UI.s1 UI-S-HH0 Euprymna scolo...    44   6.2    1
(DW272081) UI-S-GS1-acp-j-15-0-UI.s1 UI-S-GS1 Euprymna scolo...    44   6.2    1
(DV085997) 327-384-18_I18_KS Nematostella vectensis normaliz...    44   6.2    1
(DC234647) Plasmodium berghei strain ANKA cDNA clone:SG03102...    44   6.2    1
(DC230120) Plasmodium berghei strain ANKA cDNA clone:SG01771...    44   6.2    1
(DC229495) Plasmodium berghei strain ANKA cDNA clone:SG01565...    44   6.2    1
(DC226934) Plasmodium berghei strain ANKA cDNA clone:SG00744...    44   6.2    1
(DC226042) Plasmodium berghei strain ANKA cDNA clone:SG00453...    44   6.2    1
(DC221722) Plasmodium berghei strain ANKA cDNA clone:MZ00471...    44   6.2    1
(DB911735) Idiosepius paradoxus cDNA, clone:Ip_aB_003_D14, 5...    44   6.2    1
(CD147606) ML1-0007T-V110-D06-U.B ML1-0007 Schistosoma manso...    44   6.2    1
(BW404170) Ciona intestinalis cDNA, clone:ciem844j10, 3'end,...    44   6.2    1
(BW106515) Ciona intestinalis cDNA, clone:rcicl038j21, 3' en...    44   6.2    1
(BW043840) Ciona intestinalis cDNA, clone:cibd053n09, 5' end...    44   6.2    1
(BW015688) Ciona intestinalis cDNA, clone:rcibd053n09, 3' en...    44   6.2    1
(AI390084) MA000176.FGR Adult worm cDNA expression library S...    44   6.2    1
(BM163516) EST566039 PyBS Plasmodium yoelii yoelii cDNA clon...    44   6.2    1
(BM163086) EST565609 PyBS Plasmodium yoelii yoelii cDNA clon...    44   6.2    1
(BM161558) EST564081 PyBS Plasmodium yoelii yoelii cDNA clon...    44   6.2    1
(FK102754) XABT150052.g1 Gateway compatible cien cDNA librar...    44   6.2    1
(FG607065) stem_S018_D04.SEQ Opium poppy stem cDNA library P...    44   6.2    1
(FF851528) CBWU2904.g1 Yutaka Satou unpublished cDNA library...    44   6.2    1
(FE086723) LV_GL_RA32B11f Litopenaeus vannamei gills cDNA li...    44   6.2    1
(FC204264) CAAD9812.fwd CAAD Nematostella vectensis nemve_P1...    44   6.2    1
(AV891431) Ciona intestinalis cDNA, clone:rcilv33k04, 3' end...    44   6.2    1
(EU807154) Uncultured soil fungus clone 2_L_F09 18S ribosoma...    44   6.2    1
(EU807152) Uncultured soil fungus clone 2_L_B01 18S ribosoma...    44   6.2    1
(EU807151) Uncultured soil fungus clone 4_C_H09 18S ribosoma...    44   6.2    1
(EU807150) Uncultured soil fungus clone 4_C_H08 18S ribosoma...    44   6.2    1
(EU807149) Uncultured soil fungus clone 4_C_H05 18S ribosoma...    44   6.2    1
(EU807148) Uncultured soil fungus clone 4_C_G11 18S ribosoma...    44   6.2    1
(EU807147) Uncultured soil fungus clone 4_C_G07 18S ribosoma...    44   6.2    1
(EU807146) Uncultured soil fungus clone 4_C_G06 18S ribosoma...    44   6.2    1
(EU807145) Uncultured soil fungus clone 4_C_F10 18S ribosoma...    44   6.2    1
(EU807144) Uncultured soil fungus clone 4_C_F06 18S ribosoma...    44   6.2    1
(EU807143) Uncultured soil fungus clone 4_C_E04 18S ribosoma...    44   6.2    1
(EU807142) Uncultured soil fungus clone 4_C_D09 18S ribosoma...    44   6.2    1
(EU807141) Uncultured soil fungus clone 4_C_D06 18S ribosoma...    44   6.2    1
(EU807140) Uncultured soil fungus clone 4_C_D01 18S ribosoma...    44   6.2    1
(EU807139) Uncultured soil fungus clone 4_C_C11 18S ribosoma...    44   6.2    1
(EU807138) Uncultured soil fungus clone 4_C_C09 18S ribosoma...    44   6.2    1
(EU807137) Uncultured soil fungus clone 4_C_C08 18S ribosoma...    44   6.2    1
(EU807136) Uncultured soil fungus clone 4_C_C04 18S ribosoma...    44   6.2    1
(EU807135) Uncultured soil fungus clone 4_C_C01 18S ribosoma...    44   6.2    1
(EU807134) Uncultured soil fungus clone 4_C_B12 18S ribosoma...    44   6.2    1
(EU807133) Uncultured soil fungus clone 4_C_A11 18S ribosoma...    44   6.2    1
(EU807132) Uncultured soil fungus clone 4_C_A04 18S ribosoma...    44   6.2    1
(EU807131) Uncultured soil fungus clone 4_C_G02 18S ribosoma...    44   6.2    1
(EU807130) Uncultured soil fungus clone 4_C_H06 18S ribosoma...    44   6.2    1
(EU807129) Uncultured soil fungus clone 4_C_E01 18S ribosoma...    44   6.2    1
(CP000383) Cytophaga hutchinsonii ATCC 33406, complete genome.     44   6.2    1
(AC019292) Homo sapiens, clone RP11-23J14, complete sequence.      36   6.3    3
(AC025039) Homo sapiens chromosome 10 clone RP11-457M15, com...    38   6.3    6
(BY515941) Mus musculus bone marrow macrophage cDNA, RIKEN f...    34   6.4    2
(AL772149) Mouse DNA sequence from clone RP23-108H7 on chrom...    38   6.4    5
(CT956030) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   6.5    4
(CO284730) EK166639.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    34   6.5    2
(CU463243) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.5    6
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    30   6.5    9
(DQ073916) Adoxophyes honmai mitochondrion, complete genome.       32   6.6    5
(AC151833) Mus musculus BAC clone RP23-374P15 from 14, compl...    40   6.6    5
(EC067029) 424824 CK01 Drosophila melanogaster cDNA clone 17...    34   6.6    2
(CO274520) EK114331.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    34   6.6    2
(CU570823) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.6    6
(EX626147) 255438015 Pea aphid whole body normalized full le...    34   6.7    3
(EC060571) 151506 CK01 Drosophila melanogaster cDNA clone 12...    34   6.8    2
(CU915606) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.8    3
(AX344680) Sequence 105 from Patent WO0200927.                     32   6.9    4
(DQ888607) Rhagophthalmus lufengensis mitochondrion, complet...    32   7.0    5
(AI520337) LD40469.5prime LD Drosophila melanogaster embryo ...    34   7.0    2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    32   7.1    9
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   7.2    8
(AC164315) Mus musculus BAC clone RP23-18J12 from chromosome...    40   7.2    3
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    34   7.4    13
(CP001205) Borrelia burgdorferi ZS7, complete genome.              34   7.6    12
(AC182654) Populus trichocarpa clone Pop1-121D13, complete s...    36   7.7    5
(AE000783) Borrelia burgdorferi B31, complete genome.              34   7.9    12
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         34   7.9    10
(BJ416115) Dictyostelium discoideum cDNA clone:ddv25b06, 5' ...    34   8.1    2
(AC022316) Homo sapiens chromosome 11 clone RP11-46D24, comp...    34   8.3    7
(AL096782) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    38   8.3    7
(BJ415768) Dictyostelium discoideum cDNA clone:ddv23l18, 5' ...    34   8.4    2
(AC007587) Drosophila melanogaster clone BACR02D22, complete...    32   8.4    6
(AI295833) LP09585.5prime LP Drosophila melanogaster larval-...    34   8.4    2
(BX248583) Blochmannia floridanus complete genome.                 34   8.4    13
(AI296280) LP10136.5prime LP Drosophila melanogaster larval-...    34   8.5    2
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    32   8.6    10
(AM459710) Vitis vinifera contig VV78X064134.4, whole genome...    36   8.6    4
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34...    32   8.8    8
(AA942283) LD26392.5prime LD Drosophila melanogaster embryo ...    34   8.8    2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   8.9    5
(AC217497) Solanum lycopersicum chromosome 7 clone C07HBa016...    36   8.9    5
(AC217469) Nomascus leucogenys leucogenys clone CH271-212F7,...    38   9.0    5
(AI455959) LD35703.5prime LD Drosophila melanogaster embryo ...    34   9.0    2
(BI641412) SD24730.5prime SD Drosophila melanogaster Schneid...    34   9.1    2
(AX346147) Sequence 1218 from Patent WO0200928.                    36   9.1    3
(AC172861) Brassica rapa subsp. pekinensis clone KBrB044C04,...    38   9.1    4
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    30   9.2    6
(BI632562) SD26373.5prime SD Drosophila melanogaster Schneid...    34   9.4    2
(CR450774) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    32   9.5    8
(AC184201) Strongylocentrotus purpuratus clone R3-32L14, WOR...    32   9.7    6
(BX000479) Mouse DNA sequence from clone RP23-139I16 on chro...    34   9.8    6
(BI639575) SD22202.5prime SD Drosophila melanogaster Schneid...    34   9.9    2
(BX957280) Zebrafish DNA sequence from clone DKEY-265G1 in l...    38   9.9    4
(AY376688) Crinipellis perniciosa mitochondrion, complete ge...    36   10.0   6

>(BJ344428) Dictyostelium discoideum cDNA clone:dda19c07, 3' end,
           single read.
          Length = 613

 Score =  747 bits (377), Expect(2) = 0.0
 Identities = 380/380 (100%)
 Strand = Plus / Minus


Query: 233 tatcaaattattcattatattcagtaatcattcatagtggtagatcaccaactcatggtc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcaaattattcattatattcagtaatcattcatagtggtagatcaccaactcatggtc 322


Query: 293 attattataattatagttgtactagtagtaataatagtaatggtaaaccagtggattggt 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attattataattatagttgtactagtagtaataatagtaatggtaaaccagtggattggt 262


Query: 353 gtctctttaatgattcaatggtaaagataactgatgttcaaacttttaaaaatattaaca 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctctttaatgattcaatggtaaagataactgatgttcaaacttttaaaaatattaaca 202


Query: 413 aacaattctataccgatgtgccctatattttattttatgttaaaaatccatcattaccat 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaattctataccgatgtgccctatattttattttatgttaaaaatccatcattaccat 142


Query: 473 catcacctattgataatactattgatactactaataatgangatgtatctccatggataa 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 catcacctattgataatactattgatactactaataatgangatgtatctccatggataa 82


Query: 533 aacaatcaattattaaagagaatcaaaatttattaagtaatttataactaaaataagaat 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  aacaatcaattattaaagagaatcaaaatttattaagtaatttataactaaaataagaat 22


Query: 593 tctaaattcggaacaatttc 612
           ||||||||||||||||||||
Sbjct: 21  tctaaattcggaacaatttc 2

 Score =  333 bits (168), Expect(2) = 0.0
 Identities = 168/168 (100%)
 Strand = Plus / Minus


Query: 1   tatatcaatgttattagtaaagataattattgatgatttatcaacattaccaattacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tatatcaatgttattagtaaagataattattgatgatttatcaacattaccaattacaat 554


Query: 61  ggaaccaaaacaatatgatgaaattgtatatcaatatacaaaaactattcaattattttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggaaccaaaacaatatgatgaaattgtatatcaatatacaaaaactattcaattattttg 494


Query: 121 gaatagtaatcaattaagttctattcaagtttcaatggaacatatgtt 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaatagtaatcaattaagttctattcaagtttcaatggaacatatgtt 446

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 781,838,492
Number of extensions: 53460969
Number of successful extensions: 5609463
Number of sequences better than 10.0: 341
Length of query: 612
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 589
Effective length of database: 99,442,330,388
Effective search space: 58571532598532
Effective search space used: 58571532598532
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.21
Homology vs Protein 
Query= Contig-U02820-1 (Contig-U02820-1Q) /CSM_Contig/Contig-U02820-1Q.Seq.d
         (612 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC081036_1(BC081036|pid:none) Xenopus laevis MGC81730 protein, m...    40   0.069
AB385457_1(AB385457|pid:none) Synthetic construct DNA, clone: pF...    39   0.12
AC121489_20(AC121489|pid:none) Oryza sativa (japonica cultivar-g...    39   0.12
AF327414_1(AF327414|pid:none) Aspergillus nidulans CREB (creB) g...    39   0.12
AK301048_1(AK301048|pid:none) Homo sapiens cDNA FLJ51334 complet...    39   0.15
AP007150_271(AP007150|pid:none) Aspergillus oryzae RIB40 genomic...    39   0.15
BC131489_1(BC131489|pid:none) Homo sapiens ubiquitin specific pe...    39   0.15
AK091712_1(AK091712|pid:none) Homo sapiens cDNA FLJ34393 fis, cl...    38   0.20
AB067478_1(AB067478|pid:none) Homo sapiens mRNA for KIAA1891 pro...    38   0.20
CU633438_423(CU633438|pid:none) Podospora anserina genomic DNA c...    38   0.26
AK052219_1(AK052219|pid:none) Mus musculus 13 days embryo heart ...    37   0.34
BT040660_1(BT040660|pid:none) Zea mays full-length cDNA clone ZM...    37   0.34
AK054116_1(AK054116|pid:none) Mus musculus 2 days pregnant adult...    37   0.34
BC148040_1(BC148040|pid:none) Bos taurus ubiquitin specific pept...    37   0.45
AK057992_1(AK057992|pid:none) Homo sapiens cDNA FLJ25263 fis, cl...    37   0.58
BC057482_1(BC057482|pid:none) Danio rerio ubiquitin specific pep...    36   0.76
BC047168_1(BC047168|pid:none) Danio rerio ubiquitin specific pep...    36   0.76
AM434540_1(AM434540|pid:none) Vitis vinifera contig VV78X210461....    36   0.99
AL844501_43(AL844501|pid:none) Plasmodium falciparum strain 3D7,...    35   1.3
AC104496_1(AC104496|pid:none) Trypanosoma cruzi strain CL Brener...    35   2.2
(Q8LAM0) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ...    35   2.2
BT056040_1(BT056040|pid:none) Zea mays full-length cDNA clone ZM...    34   2.9
AL606615_26(AL606615|pid:none) Oryza sativa genomic DNA, chromos...    34   2.9
EF100425_1(EF100425|pid:none) Plasmodium chabaudi strain AS-ATN ...    33   4.9
AJ720494_1(AJ720494|pid:none) Gallus gallus mRNA for hypothetica...    33   4.9
EF100422_1(EF100422|pid:none) Plasmodium chabaudi strain AS-30CQ...    33   4.9
(Q569C3) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 1; ...    33   6.4
AB384215_1(AB384215|pid:none) Synthetic construct DNA, clone: pF...    33   6.4
BC071582_1(BC071582|pid:none) Homo sapiens ubiquitin specific pe...    33   6.4
BC020007_1(BC020007|pid:none) Mus musculus ubiquitin specific pe...    33   6.4
AX107033_1(AX107033|pid:none) Sequence 2 from Patent WO0123585.        33   6.4
BC027992_1(BC027992|pid:none) Homo sapiens ubiquitin specific pe...    33   6.4
AB208893_1(AB208893|pid:none) Homo sapiens mRNA for ubiquitin sp...    33   6.4
AB040886_1(AB040886|pid:none) Homo sapiens mRNA for KIAA1453 pro...    33   6.4
AK022913_1(AK022913|pid:none) Homo sapiens cDNA FLJ12851 fis, cl...    33   6.4
BC016487_1(BC016487|pid:none) Homo sapiens ubiquitin specific pe...    33   6.4
AK312423_1(AK312423|pid:none) Homo sapiens cDNA, FLJ92762, highl...    33   6.4
(Q8BJQ2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 1; ...    33   6.4
BC018179_1(BC018179|pid:none) Mus musculus ubiquitin specific pe...    33   6.4
AF117386_1(AF117386|pid:none) Homo sapiens ubiquitin-specific pr...    33   6.4
AK001671_1(AK001671|pid:none) Homo sapiens cDNA FLJ10809 fis, cl...    33   6.4
(Q29RP1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 1; ...    33   6.4
AK022840_1(AK022840|pid:none) Homo sapiens cDNA FLJ12778 fis, cl...    33   6.4
AL591404_3(AL591404|pid:none) Mouse DNA sequence from clone RP23...    33   6.4
BC081032_1(BC081032|pid:none) Xenopus laevis MGC81700 protein, m...    33   8.4

>BC081036_1(BC081036|pid:none) Xenopus laevis MGC81730 protein, mRNA
            (cDNA clone MGC:81730 IMAGE:6865361), complete cds.
          Length = 1037

 Score = 39.7 bits (91), Expect = 0.069
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 346  DWCLFNDSMVKITDVQTFKNINKQFYTDVPYILFYVKN 459
            DW LFNDS V  T  Q+  NI  +F  D  Y+L Y K+
Sbjct: 906  DWFLFNDSRVTFTSFQSVFNITSRFPKDTAYVLIYRKH 943

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 698,512,629
Number of extensions: 10534687
Number of successful extensions: 17347
Number of sequences better than 10.0: 45
Number of HSP's gapped: 17304
Number of HSP's successfully gapped: 45
Length of query: 204
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 82
Effective length of database: 656,320,666
Effective search space: 53818294612
Effective search space used: 53818294612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U02820-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0