Contig-U14754-1 |
Contig ID |
Contig-U14754-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
570 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
1627945 |
End point |
1628506 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U14754 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.30 |
Homology vs DNA |
Query= Contig-U14754-1 (Contig-U14754-1Q) /CSM_Contig/Contig-U14754-1Q.Seq.d (570 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ436538) Dictyostelium discoideum cDNA clone:ddv31p12, 3' ... 1074 0.0 1 (CT009638) Zebrafish DNA sequence from clone CH73-162A18 in ... 46 0.010 4 (AC161223) Mus musculus chromosome 3, clone RP24-173A7, comp... 50 0.087 1 (AC114665) Mus musculus chromosome 3 clone RP24-173A7 map 3,... 50 0.087 1 (AC114664) Mus musculus chromosome 3 clone RP24-173F24 map 3... 50 0.087 1 (AC198285) Spermophilus tridecemlineatus clone VMRC20-643K14... 48 0.13 3 (ER507717) 1093015428752 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.34 1 (ER461549) 1092963897735 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.34 1 (ER356940) 1092351152114 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.34 1 (ER354148) 1092351008594 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.34 1 (ER315459) 1092344138307 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.34 1 (EK553872) 1095516145010 Global-Ocean-Sampling_GS-32-01-01-1... 48 0.34 1 (EK462104) 1095469396310 Global-Ocean-Sampling_GS-32-01-01-1... 48 0.34 1 (EK058784) 1092960054861 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.34 1 (EJ763702) 1092963160357 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.34 1 (EJ750633) 1092963032298 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.34 1 (EJ736487) 1092961169833 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.34 1 (EJ683047) 1092955146492 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.34 1 (EJ623737) 1092963115484 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.34 1 (EJ621521) 1092963073849 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.34 1 (EJ441948) 1093015308171 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.34 1 (EJ214989) 1092351056426 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.34 1 (BH958076) odf85c03.g1 B.oleracea002 Brassica oleracea genom... 48 0.34 1 (ES587744) Hm_pwAE2_44H04_M13rev Amplicon Express mixed pupa... 44 0.44 2 (CO729505) Hm_pupb_01D06_pBACe3.6_t7 Heliconius melpomene pu... 44 0.48 2 (ES586711) Hm_pwAE2_31G04_M13rev Amplicon Express mixed pupa... 44 0.48 2 (CX700726) Hm_L6w_05D11_T7seq Heliconius melpomene late 5th ... 44 0.50 2 (CO729570) Hm_pupb_03C04_pBACe3.6_t7 Heliconius melpomene pu... 44 0.52 2 (ES584737) Hm_pwAE2_04E08_M13rev Amplicon Express mixed pupa... 44 0.53 2 (ES584678) Hm_pwAE2_03H04_M13rev Amplicon Express mixed pupa... 44 0.55 2 (EE743396) Hm_pwAE2_02H04_T3 Heliconius melpomene prepupal a... 44 0.56 2 (CO729561) Hm_pupb_03B03_pBACe3.6_t7 Heliconius melpomene pu... 44 0.60 2 (CO729549) Hm_pupb_01H09_pBACe3.6_t7 Heliconius melpomene pu... 44 0.61 2 (FH387560) CHO_OF4763xc11f1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 0.67 3 (CR847522) Zebrafish DNA sequence from clone CH211-165A18 in... 46 1.4 1 (EF545123) Tribolium castaneum glutamate-gated chloride chan... 46 1.4 1 (EF545122) Tribolium castaneum glutamate-gated chloride chan... 46 1.4 1 (EF545121) Tribolium castaneum glutamate-gated chloride chan... 46 1.4 1 (AC136549) Rattus norvegicus clone CH230-179L13, *** SEQUENC... 46 1.4 1 (AC132992) Rattus norvegicus clone CH230-97I7, *** SEQUENCIN... 46 1.4 1 (CU466376) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1 (ER563328) 1093015757042 Global-Ocean-Sampling_GS-36-01-01-2... 46 1.4 1 (EI379413) POTDP32TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 1.4 1 (DV418746) NADYT50TF Aedes aegypti infected with Dengue viru... 46 1.4 1 (DV360969) NACAE24TFB Aedes aegypti infected with Brugia Mal... 46 1.4 1 (DV264454) AEDAA21TF Aedes re-sequencing Aedes aegypti cDNA ... 46 1.4 1 (BX005392) Zebrafish DNA sequence from clone DKEY-117J14 in ... 32 1.7 7 (ES225409) MpSG_ag3_A13 Myzus persicae, tobacco lineage, aph... 36 1.9 2 (EJ856122) 1093017941350 Global-Ocean-Sampling_GS-30-02-01-1... 42 2.4 2 (EJ853456) 1093017903201 Global-Ocean-Sampling_GS-30-02-01-1... 42 2.5 2 (EJ190962) 1092344196395 Global-Ocean-Sampling_GS-27-01-01-1... 38 2.5 2 (AC163119) Bos taurus clone CH240-124M24, WORKING DRAFT SEQU... 32 2.6 2 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 2.9 7 (DE531785) Bombyx mori genomic DNA, Fosmid clone:GBMFno155_l... 34 3.6 2 (AM489356) Vitis vinifera contig VV78X096721.4, whole genome... 44 3.9 2 (AC008706) Homo sapiens chromosome 5 clone CTB-77M23, comple... 44 3.9 3 (AC231065) Bos taurus clone CH240-491N10, WORKING DRAFT SEQU... 42 3.9 3 (CR388057) Zebrafish DNA sequence from clone DKEYP-28G3 in l... 40 4.5 2 (AP006401) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 5.4 1 (AY445658) Antheraea pernyi diapause hormone-phermone biosyn... 44 5.4 1 (AC068657) Homo sapiens chromosome 5 clone CTB-67I13, comple... 44 5.4 1 (AC022407) Homo sapiens chromosome 15 clone RP11-105D1 map 1... 44 5.4 1 (AC021752) Homo sapiens chromosome 15 clone CTD-2378E12 map ... 44 5.4 1 (AC141994) Rattus norvegicus clone CH230-291C16, *** SEQUENC... 44 5.4 1 (CU606931) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.4 1 (CU606888) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.4 1 (AC036168) Homo sapiens chromosome 15 clone RP11-623I18 map ... 44 5.4 1 (AP009989) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 5.4 1 (AC169061) Bos taurus clone CH240-232M13, WORKING DRAFT SEQU... 44 5.4 1 (AZ671062) ENTJF41TF Entamoeba histolytica Sheared DNA Entam... 44 5.4 1 (ET352199) S0207D05_T7 CHORI-214 Salmo salar genomic clone S... 44 5.4 1 (EK582741) 1095522004169 Global-Ocean-Sampling_GS-32-01-01-1... 44 5.4 1 (EK269571) 1095462249720 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1 (EK200802) 1095460055943 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1 (AM675027) Entamoeba terrapinae GSS, clone terra004h05.q1k. 44 5.4 1 (EJ815447) 1093017512913 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.4 1 (EJ069463) 1095458072709 Global-Ocean-Sampling_GS-26-01-01-1... 44 5.4 1 (CU777672) A BAC library has been constructed from PN40024 g... 44 5.4 1 (CU759774) A BAC library has been constructed from PN40024 g... 44 5.4 1 (ES584691) Hm_pwAE2_04A07_M13rev Amplicon Express mixed pupa... 44 5.4 1 (AV776377) Lotus japonicus cDNA clone:MPD097h09_f, 3' end. 44 5.4 1 (CX700563) Hm_L6w_05E05_T7seq Heliconius melpomene late 5th ... 44 5.4 1 (CO729906) Hm_pupb_14F10_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1 (CO729851) Hm_pupb_13H02_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1 (CO729772) Hm_pupb_10B07_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1 (CO729671) Hm_pupb_07C05_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1 (CO729594) Hm_pupb_03E12_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1 (CO729528) Hm_pupb_01F06_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1 (BW200919) Ciona intestinalis cDNA, clone:cicl076f08, 5' end... 44 5.4 1 (BW196225) Ciona intestinalis cDNA, clone:cicl038n03, 5' end... 44 5.4 1 (BW106578) Ciona intestinalis cDNA, clone:rcicl038n03, 3' en... 44 5.4 1 (BP081285) Lotus japonicus cDNA, clone:MR069c02_f, 3' end. 44 5.4 1 (BP045136) Lotus japonicus cDNA, clone:SPD014g02_f, 3' end. 44 5.4 1 (BP028993) Lotus japonicus cDNA, clone:MF014f02_f, 3' end. 44 5.4 1 (BB895913) Macaca fascicularis cDNA clone: Qlv-U117A-D3, 3'e... 44 5.4 1 (EY483181) CBBP12822.rev CBBP Hirudo medicinalis hermaphrodi... 44 5.4 1 (CR962131) Medicago truncatula chromosome 5 clone mth2-69b10... 36 5.5 4 (CU467668) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.6 4 (EF568108) Glossina pallidipes salivary gland hypertrophy vi... 34 6.0 6 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 6.6 12
>(BJ436538) Dictyostelium discoideum cDNA clone:ddv31p12, 3' end, single read. Length = 561
Score = 1074 bits (542), Expect = 0.0 Identities = 560/560 (100%) Strand = Plus / Minus
Query: 11 caggcattggaggtattggtcagtaaatctcccccntttaaaattcatcgtgtacctgtt 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 caggcattggaggtattggtcagtaaatctcccccntttaaaattcatcgtgtacctgtt 502
Query: 71 ttcgnctatgataatgaattggtaggaattttatcacaaactgatttcctttacttggnt 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 ttcgnctatgataatgaattggtaggaattttatcacaaactgatttcctttacttggnt 442
Query: 131 agggaaaatttacatcaattatcaantaattcacataaatccatcaaagatttgaaatta 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 441 agggaaaatttacatcaattatcaantaattcacataaatccatcaaagatttgaaatta 382
Query: 191 atgtntcctgttgtttcctttacagctgatactgtcacaaaggatgcttttcaattatta 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 atgtntcctgttgtttcctttacagctgatactgtcacaaaggatgcttttcaattatta 322
Query: 251 agaccaaatagaattaatggtgttgcaatagttgatgaaaagactggtcgttgtaattca 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 321 agaccaaatagaattaatggtgttgcaatagttgatgaaaagactggtcgttgtaattca 262
Query: 311 ttgtttatcttctgacgatttaaagaatataacaagtttaaaatttgatttattatttaa 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 ttgtttatcttctgacgatttaaagaatataacaagtttaaaatttgatttattatttaa 202
Query: 371 accaataaaagaatatttagattcatctggtggtgttaaaacaccaatgacaataacaga 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 201 accaataaaagaatatttagattcatctggtggtgttaaaacaccaatgacaataacaga 142
Query: 431 gaatacaacattagttgaagttattaaaataatgtgtgaccataaagttcaaagattatt 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141 gaatacaacattagttgaagttattaaaataatgtgtgaccataaagttcaaagattatt 82
Query: 491 tacagtcgataaagatttcagaccattaacagtcacacccatctccgatgttttattaat 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81 tacagtcgataaagatttcagaccattaacagtcacacccatctccgatgttttattaat 22
Query: 551 atacttaattgttaangaaa 570 |||||||||||||||||||| Sbjct: 21 atacttaattgttaangaaa 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 672,748,669 Number of extensions: 40468583 Number of successful extensions: 3338744 Number of sequences better than 10.0: 114 Length of query: 570 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 547 Effective length of database: 93,106,754,628 Effective search space: 50929394781516 Effective search space used: 50929394781516 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.12 |
Homology vs Protein |
Query= Contig-U14754-1 (Contig-U14754-1Q) /CSM_Contig/Contig-U14754-1Q.Seq.d (570 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
CP001213_1041(CP001213|pid:none) Bifidobacterium animalis subsp.... 46 8e-04 CP001515_505(CP001515|pid:none) Bifidobacterium animalis subsp. ... 46 8e-04 CP001230_222(CP001230|pid:none) Persephonella marina EX-H1, comp... 42 0.015 AP008207_1696(AP008207|pid:none) Oryza sativa (japonica cultivar... 35 0.033 AK069698_1(AK069698|pid:none) Oryza sativa Japonica Group cDNA c... 35 0.034 CP000909_598(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 40 0.057 CP000968_251(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 31 0.13 AE014297_3063(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.14 AE014297_3058(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15 AE014297_3066(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15 AE014297_3070(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15 AE014297_3071(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15 BT029655_1(BT029655|pid:none) Drosophila melanogaster IP17240 fu... 34 0.15 AE014297_3064(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15 BT001549_1(BT001549|pid:none) Drosophila melanogaster RE11278 fu... 34 0.15 CT573213_1104(CT573213|pid:none) Frankia alni str. ACN14A chromo... 38 0.17 AE014295_1637(AE014295|pid:none) Bifidobacterium longum NCC2705,... 38 0.22 CP001095_559(CP001095|pid:none) Bifidobacterium longum subsp. in... 38 0.22 CP000088_2589(CP000088|pid:none) Thermobifida fusca YX, complete... 37 0.28 AY166753_1(AY166753|pid:none) Drosophila melanogaster loechrig i... 33 0.31 AF094763_1(AF094763|pid:none) Drosophila melanogaster SNF4/AMP-a... 33 0.32 CP001279_668(CP001279|pid:none) Nautilia profundicola AmH, compl... 37 0.37 CP000487_578(CP000487|pid:none) Campylobacter fetus subsp. fetus... 37 0.37 CP000447_1127(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 37 0.49 CP000249_625(CP000249|pid:none) Frankia sp. CcI3, complete genome. 37 0.49 CP001337_3282(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 37 0.49 CP000583_516(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 37 0.49 CP001080_786(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 36 0.63 AP009179_1794(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 36 0.63 CP000767_56(CP000767|pid:none) Campylobacter curvus 525.92, comp... 36 0.83 AC006761_7(AC006761|pid:none) Caenorhabditis elegans cosmid Y41G... 36 0.83 CP001087_2848(CP001087|pid:none) Desulfobacterium autotrophicum ... 35 1.4 CP000968_1469(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 35 1.4 FM992693_358(FM992693|pid:none) Candida dubliniensis CD36 chromo... 35 1.4 CP001330_607(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 35 1.4 (Q9UY49) RecName: Full=Inosine-5'-monophosphate dehydrogenase; ... 35 1.4 AE017125_702(AE017125|pid:none) Helicobacter hepaticus ATCC 5144... 35 1.4 CP000497_253(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 35 1.8 AP009256_450(AP009256|pid:none) Bifidobacterium adolescentis ATC... 35 1.8 X53676_10(X53676|pid:none) Pseudomonas stutzeri, complete denitr... 35 1.8 CP000816_596(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 35 1.8 CP000949_4232(CP000949|pid:none) Pseudomonas putida W619, comple... 35 1.8 (Q9KGN8) RecName: Full=Inosine-5'-monophosphate dehydrogenase; ... 35 1.8 AY714817_11(AY714817|pid:none) Uncultured archaeon GZfos12E1 clo... 34 2.4 CP000814_997(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 34 2.4 CP001328_339(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 34 2.4 AL111168_995(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 34 2.4 CP000025_1162(CP000025|pid:none) Campylobacter jejuni RM1221, co... 34 2.4 CP001098_1876(CP001098|pid:none) Halothermothrix orenii H 168, c... 34 2.4 CP000768_549(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 34 2.4 CP001251_1430(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,... 29 3.1 CP001098_2030(CP001098|pid:none) Halothermothrix orenii H 168, c... 34 3.1 CP000361_594(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 34 3.1 CP000076_899(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co... 34 3.1 CP001196_2783(CP001196|pid:none) Oligotropha carboxidovorans OM5... 34 3.1 CP000850_4072(CP000850|pid:none) Salinispora arenicola CNS-205, ... 34 3.1 AP010904_2271(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 33 4.1 AP009152_678(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, c... 33 4.1 CP001634_1558(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, c... 33 4.1 CP000804_201(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 33 4.1 EF451155_20(EF451155|pid:none) Paenibacillus polymyxa strain PKB... 33 4.1 AM286690_557(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 33 4.1 BX294150_101(BX294150|pid:none) Rhodopirellula baltica SH 1 comp... 33 5.4 BA000016_2276(BA000016|pid:none) Clostridium perfringens str. 13... 33 5.4 AE017262_2721(AE017262|pid:none) Listeria monocytogenes str. 4b ... 33 5.4 (P65167) RecName: Full=Inosine-5'-monophosphate dehydrogenase; ... 33 5.4 CP001398_760(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 33 5.4 AM778937_19(AM778937|pid:none) Microcystis aeruginosa PCC 7806 g... 33 5.4 AP009552_1852(AP009552|pid:none) Microcystis aeruginosa NIES-843... 33 5.4 EF584738_1(EF584738|pid:none) Petromyzon marinus AMP-activated p... 28 5.5 CP000561_357(CP000561|pid:none) Pyrobaculum calidifontis JCM 115... 33 7.0 CP000444_3320(CP000444|pid:none) Shewanella sp. MR-7, complete g... 33 7.0 CP000462_3785(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 33 7.0 CP000937_23(CP000937|pid:none) Francisella philomiragia subsp. p... 33 7.0 CT573326_1001(CT573326|pid:none) Pseudomonas entomophila str. L4... 33 7.0 AM420293_6519(AM420293|pid:none) Saccharopolyspora erythraea NRR... 33 7.0 CP001130_189(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co... 33 7.0 CP001055_281(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 33 7.0 CP000094_861(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, c... 33 7.0 CU207211_1615(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 33 7.0 AE017340_575(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 30 8.7 AM774075_1(AM774075|pid:none) Clostridium botulinum guaB gene fo... 32 9.2 CP000448_1048(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 32 9.2 CP001083_3416(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 32 9.2 CP000962_3277(CP000962|pid:none) Clostridium botulinum A3 str. L... 32 9.2 AM181176_866(AM181176|pid:none) Pseudomonas fluorescens SBW25 co... 32 9.2 CP000667_3782(CP000667|pid:none) Salinispora tropica CNB-440, co... 32 9.2 CP000686_1841(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 32 9.2 CP000560_2993(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 32 9.2 CP000939_3293(CP000939|pid:none) Clostridium botulinum B1 str. O... 32 9.2 CP000504_249(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 32 9.2 AM774073_1(AM774073|pid:none) Clostridium botulinum guaB gene fo... 32 9.2
>CP001213_1041(CP001213|pid:none) Bifidobacterium animalis subsp. lactis AD011, complete genome. Length = 511
Score = 45.8 bits (107), Expect = 8e-04 Identities = 26/80 (32%), Positives = 42/80 (52%) Frame = +2
Query: 47 FKIHRVPVFXYDNELVGILSQTDFLYLXRENLHQLSXNSHKSIKDLKLMXPVVSFTADTV 226 F I +PV +DN+LVGI++ D ++ E+ H +KD+ +V+ +D Sbjct: 130 FHISGLPVVDHDNKLVGIITNRDMRFIASEDY------DHLRVKDVMTKENLVTGPSDIS 183
Query: 227 TKDAFQLLRPNRINGVAIVD 286 KDA LL N+I + +VD Sbjct: 184 KKDAHDLLAKNKIEKLPLVD 203
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 813,163,970 Number of extensions: 14453671 Number of successful extensions: 28698 Number of sequences better than 10.0: 92 Number of HSP's gapped: 28654 Number of HSP's successfully gapped: 108 Length of query: 190 Length of database: 1,051,180,864 Length adjustment: 121 Effective length of query: 69 Effective length of database: 659,557,225 Effective search space: 45509448525 Effective search space used: 45509448525 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 30 (16.2 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |