Contig-U14754-1
Contig ID Contig-U14754-1
Contig update 2002.12.18
Contig sequence
>Contig-U14754-1 (Contig-U14754-1Q) /CSM_Contig/Contig-U14754-1Q.Seq.d
NNNNNNNNNNCAGGCATTGGAGGTATTGGTCAGTAAATCTCCCCCNTTTA
AAATTCATCGTGTACCTGTTTTCGNCTATGATAATGAATTGGTAGGAATT
TTATCACAAACTGATTTCCTTTACTTGGNTAGGGAAAATTTACATCAATT
ATCAANTAATTCACATAAATCCATCAAAGATTTGAAATTAATGTNTCCTG
TTGTTTCCTTTACAGCTGATACTGTCACAAAGGATGCTTTTCAATTATTA
AGACCAAATAGAATTAATGGTGTTGCAATAGTTGATGAAAAGACTGGTCG
TTGTAATTCATTGTTTATCTTCTGACGATTTAAAGAATATAACAAGTTTA
AAATTTGATTTATTATTTAAACCAATAAAAGAATATTTAGATTCATCTGG
TGGTGTTAAAACACCAATGACAATAACAGAGAATACAACATTAGTTGAAG
TTATTAAAATAATGTGTGACCATAAAGTTCAAAGATTATTTACAGTCGAT
AAAGATTTCAGACCATTAACAGTCACACCCATCTCCGATGTTTTATTAAT
ATACTTAATTGTTAANGAAA

Gap no gap
Contig length 570
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1627945
End point 1628506
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U14754
List of clone(s)

est1=VHA448Z,1,561
Translated Amino Acid sequence
XXXQALEVLVSKSPPFKIHRVPVFXYDNELVGILSQTDFLYLXRENLHQLSXNSHKSIKD
LKLMXPVVSFTADTVTKDAFQLLRPNRINGVAIVDEKTGRCNSLFIF*rfkeynkfki*f
ii*tnkrifrfiwwc*ntndnnreynis*sy*nnv*p*sskiiysr*rfqtinshthlrc
finilnc*x


Translated Amino Acid sequence (All Frames)
Frame A:
xxxxgiggigq*ispx*nssctcfrl***igrnfitn*fpllg*gkftsiix*ft*ihqr
feinvsccflys*ychkgcfsiiktk*n*wccns**kdwsl*fivyllti*ri*qv*nli
yylnq*kni*ihlvvlkhq*q*qriqh*lkllk*cvtikfkdylqsikisdh*qshpspm
fy*yt*llxk


Frame B:
XXXQALEVLVSKSPPFKIHRVPVFXYDNELVGILSQTDFLYLXRENLHQLSXNSHKSIKD
LKLMXPVVSFTADTVTKDAFQLLRPNRINGVAIVDEKTGRCNSLFIF*rfkeynkfki*f
ii*tnkrifrfiwwc*ntndnnreynis*sy*nnv*p*sskiiysr*rfqtinshthlrc
finilnc*x


Frame C:
xxxrhwrywsvnlpxlkfivylfsxmimnw*efyhklisftwxgkiyinyqxihinpski
*n*cxllfplqlilsqrmlfny*dqielmvlq*lmkrlvvvihclssddlknitslkfdl
lfkpikeyldssggvktpmtitenttlvevikimcdhkvqrlftvdkdfrpltvtpisdv
lliylivxe


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14754-1 (Contig-U14754-1Q)
/CSM_Contig/Contig-U14754-1Q.Seq.d
(570 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14754-1 (Contig-U14754-1Q) /CSM_Contig/Conti... 1074 0.0
Contig-U10471-1 (Contig-U10471-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U14787-1 (Contig-U14787-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U14254-1 (Contig-U14254-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U13008-1 (Contig-U13008-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U10858-1 (Contig-U10858-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U09001-1 (Contig-U09001-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U06613-1 (Contig-U06613-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U05298-1 (Contig-U05298-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U03348-1 (Contig-U03348-1Q) /CSM_Contig/Conti... 34 0.16

>Contig-U14754-1 (Contig-U14754-1Q) /CSM_Contig/Contig-U14754-1Q.Seq.d
Length = 570

Score = 1074 bits (542), Expect = 0.0
Identities = 560/560 (100%)
Strand = Plus / Plus


Query: 11 caggcattggaggtattggtcagtaaatctcccccntttaaaattcatcgtgtacctgtt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 caggcattggaggtattggtcagtaaatctcccccntttaaaattcatcgtgtacctgtt 70


Query: 71 ttcgnctatgataatgaattggtaggaattttatcacaaactgatttcctttacttggnt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ttcgnctatgataatgaattggtaggaattttatcacaaactgatttcctttacttggnt 130


Query: 131 agggaaaatttacatcaattatcaantaattcacataaatccatcaaagatttgaaatta 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agggaaaatttacatcaattatcaantaattcacataaatccatcaaagatttgaaatta 190


Query: 191 atgtntcctgttgtttcctttacagctgatactgtcacaaaggatgcttttcaattatta 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atgtntcctgttgtttcctttacagctgatactgtcacaaaggatgcttttcaattatta 250


Query: 251 agaccaaatagaattaatggtgttgcaatagttgatgaaaagactggtcgttgtaattca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agaccaaatagaattaatggtgttgcaatagttgatgaaaagactggtcgttgtaattca 310


Query: 311 ttgtttatcttctgacgatttaaagaatataacaagtttaaaatttgatttattatttaa 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttgtttatcttctgacgatttaaagaatataacaagtttaaaatttgatttattatttaa 370


Query: 371 accaataaaagaatatttagattcatctggtggtgttaaaacaccaatgacaataacaga 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 accaataaaagaatatttagattcatctggtggtgttaaaacaccaatgacaataacaga 430


Query: 431 gaatacaacattagttgaagttattaaaataatgtgtgaccataaagttcaaagattatt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaatacaacattagttgaagttattaaaataatgtgtgaccataaagttcaaagattatt 490


Query: 491 tacagtcgataaagatttcagaccattaacagtcacacccatctccgatgttttattaat 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tacagtcgataaagatttcagaccattaacagtcacacccatctccgatgttttattaat 550


Query: 551 atacttaattgttaangaaa 570
||||||||||||||||||||
Sbjct: 551 atacttaattgttaangaaa 570


>Contig-U10471-1 (Contig-U10471-1Q) /CSM_Contig/Contig-U10471-1Q.Seq.d
Length = 606

Score = 36.2 bits (18), Expect = 0.040
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 347 tttaaaatttgatttatt 364
||||||||||||||||||
Sbjct: 67 tttaaaatttgatttatt 50


>Contig-U14787-1 (Contig-U14787-1Q) /CSM_Contig/Contig-U14787-1Q.Seq.d
Length = 614

Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 310 attgtttatcttctgac 326
|||||||||||||||||
Sbjct: 58 attgtttatcttctgac 42


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9172
Number of Sequences: 6905
Number of extensions: 9172
Number of successful extensions: 1010
Number of sequences better than 10.0: 305
length of query: 570
length of database: 5,674,871
effective HSP length: 16
effective length of query: 554
effective length of database: 5,564,391
effective search space: 3082672614
effective search space used: 3082672614
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.30
Homology vs DNA
Query= Contig-U14754-1 (Contig-U14754-1Q) /CSM_Contig/Contig-U14754-1Q.Seq.d
(570 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ436538) Dictyostelium discoideum cDNA clone:ddv31p12, 3' ... 1074 0.0 1
(CT009638) Zebrafish DNA sequence from clone CH73-162A18 in ... 46 0.010 4
(AC161223) Mus musculus chromosome 3, clone RP24-173A7, comp... 50 0.087 1
(AC114665) Mus musculus chromosome 3 clone RP24-173A7 map 3,... 50 0.087 1
(AC114664) Mus musculus chromosome 3 clone RP24-173F24 map 3... 50 0.087 1
(AC198285) Spermophilus tridecemlineatus clone VMRC20-643K14... 48 0.13 3
(ER507717) 1093015428752 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.34 1
(ER461549) 1092963897735 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.34 1
(ER356940) 1092351152114 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.34 1
(ER354148) 1092351008594 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.34 1
(ER315459) 1092344138307 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.34 1
(EK553872) 1095516145010 Global-Ocean-Sampling_GS-32-01-01-1... 48 0.34 1
(EK462104) 1095469396310 Global-Ocean-Sampling_GS-32-01-01-1... 48 0.34 1
(EK058784) 1092960054861 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.34 1
(EJ763702) 1092963160357 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.34 1
(EJ750633) 1092963032298 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.34 1
(EJ736487) 1092961169833 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.34 1
(EJ683047) 1092955146492 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.34 1
(EJ623737) 1092963115484 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.34 1
(EJ621521) 1092963073849 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.34 1
(EJ441948) 1093015308171 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.34 1
(EJ214989) 1092351056426 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.34 1
(BH958076) odf85c03.g1 B.oleracea002 Brassica oleracea genom... 48 0.34 1
(ES587744) Hm_pwAE2_44H04_M13rev Amplicon Express mixed pupa... 44 0.44 2
(CO729505) Hm_pupb_01D06_pBACe3.6_t7 Heliconius melpomene pu... 44 0.48 2
(ES586711) Hm_pwAE2_31G04_M13rev Amplicon Express mixed pupa... 44 0.48 2
(CX700726) Hm_L6w_05D11_T7seq Heliconius melpomene late 5th ... 44 0.50 2
(CO729570) Hm_pupb_03C04_pBACe3.6_t7 Heliconius melpomene pu... 44 0.52 2
(ES584737) Hm_pwAE2_04E08_M13rev Amplicon Express mixed pupa... 44 0.53 2
(ES584678) Hm_pwAE2_03H04_M13rev Amplicon Express mixed pupa... 44 0.55 2
(EE743396) Hm_pwAE2_02H04_T3 Heliconius melpomene prepupal a... 44 0.56 2
(CO729561) Hm_pupb_03B03_pBACe3.6_t7 Heliconius melpomene pu... 44 0.60 2
(CO729549) Hm_pupb_01H09_pBACe3.6_t7 Heliconius melpomene pu... 44 0.61 2
(FH387560) CHO_OF4763xc11f1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 0.67 3
(CR847522) Zebrafish DNA sequence from clone CH211-165A18 in... 46 1.4 1
(EF545123) Tribolium castaneum glutamate-gated chloride chan... 46 1.4 1
(EF545122) Tribolium castaneum glutamate-gated chloride chan... 46 1.4 1
(EF545121) Tribolium castaneum glutamate-gated chloride chan... 46 1.4 1
(AC136549) Rattus norvegicus clone CH230-179L13, *** SEQUENC... 46 1.4 1
(AC132992) Rattus norvegicus clone CH230-97I7, *** SEQUENCIN... 46 1.4 1
(CU466376) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1
(ER563328) 1093015757042 Global-Ocean-Sampling_GS-36-01-01-2... 46 1.4 1
(EI379413) POTDP32TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 1.4 1
(DV418746) NADYT50TF Aedes aegypti infected with Dengue viru... 46 1.4 1
(DV360969) NACAE24TFB Aedes aegypti infected with Brugia Mal... 46 1.4 1
(DV264454) AEDAA21TF Aedes re-sequencing Aedes aegypti cDNA ... 46 1.4 1
(BX005392) Zebrafish DNA sequence from clone DKEY-117J14 in ... 32 1.7 7
(ES225409) MpSG_ag3_A13 Myzus persicae, tobacco lineage, aph... 36 1.9 2
(EJ856122) 1093017941350 Global-Ocean-Sampling_GS-30-02-01-1... 42 2.4 2
(EJ853456) 1093017903201 Global-Ocean-Sampling_GS-30-02-01-1... 42 2.5 2
(EJ190962) 1092344196395 Global-Ocean-Sampling_GS-27-01-01-1... 38 2.5 2
(AC163119) Bos taurus clone CH240-124M24, WORKING DRAFT SEQU... 32 2.6 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 2.9 7
(DE531785) Bombyx mori genomic DNA, Fosmid clone:GBMFno155_l... 34 3.6 2
(AM489356) Vitis vinifera contig VV78X096721.4, whole genome... 44 3.9 2
(AC008706) Homo sapiens chromosome 5 clone CTB-77M23, comple... 44 3.9 3
(AC231065) Bos taurus clone CH240-491N10, WORKING DRAFT SEQU... 42 3.9 3
(CR388057) Zebrafish DNA sequence from clone DKEYP-28G3 in l... 40 4.5 2
(AP006401) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 5.4 1
(AY445658) Antheraea pernyi diapause hormone-phermone biosyn... 44 5.4 1
(AC068657) Homo sapiens chromosome 5 clone CTB-67I13, comple... 44 5.4 1
(AC022407) Homo sapiens chromosome 15 clone RP11-105D1 map 1... 44 5.4 1
(AC021752) Homo sapiens chromosome 15 clone CTD-2378E12 map ... 44 5.4 1
(AC141994) Rattus norvegicus clone CH230-291C16, *** SEQUENC... 44 5.4 1
(CU606931) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.4 1
(CU606888) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.4 1
(AC036168) Homo sapiens chromosome 15 clone RP11-623I18 map ... 44 5.4 1
(AP009989) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 5.4 1
(AC169061) Bos taurus clone CH240-232M13, WORKING DRAFT SEQU... 44 5.4 1
(AZ671062) ENTJF41TF Entamoeba histolytica Sheared DNA Entam... 44 5.4 1
(ET352199) S0207D05_T7 CHORI-214 Salmo salar genomic clone S... 44 5.4 1
(EK582741) 1095522004169 Global-Ocean-Sampling_GS-32-01-01-1... 44 5.4 1
(EK269571) 1095462249720 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1
(EK200802) 1095460055943 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1
(AM675027) Entamoeba terrapinae GSS, clone terra004h05.q1k. 44 5.4 1
(EJ815447) 1093017512913 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.4 1
(EJ069463) 1095458072709 Global-Ocean-Sampling_GS-26-01-01-1... 44 5.4 1
(CU777672) A BAC library has been constructed from PN40024 g... 44 5.4 1
(CU759774) A BAC library has been constructed from PN40024 g... 44 5.4 1
(ES584691) Hm_pwAE2_04A07_M13rev Amplicon Express mixed pupa... 44 5.4 1
(AV776377) Lotus japonicus cDNA clone:MPD097h09_f, 3' end. 44 5.4 1
(CX700563) Hm_L6w_05E05_T7seq Heliconius melpomene late 5th ... 44 5.4 1
(CO729906) Hm_pupb_14F10_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1
(CO729851) Hm_pupb_13H02_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1
(CO729772) Hm_pupb_10B07_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1
(CO729671) Hm_pupb_07C05_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1
(CO729594) Hm_pupb_03E12_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1
(CO729528) Hm_pupb_01F06_pBACe3.6_t7 Heliconius melpomene pu... 44 5.4 1
(BW200919) Ciona intestinalis cDNA, clone:cicl076f08, 5' end... 44 5.4 1
(BW196225) Ciona intestinalis cDNA, clone:cicl038n03, 5' end... 44 5.4 1
(BW106578) Ciona intestinalis cDNA, clone:rcicl038n03, 3' en... 44 5.4 1
(BP081285) Lotus japonicus cDNA, clone:MR069c02_f, 3' end. 44 5.4 1
(BP045136) Lotus japonicus cDNA, clone:SPD014g02_f, 3' end. 44 5.4 1
(BP028993) Lotus japonicus cDNA, clone:MF014f02_f, 3' end. 44 5.4 1
(BB895913) Macaca fascicularis cDNA clone: Qlv-U117A-D3, 3'e... 44 5.4 1
(EY483181) CBBP12822.rev CBBP Hirudo medicinalis hermaphrodi... 44 5.4 1
(CR962131) Medicago truncatula chromosome 5 clone mth2-69b10... 36 5.5 4
(CU467668) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.6 4
(EF568108) Glossina pallidipes salivary gland hypertrophy vi... 34 6.0 6
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 6.6 12

>(BJ436538) Dictyostelium discoideum cDNA clone:ddv31p12, 3' end,
single read.
Length = 561

Score = 1074 bits (542), Expect = 0.0
Identities = 560/560 (100%)
Strand = Plus / Minus


Query: 11 caggcattggaggtattggtcagtaaatctcccccntttaaaattcatcgtgtacctgtt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggcattggaggtattggtcagtaaatctcccccntttaaaattcatcgtgtacctgtt 502


Query: 71 ttcgnctatgataatgaattggtaggaattttatcacaaactgatttcctttacttggnt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcgnctatgataatgaattggtaggaattttatcacaaactgatttcctttacttggnt 442


Query: 131 agggaaaatttacatcaattatcaantaattcacataaatccatcaaagatttgaaatta 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggaaaatttacatcaattatcaantaattcacataaatccatcaaagatttgaaatta 382


Query: 191 atgtntcctgttgtttcctttacagctgatactgtcacaaaggatgcttttcaattatta 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtntcctgttgtttcctttacagctgatactgtcacaaaggatgcttttcaattatta 322


Query: 251 agaccaaatagaattaatggtgttgcaatagttgatgaaaagactggtcgttgtaattca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaccaaatagaattaatggtgttgcaatagttgatgaaaagactggtcgttgtaattca 262


Query: 311 ttgtttatcttctgacgatttaaagaatataacaagtttaaaatttgatttattatttaa 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtttatcttctgacgatttaaagaatataacaagtttaaaatttgatttattatttaa 202


Query: 371 accaataaaagaatatttagattcatctggtggtgttaaaacaccaatgacaataacaga 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaataaaagaatatttagattcatctggtggtgttaaaacaccaatgacaataacaga 142


Query: 431 gaatacaacattagttgaagttattaaaataatgtgtgaccataaagttcaaagattatt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gaatacaacattagttgaagttattaaaataatgtgtgaccataaagttcaaagattatt 82


Query: 491 tacagtcgataaagatttcagaccattaacagtcacacccatctccgatgttttattaat 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tacagtcgataaagatttcagaccattaacagtcacacccatctccgatgttttattaat 22


Query: 551 atacttaattgttaangaaa 570
||||||||||||||||||||
Sbjct: 21 atacttaattgttaangaaa 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 672,748,669
Number of extensions: 40468583
Number of successful extensions: 3338744
Number of sequences better than 10.0: 114
Length of query: 570
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 547
Effective length of database: 93,106,754,628
Effective search space: 50929394781516
Effective search space used: 50929394781516
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.12
Homology vs Protein
Query= Contig-U14754-1 (Contig-U14754-1Q) /CSM_Contig/Contig-U14754-1Q.Seq.d
(570 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP001213_1041(CP001213|pid:none) Bifidobacterium animalis subsp.... 46 8e-04
CP001515_505(CP001515|pid:none) Bifidobacterium animalis subsp. ... 46 8e-04
CP001230_222(CP001230|pid:none) Persephonella marina EX-H1, comp... 42 0.015
AP008207_1696(AP008207|pid:none) Oryza sativa (japonica cultivar... 35 0.033
AK069698_1(AK069698|pid:none) Oryza sativa Japonica Group cDNA c... 35 0.034
CP000909_598(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 40 0.057
CP000968_251(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 31 0.13
AE014297_3063(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.14
AE014297_3058(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15
AE014297_3066(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15
AE014297_3070(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15
AE014297_3071(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15
BT029655_1(BT029655|pid:none) Drosophila melanogaster IP17240 fu... 34 0.15
AE014297_3064(AE014297|pid:none) Drosophila melanogaster chromos... 34 0.15
BT001549_1(BT001549|pid:none) Drosophila melanogaster RE11278 fu... 34 0.15
CT573213_1104(CT573213|pid:none) Frankia alni str. ACN14A chromo... 38 0.17
AE014295_1637(AE014295|pid:none) Bifidobacterium longum NCC2705,... 38 0.22
CP001095_559(CP001095|pid:none) Bifidobacterium longum subsp. in... 38 0.22
CP000088_2589(CP000088|pid:none) Thermobifida fusca YX, complete... 37 0.28
AY166753_1(AY166753|pid:none) Drosophila melanogaster loechrig i... 33 0.31
AF094763_1(AF094763|pid:none) Drosophila melanogaster SNF4/AMP-a... 33 0.32
CP001279_668(CP001279|pid:none) Nautilia profundicola AmH, compl... 37 0.37
CP000487_578(CP000487|pid:none) Campylobacter fetus subsp. fetus... 37 0.37
CP000447_1127(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 37 0.49
CP000249_625(CP000249|pid:none) Frankia sp. CcI3, complete genome. 37 0.49
CP001337_3282(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 37 0.49
CP000583_516(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 37 0.49
CP001080_786(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 36 0.63
AP009179_1794(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 36 0.63
CP000767_56(CP000767|pid:none) Campylobacter curvus 525.92, comp... 36 0.83
AC006761_7(AC006761|pid:none) Caenorhabditis elegans cosmid Y41G... 36 0.83
CP001087_2848(CP001087|pid:none) Desulfobacterium autotrophicum ... 35 1.4
CP000968_1469(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 35 1.4
FM992693_358(FM992693|pid:none) Candida dubliniensis CD36 chromo... 35 1.4
CP001330_607(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 35 1.4
(Q9UY49) RecName: Full=Inosine-5'-monophosphate dehydrogenase; ... 35 1.4
AE017125_702(AE017125|pid:none) Helicobacter hepaticus ATCC 5144... 35 1.4
CP000497_253(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 35 1.8
AP009256_450(AP009256|pid:none) Bifidobacterium adolescentis ATC... 35 1.8
X53676_10(X53676|pid:none) Pseudomonas stutzeri, complete denitr... 35 1.8
CP000816_596(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 35 1.8
CP000949_4232(CP000949|pid:none) Pseudomonas putida W619, comple... 35 1.8
(Q9KGN8) RecName: Full=Inosine-5'-monophosphate dehydrogenase; ... 35 1.8
AY714817_11(AY714817|pid:none) Uncultured archaeon GZfos12E1 clo... 34 2.4
CP000814_997(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 34 2.4
CP001328_339(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 34 2.4
AL111168_995(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 34 2.4
CP000025_1162(CP000025|pid:none) Campylobacter jejuni RM1221, co... 34 2.4
CP001098_1876(CP001098|pid:none) Halothermothrix orenii H 168, c... 34 2.4
CP000768_549(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 34 2.4
CP001251_1430(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,... 29 3.1
CP001098_2030(CP001098|pid:none) Halothermothrix orenii H 168, c... 34 3.1
CP000361_594(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 34 3.1
CP000076_899(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co... 34 3.1
CP001196_2783(CP001196|pid:none) Oligotropha carboxidovorans OM5... 34 3.1
CP000850_4072(CP000850|pid:none) Salinispora arenicola CNS-205, ... 34 3.1
AP010904_2271(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 33 4.1
AP009152_678(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, c... 33 4.1
CP001634_1558(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, c... 33 4.1
CP000804_201(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 33 4.1
EF451155_20(EF451155|pid:none) Paenibacillus polymyxa strain PKB... 33 4.1
AM286690_557(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 33 4.1
BX294150_101(BX294150|pid:none) Rhodopirellula baltica SH 1 comp... 33 5.4
BA000016_2276(BA000016|pid:none) Clostridium perfringens str. 13... 33 5.4
AE017262_2721(AE017262|pid:none) Listeria monocytogenes str. 4b ... 33 5.4
(P65167) RecName: Full=Inosine-5'-monophosphate dehydrogenase; ... 33 5.4
CP001398_760(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 33 5.4
AM778937_19(AM778937|pid:none) Microcystis aeruginosa PCC 7806 g... 33 5.4
AP009552_1852(AP009552|pid:none) Microcystis aeruginosa NIES-843... 33 5.4
EF584738_1(EF584738|pid:none) Petromyzon marinus AMP-activated p... 28 5.5
CP000561_357(CP000561|pid:none) Pyrobaculum calidifontis JCM 115... 33 7.0
CP000444_3320(CP000444|pid:none) Shewanella sp. MR-7, complete g... 33 7.0
CP000462_3785(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 33 7.0
CP000937_23(CP000937|pid:none) Francisella philomiragia subsp. p... 33 7.0
CT573326_1001(CT573326|pid:none) Pseudomonas entomophila str. L4... 33 7.0
AM420293_6519(AM420293|pid:none) Saccharopolyspora erythraea NRR... 33 7.0
CP001130_189(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co... 33 7.0
CP001055_281(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 33 7.0
CP000094_861(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, c... 33 7.0
CU207211_1615(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 33 7.0
AE017340_575(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 30 8.7
AM774075_1(AM774075|pid:none) Clostridium botulinum guaB gene fo... 32 9.2
CP000448_1048(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 32 9.2
CP001083_3416(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 32 9.2
CP000962_3277(CP000962|pid:none) Clostridium botulinum A3 str. L... 32 9.2
AM181176_866(AM181176|pid:none) Pseudomonas fluorescens SBW25 co... 32 9.2
CP000667_3782(CP000667|pid:none) Salinispora tropica CNB-440, co... 32 9.2
CP000686_1841(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 32 9.2
CP000560_2993(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 32 9.2
CP000939_3293(CP000939|pid:none) Clostridium botulinum B1 str. O... 32 9.2
CP000504_249(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 32 9.2
AM774073_1(AM774073|pid:none) Clostridium botulinum guaB gene fo... 32 9.2

>CP001213_1041(CP001213|pid:none) Bifidobacterium animalis subsp.
lactis AD011, complete genome.
Length = 511

Score = 45.8 bits (107), Expect = 8e-04
Identities = 26/80 (32%), Positives = 42/80 (52%)
Frame = +2

Query: 47 FKIHRVPVFXYDNELVGILSQTDFLYLXRENLHQLSXNSHKSIKDLKLMXPVVSFTADTV 226
F I +PV +DN+LVGI++ D ++ E+ H +KD+ +V+ +D
Sbjct: 130 FHISGLPVVDHDNKLVGIITNRDMRFIASEDY------DHLRVKDVMTKENLVTGPSDIS 183

Query: 227 TKDAFQLLRPNRINGVAIVD 286
KDA LL N+I + +VD
Sbjct: 184 KKDAHDLLAKNKIEKLPLVD 203

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 813,163,970
Number of extensions: 14453671
Number of successful extensions: 28698
Number of sequences better than 10.0: 92
Number of HSP's gapped: 28654
Number of HSP's successfully gapped: 108
Length of query: 190
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 69
Effective length of database: 659,557,225
Effective search space: 45509448525
Effective search space used: 45509448525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.58 gvh: 0.34 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U14754-1 is cyt

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0